1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Wu, B. Pineda-Lucena, A. Yee, A. Cort, J. Kennedy, M.A. Edwards, A.M. Arrowsmith, C.H. Northeast Structural Genomics Consortium (NESG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Solution structure of hypothetical protein dimer encoded by the Yoag gene from Escherichia coli 10.2210/pdb1nei/pdb pdb_00001nei 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 6612.253 hypothetical protein yoaG 2 man polymer no no MGKATYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVNTVRSYDTENEHDVCGW MGKATYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVNTVRSYDTENEHDVCGW A,B ET94 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia Escherichia coli sample 562 Escherichia coli 469008 Escherichia coli BL21(DE3) BL21 (DE3) plasmid PET15B Northeast Structural Genomics Consortium NESG PSI, Protein Structure Initiative database_2 pdbx_database_related pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Database references Derived calculations 1 0 2004-04-13 1 1 2008-04-28 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_related.db_name Y RCSB Y RCSB 2002-12-11 REL REL structures with the lowest energy,target function 100 19 3D_13C-separated_NOESY 3D_15N-separated_NOESY 450 mM NaCl, 25 mM phosphate buffer 6.5 ambient 298 K 2609 NOE-derived distance constraints, 180 dihedral angle constraints (PHI and PSI) torsion angle dynamics 1 lowest energy 1 MM ec264, U-15N, 13C; 450 mM NaCl, 25 mM Na2PO4, 1 mM Benzamidine, 1 x inhibitor cocktail, 0.01% NaN3 95% H2O/5% D2O Gunter, P. structure solution CYANA 1.0.5 Gunter, P. refinement CYANA 1.0.5 600 Varian INOVA MET 1 n 1 MET 1 A GLY 2 n 2 GLY 2 A LYS 3 n 3 LYS 3 A ALA 4 n 4 ALA 4 A THR 5 n 5 THR 5 A TYR 6 n 6 TYR 6 A THR 7 n 7 THR 7 A VAL 8 n 8 VAL 8 A THR 9 n 9 THR 9 A VAL 10 n 10 VAL 10 A THR 11 n 11 THR 11 A ASN 12 n 12 ASN 12 A ASN 13 n 13 ASN 13 A SER 14 n 14 SER 14 A ASN 15 n 15 ASN 15 A GLY 16 n 16 GLY 16 A VAL 17 n 17 VAL 17 A SER 18 n 18 SER 18 A VAL 19 n 19 VAL 19 A ASP 20 n 20 ASP 20 A TYR 21 n 21 TYR 21 A GLU 22 n 22 GLU 22 A THR 23 n 23 THR 23 A GLU 24 n 24 GLU 24 A THR 25 n 25 THR 25 A PRO 26 n 26 PRO 26 A MET 27 n 27 MET 27 A THR 28 n 28 THR 28 A LEU 29 n 29 LEU 29 A LEU 30 n 30 LEU 30 A VAL 31 n 31 VAL 31 A PRO 32 n 32 PRO 32 A GLU 33 n 33 GLU 33 A VAL 34 n 34 VAL 34 A ALA 35 n 35 ALA 35 A ALA 36 n 36 ALA 36 A GLU 37 n 37 GLU 37 A VAL 38 n 38 VAL 38 A ILE 39 n 39 ILE 39 A LYS 40 n 40 LYS 40 A ASP 41 n 41 ASP 41 A LEU 42 n 42 LEU 42 A VAL 43 n 43 VAL 43 A ASN 44 n 44 ASN 44 A THR 45 n 45 THR 45 A VAL 46 n 46 VAL 46 A ARG 47 n 47 ARG 47 A SER 48 n 48 SER 48 A TYR 49 n 49 TYR 49 A ASP 50 n 50 ASP 50 A THR 51 n 51 THR 51 A GLU 52 