0.026025
0.000000
0.000000
0.000000
0.016566
0.000000
0.000000
0.000000
0.011593
0.00000
0.00000
0.00000
Watanabe, L.
Shannon, J.D.
Valente, R.H.
Rucavado, A.
Alape-Giron, A.
Kamiguti, A.S.
Theakston, R.D.
Fox, J.W.
Gutierrez, J.M.
Arni, R.K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
38.425
60.364
86.257
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H7 N O3
129.114
n
PYROGLUTAMIC ACID
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
C
N
254
N
C
N
255
N
O
N
256
N
C
N
257
N
O
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
N
N
267
S
C
N
268
N
C
N
269
N
O
N
270
N
C
Y
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
Y
275
N
C
Y
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
N
N
290
S
C
N
291
N
C
N
292
N
O
N
293
N
C
N
294
N
C
N
295
N
C
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
N
N
307
S
C
N
308
N
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
N
N
321
S
C
N
322
N
C
N
323
N
O
N
324
R
C
N
325
N
O
N
326
N
C
N
327
N
O
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
N
N
338
S
C
N
339
N
C
N
340
N
O
N
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
N
Y
346
N
C
Y
347
N
C
Y
348
N
C
Y
349
N
C
Y
350
N
C
N
351
N
O
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
N
N
365
S
C
N
366
N
C
N
367
N
O
N
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
N
375
N
O
N
376
N
O
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
N
N
389
S
C
N
390
N
C
N
391
N
O
N
392
N
C
N
393
N
C
N
394
N
C
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
doub
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
Y
264
N
doub
Y
265
N
sing
Y
266
N
sing
N
267
N
sing
Y
268
N
doub
N
269
N
sing
Y
270
N
doub
N
271
N
sing
Y
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
doub
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
Y
333
N
doub
Y
334
N
sing
Y
335
N
sing
N
336
N
sing
Y
337
N
doub
Y
338
N
sing
Y
339
N
sing
N
340
N
sing
Y
341
N
sing
Y
342
N
doub
N
343
N
sing
Y
344
N
doub
N
345
N
sing
Y
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
doub
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
Y
361
N
doub
Y
362
N
sing
Y
363
N
sing
N
364
N
sing
Y
365
N
doub
N
366
N
sing
Y
367
N
doub
N
368
N
sing
Y
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
doub
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
US
Protein Sci.
PRCIEI
0795
0961-8368
12
2273
2281
10.1110/ps.03102403
14500885
Amino acid sequence and crystal structure of BaP1, a metalloproteinase from Bothrops asper snake venom that exerts multiple tissue-damaging activities
2003
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
55
1834
1841
10.1107/S0907444999010306
Structure of acutolysin-C, a haemorrhagic toxin from the venom of Agkistrodon acutus, providing further evidence for the mechanism of the pH-dependent proteolytic reaction of zinc metalloproteinases.
1999
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
283
657
668
10.1006/jmbi.1998.2110
Crystal Structures of Acutolysin A, a three-disulfide hemorrhagic zinc metalloproteinase from the snake venom of Agkistrodon acutus.
