0.021832 0.000000 0.002549 0.000000 0.015391 0.000000 0.000000 0.000000 0.020727 0.00000 0.00000 0.00000 Whitby, F.G. Xia, G. Pickart, C.M. Hill, C.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 96.66 90.00 45.804 64.972 48.573 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CL N 75 N N N 76 S C N 77 N C N 78 N O N 79 N C N 80 N C N 81 N C N 82 N O N 83 N N N 84 N O N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 S C N 97 N C N 98 N O N 99 N C N 100 N C N 101 N C N 102 N O N 103 N O N 104 N O N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N N N 115 N C N 116 N C N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N N N 125 S C N 126 N C N 127 N O N 128 N C Y 129 N C Y 130 N N Y 131 N C Y 132 N C Y 133 N N N 134 N O N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N O N 146 N H N 147 N H N 148 N N N 149 S C N 150 N C N 151 N O N 152 S C N 153 N C N 154 N C N 155 N C N 156 N O N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N N N 171 S C N 172 N C N 173 N O N 174 N C N 175 N C N 176 N C N 177 N C N 178 N O N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N N N 193 S C N 194 N C N 195 N O N 196 N C N 197 N C N 198 N C N 199 N C N 200 N N N 201 N O N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N N N 218 S C N 219 N C N 220 N O N 221 N C N 222 N C N 223 N S N 224 N C N 225 N O N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N N N 238 S C N 239 N C N 240 N O N 241 N C N 242 N C N 243 N C N 244 N O N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N N N 255 S C N 256 N C N 257 N O N 258 N C N 259 N O N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N S N 269 N O N 270 N O N 271 N O N 272 N O N 273 N N N 274 S C N 275 N C N 276 N O N 277 R C N 278 N O N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C Y 295 N C Y 296 N C Y 297 N C Y 298 N C Y 299 N C Y 300 N C N 301 N O N 302 N O N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N N N 315 S C N 316 N C N 317 N O N 318 N C N 319 N C N 320 N C N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N doub N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N doub N 255 N doub N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N doub N 281 N sing N 282 N sing N 283 N sing N 284 N sing Y 285 N doub Y 286 N sing Y 287 N sing N 288 N sing Y 289 N doub N 290 N sing Y 291 N doub N 292 N sing Y 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N doub N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 273 34983 34991 10.1074/jbc.273.52.34983 9857030 Crystal structure of the human ubiquitin-like protein NEDD8 and interactions with ubiquitin pathway enzymes. 