1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Wu, B.
Pineda-Lucena, A.
Yee, A.
Cort, J.R.
Ramelot, T.A.
Kennedy, M.
Edwards, A.
Arrowsmith, C.H.
Northeast Structural Genomics Consortium (NESG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Protein Sci.
PRCIEI
0795
0961-8368
12
2831
2837
10.1110/ps.03358203
14627743
Solution structure of ribosomal protein S28E from Methanobacterium thermoautotrophicum.
2003
10.2210/pdb1ne3/pdb
pdb_00001ne3
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
7679.062
30S ribosomal protein S28E
1
man
polymer
no
no
MDDATPAEVIEVLKRTGMTGEVMQVKCRILDGRDKGRILTRNVMGPIREGDILMLLDTIREAKEIRTP
MDDATPAEVIEVLKRTGMTGEVMQVKCRILDGRDKGRILTRNVMGPIREGDILMLLDTIREAKEIRTP
A
TT744
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Methanothermococcus
Escherichia
Escherichia coli
sample
2186
Methanothermococcus thermolithotrophicus
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
plasmid
PET15B
Northeast Structural Genomics Consortium
NESG
PSI, Protein Structure Initiative
database_2
pdbx_database_related
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
2003-12-23
1
1
2008-04-28
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_related.db_name
Y
RCSB
Y
RCSB
2002-12-10
REL
REL
structures with the lowest energy,target function
100
20
3D_15N-separated_NOESY
3D_13C-separated_NOESY
450 mM NaCl, 25 mM Phosphate buffer
6.5
ambient
298
K
1055 NOE-derived distance constraints, 132 angle constraints (PHI, PSI and CHI)
torsion angle dynamics
1
lowest energy
1mM mth0256, U-15N,13C; 450 mM Nacl, 25 mM Na2PO4, 1mM Benzamidine, 1x inhibitor cooktail, 0.01% NaN3, 95% H2O, 5% D2O
95% H2O/5% D2O
Gunter, P.
structure solution
CYANA
1.0.5
Gunter, P.
refinement
CYANA
1.0.5
600
Varian
INOVA
MET
1
n
1
MET
1
A
ASP
2
n
2
ASP
2
A
ASP
3
n
3
ASP
3
A
ALA
4
n
4
ALA
4
A
THR
5
n
5
THR
5
A
PRO
6
n
6
PRO
6
A
ALA
7
n
7
ALA
7
A
GLU
8
n
8
GLU
8
A
VAL
9
n
9
VAL
9
A
ILE
10
n
10
ILE
10
A
GLU
11
n
11
GLU
11
A
VAL
12
n
12
VAL
12
A
LEU
13
n
13
LEU
13
A
LYS
14
n
14
LYS
14
A
ARG
15
n
15
ARG
15
A
THR
16
n
16
THR
16
A
GLY
17
n
17
GLY
17
A
MET
18
n
18
MET
18
A
THR
19
n
19
THR
19
A
GLY
20
n
20
GLY
20
A
GLU
21
n
21
GLU
21
A
VAL
22
n
22
VAL
22
A
MET
23
n
23
MET
23
A
GLN
24
n
24
GLN
24
A
VAL
25
n
25
VAL
25
A
LYS
26
n
26
LYS
26
A
CYS
27
n
27
CYS
27
A
ARG
28
n
28
ARG
28
A
ILE
29
n
29
ILE
29
A
LEU
30
n
30
LEU
30
A
ASP
31
n
31
ASP
31
A
GLY
32
n
32
GLY
32
A
ARG
33
n
33
ARG
33
A
ASP
34
n
34
ASP
34
A
LYS
35
n
35
LYS
35
A
GLY
36
n
36
GLY
36
A
ARG
37
n
37
ARG
37
A
ILE
38
n
38
ILE
38
A
LEU
39
n
39
LEU
39
A
THR
40
n
40
THR
40
A
ARG
41
n
41
ARG
41
A
ASN
42
n
42
ASN
42
A
VAL
43
n
43
VAL
43
A
MET
44
n
44
MET
44
A
GLY
45
n
45
GLY
45
A
PRO
46
n
46
PRO
46
A
ILE
47
n
47
ILE
47
A
ARG
48
n
48
ARG
48
A
GLU
49
n