1998
10.2210/pdb1nd1/pdb
pdb_00001nd1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298
1
IMAGE PLATE
2002-07-23
MARRESEARCH
Graphite
LAUE
L
neutron
1
1.5418
1.0
D03B-MX1
LNLS
1.5418
SYNCHROTRON
LNLS BEAMLINE D03B-MX1
22747.682
BaP1
1
nat
polymer
65.409
ZINC ION
1
syn
non-polymer
18.015
water
110
nat
water
no
yes
(PCA)RFSPRYIELAVVADHGIFTKYNSNLNTIRTRVHEMLNTVNGFYRSVDVHAPLANLEVWSKQDLIKVQKDSSKTLK
SFGEWRERDLLPRISHDHAQLLTAVVFDGNTIGRAYTGGMCDPRHSVGVVRDHSKNNLWVAVTMAHELGHNLGIDHDTGS
CSCGAKSCIMASVLSKVLSYEFSDCSQNQYETYLTNHNPQCILNKP
QRFSPRYIELAVVADHGIFTKYNSNLNTIRTRVHEMLNTVNGFYRSVDVHAPLANLEVWSKQDLIKVQKDSSKTLKSFGE
WRERDLLPRISHDHAQLLTAVVFDGNTIGRAYTGGMCDPRHSVGVVRDHSKNNLWVAVTMAHELGHNLGIDHDTGSCSCG
AKSCIMASVLSKVLSYEFSDCSQNQYETYLTNHNPQCILNKP
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
terciopelo
Bothrops
sample
8722
Bothrops asper
Venom
1
2.09
40.77
VAPOR DIFFUSION, HANGING DROP
9.0
PEG 20000, dioxane, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
entity_poly
pdbx_struct_mod_residue
struct_conn
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_conn_type
struct_site
repository
Initial release
Version format compliance
Version format compliance
Derived calculations
Polymer sequence
Data collection
Database references
Derived calculations
Refinement description
1
0
2003-11-04
1
1
2008-04-28
1
2
2011-07-13
2
0
2019-12-25
2
1
2023-10-25
_entity_poly.pdbx_seq_one_letter_code_can
_pdbx_struct_mod_residue.parent_comp_id
_struct_conn.pdbx_leaving_atom_flag
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
PDBJ
2002-12-06
REL
REL
ZN
ZINC ION
HOH
water
1QUA
PDB_ID 1QUA
PDB
experimental model
ZN2
400
2
ZN
ZN
400
A
TIP
1
3
HOH
HOH
401
A
TIP
2
3
HOH
HOH
402
A
TIP
3
3
HOH
HOH
403
A
TIP
4
3
HOH
HOH
404
A
TIP
5
3
HOH
HOH
405
A
TIP
6
3
HOH
HOH
406
A
TIP
7
3
HOH
HOH
407
A
TIP
8
3
HOH
HOH
408
A
TIP
9
3
HOH
HOH
409
A
TIP
10
3
HOH
HOH
410
A
TIP
11
3
HOH
HOH
411
A
TIP
12
3
HOH
HOH
412
A
TIP
13
3
HOH
HOH
413
A
TIP
14
3
HOH
HOH
414
A
TIP
15
3
HOH
HOH
415
A
TIP
16
3
HOH
HOH
416
A
TIP
17
3
HOH
HOH
417
A
TIP
18
3
HOH
HOH
418
A
TIP
19
3
HOH
HOH
419
A
TIP
20
3
HOH
HOH
420
A
TIP
21
3
HOH
HOH
421
A
TIP
22
3
HOH
HOH
422
A
TIP
23
3
HOH
HOH
423
A
TIP
24
3
HOH
HOH