1998 10.2210/pdb1ndd/pdb pdb_00001ndd 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 MIRRORS IMAGE PLATE MACSCIENCE NI FILTER SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 HUMAN NEDD8 UBIQUITIN-LIKE PROTEIN MONOMER WITH 4 MOLECULES IN THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT 8573.978 PROTEIN (UBIQUITIN-LIKE PROTEIN NEDD8) 4 man polymer 35.453 CHLORIDE ION 2 syn non-polymer 96.063 SULFATE ION 4 syn non-polymer 18.015 water 193 nat water NEDD8 no no MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG A,B,C,D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample EXPRESSED IN E.COLI 9606 Homo sapiens 562 Escherichia coli BL21(DE3)PLYSS PET3A-NEDD8 1 2.1 41 4.8 pH 4.8 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_site repository Initial release Version format compliance Derived calculations Version format compliance Data collection Database references Derived calculations Refinement description 1 0 1999-02-23 1 1 2008-04-27 1 2 2011-07-13 1 3 2023-08-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BNL Y RCSB 1998-08-21 REL REL CL CHLORIDE ION SO4 SULFATE ION HOH water 1UBQ PDB ENTRY 1UBQ PDB experimental model CLI 2002 2 CL CL 2002 A CLI 2001 2 CL CL 2001 B SO4 3002 3 SO4 SO4 3002 C SO4 3003 3 SO4 SO4 3003 C SO4 3004 3 SO4 SO4 3004 C SO4 3001 3 SO4 SO4 3001 D HOH 1009 4 HOH HOH 1009 A HOH 1026 4 HOH HOH 1026 A HOH 1029 4 HOH HOH 1029 A HOH 1030 4 HOH HOH 1030 A HOH 1031 4 HOH HOH 1031 A HOH 1032 4 HOH HOH 1032 A HOH 1035 4 HOH HOH 1035 A HOH 1040 4 HOH HOH 1040 A HOH 1042 4 HOH HOH 1042 A HOH 1044 4 HOH HOH 1044 A HOH 1050 4 HOH HOH 1050 A HOH 1054 4 HOH HOH 1054 A HOH 1055 4 HOH HOH 1055 A HOH 1062 4 HOH HOH 1062 A HOH 1064 4 HOH HOH 1064 A HOH 1065 4 HOH HOH 1065 A HOH 1073 4 HOH HOH 1073 A HOH 1075 4 HOH HOH 1075 A HOH 1080 4 HOH HOH 1080 A HOH 1083 4 HOH HOH 1083 A HOH 1086 4 HOH HOH 1086 A HOH 1087 4 HOH HOH 1087 A HOH 1090 4 HOH HOH 1090 A HOH 1101 4 HOH HOH 1101 A HOH 1111 4 HOH HOH 1111 A HOH 1115 4 HOH HOH 1115 A HOH 1117 4 HOH HOH 1117 A HOH 1118 4 HOH HOH 1118 A HOH 1124 4 HOH HOH 1124 A HOH 1130 4 HOH HOH 1130 A HOH 1131 4 HOH HOH 1131 A HOH 1133 4 HOH HOH 1133 A HOH 1137 4 HOH HOH 1137 A HOH 1146 4 HOH HOH 1146 A HOH 1158 4 HOH HOH 1158 A HOH 1159 4 HOH HOH 1159 A HOH 1162 4 HOH HOH 1162 A HOH 1167 4 HOH HOH 1167 A