1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Wu, B. Pineda-Lucena, A. Yee, A. Cort, J.R. Ramelot, T.A. Kennedy, M. Edwards, A. Arrowsmith, C.H. Northeast Structural Genomics Consortium (NESG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Protein Sci. PRCIEI 0795 0961-8368 12 2831 2837 10.1110/ps.03358203 14627743 Solution structure of ribosomal protein S28E from Methanobacterium thermoautotrophicum. 2003 10.2210/pdb1ne3/pdb pdb_00001ne3 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 7679.062 30S ribosomal protein S28E 1 man polymer no no MDDATPAEVIEVLKRTGMTGEVMQVKCRILDGRDKGRILTRNVMGPIREGDILMLLDTIREAKEIRTP MDDATPAEVIEVLKRTGMTGEVMQVKCRILDGRDKGRILTRNVMGPIREGDILMLLDTIREAKEIRTP A TT744 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Methanothermococcus Escherichia Escherichia coli sample 2186 Methanothermococcus thermolithotrophicus 469008 Escherichia coli BL21(DE3) BL21 (DE3) plasmid PET15B Northeast Structural Genomics Consortium NESG PSI, Protein Structure Initiative database_2 pdbx_database_related pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Database references Derived calculations 1 0 2003-12-23 1 1 2008-04-28 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_related.db_name Y RCSB Y RCSB 2002-12-10 REL REL structures with the lowest energy,target function 100 20 3D_15N-separated_NOESY 3D_13C-separated_NOESY 450 mM NaCl, 25 mM Phosphate buffer 6.5 ambient 298 K 1055 NOE-derived distance constraints, 132 angle constraints (PHI, PSI and CHI) torsion angle dynamics 1 lowest energy 1mM mth0256, U-15N,13C; 450 mM Nacl, 25 mM Na2PO4, 1mM Benzamidine, 1x inhibitor cooktail, 0.01% NaN3, 95% H2O, 5% D2O 95% H2O/5% D2O Gunter, P. structure solution CYANA 1.0.5 Gunter, P. refinement CYANA 1.0.5 600 Varian INOVA MET 1 n 1 MET 1 A ASP 2 n 2 ASP 2 A ASP 3 n 3 ASP 3 A ALA 4 n 4 ALA 4 A THR 5 n 5 THR 5 A PRO 6 n 6 PRO 6 A ALA 7 n 7 ALA 7 A GLU 8 n 8 GLU 8 A VAL 9 n 9 VAL 9 A ILE 10 n 10 ILE 10 A GLU 11 n 11 GLU 11 A VAL 12 n 12 VAL 12 A LEU 13 n 13 LEU 13 A LYS 14 n 14 LYS 14 A ARG 15 n 15 ARG 15 A THR 16 n 16 THR 16 A GLY 17 n 17 GLY 17 A MET 18 n 18 MET 18 A THR 19 n 19 THR 19 A GLY 20 n 20 GLY 20 A GLU 21 n 21 GLU 21 A VAL 22 n 22 VAL 22 A MET 23 n 23 MET 23 A GLN 24 n 24 GLN 24 A VAL 25 n 25 VAL 25 A LYS 26 n 26 LYS 26 A CYS 27 n 27 CYS 27 A ARG 28 n 28 ARG 28 A ILE 29 n 29 ILE 29 A LEU 30 n 30 LEU 30 A ASP 31 n 31 ASP 31 A GLY 32 n 32 GLY 32 A ARG 33 n 33 ARG 33 A ASP 34 n 34 ASP 34 A LYS 35 n 35 LYS 35 A GLY 36 n 36 GLY 36 A ARG 37 n 37 ARG 37 A ILE 38 n 38 ILE 38 A LEU 39 n 39 LEU 39 A THR 40 n 40 THR 40 A ARG 41 n 41 ARG 41 A ASN 42 n 42 ASN 42 A VAL 43 n 43 VAL 43 A MET 44 n 44 MET 44 A GLY 45 n 45 GLY 45 A PRO 46 n 46 PRO 46 A ILE 47 n 47 ILE 47 A ARG 48 n 