424
A
TIP
25
3
HOH
HOH
425
A
TIP
26
3
HOH
HOH
426
A
TIP
27
3
HOH
HOH
427
A
TIP
28
3
HOH
HOH
428
A
TIP
29
3
HOH
HOH
429
A
TIP
30
3
HOH
HOH
430
A
TIP
31
3
HOH
HOH
431
A
TIP
32
3
HOH
HOH
432
A
TIP
33
3
HOH
HOH
433
A
TIP
34
3
HOH
HOH
434
A
TIP
35
3
HOH
HOH
435
A
TIP
36
3
HOH
HOH
436
A
TIP
37
3
HOH
HOH
437
A
TIP
38
3
HOH
HOH
438
A
TIP
39
3
HOH
HOH
439
A
TIP
40
3
HOH
HOH
440
A
TIP
41
3
HOH
HOH
441
A
TIP
42
3
HOH
HOH
442
A
TIP
43
3
HOH
HOH
443
A
TIP
44
3
HOH
HOH
444
A
TIP
45
3
HOH
HOH
445
A
TIP
46
3
HOH
HOH
446
A
TIP
47
3
HOH
HOH
447
A
TIP
48
3
HOH
HOH
448
A
TIP
49
3
HOH
HOH
449
A
TIP
50
3
HOH
HOH
450
A
TIP
51
3
HOH
HOH
451
A
TIP
52
3
HOH
HOH
452
A
TIP
53
3
HOH
HOH
453
A
TIP
54
3
HOH
HOH
454
A
TIP
55
3
HOH
HOH
455
A
TIP
56
3
HOH
HOH
456
A
TIP
57
3
HOH
HOH
457
A
TIP
58
3
HOH
HOH
458
A
TIP
59
3
HOH
HOH
459
A
TIP
60
3
HOH
HOH
460
A
TIP
61
3
HOH
HOH
461
A
TIP
62
3
HOH
HOH
462
A
TIP
63
3
HOH
HOH
463
A
TIP
64
3
HOH
HOH
464
A
TIP
65
3
HOH
HOH
465
A
TIP
66
3
HOH
HOH
466
A
TIP
67
3
HOH
HOH
467
A
TIP
68
3
HOH
HOH
468
A
TIP
69
3
HOH
HOH
469
A
TIP
70
3
HOH
HOH
470
A
TIP
71
3
HOH
HOH
471
A
TIP
72
3
HOH
HOH
472
A
TIP
73
3
HOH
HOH
473
A
TIP
74
3
HOH
HOH
474
A
TIP
75
3
HOH
HOH
475
A
TIP
76
3
HOH
HOH
476
A
TIP
77
3
HOH
HOH
477
A
TIP
78
3
HOH
HOH
478
A
TIP
79
3
HOH
HOH
479
A
TIP
80
3
HOH
HOH
480
A
TIP
81
3
HOH
HOH
481
A
TIP
82
3
HOH
HOH
482
A
TIP
83
3
HOH
HOH
483
A
TIP
84
3
HOH
HOH
484
A
TIP
85
3
HOH
HOH
485
A
TIP
86
3
HOH
HOH
486
A
TIP
87
3
HOH
HOH
487
A
TIP
88
3
HOH
HOH
488
A
TIP
89
3
HOH
HOH
489
A
TIP
90
3
HOH
HOH
490
A
TIP
91
3
HOH
HOH
491
A
TIP
92
3
HOH
HOH
492
A
TIP
93
3
HOH
HOH
493
A
TIP
94
3
HOH
HOH
494
A
TIP
95
3
HOH
HOH
495
A
TIP
96
3
HOH
HOH
496
A
TIP
97
3
HOH
HOH
497
A
TIP
98
3
HOH
HOH
498
A
TIP
99
3
HOH
HOH
499
A
TIP
100
3
HOH
HOH
500
A
TIP
101
3
HOH
HOH
501
A
TIP
102
3
HOH
HOH
502
A
TIP
103
3
HOH
HOH
503
A
TIP
104
3
HOH
HOH
504
A
TIP
105
3
HOH
HOH
505
A
TIP
106
3
HOH
HOH
506
A
TIP
107
3
HOH
HOH
507
A
TIP
108
3
HOH
HOH
508
A
TIP
109
3
HOH
HOH
509
A
TIP
110
3
HOH
HOH
510
A
PCA
1
n
1
PCA
1
A
ARG
2
n
2
ARG
2
A
PHE
3
n
3
PHE
3
A
SER
4
n
4
SER
4
A
PRO
5
n
5
PRO
5
A
ARG
6
n
6
ARG
6
A
TYR
7
n
7
TYR
7
A
ILE
8
n
8
ILE
8
A
GLU
9
n
9
GLU
9
A
LEU
10
n
10
LEU