n 52 GLU 52 A ASN 53 n 53 ASN 53 A GLU 54 n 54 GLU 54 A HIS 55 n 55 HIS 55 A ASP 56 n 56 ASP 56 A VAL 57 n 57 VAL 57 A CYS 58 n 58 CYS 58 A GLY 59 n 59 GLY 59 A TRP 60 n 60 TRP 60 A MET 201 n 1 MET 201 B GLY 202 n 2 GLY 202 B LYS 203 n 3 LYS 203 B ALA 204 n 4 ALA 204 B THR 205 n 5 THR 205 B TYR 206 n 6 TYR 206 B THR 207 n 7 THR 207 B VAL 208 n 8 VAL 208 B THR 209 n 9 THR 209 B VAL 210 n 10 VAL 210 B THR 211 n 11 THR 211 B ASN 212 n 12 ASN 212 B ASN 213 n 13 ASN 213 B SER 214 n 14 SER 214 B ASN 215 n 15 ASN 215 B GLY 216 n 16 GLY 216 B VAL 217 n 17 VAL 217 B SER 218 n 18 SER 218 B VAL 219 n 19 VAL 219 B ASP 220 n 20 ASP 220 B TYR 221 n 21 TYR 221 B GLU 222 n 22 GLU 222 B THR 223 n 23 THR 223 B GLU 224 n 24 GLU 224 B THR 225 n 25 THR 225 B PRO 226 n 26 PRO 226 B MET 227 n 27 MET 227 B THR 228 n 28 THR 228 B LEU 229 n 29 LEU 229 B LEU 230 n 30 LEU 230 B VAL 231 n 31 VAL 231 B PRO 232 n 32 PRO 232 B GLU 233 n 33 GLU 233 B VAL 234 n 34 VAL 234 B ALA 235 n 35 ALA 235 B ALA 236 n 36 ALA 236 B GLU 237 n 37 GLU 237 B VAL 238 n 38 VAL 238 B ILE 239 n 39 ILE 239 B LYS 240 n 40 LYS 240 B ASP 241 n 41 ASP 241 B LEU 242 n 42 LEU 242 B VAL 243 n 43 VAL 243 B ASN 244 n 44 ASN 244 B THR 245 n 45 THR 245 B VAL 246 n 46 VAL 246 B ARG 247 n 47 ARG 247 B SER 248 n 48 SER 248 B TYR 249 n 49 TYR 249 B ASP 250 n 50 ASP 250 B THR 251 n 51 THR 251 B GLU 252 n 52 GLU 252 B ASN 253 n 53 ASN 253 B GLU 254 n 54 GLU 254 B HIS 255 n 55 HIS 255 B ASP 256 n 56 ASP 256 B VAL 257 n 57 VAL 257 B CYS 258 n 58 CYS 258 B GLY 259 n 59 GLY 259 B TRP 260 n 60 TRP 260 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O VAL 19 A O VAL 19 A N VAL 10 A N VAL 10 A N THR 11 A N THR 11 B O THR 207 B O THR 7 B N VAL 210 B N VAL 10 B O VAL 219 B O VAL 19 1 B B O H PRO ALA 232 236 1.43 1 A A O H PRO ALA 32 36 1.46 1 B B O H LYS ASN 240 244 1.47 1 A A O H LYS ASN 40 44 1.48 1 A A H O ASN VAL 12 17 1.55 1 B B H O VAL VAL 210 219 1.58 1 B B O H GLU ASP 237 241 1.58 1 A A H O VAL VAL 10 19 1.60 2 A A O H PRO ALA 32 36 1.44 2 B B O H PRO ALA 232 236 1.45 2 B B O H LYS ASN 240 244 1.48 2 A A O H LYS ASN 40 44 1.48 2 B B H O VAL VAL 210 219 1.51 2 B B H O ASN VAL 212 217 1.56 2 A B O H THR THR 9 209 1.56 2 A A H O VAL VAL 10 19 1.58 2 B B O H GLU ASP 237 241 1.60 3 B B O H PRO ALA 232 236 1.41 3 A A O H PRO ALA 32 36 1.45 3 B B O H LYS ASN 240 244 1.45 3 A A O H LYS ASN 40 44 1.49 3 A A O H ARG THR 47 51 1.52 3 B B H O VAL VAL 210 219 1.55 3 B B O H GLU ASP 237 241 1.58 3 A A H O ASN VAL 12 17 1.58 3 A B O H THR THR 9 209 1.59 3 A B O H THR THR 11 207 1.60 4 B B O H PRO ALA 232 236 1.41 4 A A O H PRO ALA 32 36 1.43 4 B B O H LYS ASN 240 244 1.51 4 A A O H LYS ASN 40 44 1.53 4 A A O H GLU ASP 37 41 