HOH 1172 4 HOH HOH 1172 A HOH 1173 4 HOH HOH 1173 A HOH 1175 4 HOH HOH 1175 A HOH 1178 4 HOH HOH 1178 A HOH 1179 4 HOH HOH 1179 A HOH 1184 4 HOH HOH 1184 A HOH 1010 4 HOH HOH 1010 B HOH 1012 4 HOH HOH 1012 B HOH 1013 4 HOH HOH 1013 B HOH 1015 4 HOH HOH 1015 B HOH 1016 4 HOH HOH 1016 B HOH 1018 4 HOH HOH 1018 B HOH 1019 4 HOH HOH 1019 B HOH 1020 4 HOH HOH 1020 B HOH 1021 4 HOH HOH 1021 B HOH 1022 4 HOH HOH 1022 B HOH 1023 4 HOH HOH 1023 B HOH 1036 4 HOH HOH 1036 B HOH 1041 4 HOH HOH 1041 B HOH 1045 4 HOH HOH 1045 B HOH 1047 4 HOH HOH 1047 B HOH 1049 4 HOH HOH 1049 B HOH 1052 4 HOH HOH 1052 B HOH 1053 4 HOH HOH 1053 B HOH 1057 4 HOH HOH 1057 B HOH 1059 4 HOH HOH 1059 B HOH 1063 4 HOH HOH 1063 B HOH 1069 4 HOH HOH 1069 B HOH 1077 4 HOH HOH 1077 B HOH 1079 4 HOH HOH 1079 B HOH 1082 4 HOH HOH 1082 B HOH 1084 4 HOH HOH 1084 B HOH 1091 4 HOH HOH 1091 B HOH 1092 4 HOH HOH 1092 B HOH 1098 4 HOH HOH 1098 B HOH 1108 4 HOH HOH 1108 B HOH 1109 4 HOH HOH 1109 B HOH 1113 4 HOH HOH 1113 B HOH 1114 4 HOH HOH 1114 B HOH 1116 4 HOH HOH 1116 B HOH 1121 4 HOH HOH 1121 B HOH 1123 4 HOH HOH 1123 B HOH 1128 4 HOH HOH 1128 B HOH 1135 4 HOH HOH 1135 B HOH 1140 4 HOH HOH 1140 B HOH 1147 4 HOH HOH 1147 B HOH 1149 4 HOH HOH 1149 B HOH 1152 4 HOH HOH 1152 B HOH 1153 4 HOH HOH 1153 B HOH 1157 4 HOH HOH 1157 B HOH 1166 4 HOH HOH 1166 B HOH 1168 4 HOH HOH 1168 B HOH 1169 4 HOH HOH 1169 B HOH 1182 4 HOH HOH 1182 B HOH 1186 4 HOH HOH 1186 B HOH 1188 4 HOH HOH 1188 B HOH 1189 4 HOH HOH 1189 B HOH 1193 4 HOH HOH 1193 B HOH 1003 4 HOH HOH 1003 C HOH 1004 4 HOH HOH 1004 C HOH 1005 4 HOH HOH 1005 C HOH 1006 4 HOH HOH 1006 C HOH 1007 4 HOH HOH 1007 C HOH 1008 4 HOH HOH 1008 C HOH 1011 4 HOH HOH 1011 C HOH 1017 4 HOH HOH 1017 C HOH 1025 4 HOH HOH 1025 C HOH 1027 4 HOH HOH 1027 C HOH 1028 4 HOH HOH 1028 C HOH 1038 4 HOH HOH 1038 C HOH 1039 4 HOH HOH 1039 C HOH 1046 4 HOH HOH 1046 C HOH 1051 4 HOH HOH 1051 C HOH 1060 4 HOH HOH 1060 C HOH 1061 4 HOH HOH 1061 C HOH 1066 4 HOH HOH 1066 C HOH 1067 4 HOH HOH 1067 C HOH 1070 4 HOH HOH 1070 C HOH 1074 4 HOH HOH 1074 C HOH 1078 4 HOH HOH 1078 C HOH 1081 4 HOH HOH 1081 C HOH 1085 4 HOH HOH 1085 C HOH 1088 4 HOH HOH 1088 C HOH 1089 4 HOH HOH 1089 C HOH 1094 4 HOH HOH 1094 C HOH 1096 4 HOH HOH 1096 C HOH 1097 4 HOH HOH 1097 C HOH 1099 4 HOH HOH 1099 C HOH 1100 4 HOH HOH 1100 C HOH 1103 4 HOH HOH 1103 C HOH 1104 4 HOH HOH 1104 C HOH 1107 4 HOH HOH 1107 C HOH 1119 4 HOH HOH 1119 C HOH 1120 4 HOH HOH 1120 C HOH 1122 4 HOH HOH 1122 C