10
A
ALA
11
n
11
ALA
11
A
VAL
12
n
12
VAL
12
A
VAL
13
n
13
VAL
13
A
ALA
14
n
14
ALA
14
A
ASP
15
n
15
ASP
15
A
HIS
16
n
16
HIS
16
A
GLY
17
n
17
GLY
17
A
ILE
18
n
18
ILE
18
A
PHE
19
n
19
PHE
19
A
THR
20
n
20
THR
20
A
LYS
21
n
21
LYS
21
A
TYR
22
n
22
TYR
22
A
ASN
23
n
23
ASN
23
A
SER
24
n
24
SER
24
A
ASN
25
n
25
ASN
25
A
LEU
26
n
26
LEU
26
A
ASN
27
n
27
ASN
27
A
THR
28
n
28
THR
28
A
ILE
29
n
29
ILE
29
A
ARG
30
n
30
ARG
30
A
THR
31
n
31
THR
31
A
ARG
32
n
32
ARG
32
A
VAL
33
n
33
VAL
33
A
HIS
34
n
34
HIS
34
A
GLU
35
n
35
GLU
35
A
MET
36
n
36
MET
36
A
LEU
37
n
37
LEU
37
A
ASN
38
n
38
ASN
38
A
THR
39
n
39
THR
39
A
VAL
40
n
40
VAL
40
A
ASN
41
n
41
ASN
41
A
GLY
42
n
42
GLY
42
A
PHE
43
n
43
PHE
43
A
TYR
44
n
44
TYR
44
A
ARG
45
n
45
ARG
45
A
SER
46
n
46
SER
46
A
VAL
47
n
47
VAL
47
A
ASP
48
n
48
ASP
48
A
VAL
49
n
49
VAL
49
A
HIS
50
n
50
HIS
50
A
ALA
51
n
51
ALA
51
A
PRO
52
n
52
PRO
52
A
LEU
53
n
53
LEU
53
A
ALA
54
n
54
ALA
54
A
ASN
55
n
55
ASN
55
A
LEU
56
n
56
LEU
56
A
GLU
57
n
57
GLU
57
A
VAL
58
n
58
VAL
58
A
TRP
59
n
59
TRP
59
A
SER
60
n
60
SER
60
A
LYS
61
n
61
LYS
61
A
GLN
62
n
62
GLN
62
A
ASP
63
n
63
ASP
63
A
LEU
64
n
64
LEU
64
A
ILE
65
n
65
ILE
65
A
LYS
66
n
66
LYS
66
A
VAL
67
n
67
VAL
67
A
GLN
68
n
68
GLN
68
A
LYS
69
n
69
LYS
69
A
ASP
70
n
70
ASP
70
A
SER
71
n
71
SER
71
A
SER
72
n
72
SER
72
A
LYS
73
n
73
LYS
73
A
THR
74
n
74
THR
74
A
LEU
75
n
75
LEU
75
A
LYS
76
n
76
LYS
76
A
SER
77
n
77
SER
77
A
PHE
78
n
78
PHE
78
A
GLY
79
n
79
GLY
79
A
GLU
80
n
80
GLU
80
A
TRP
81
n
81
TRP
81
A
ARG
82
n
82
ARG
82
A
GLU
83
n
83
GLU
83
A
ARG
84
n
84
ARG
84
A
ASP
85
n
85
ASP
85
A
LEU
86
n
86
LEU
86
A
LEU
87
n
87
LEU
87
A
PRO
88
n
88
PRO
88
A
ARG
89
n
89
ARG
89
A
ILE
90
n
90
ILE
90
A
SER
91
n
91
SER
91
A
HIS
92
n
92
HIS
92
A
ASP
93
n
93
ASP
93
A
HIS
94
n
94
HIS
94
A
ALA
95
n
95
ALA
95
A
GLN
96
n
96
GLN
96
A
LEU
97
n
97
LEU
97
A
LEU
98
n
98
LEU
98
A
THR
99
n
99
THR
99
A
ALA
100
n
100
ALA
100
A
VAL
101
n
101
VAL
101
A
VAL
102
n
102
VAL
102
A
PHE
103
n
103
PHE
103
A
ASP
104
n
104
ASP
104
A
GLY
105
n
105
GLY
105
A
ASN
106
n
106
ASN
106
A
THR
107
n
107
THR
107
A
ILE
108
n
108
ILE
108
A
GLY
109
n
109
GLY
109
A
ARG
110
n
110
ARG
110
A
ALA
111
n
111
ALA
111
A
TYR
112
n