49
GLU
49
A
GLY
50
n
50
GLY
50
A
ASP
51
n
51
ASP
51
A
ILE
52
n
52
ILE
52
A
LEU
53
n
53
LEU
53
A
MET
54
n
54
MET
54
A
LEU
55
n
55
LEU
55
A
LEU
56
n
56
LEU
56
A
ASP
57
n
57
ASP
57
A
THR
58
n
58
THR
58
A
ILE
59
n
59
ILE
59
A
ARG
60
n
60
ARG
60
A
GLU
61
n
61
GLU
61
A
ALA
62
n
62
ALA
62
A
LYS
63
n
63
LYS
63
A
GLU
64
n
64
GLU
64
A
ILE
65
n
65
ILE
65
A
ARG
66
n
66
ARG
66
A
THR
67
n
67
THR
67
A
PRO
68
n
68
PRO
68
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
43
A
O
VAL
43
A
N
MET
23
A
N
MET
23
A
O
LYS
26
A
O
LYS
26
A
N
GLU
11
A
N
GLU
11
A
N
ALA
7
A
N
ALA
7
A
O
LEU
53
A
O
LEU
53
1
A
A
H
O
ILE
ARG
29
37
1.55
1
A
A
O
H
GLU
LYS
11
26
1.55
1
A
A
O
H
MET
VAL
23
43
1.58
2
A
A
O
H
GLU
LYS
11
26
1.51
2
A
A
H
O
ILE
ARG
29
37
1.52
2
A
A
H
O
VAL
ASP
9
51
1.56
3
A
A
O
H
GLU
LYS
11
26
1.51
3
A
A
H
O
ILE
ARG
29
37
1.54
3
A
A
O
H
MET
VAL
23
43
1.58
4
A
A
O
H
GLU
LYS
11
26
1.48
4
A
A
H
O
ILE
ARG
29
37
1.49
4
A
A
O
H
MET
VAL
23
43
1.56
5
A
A
O
H
GLU
LYS
11
26
1.50
5
A
A
H
O
VAL
ASP
9
51
1.56
5
A
A
H
O
ILE
ARG
29
37
1.56
6
A
A
H
O
ILE
ARG
29
37
1.52
6
A
A
H
O
VAL
ASP
9
51
1.55
6
A
A
O
H
GLU
LYS
11
26
1.59
7
A
A
H
O
VAL
ASP
9
51
1.48
7
A
A
H
O
ILE
ARG
29
37
1.48
7
A
A
O
H
MET
VAL
23
43
1.50
7
A
A
H
O
THR
LEU
5
55
1.54
7
A
A
O
H
ALA
LEU
7
53
1.56
7
A
A
O
H
GLU
LYS
11
26
1.57
8
A
A
H
O
ILE
ARG
29
37
1.53
8
A
A
H
O
VAL
ASP
9
51
1.54
8
A
A
O
H
GLU
LYS
11
26
1.57
9
A
A
H
O
VAL
ASP
9
51
1.47
9
A
A
O
H
MET
VAL
23
43
1.56
9
A
A
O
H
GLU
LYS
11
26
1.59
10
A
A
O
H
GLU
LYS
11
26
1.49
10
A
A
H
O
ILE
ARG
29
37
1.49
10
A
A
O
H
MET
VAL
23
43
1.59
11
A
A
H
O
VAL
ASP
9
51
1.50
11
A
A
O
H
GLU
LYS
11
26
1.53
11
A
A
H
O
ILE
ARG
29
37
1.53
11
A
A
O
H
MET
VAL
23
43
1.57
12
A
A
O
H
MET
VAL
23
43
1.51
12
A
A
O
H
GLU
LYS
11
26
1.53
12
A
A
H
O
VAL
ASP
9
51
1.55
12
A
A
H
O
ILE
ARG
29
37
1.58
13
A
A
O
H
GLU
LYS
11
26
1.47
13
A
A
H
O
VAL
ASP
9
51
1.48
13
A
A
H
O
ILE
ARG
29
37
1.49
14
A
A
O
H
GLU
LYS
11
26
1.49
14
A
A
H
O
ILE
ARG
29
37
1.56
14
A
A
H
O
VAL
ASP
9
51
1.56
15
A
A
O
H
GLU
LYS
11
26
1.53
15
A
A
H
O
VAL
ASP
9
51
1.53
15
A
A
O
H
MET
VAL
23
43
1.54
15
A
A
H
O
ILE
ARG
29
37
1.60
16
A
A
H
O
ILE
ARG
29
37
1.53
16
A
A
O
H
GLU
LYS
11
26
1.54
16
A
A
H
O
VAL
ASP
9
51
1.54
16
A
A
O
H
MET
VAL
23
43
1.57
17
A
A
O
H
GLU
LYS
11
26
1.50
18
A
A
H
O
ILE
ARG
29
37
1.51
18
A
A
O
H
GLU
LYS
11
26
1.52
18
A
A
H
O
THR
LEU
5
55
1.56
18
A
A
H
O
VAL
ASP
9
51
1.57
19
A
A
H
O
VAL
ASP
9
51
1.47
19
A
A
H
O
ILE
ARG
29
37
1.51
19
A
A
O
H
GLU
LYS
11
26
1.59
20
A
A
H
O
VAL
ASP
9
51
1.50
20
A
A
H
O
ILE
ARG
29
37
1.53
20
A
A
O
H
MET
VAL
23
43
1.55
20
A
A
O
H
GLU
LYS
11
26
1.60
1
A
ASP
3
69.28
-65.50
1
A
THR
16
67.82
169.11
1
A
THR
19
-145.63
54.82
1
A
GLU
21
-178.14
-37.30
1
A
LYS
35
59.14
132.94
1
A
GLU
49
-34.56
136.23
2
A
ASP
3
-44.85
-81.21
2
A
MET