HOH 1125 4 HOH HOH 1125 C HOH 1129 4 HOH HOH 1129 C HOH 1132 4 HOH HOH 1132 C HOH 1139 4 HOH HOH 1139 C HOH 1142 4 HOH HOH 1142 C HOH 1144 4 HOH HOH 1144 C HOH 1150 4 HOH HOH 1150 C HOH 1151 4 HOH HOH 1151 C HOH 1160 4 HOH HOH 1160 C HOH 1161 4 HOH HOH 1161 C HOH 1174 4 HOH HOH 1174 C HOH 1183 4 HOH HOH 1183 C HOH 1187 4 HOH HOH 1187 C HOH 1190 4 HOH HOH 1190 C HOH 1191 4 HOH HOH 1191 C HOH 1001 4 HOH HOH 1001 D HOH 1002 4 HOH HOH 1002 D HOH 1014 4 HOH HOH 1014 D HOH 1024 4 HOH HOH 1024 D HOH 1033 4 HOH HOH 1033 D HOH 1034 4 HOH HOH 1034 D HOH 1037 4 HOH HOH 1037 D HOH 1043 4 HOH HOH 1043 D HOH 1048 4 HOH HOH 1048 D HOH 1056 4 HOH HOH 1056 D HOH 1058 4 HOH HOH 1058 D HOH 1068 4 HOH HOH 1068 D HOH 1071 4 HOH HOH 1071 D HOH 1072 4 HOH HOH 1072 D HOH 1076 4 HOH HOH 1076 D HOH 1093 4 HOH HOH 1093 D HOH 1095 4 HOH HOH 1095 D HOH 1102 4 HOH HOH 1102 D HOH 1105 4 HOH HOH 1105 D HOH 1106 4 HOH HOH 1106 D HOH 1110 4 HOH HOH 1110 D HOH 1112 4 HOH HOH 1112 D HOH 1126 4 HOH HOH 1126 D HOH 1127 4 HOH HOH 1127 D HOH 1134 4 HOH HOH 1134 D HOH 1136 4 HOH HOH 1136 D HOH 1138 4 HOH HOH 1138 D HOH 1141 4 HOH HOH 1141 D HOH 1143 4 HOH HOH 1143 D HOH 1145 4 HOH HOH 1145 D HOH 1148 4 HOH HOH 1148 D HOH 1154 4 HOH HOH 1154 D HOH 1155 4 HOH HOH 1155 D HOH 1156 4 HOH HOH 1156 D HOH 1163 4 HOH HOH 1163 D HOH 1164 4 HOH HOH 1164 D HOH 1165 4 HOH HOH 1165 D HOH 1170 4 HOH HOH 1170 D HOH 1171 4 HOH HOH 1171 D HOH 1176 4 HOH HOH 1176 D HOH 1177 4 HOH HOH 1177 D HOH 1180 4 HOH HOH 1180 D HOH 1181 4 HOH HOH 1181 D HOH 1185 4 HOH HOH 1185 D HOH 1192 4 HOH HOH 1192 D MET 1 n 1 MET 1 A LEU 2 n 2 LEU 2 A ILE 3 n 3 ILE 3 A LYS 4 n 4 LYS 4 A VAL 5 n 5 VAL 5 A LYS 6 n 6 LYS 6 A THR 7 n 7 THR 7 A LEU 8 n 8 LEU 8 A THR 9 n 9 THR 9 A GLY 10 n 10 GLY 10 A LYS 11 n 11 LYS 11 A GLU 12 n 12 GLU 12 A ILE 13 n 13 ILE 13 A GLU 14 n 14 GLU 14 A ILE 15 n 15 ILE 15 A ASP 16 n 16 ASP 16 A ILE 17 n 17 ILE 17 A GLU 18 n 18 GLU 18 A PRO 19 n 19 PRO 19 A THR 20 n 20 THR 20 A ASP 21 n 21 ASP 21 A LYS 22 n 22 LYS 22 A VAL 23 n 23 VAL 23 A GLU 24 n 24 GLU 24 A ARG 25 n 25 ARG 25 A ILE 26 n 26 ILE 26 A LYS 27 n 27 LYS 27 A GLU 28 n 28 GLU 28 A ARG 29 n 29 ARG 29 A VAL 30 n 30 VAL 30 A GLU 31 n 31 GLU 31 A GLU 32 n 32 GLU 32 A LYS 33 n 33 LYS 33 A GLU 34 n 34 GLU 34 A GLY 35 n 35 GLY 35 A ILE 36 n 36 ILE 36 A PRO 37 n 37 PRO 37 A PRO 38 n 38 PRO 38 A GLN 39 n 39 GLN 39 A GLN 40 n 40 GLN 40 A GLN 41 n 41 GLN 41 A ARG 42 n 42 ARG 42 A LEU 43 n 43 LEU 43 A ILE 44 n 44 ILE 44 A TYR 45 n 45 