112
TYR
112
A
THR
113
n
113
THR
113
A
GLY
114
n
114
GLY
114
A
GLY
115
n
115
GLY
115
A
MET
116
n
116
MET
116
A
CYS
117
n
117
CYS
117
A
ASP
118
n
118
ASP
118
A
PRO
119
n
119
PRO
119
A
ARG
120
n
120
ARG
120
A
HIS
121
n
121
HIS
121
A
SER
122
n
122
SER
122
A
VAL
123
n
123
VAL
123
A
GLY
124
n
124
GLY
124
A
VAL
125
n
125
VAL
125
A
VAL
126
n
126
VAL
126
A
ARG
127
n
127
ARG
127
A
ASP
128
n
128
ASP
128
A
HIS
129
n
129
HIS
129
A
SER
130
n
130
SER
130
A
LYS
131
n
131
LYS
131
A
ASN
132
n
132
ASN
132
A
ASN
133
n
133
ASN
133
A
LEU
134
n
134
LEU
134
A
TRP
135
n
135
TRP
135
A
VAL
136
n
136
VAL
136
A
ALA
137
n
137
ALA
137
A
VAL
138
n
138
VAL
138
A
THR
139
n
139
THR
139
A
MET
140
n
140
MET
140
A
ALA
141
n
141
ALA
141
A
HIS
142
n
142
HIS
142
A
GLU
143
n
143
GLU
143
A
LEU
144
n
144
LEU
144
A
GLY
145
n
145
GLY
145
A
HIS
146
n
146
HIS
146
A
ASN
147
n
147
ASN
147
A
LEU
148
n
148
LEU
148
A
GLY
149
n
149
GLY
149
A
ILE
150
n
150
ILE
150
A
ASP
151
n
151
ASP
151
A
HIS
152
n
152
HIS
152
A
ASP
153
n
153
ASP
153
A
THR
154
n
154
THR
154
A
GLY
155
n
155
GLY
155
A
SER
156
n
156
SER
156
A
CYS
157
n
157
CYS
157
A
SER
158
n
158
SER
158
A
CYS
159
n
159
CYS
159
A
GLY
160
n
160
GLY
160
A
ALA
161
n
161
ALA
161
A
LYS
162
n
162
LYS
162
A
SER
163
n
163
SER
163
A
CYS
164
n
164
CYS
164
A
ILE
165
n
165
ILE
165
A
MET
166
n
166
MET
166
A
ALA
167
n
167
ALA
167
A
SER
168
n
168
SER
168
A
VAL
169
n
169
VAL
169
A
LEU
170
n
170
LEU
170
A
SER
171
n
171
SER
171
A
LYS
172
n
172
LYS
172
A
VAL
173
n
173
VAL
173
A
LEU
174
n
174
LEU
174
A
SER
175
n
175
SER
175
A
TYR
176
n
176
TYR
176
A
GLU
177
n
177
GLU
177
A
PHE
178
n
178
PHE
178
A
SER
179
n
179
SER
179
A
ASP
180
n
180
ASP
180
A
CYS
181
n
181
CYS
181
A
SER
182
n
182
SER
182
A
GLN
183
n
183
GLN
183
A
ASN
184
n
184
ASN
184
A
GLN
185
n
185
GLN
185
A
TYR
186
n
186
TYR
186
A
GLU
187
n
187
GLU
187
A
THR
188
n
188
THR
188
A
TYR
189
n
189
TYR
189
A
LEU
190
n
190
LEU
190
A
THR
191
n
191
THR
191
A
ASN
192
n
192
ASN
192
A
HIS
193
n
193
HIS
193
A
ASN
194
n
194
ASN
194
A
PRO
195
n
195
PRO
195
A
GLN
196
n
196
GLN
196
A
CYS
197
n
197
CYS
197
A
ILE
198
n
198
ILE
198
A
LEU
199
n
199
LEU
199
A
ASN
200
n
200
ASN
200
A
LYS
201
n
201
LYS
201
A
PRO
202
n
202
PRO
202
A