48 ARG 48 A GLU 49 n 49 GLU 49 A GLY 50 n 50 GLY 50 A ASP 51 n 51 ASP 51 A ILE 52 n 52 ILE 52 A LEU 53 n 53 LEU 53 A MET 54 n 54 MET 54 A LEU 55 n 55 LEU 55 A LEU 56 n 56 LEU 56 A ASP 57 n 57 ASP 57 A THR 58 n 58 THR 58 A ILE 59 n 59 ILE 59 A ARG 60 n 60 ARG 60 A GLU 61 n 61 GLU 61 A ALA 62 n 62 ALA 62 A LYS 63 n 63 LYS 63 A GLU 64 n 64 GLU 64 A ILE 65 n 65 ILE 65 A ARG 66 n 66 ARG 66 A THR 67 n 67 THR 67 A PRO 68 n 68 PRO 68 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O VAL 43 A O VAL 43 A N MET 23 A N MET 23 A O LYS 26 A O LYS 26 A N GLU 11 A N GLU 11 A N ALA 7 A N ALA 7 A O LEU 53 A O LEU 53 1 A A H O ILE ARG 29 37 1.55 1 A A O H GLU LYS 11 26 1.55 1 A A O H MET VAL 23 43 1.58 2 A A O H GLU LYS 11 26 1.51 2 A A H O ILE ARG 29 37 1.52 2 A A H O VAL ASP 9 51 1.56 3 A A O H GLU LYS 11 26 1.51 3 A A H O ILE ARG 29 37 1.54 3 A A O H MET VAL 23 43 1.58 4 A A O H GLU LYS 11 26 1.48 4 A A H O ILE ARG 29 37 1.49 4 A A O H MET VAL 23 43 1.56 5 A A O H GLU LYS 11 26 1.50 5 A A H O VAL ASP 9 51 1.56 5 A A H O ILE ARG 29 37 1.56 6 A A H O ILE ARG 29 37 1.52 6 A A H O VAL ASP 9 51 1.55 6 A A O H GLU LYS 11 26 1.59 7 A A H O VAL ASP 9 51 1.48 7 A A H O ILE ARG 29 37 1.48 7 A A O H MET VAL 23 43 1.50 7 A A H O THR LEU 5 55 1.54 7 A A O H ALA LEU 7 53 1.56 7 A A O H GLU LYS 11 26 1.57 8 A A H O ILE ARG 29 37 1.53 8 A A H O VAL ASP 9 51 1.54 8 A A O H GLU LYS 11 26 1.57 9 A A H O VAL ASP 9 51 1.47 9 A A O H MET VAL 23 43 1.56 9 A A O H GLU LYS 11 26 1.59 10 A A O H GLU LYS 11 26 1.49 10 A A H O ILE ARG 29 37 1.49 10 A A O H MET VAL 23 43 1.59 11 A A H O VAL ASP 9 51 1.50 11 A A O H GLU LYS 11 26 1.53 11 A A H O ILE ARG 29 37 1.53 11 A A O H MET VAL 23 43 1.57 12 A A O H MET VAL 23 43 1.51 12 A A O H GLU LYS 11 26 1.53 12 A A H O VAL ASP 9 51 1.55 12 A A H O ILE ARG 29 37 1.58 13 A A O H GLU LYS 11 26 1.47 13 A A H O VAL ASP 9 51 1.48 13 A A H O ILE ARG 29 37 1.49 14 A A O H GLU LYS 11 26 1.49 14 A A H O ILE ARG 29 37 1.56 14 A A H O VAL ASP 9 51 1.56 15 A A O H GLU LYS 11 26 1.53 15 A A H O VAL ASP 9 51 1.53 15 A A O H MET VAL 23 43 1.54 15 A A H O ILE ARG 29 37 1.60 16 A A H O ILE ARG 29 37 1.53 16 A A O H GLU LYS 11 26 1.54 16 A A H O VAL ASP 9 51 1.54 16 A A O H MET VAL 23 43 1.57 17 A A O H GLU LYS 11 26 1.50 18 A A H O ILE ARG 29 37 1.51 18 A A O H GLU LYS 11 26 1.52 18 A A H O THR LEU 5 55 1.56 18 A A H O VAL ASP 9 51 1.57 19 A A H O VAL ASP 9 51 1.47 19 A A H O ILE ARG 29 37 1.51 19 A A O H GLU LYS 11 26 1.59 20 A A H O VAL ASP 9 51 1.50 20 A A H O ILE ARG 29 37 1.53 20 A A O H MET VAL 23 43 1.55 20 A A O H GLU LYS 11 26 1.60 1 A ASP 3 69.28 -65.50 1 A THR 16 67.82 169.11 1 A THR 19 -145.63 54.82 1 A GLU 21 -178.14 -37.30 1 A LYS 35 59.14 132.94 1 A GLU 49 -34.56 136.23 2 A ASP 3 -44.85 -81.21 2 A MET 18 76.41 -55.17 2 A LYS 35 59.21 132.36 2 A GLU 49 -35.07 136.20 3 A MET 18 60.80 158.09 3 A GLU 21 70.31 -63.43 3 A LYS 35 -26.20 121.88 3 A GLU 49 -39.22 142.22 4 A LYS 35 -24.10 133.23 4 A GLU 49 -35.95 138.60 5 A ASP 3 157.28 -65.16 5 A MET 18 80.59 -67.62 5 A GLU 21 -140.44 -66.43 5 A LYS 35 -24.52 134.90 5 A GLU 49 -30.09 134.07 6 A THR 19 44.07 -165.44 6 A LYS 35 59.97 131.49 6 A GLU 49 -37.03 134.14 7 A THR 16 66.25 -79.01 7 A MET 18 -170.43 124.71 7 A GLU 21 -156.97 -44.44 7 A LYS 35 -13.36 109.03 7 A GLU 49 -35.96 133.96 8 A THR 16 39.52 92.93 8 A MET 18 179.41 -54.32 8 A LYS 35 -24.86 133.78 8 A GLU 49 -34.66 132.29 9 A ASP 3 60.86 -170.65 9 A THR 16 -69.26 84.28 9 A MET 18 58.96 160.43 9 A THR 19 -97.60 -62.92 9 A GLU 21 -141.84 -47.15 9 A LYS 35 -2.89 105.35 9 A GLU 49 -36.38 129.39 10 A ASP 3 -49.29 94.57 10 A THR 16 57.15 105.38 10 A GLU 21 179.61 -164.46 10 A LYS 35 -23.79 130.66 10 A GLU 49 -31.40 131.58 11 A THR 16 59.46 98.17 11 A THR 19 59.46 156.33 11 A LYS 35 -23.80 131.61 11 A GLU 49 -37.17 137.09 12 A THR 16 66.59 -79.40 12 A MET 18 174.47 -52.72 12 A GLU 21 57.27 -169.78 12 A LYS 35 -23.35 131.87 12 A GLU 49 -34.59 133.80 13 A MET 18 -134.53 -50.30 13 A LYS 35 -15.13 113.33 13 A GLU 49 -39.90 135.24 14 A ASP 3 -147.72 -70.65 14 A MET 18 57.37 88.32 14 A THR 19 57.74 98.88 14 A LYS 35 -23.57 131.45 14 A GLU 49 -35.47 137.22 15 A THR 16 60.67 158.15 15 A GLU 21 -166.23 -59.52 15 A LYS 35 -24.29 134.39 15 A GLU 49 -31.06 130.37 16 A ASP 3 -159.00 -63.15 16 A THR 16 66.57 -74.95 16 A MET 18 -53.80 -176.24 16 A THR 19 58.63 113.26 16 A LYS 35 -23.65 131.85 17 A MET 18 61.65 66.27 17 A THR 19 69.68 130.40 17 A GLU 21 63.31 -178.67 17 A LYS 35 -23.21 132.10 17 A GLU 49 -38.91 137.05 18 A MET 18 -179.45 69.10 18 A GLU 21 -136.28 -53.53 18 A LYS 35 -25.77 135.59 18 A GLU 49 -37.41 137.57 19 A MET 18 43.41 -167.83 19 A LYS 35 38.30 95.80 19 A GLU 49 -34.62 134.87 20 A ASP 3 -42.75 162.07 20 A THR 16 43.10 -164.84 20 A MET 18 -59.22 100.56 20 A GLU 21 -143.63 -62.32 20 A LYS 35 -23.21 131.34 20 A GLU 49 -37.39 139.43 Solution structure of ribosomal protein S28E from Methanobacterium Thermoautotrophicum. Ontario Centre for Structural Proteomics target MTH0256_1_68; Northeast Structural Genomics Target TT744 1 N N RIBOSOME Beta protein, structural genomics, OCSP, NESG, PROTEIN STRUCTURE INITIATIVE, PSI, Northeast Structural Genomics Consortium, RIBOSOME RS28_METTH UNP 1 1 O26356 MDDATPAEVIEVLKRTGMTGEVMQVKCRILDGRDKGRILTRNVMGPIREGDILMLLDTIREAKEIRTP 1 68 1NE3 1 68 O26356 A 1 1 68 4 anti-parallel anti-parallel anti-parallel A ILE 38 A ILE 38 A VAL 43 A VAL 43 A MET 23 A MET 23 A ILE 29 A ILE 29 A THR 5 A THR 5 A LEU 13 A LEU 13 A ILE 52 A ILE 52 A LEU 55 A LEU 55 1 P 1