TYR 45 A SER 46 n 46 SER 46 A GLY 47 n 47 GLY 47 A LYS 48 n 48 LYS 48 A GLN 49 n 49 GLN 49 A MET 50 n 50 MET 50 A ASN 51 n 51 ASN 51 A ASP 52 n 52 ASP 52 A GLU 53 n 53 GLU 53 A LYS 54 n 54 LYS 54 A THR 55 n 55 THR 55 A ALA 56 n 56 ALA 56 A ALA 57 n 57 ALA 57 A ASP 58 n 58 ASP 58 A TYR 59 n 59 TYR 59 A LYS 60 n 60 LYS 60 A ILE 61 n 61 ILE 61 A LEU 62 n 62 LEU 62 A GLY 63 n 63 GLY 63 A GLY 64 n 64 GLY 64 A SER 65 n 65 SER 65 A VAL 66 n 66 VAL 66 A LEU 67 n 67 LEU 67 A HIS 68 n 68 HIS 68 A LEU 69 n 69 LEU 69 A VAL 70 n 70 VAL 70 A LEU 71 n 71 LEU 71 A ALA 72 n 72 ALA 72 A LEU 73 n 73 LEU 73 A ARG 74 n 74 ARG 74 A n 75 75 A n 76 76 A MET 101 n 1 MET 101 B LEU 102 n 2 LEU 102 B ILE 103 n 3 ILE 103 B LYS 104 n 4 LYS 104 B VAL 105 n 5 VAL 105 B LYS 106 n 6 LYS 106 B THR 107 n 7 THR 107 B LEU 108 n 8 LEU 108 B THR 109 n 9 THR 109 B GLY 110 n 10 GLY 110 B LYS 111 n 11 LYS 111 B GLU 112 n 12 GLU 112 B ILE 113 n 13 ILE 113 B GLU 114 n 14 GLU 114 B ILE 115 n 15 ILE 115 B ASP 116 n 16 ASP 116 B ILE 117 n 17 ILE 117 B GLU 118 n 18 GLU 118 B PRO 119 n 19 PRO 119 B THR 120 n 20 THR 120 B ASP 121 n 21 ASP 121 B LYS 122 n 22 LYS 122 B VAL 123 n 23 VAL 123 B GLU 124 n 24 GLU 124 B ARG 125 n 25 ARG 125 B ILE 126 n 26 ILE 126 B LYS 127 n 27 LYS 127 B GLU 128 n 28 GLU 128 B ARG 129 n 29 ARG 129 B VAL 130 n 30 VAL 130 B GLU 131 n 31 GLU 131 B GLU 132 n 32 GLU 132 B LYS 133 n 33 LYS 133 B GLU 134 n 34 GLU 134 B GLY 135 n 35 GLY 135 B ILE 136 n 36 ILE 136 B PRO 137 n 37 PRO 137 B PRO 138 n 38 PRO 138 B GLN 139 n 39 GLN 139 B GLN 140 n 40 GLN 140 B GLN 141 n 41 GLN 141 B ARG 142 n 42 ARG 142 B LEU 143 n 43 LEU 143 B ILE 144 n 44 ILE 144 B TYR 145 n 45 TYR 145 B SER 146 n 46 SER 146 B GLY 147 n 47 GLY 147 B LYS 148 n 48 LYS 148 B GLN 149 n 49 GLN 149 B MET 150 n 50 MET 150 B ASN 151 n 51 ASN 151 B ASP 152 n 52 ASP 152 B GLU 153 n 53 GLU 153 B LYS 154 n 54 LYS 154 B THR 155 n 55 THR 155 B ALA 156 n 56 ALA 156 B ALA 157 n 57 ALA 157 B ASP 158 n 58 ASP 158 B TYR 159 n 59 TYR 159 B LYS 160 n 60 LYS 160 B ILE 161 n 61 ILE 161 B LEU 162 n 62 LEU 162 B GLY 163 n 63 GLY 163 B GLY 164 n 64 GLY 164 B SER 165 n 65 SER 165 B VAL 166 n 66 VAL 166 B LEU 167 n 67 LEU 167 B HIS 168 n 68 HIS 168 B LEU 169 n 69 LEU 169 B VAL 170 n 70 VAL 170 B LEU 171 n 71 LEU 171 B ALA 172 n 72 ALA 172 B LEU 173 n 73 LEU 173 B ARG 174 n 74 ARG 174 B GLY 175 n 75 GLY 175 B GLY 176 n 76 GLY 176 B MET 201 n 1 MET 201 C LEU 202 n 2 LEU 202 C ILE 203 n 3 ILE 203 C LYS 204 n 4 LYS 204 C VAL 