author_defined_assembly
1
monomeric
A
HIS
142
A
NE2
HIS
142
1_555
A
ZN
400
B
ZN
ZN
1_555
A
HIS
146
A
NE2
HIS
146
1_555
98.2
A
HIS
142
A
NE2
HIS
142
1_555
A
ZN
400
B
ZN
ZN
1_555
A
HIS
152
A
NE2
HIS
152
1_555
104.5
A
HIS
146
A
NE2
HIS
146
1_555
A
ZN
400
B
ZN
ZN
1_555
A
HIS
152
A
NE2
HIS
152
1_555
105.2
A
HIS
142
A
NE2
HIS
142
1_555
A
ZN
400
B
ZN
ZN
1_555
A
HOH
467
C
O
HOH
1_555
109.2
A
HIS
146
A
NE2
HIS
146
1_555
A
ZN
400
B
ZN
ZN
1_555
A
HOH
467
C
O
HOH
1_555
98.0
A
HIS
152
A
NE2
HIS
152
1_555
A
ZN
400
B
ZN
ZN
1_555
A
HOH
467
C
O
HOH
1_555
135.5
A
PCA
1
PYROGLUTAMIC ACID
A
PCA
1
GLN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ARG
6
A
N
ARG
6
A
O
HIS
50
A
O
HIS
50
A
O
ALA
54
A
O
ALA
54
A
N
LEU
10
A
N
LEU
10
A
N
VAL
13
A
N
VAL
13
A
O
LEU
98
A
O
LEU
98
A
N
LEU
97
A
N
LEU
97
A
O
VAL
126
A
O
VAL
126
A
O
VAL
125
A
O
VAL
125
A
N
ARG
110
A
N
ARG
110
A
N
SER
163
A
N
SER
163
A
O
GLU
177
A
O
GLU
177
1
A
CA
PCA
1
WRONG HAND
1
A
A
C
CD
LYS
PRO
201
202
1.76
1
A
A
OE1
O
GLU
HOH
57
452
2.07
1
A
A
O
O
HOH
HOH
467
468
2.08
1
A
A
OG
NH1
SER
ARG
71
110
2.16
1
9.65
1.10
114.20
123.85
A
A
A
CA
CB
SG
CYS
CYS
CYS
164
164
164
N
1
29.13
2.40
127.00
156.13
A
A
A
C
N
CA
LYS
PRO
PRO
201
202
202
Y
1
-44.38
2.20
120.60
76.22
A
A
A
C
N
CD
LYS
PRO
PRO
201
202
202
Y
1
21.04
2.60
112.10
133.14
A
A
A
N
CA
C
PRO
PRO
PRO
202
202
202
N
1
A
TYR
22
-99.28
39.74
1
A
ALA
51
-119.30
74.86
1
A
CYS
117
83.70
-13.53
1
A
SER
163
-170.28
144.72
1
A
ASN
194
37.12
77.60
PROTEIN_REP1.PARAM
PROTEIN1.TOP
WATER_REP.PARAM
WATER_REP.TOP
ION.PARAM
ION.TOP
29.7
-2.80
0.00
0.00
1.08
0.00
1.71
0.216
0.008
0.191
0.191
1.93
18.31
742
14911
14169
5.0
95.2
RANDOM
1182665.85
0.00
1
RESTRAINED
THROUGHOUT
0
0
MOLECULAR REPLACEMENT
PDB_ID 1QUA
FLAT MODEL
47.7738
0.306696
0.25
0.22
5.00
0.18
0.20
1.93
18.31
110
1707
1
0
1596
0.010
2.3
23.6
1.21
1.88
1.50
2.64
2.00
3.13
2.00
4.65
2.50
0.264
0.029
0.282
2.02
81
1506
6
5.1
59.3
20.0
1.9
500
1ND1
14941
49843
0.072
1
92.1
1.9
1.97
816
0.28
51.6
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
CNS
1.1
Amino acid sequence and crystal structure of BaP1, a metalloproteinase from Bothrops asper snake venom that exerts multiple tissue-damaging activities.