18
76.41
-55.17
2
A
LYS
35
59.21
132.36
2
A
GLU
49
-35.07
136.20
3
A
MET
18
60.80
158.09
3
A
GLU
21
70.31
-63.43
3
A
LYS
35
-26.20
121.88
3
A
GLU
49
-39.22
142.22
4
A
LYS
35
-24.10
133.23
4
A
GLU
49
-35.95
138.60
5
A
ASP
3
157.28
-65.16
5
A
MET
18
80.59
-67.62
5
A
GLU
21
-140.44
-66.43
5
A
LYS
35
-24.52
134.90
5
A
GLU
49
-30.09
134.07
6
A
THR
19
44.07
-165.44
6
A
LYS
35
59.97
131.49
6
A
GLU
49
-37.03
134.14
7
A
THR
16
66.25
-79.01
7
A
MET
18
-170.43
124.71
7
A
GLU
21
-156.97
-44.44
7
A
LYS
35
-13.36
109.03
7
A
GLU
49
-35.96
133.96
8
A
THR
16
39.52
92.93
8
A
MET
18
179.41
-54.32
8
A
LYS
35
-24.86
133.78
8
A
GLU
49
-34.66
132.29
9
A
ASP
3
60.86
-170.65
9
A
THR
16
-69.26
84.28
9
A
MET
18
58.96
160.43
9
A
THR
19
-97.60
-62.92
9
A
GLU
21
-141.84
-47.15
9
A
LYS
35
-2.89
105.35
9
A
GLU
49
-36.38
129.39
10
A
ASP
3
-49.29
94.57
10
A
THR
16
57.15
105.38
10
A
GLU
21
179.61
-164.46
10
A
LYS
35
-23.79
130.66
10
A
GLU
49
-31.40
131.58
11
A
THR
16
59.46
98.17
11
A
THR
19
59.46
156.33
11
A
LYS
35
-23.80
131.61
11
A
GLU
49
-37.17
137.09
12
A
THR
16
66.59
-79.40
12
A
MET
18
174.47
-52.72
12
A
GLU
21
57.27
-169.78
12
A
LYS
35
-23.35
131.87
12
A
GLU
49
-34.59
133.80
13
A
MET
18
-134.53
-50.30
13
A
LYS
35
-15.13
113.33
13
A
GLU
49
-39.90
135.24
14
A
ASP
3
-147.72
-70.65
14
A
MET
18
57.37
88.32
14
A
THR
19
57.74
98.88
14
A
LYS
35
-23.57
131.45
14
A
GLU
49
-35.47
137.22
15
A
THR
16
60.67
158.15
15
A
GLU
21
-166.23
-59.52
15
A
LYS
35
-24.29
134.39
15
A
GLU
49
-31.06
130.37
16
A
ASP
3
-159.00
-63.15
16
A
THR
16
66.57
-74.95
16
A
MET
18
-53.80
-176.24
16
A
THR
19
58.63
113.26
16
A
LYS
35
-23.65
131.85
17
A
MET
18
61.65
66.27
17
A
THR
19
69.68
130.40
17
A
GLU
21
63.31
-178.67
17
A
LYS
35
-23.21
132.10
17
A
GLU
49
-38.91
137.05
18
A
MET
18
-179.45
69.10
18
A
GLU
21
-136.28
-53.53
18
A
LYS
35
-25.77
135.59
18
A
GLU
49
-37.41
137.57
19
A
MET
18
43.41
-167.83
19
A
LYS
35
38.30
95.80
19
A
GLU
49
-34.62
134.87
20
A
ASP
3
-42.75
162.07
20
A
THR
16
43.10
-164.84
20
A
MET
18
-59.22
100.56
20
A
GLU
21
-143.63
-62.32
20
A
LYS
35
-23.21
131.34
20
A
GLU
49
-37.39
139.43
Solution structure of ribosomal protein S28E from Methanobacterium Thermoautotrophicum. Ontario Centre for Structural Proteomics target MTH0256_1_68; Northeast Structural Genomics Target TT744
1
N
N
RIBOSOME
Beta protein, structural genomics, OCSP, NESG, PROTEIN STRUCTURE INITIATIVE, PSI, Northeast Structural Genomics Consortium, RIBOSOME
RS28_METTH
UNP
1
1
O26356
MDDATPAEVIEVLKRTGMTGEVMQVKCRILDGRDKGRILTRNVMGPIREGDILMLLDTIREAKEIRTP
1
68
1NE3
1
68
O26356
A
1
1
68
4
anti-parallel
anti-parallel
anti-parallel
A
ILE
38
A
ILE
38
A
VAL
43
A
VAL
43
A
MET
23
A
MET
23
A
ILE
29
A
ILE
29
A
THR
5
A
THR
5
A
LEU
13
A
LEU
13
A
ILE
52
A
ILE
52
A
LEU
55
A
LEU
55
1
P 1