205 n 5 VAL 205 C LYS 206 n 6 LYS 206 C THR 207 n 7 THR 207 C LEU 208 n 8 LEU 208 C THR 209 n 9 THR 209 C GLY 210 n 10 GLY 210 C LYS 211 n 11 LYS 211 C GLU 212 n 12 GLU 212 C ILE 213 n 13 ILE 213 C GLU 214 n 14 GLU 214 C ILE 215 n 15 ILE 215 C ASP 216 n 16 ASP 216 C ILE 217 n 17 ILE 217 C GLU 218 n 18 GLU 218 C PRO 219 n 19 PRO 219 C THR 220 n 20 THR 220 C ASP 221 n 21 ASP 221 C LYS 222 n 22 LYS 222 C VAL 223 n 23 VAL 223 C GLU 224 n 24 GLU 224 C ARG 225 n 25 ARG 225 C ILE 226 n 26 ILE 226 C LYS 227 n 27 LYS 227 C GLU 228 n 28 GLU 228 C ARG 229 n 29 ARG 229 C VAL 230 n 30 VAL 230 C GLU 231 n 31 GLU 231 C GLU 232 n 32 GLU 232 C LYS 233 n 33 LYS 233 C GLU 234 n 34 GLU 234 C GLY 235 n 35 GLY 235 C ILE 236 n 36 ILE 236 C PRO 237 n 37 PRO 237 C PRO 238 n 38 PRO 238 C GLN 239 n 39 GLN 239 C GLN 240 n 40 GLN 240 C GLN 241 n 41 GLN 241 C ARG 242 n 42 ARG 242 C LEU 243 n 43 LEU 243 C ILE 244 n 44 ILE 244 C TYR 245 n 45 TYR 245 C SER 246 n 46 SER 246 C GLY 247 n 47 GLY 247 C LYS 248 n 48 LYS 248 C GLN 249 n 49 GLN 249 C MET 250 n 50 MET 250 C ASN 251 n 51 ASN 251 C ASP 252 n 52 ASP 252 C GLU 253 n 53 GLU 253 C LYS 254 n 54 LYS 254 C THR 255 n 55 THR 255 C ALA 256 n 56 ALA 256 C ALA 257 n 57 ALA 257 C ASP 258 n 58 ASP 258 C TYR 259 n 59 TYR 259 C LYS 260 n 60 LYS 260 C ILE 261 n 61 ILE 261 C LEU 262 n 62 LEU 262 C GLY 263 n 63 GLY 263 C GLY 264 n 64 GLY 264 C SER 265 n 65 SER 265 C VAL 266 n 66 VAL 266 C LEU 267 n 67 LEU 267 C HIS 268 n 68 HIS 268 C LEU 269 n 69 LEU 269 C VAL 270 n 70 VAL 270 C LEU 271 n 71 LEU 271 C ALA 272 n 72 ALA 272 C LEU 273 n 73 LEU 273 C n 74 274 C n 75 275 C n 76 276 C MET 301 n 1 MET 301 D LEU 302 n 2 LEU 302 D ILE 303 n 3 ILE 303 D LYS 304 n 4 LYS 304 D VAL 305 n 5 VAL 305 D LYS 306 n 6 LYS 306 D THR 307 n 7 THR 307 D LEU 308 n 8 LEU 308 D THR 309 n 9 THR 309 D GLY 310 n 10 GLY 310 D LYS 311 n 11 LYS 311 D GLU 312 n 12 GLU 312 D ILE 313 n 13 ILE 313 D GLU 314 n 14 GLU 314 D ILE 315 n 15 ILE 315 D ASP 316 n 16 ASP 316 D ILE 317 n 17 ILE 317 D GLU 318 n 18 GLU 318 D PRO 319 n 19 PRO 319 D THR 320 n 20 THR 320 D ASP 321 n 21 ASP 321 D LYS 322 n 22 LYS 322 D VAL 323 n 23 VAL 323 D GLU 324 n 24 GLU 324 D ARG 325 n 25 ARG 325 D ILE 326 n 26 ILE 326 D LYS 327 n 27 LYS 327 D GLU 328 n 28 GLU 328 D ARG 329 n 29 ARG 329 D VAL 330 n 30 VAL 330 D GLU 331 n 31 GLU 331 D GLU 332 n 32 GLU 332 D LYS 333 n 33 LYS 333 D GLU 334 n 34 GLU 334 D GLY 335 n 35 GLY 335 D ILE 336 n 36 ILE 336 D PRO 337 n 37 PRO 337 D PRO 338 n 38 PRO 