1.57 4 B B H O VAL VAL 210 219 1.58 4 B B O H GLU ASP 237 241 1.58 4 A A H O VAL VAL 10 19 1.58 4 A B O H THR THR 9 209 1.59 4 A A O H ALA LYS 36 40 1.60 5 B B O H PRO ALA 232 236 1.40 5 A A O H PRO ALA 32 36 1.43 5 B B O H LYS ASN 240 244 1.46 5 A A O H LYS ASN 40 44 1.47 5 B B H O VAL VAL 210 219 1.50 5 A A H O ASN VAL 12 17 1.54 5 B B O HG THR SER 245 248 1.56 5 A B O H THR THR 9 209 1.58 5 A A O H ALA LYS 36 40 1.59 5 B B O H GLU ASP 237 241 1.60 6 B B O H PRO ALA 232 236 1.41 6 B B O H LYS ASN 240 244 1.44 6 A A O H PRO ALA 32 36 1.44 6 A A O H LYS ASN 40 44 1.49 6 A A H O VAL VAL 10 19 1.50 6 B B H O VAL VAL 210 219 1.53 6 A A HG1 OD1 THR ASP 9 20 1.53 6 A B O H THR THR 9 209 1.54 6 B B O H TYR THR 206 223 1.54 6 A A O H ALA LYS 36 40 1.59 6 B B O H GLU ASP 237 241 1.60 6 B B O H ALA ILE 235 239 1.60 7 B B O H PRO ALA 232 236 1.41 7 A A O H PRO ALA 32 36 1.46 7 B B O H LYS ASN 240 244 1.48 7 A A O H LYS ASN 40 44 1.49 7 B B H O VAL VAL 210 219 1.55 7 A A H O ASN VAL 12 17 1.56 7 A B O H THR THR 9 209 1.56 7 A A O H ARG THR 47 51 1.59 7 B B O H GLU ASP 237 241 1.60 8 B B O H PRO ALA 232 236 1.44 8 A A O H LYS ASN 40 44 1.45 8 A A O H PRO ALA 32 36 1.46 8 B B O H LYS ASN 240 244 1.47 8 A A H O VAL VAL 10 19 1.56 8 A B O H THR THR 9 209 1.57 8 A B O H THR ASN 5 213 1.58 8 B B O H ALA ILE 235 239 1.59 8 B B H O VAL VAL 210 219 1.59 9 B B O H PRO ALA 232 236 1.42 9 B B O H LYS ASN 240 244 1.44 9 A A O H PRO ALA 32 36 1.46 9 A A O H LYS ASN 40 44 1.50 9 B B H O VAL VAL 210 219 1.53 9 A A HH OG1 TYR THR 21 45 1.54 9 A B O H THR THR 9 209 1.58 9 B B O H GLU ASP 237 241 1.59 9 A A H O VAL VAL 10 19 1.60 9 A A O H ALA LYS 36 40 1.60 10 B B O H PRO ALA 232 236 1.41 10 A A O H LYS ASN 40 44 1.46 10 A A O H PRO ALA 32 36 1.49 10 B B O H LYS ASN 240 244 1.49 10 B B H O VAL VAL 210 219 1.54 10 B B H O ASN VAL 212 217 1.57 10 B B O H ALA ILE 235 239 1.59 10 A B O H THR THR 11 207 1.59 10 B B O H GLU ASP 237 241 1.60 11 B B O H LYS ASN 240 244 1.41 11 B B O H PRO ALA 232 236 1.43 11 A A O H PRO ALA 32 36 1.46 11 A A O H LYS ASN 40 44 1.47 11 B B HH O TYR LEU 221 242 1.50 11 A A H O VAL VAL 10 19 1.56 11 B B O H GLU ASP 237 241 1.57 12 B B O H PRO ALA 232 236 1.42 12 B B O H LYS ASN 240 244 1.43 12 A A O H PRO ALA 32 36 1.44 12 A A O H LYS ASN 40 44 1.48 12 A A H O VAL VAL 10 19 1.56 12 B B O H GLU ASP 237 241 1.59 13 B B O H PRO ALA 232 236 1.41 13 B B O H LYS ASN 240 244 1.44 13 A A O H PRO ALA 32 36 1.46 13 A A O H LYS ASN 40 44 1.49 13 B B O H GLU ASP 237 241 1.59 13 A A O H GLU ASP 37 41 1.60 14 B B O H PRO ALA 232 236 1.43 14 A A O H PRO ALA 32 36 1.44 14 B B O H LYS ASN 240 244 1.45 14 A A O H LYS ASN 40 44 1.51 14 B B H O VAL VAL 210 219 1.52 