1
N
N
2
N
N
3
N
N
A
ASP
15
A
ASP
15
HELX_P
A
TYR
22
A
TYR
22
1
1
8
A
ASN
25
A
ASN
25
HELX_P
A
ARG
45
A
ARG
45
1
2
21
A
ASP
70
A
ASP
70
HELX_P
A
ASP
85
A
ASP
85
1
3
16
A
ASP
85
A
ASP
85
HELX_P
A
ILE
90
A
ILE
90
1
4
6
A
PHE
103
A
PHE
103
HELX_P
A
THR
107
A
THR
107
5
5
5
A
ASN
132
A
ASN
132
HELX_P
A
LEU
148
A
LEU
148
1
6
17
A
SER
179
A
SER
179
HELX_P
A
ASN
194
A
ASN
194
1
7
16
A
PRO
195
A
PRO
195
HELX_P
A
LEU
199
A
LEU
199
5
8
5
disulf
2.027
A
CYS
117
A
SG
CYS
117
1_555
A
CYS
197
A
SG
CYS
197
1_555
disulf
2.029
A
CYS
157
A
SG
CYS
157
1_555
A
CYS
181
A
SG
CYS
181
1_555
disulf
1.983
A
CYS
159
A
SG
CYS
159
1_555
A
CYS
164
A
SG
CYS
164
1_555
covale
1.314
both
A
PCA
1
A
C
PCA
1
1_555
A
ARG
2
A
N
ARG
2
1_555
metalc
2.050
A
HIS
142
A
NE2
HIS
142
1_555
A
ZN
400
B
ZN
ZN
1_555
metalc
2.122
A
HIS
146
A
NE2
HIS
146
1_555
A
ZN
400
B
ZN
ZN
1_555
metalc
1.998
A
HIS
152
A
NE2
HIS
152
1_555
A
ZN
400
B
ZN
ZN
1_555
metalc
2.250
A
ZN
400
B
ZN
ZN
1_555
A
HOH
467
C
O
HOH
1_555
TOXIN
metalloproteinase, snake venom, three-disulfide, TOXIN
A
LYS
201
A
LYS
201
1
A
PRO
202
A
PRO
202
1.35
BAP1_BOTAS
UNP
1
2
P83512
2
203
1ND1
1
202
P83512
A
1
1
202
2
5
2
parallel
parallel
parallel
parallel
anti-parallel
parallel
A
ARG
6
A
ARG
6
A
TYR
7
A
TYR
7
A
VAL
49
A
VAL
49
A
HIS
50
A
HIS
50
A
LEU
53
A
LEU
53
A
VAL
58
A
VAL
58
A
LEU
10
A
LEU
10
A
ALA
14
A
ALA
14
A
HIS
94
A
HIS
94
A
THR
99
A
THR
99
A
VAL
123
A
VAL
123
A
ARG
127
A
ARG
127
A
GLY
109
A
GLY
109
A
ALA
111
A
ALA
111
A
SER
163
A
SER
163
A
CYS
164
A
CYS
164
A
TYR
176
A
TYR
176
A
GLU
177
A
GLU
177
BINDING SITE FOR RESIDUE ZN A 400
A
ZN
400
Software
4
A
HIS
142
A
HIS
142
4
1_555
A
HIS
146
A
HIS
146
4
1_555
A
HIS
152
A
HIS
152
4
1_555
A
HOH
467
C
HOH
4
1_555
19
P 21 21 21