338 D GLN 339 n 39 GLN 339 D GLN 340 n 40 GLN 340 D GLN 341 n 41 GLN 341 D ARG 342 n 42 ARG 342 D LEU 343 n 43 LEU 343 D ILE 344 n 44 ILE 344 D TYR 345 n 45 TYR 345 D GLY 346 n 46 SER 346 D GLY 347 n 47 GLY 347 D LYS 348 n 48 LYS 348 D GLN 349 n 49 GLN 349 D MET 350 n 50 MET 350 D ASN 351 n 51 ASN 351 D ASP 352 n 52 ASP 352 D GLU 353 n 53 GLU 353 D LYS 354 n 54 LYS 354 D THR 355 n 55 THR 355 D ALA 356 n 56 ALA 356 D ALA 357 n 57 ALA 357 D ASP 358 n 58 ASP 358 D TYR 359 n 59 TYR 359 D LYS 360 n 60 LYS 360 D ILE 361 n 61 ILE 361 D LEU 362 n 62 LEU 362 D GLY 363 n 63 GLY 363 D GLY 364 n 64 GLY 364 D SER 365 n 65 SER 365 D VAL 366 n 66 VAL 366 D LEU 367 n 67 LEU 367 D HIS 368 n 68 HIS 368 D LEU 369 n 69 LEU 369 D VAL 370 n 70 VAL 370 D LEU 371 n 71 LEU 371 D ALA 372 n 72 ALA 372 D LEU 373 n 73 LEU 373 D n 74 374 D n 75 375 D n 76 376 D author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric software_defined_assembly PISA,PQS 4 tetrameric 5990 -94 13410 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ILE 13 A O ILE 13 A N VAL 5 A N VAL 5 A O LYS 4 A O LYS 4 A N LEU 67 A N LEU 67 A O HIS 68 A O HIS 68 A N ILE 44 A N ILE 44 B O ILE 113 B O ILE 13 B N VAL 105 B N VAL 5 B O LYS 104 B O LYS 4 B N LEU 167 B N LEU 67 B O HIS 168 B O HIS 68 B N ILE 144 B N ILE 44 C O ILE 213 C O ILE 13 C N VAL 205 C N VAL 5 C O LYS 204 C O LYS 4 C N LEU 267 C N LEU 67 C O HIS 268 C O HIS 68 C N ILE 244 C N ILE 44 D O ILE 313 D O ILE 13 D N VAL 305 D N VAL 5 D O LYS 304 D O LYS 4 D N LEU 367 D N LEU 67 D O HIS 368 D O HIS 68 D N ILE 344 D N ILE 44 1 D CB SER 346 D CB SER 46 1 Y 1 D OG SER 346 D OG SER 46 1 Y 1 A GLY 75 A GLY 75 1 Y 1 A GLY 76 A GLY 76 1 Y 1 C ARG 274 C ARG 74 1 Y 1 C GLY 275 C GLY 75 1 Y 1 C GLY 276 C GLY 76 1 Y 1 D ARG 374 D ARG 74 1 Y 1 D GLY 375 D GLY 75 1 Y 1 D GLY 376 D GLY 76 1 Y PARHCSDX.PRO TOPHCSDX.PRO PARAMETER.ELEMENTS TOPOLOGY.ELEMENTS SO4.PAR SO4.TOP PARAM19.ION TOPH19.ION 23.2 BULK SOLVENT MODEL USED 0.3000000 0.009 0.2190000 0.2190000 1.60 100.0 1109 36560 3.0 97.8 RANDOM 1000000.00 0.00100 1 THROUGHOUT 0.0 MOLECULAR REPLACEMENT PDB ENTRY 1UBQ 0.27 0.23 0.22 0.26 1.60 100.0 193 2564 22 0 2349 0.006 1.3 25.3 1.15 0.4600000 0.036 0.4280000 1.67 163 4243 8 3.7 94.9 21.1 1.60 20.0 1NDD 36579 -2.0 0.067 0.067 1 20 6.9 97.8 0.452 1.60 1.63 1.9 0.452 1 6.9 93.7 phasing AMoRE refinement X-PLOR 3.843 data reduction DENZO data scaling SCALEPACK STRUCTURE OF NEDD8 1 N N 1 N N 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N 