14 A A H O VAL VAL 10 19 1.55 14 A B O H THR THR 9 209 1.56 14 B B O H ALA ILE 235 239 1.57 14 B B O H GLU ASP 237 241 1.59 14 A A O H GLU ASP 37 41 1.59 15 A A O H LYS ASN 40 44 1.43 15 B B O H PRO ALA 232 236 1.45 15 B B O H LYS ASN 240 244 1.45 15 A A O H PRO ALA 32 36 1.46 15 B B H O VAL VAL 210 219 1.58 15 B B O H GLU ASP 237 241 1.58 15 A A O H VAL TYR 8 21 1.59 16 B B O H PRO ALA 232 236 1.41 16 A A O H PRO ALA 32 36 1.44 16 B B O H LYS ASN 240 244 1.45 16 A A O H LYS ASN 40 44 1.45 16 B B H O VAL VAL 210 219 1.50 16 A B O H THR THR 9 209 1.55 16 A A H O ASN VAL 12 17 1.56 16 B B O H GLU ASP 237 241 1.59 17 A A O H LYS ASN 40 44 1.44 17 B B O H PRO ALA 232 236 1.45 17 A A O H PRO ALA 32 36 1.46 17 B B O H LYS ASN 240 244 1.48 17 A B O H THR THR 9 209 1.54 17 B B H O VAL VAL 210 219 1.55 17 B B O H ALA ILE 235 239 1.57 17 B B O H GLU ASP 237 241 1.58 17 A A O H ALA ILE 35 39 1.60 18 B B O H PRO ALA 232 236 1.43 18 A A O H PRO ALA 32 36 1.45 18 B B O H LYS ASN 240 244 1.47 18 A A O H LYS ASN 40 44 1.51 18 B B H O VAL VAL 210 219 1.51 18 A B O H THR THR 9 209 1.57 18 B B O H GLU ASP 237 241 1.59 18 A A H O ASN VAL 12 17 1.59 18 A A H O VAL VAL 10 19 1.59 19 B B O H LYS ASN 240 244 1.40 19 B B O H PRO ALA 232 236 1.42 19 A A O H PRO ALA 32 36 1.44 19 A A O H LYS ASN 40 44 1.48 19 B B O H GLU ASP 237 241 1.58 19 A B O H THR THR 11 207 1.59 19 A A H O VAL VAL 10 19 1.60 19 B B O H ALA ILE 235 239 1.60 1 A PRO 26 -75.11 -90.85 1 A GLU 52 80.23 -57.57 1 A GLU 54 27.07 83.03 1 A HIS 55 80.33 147.69 1 A CYS 58 -153.68 -72.52 1 B PRO 226 -75.01 -84.03 1 B CYS 258 -163.34 58.44 2 A PRO 26 -74.97 -87.46 2 A GLU 54 -114.19 51.46 2 A HIS 55 -146.56 -57.77 2 A CYS 58 -163.46 -46.75 2 B PRO 226 -75.08 -84.54 2 B CYS 258 62.04 161.65 3 A PRO 26 -74.98 -88.79 3 A GLU 52 75.20 -61.11 3 A GLU 54 -49.62 163.42 3 A HIS 55 51.35 99.15 3 A CYS 58 -69.88 88.46 3 B PRO 226 -75.10 -83.73 3 B CYS 258 69.41 154.98 4 A PRO 26 -75.03 -90.29 4 A GLU 52 -61.08 -96.68 4 A HIS 55 -167.94 -74.37 4 A CYS 58 -133.52 -62.39 4 B PRO 226 -74.95 -86.03 4 B GLU 252 -95.66 53.67 4 B GLU 254 37.98 -157.60 4 B HIS 255 -173.53 -65.32 4 B CYS 258 -120.57 -64.56 5 A PRO 26 -75.05 -91.10 5 A HIS 55 161.43 67.18 5 A CYS 58 -148.32 56.19 5 B PRO 226 -74.98 -84.63 5 B HIS 255 63.53 149.25 6 A PRO 26 -75.02 -87.53 6 A HIS 55 -151.49 -80.55 6 A CYS 58 -135.32 -56.05 6 B PRO 226 -75.10 -83.20 6 B ASP 250 -104.27 65.43 6 B HIS 255 73.20 -61.01 7 A PRO 26 -74.98 -85.46 7 A GLU 52 54.01 101.29 7 A HIS 55 -173.90 -74.85 7 A CYS 58 -126.24 -59.73 7 B PRO 226 -75.04 -83.45 7 B HIS 255 -175.65 133.90 7 B CYS 258 -113.60 69.13 8 A PRO 26 -75.00 -88.27 8 A ASP 50 -151.96 85.10 8 A GLU 54 -112.52 72.10 