3 N N 3 N N 4 N N 4 N N 4 N N 4 N N A VAL 23 A VAL 23 HELX_P A GLU 34 A GLU 34 1 1 12 A PRO 38 A PRO 38 HELX_P A GLN 40 A GLN 40 5 2 3 A ALA 56 A ALA 56 HELX_P A TYR 59 A TYR 59 5 3 4 B VAL 123 B VAL 23 HELX_P B GLU 134 B GLU 34 1 4 12 B PRO 138 B PRO 38 HELX_P B GLN 140 B GLN 40 5 5 3 C VAL 223 C VAL 23 HELX_P C GLU 234 C GLU 34 1 6 12 C PRO 238 C PRO 38 HELX_P C GLN 240 C GLN 40 5 7 3 C ALA 257 C ALA 57 HELX_P C TYR 259 C TYR 59 5 8 3 D VAL 323 D VAL 23 HELX_P D GLU 334 D GLU 34 1 9 12 D PRO 338 D PRO 38 HELX_P D GLN 340 D GLN 40 5 10 3 SIGNALING PROTEIN NEDD8, NEDD-8, UBIQUITIN-LIKE, PROTEOLYSIS, SIGNALING PROTEIN NEDD8_HUMAN UNP 1 Q15843 1 76 1NDD 1 76 Q15843 A 1 1 76 1 76 1NDD 101 176 Q15843 B 1 1 76 1 76 1NDD 201 276 Q15843 C 1 1 76 1 76 1NDD 301 376 Q15843 D 1 1 76 4 4 4 4 anti-parallel parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel parallel anti-parallel A GLU 12 A GLU 12 A ASP 16 A ASP 16 A LEU 2 A LEU 2 A LYS 6 A LYS 6 A VAL 66 A VAL 66 A LEU 71 A LEU 71 A GLN 41 A GLN 41 A ILE 44 A ILE 44 B GLU 112 B GLU 12 B ASP 116 B ASP 16 B LEU 102 B LEU 2 B THR 107 B THR 7 B VAL 166 B VAL 66 B LEU 171 B LEU 71 B GLN 141 B GLN 41 B ILE 144 B ILE 44 C GLU 212 C GLU 12 C ASP 216 C ASP 16 C LEU 202 C LEU 2 C THR 207 C THR 7 C VAL 266 C VAL 66 C LEU 271 C LEU 71 C GLN 241 C GLN 41 C ILE 244 C ILE 44 D GLU 312 D GLU 12 D ASP 316 D ASP 16 D LEU 302 D LEU 2 D LYS 306 D LYS 6 D VAL 366 D VAL 66 D LEU 371 D LEU 71 D GLN 341 D GLN 41 D ILE 344 D ILE 44 BINDING SITE FOR RESIDUE CL B 2001 B CL 2001 Software 3 BINDING SITE FOR RESIDUE CL A 2002 A CL 2002 Software 4 BINDING SITE FOR RESIDUE SO4 D 3001 D SO4 3001 Software 5 BINDING SITE FOR RESIDUE SO4 C 3002 C SO4 3002 Software 4 BINDING SITE FOR RESIDUE SO4 C 3003 C SO4 3003 Software 4 BINDING SITE FOR RESIDUE SO4 C 3004 C SO4 3004 Software 4 B LEU 171 B LEU 71 3 1_555 B HOH 1036 L HOH 3 1_555 C LEU 271 C LEU 71 3 1_555 A LEU 71 A LEU 71 4 1_555 A HOH 1054 K HOH 4 1_555 D LEU 371 D LEU 71 4 1_555 D HOH 1068 N HOH 4 1_555 D LYS 327 D LYS 27 5 1_555 D GLN 341 D GLN 41 5 1_555 D ARG 342 D ARG 42 5 1_555 D GLN 349 D GLN 49 5 1_555 D HOH 1043 N HOH 5 1_555 A SER 46 A SER 46 4 1_555 C ASN 251 C ASN 51 4 1_555 C LYS 254 C LYS 54 4 1_555 C HOH 1088 M HOH 4 1_555 C LYS 227 C LYS 27 4 1_555 C ARG 242 C ARG 42 4 1_555 C HOH 1008 M HOH 4 1_555 C HOH 1038 M HOH 4 1_555 A LYS 48 A LYS 48 4 1_555 A GLN 49 A GLN 49 4 1_555 C LYS 248 C LYS 48 4 1_555 C LYS 260 C LYS 60 4 1_555 4 P 1 21 1