8 A HIS 55 -161.42 -70.73 8 B PRO 226 -74.97 -87.93 8 B GLU 252 -93.80 50.09 8 B GLU 254 38.84 -159.10 8 B CYS 258 -67.49 78.16 9 A PRO 26 -74.99 -88.70 9 A HIS 55 50.70 -101.58 9 B PRO 226 -75.02 -84.50 9 B GLU 252 -92.32 54.47 9 B HIS 255 -170.45 146.19 10 A PRO 26 -75.03 -86.52 10 A GLU 52 -67.76 -81.15 10 A GLU 54 -94.61 51.49 10 A HIS 55 -146.38 -59.97 10 A CYS 58 178.71 -46.70 10 B PRO 226 -75.00 -82.80 10 B CYS 258 -138.17 -64.10 11 A PRO 26 -75.13 -89.55 11 A GLU 54 33.29 38.15 11 A HIS 55 -174.97 -168.90 11 A CYS 58 -141.05 -52.16 11 B PRO 226 -75.04 -84.39 11 B CYS 258 -107.86 -75.63 12 A PRO 26 -75.02 -86.15 12 A GLU 52 -49.00 177.64 12 A HIS 55 -164.52 -72.90 12 A CYS 58 -161.37 44.70 12 B PRO 226 -75.10 -83.83 12 B CYS 258 -146.01 58.02 13 A PRO 26 -74.97 -88.06 13 A HIS 55 70.48 -74.65 13 B PRO 226 -74.97 -85.18 13 B HIS 255 -171.57 -62.97 14 A PRO 26 -74.97 -90.59 14 A HIS 55 63.03 -83.44 14 B PRO 226 -74.93 -80.43 14 B GLU 254 -106.60 54.81 15 A PRO 26 -74.97 -86.59 15 A GLU 54 -107.20 65.80 15 A HIS 55 -159.79 -62.20 15 B PRO 226 -74.96 -82.57 15 B GLU 254 -107.05 52.72 15 B HIS 255 -174.63 146.73 15 B CYS 258 -158.91 -49.10 16 A PRO 26 -75.06 -90.63 16 A HIS 55 -74.97 -82.09 16 A CYS 58 -175.42 115.53 16 B PRO 226 -75.05 -85.90 16 B HIS 255 61.08 154.78 17 A PRO 26 -74.97 -87.77 17 A GLU 52 41.97 71.74 17 A HIS 55 -153.67 -75.59 17 B PRO 226 -75.01 -81.08 17 B GLU 254 -111.60 51.52 17 B CYS 258 -140.16 -62.59 18 A PRO 26 -74.93 -89.91 18 A HIS 55 86.17 -72.33 18 A CYS 58 179.58 150.98 18 B PRO 226 -74.97 -82.15 18 B GLU 252 -103.86 59.68 18 B GLU 254 40.13 -161.81 18 B HIS 255 169.80 48.86 19 A PRO 26 -75.13 -86.16 19 A HIS 55 -176.31 -64.92 19 A CYS 58 -172.39 116.28 19 B PRO 226 -74.96 -82.97 Solution NMR Structure of Protein yoaG from Escherichia coli. Ontario Centre for Structural Proteomics Target EC0264_1_60; Northeast Structural Genomics Consortium Target ET94. 1 N N 1 N N A PRO 26 A PRO 26 HELX_P A LEU 30 A LEU 30 5 1 5 A VAL 31 A VAL 31 HELX_P A TYR 49 A TYR 49 1 2 19 B MET 227 B MET 27 HELX_P B LEU 230 B LEU 30 5 3 4 B VAL 231 B VAL 31 HELX_P B TYR 249 B TYR 49 1 4 19 Structural genomics, unknown function Alpha/Beta protein, homodimer, OCSP, NESG, PROTEIN STRUCTURE INITIATIVE, structural genomics, PSI, Northeast Structural Genomics Consortium, unknown function YOAG_ECOLI UNP 1 1 P64496 MGKATYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVNTVRSYDTENEHDVCGW 1 60 1NEI 1 60 P64496 A 1 1 60 1 60 1NEI 201 260 P64496 B 1 1 60 4 anti-parallel anti-parallel anti-parallel A SER 18 A SER 18 A GLU 22 A GLU 22 A TYR 6 A TYR 6 A ASN 12 A ASN 12 B TYR 206 B TYR 6 B ASN 212 B ASN 12 B SER 218 B SER 18 B THR 223 B THR 23