0.014497
0.000000
0.000000
0.000000
0.013987
0.000000
0.000000
0.000000
0.010936
0.000000
0.000000
0.000000
Wouters, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
68.982
71.493
91.441
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C4 H13 N O7 P2
249.096
2-DIMETHYLAMINO-ETHYL-DIPHOSPHATE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
Mn 2
54.938
MANGANESE (II) ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
O
N
90
N
O
N
91
N
P
N
92
N
O
N
93
N
O
N
94
N
O
N
95
R
P
N
96
N
O
N
97
N
C
N
98
N
C
N
99
N
N
N
100
N
C
N
101
N
C
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
N
N
116
S
C
N
117
N
C
N
118
N
O
N
119
N
C
N
120
N
C
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
O
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
N
N
136
S
C
N
137
N
C
N
138
N
O
N
139
N
C
N
140
N
C
N
141
N
C
N
142
N
O
N
143
N
O
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
N
N
155
N
C
N
156
N
C
N
157
N
O
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
N
N
165
S
C
N
166
N
C
N
167
N
O
N
168
N
C
Y
169
N
C
Y
170
N
N
Y
171
N
C
Y
172
N
C
Y
173
N
N
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
O
N
186
N
H
N
187
N
H
N
188
N
N
N
189
S
C
N
190
N
C
N
191
N
O
N
192
S
C
N
193
N
C
N
194
N
C
N
195
N
C
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
N
N
211
S
C
N
212
N
C
N
213
N
O
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
C
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
N
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
N
N
258
S
C
N
259
N
C
N
260
N
O
N
261
N
C
N
262
N
C
N
263
N
S
N
264
N
C
N
265
N
O
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
MG
N
278
N
MN
N
279
N
N
N
280
S
C
N
281
N
C
N
282
N
O
N
283
N
C
Y
284
N
C
Y
285
N
C
Y
286
N
C
Y
287
N
C
Y
288
N
C
Y
289
N
C
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
N
N
303
S
C
N
304
N
C
N
305
N
O
N
306
N
C
N
307
N
C
N
308
N
C
N
309
N
O
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
N
N
320
S
C
N
321
N
C
N
322
N
O
N
323
N
C
N
324
N
O
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
R
C
N
338
N
O
N
339
N
C
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
N
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
N
388
N
O
N
389
N
O
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
N
N
402
S
C
N
403
N
C
N
404
N
O
N
405
N
C
N
406
N
C
N
407
N
C
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
doub
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
Y
166
N
sing
Y
167
N
doub
Y
168
N
doub
N
169
N
sing
Y
170
N
sing
N
171
N
sing
Y
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
doub
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
doub
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
Y
274
N
doub
Y
275
N
sing
Y
276
N
sing
N
277
N
sing
Y
278
N
doub
N
279
N
sing
Y
280
N
doub
N
281
N
sing
Y
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
doub
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
Y
343
N
doub
Y
344
N
sing
Y
345
N
sing
N
346
N
sing
Y
347
N
doub
Y
348
N
sing
Y
349
N
sing
N
350
N
sing
Y
351
N
sing
Y
352
N
doub
N
353
N
sing
Y
354
N
doub
N
355
N
sing
Y
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
doub
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
Y
371
N
doub
Y
372
N
sing
Y
373
N
sing
N
374
N
sing
Y
375
N
doub
N
376
N
sing
Y
377
N
doub
N
378
N
sing
Y
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
278
11903
11908
10.1074/jbc.M212823200
12540835
Catalytic Mechanism of Escherichia coli Isopentenyl Diphosphate Isomerase Involves
Cys-67, Glu-116, and Tyr-104 as Suggested by Crystal Structures of Complexes with
Transition State Analogues and Irreversible Inhibitors
2003
10.2210/pdb1nfs/pdb
pdb_00001nfs
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
100
1
MIRRORS
IMAGE PLATE
MARRESEARCH
graphite
SINGLE WAVELENGTH
M
x-ray
1
1.54179
1.0
1.54179
1.54179
ROTATING ANODE
ENRAF-NONIUS
20644.391
ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE
5.3.3.2
2
man
polymer
54.938
MANGANESE (II) ION
2
syn
non-polymer
24.305
MAGNESIUM ION
2
syn
non-polymer
249.096
2-DIMETHYLAMINO-ETHYL-DIPHOSPHATE
2
syn
non-polymer
18.015
water
117
nat
water
DIMETHYLALLYL DIPHOSPHATE ISOMERASE, IPP ISOMERASE, ISOPENTENYL PYROPHOSPHATE ISOMERASE
no
no
MQTEHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAV
IRRCRYELGVEITPPESIYPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLHGIDATPWAFSP
WMVMQATNREARKRLSAFTQLKL
MQTEHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAV
IRRCRYELGVEITPPESIYPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLHGIDATPWAFSP
WMVMQATNREARKRLSAFTQLKL
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
562
Escherichia coli
562
Escherichia coli
1
2.43
54.28
VAPOR DIFFUSION, HANGING DROP
5.5
PEG 2000, MANGANESE CHLORIDE, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 290K
290
software
diffrn_source
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Data collection
Database references
Derived calculations
Refinement description
1
0
2003-06-24
1
1
2008-04-29
1
2
2011-07-13
1
3
2017-10-11
1
4
2018-04-04
1
5
2023-08-16
_diffrn_source.type
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
STRUCTURE AND MECHANISM OF ACTION OF ISOPENTENYLPYROPHOSPHATE-DIMETHYLALLYLPYROPHOSPHATE ISOMERASE: COMPLEX WITH EIPP
RCSB
Y
RCSB
2002-12-16
REL
REL
MN
MANGANESE (II) ION
MG
MAGNESIUM ION
DED
2-DIMETHYLAMINO-ETHYL-DIPHOSPHATE
HOH
water
1HZT
PDB ENTRY 1HZT
PDB
experimental model
MN
201
2
MN
MN
201
A
MG
401
3
MG
MG
401
A
NIP
301
4
DED
DED
301
A
MN
201
2
MN
MN
201
B
MG
401
3
MG
MG
401
B
NIP
302
4
DED
DED
302
B
HOH
501
5
HOH
HOH
501
A
HOH
502
5
HOH
HOH
502
A
HOH
503
5
HOH
HOH
503
A
HOH
504
5
HOH
HOH
504
A
HOH
505
5
HOH
HOH
505
A
HOH
506
5
HOH
HOH
506
A
HOH
507
5
HOH
HOH
507
A
HOH
508
5
HOH
HOH
508
A
HOH
509
5
HOH
HOH
509
A
HOH
510
5
HOH
HOH
510
A
HOH
511
5
HOH
HOH
511
A
HOH
512
5
HOH
HOH
512
A
HOH
513
5
HOH
HOH
513
A
HOH
524
5
HOH
HOH
524
A
HOH
526
5
HOH
HOH
526
A
HOH
527
5
HOH
HOH
527
A
HOH
528
5
HOH
HOH
528
A
HOH
529
5
HOH
HOH
529
A
HOH
530
5
HOH
HOH
530
A
HOH
531
5
HOH
HOH
531
A
HOH
532
5
HOH
HOH
532
A
HOH
533
5
HOH
HOH
533
A
HOH
535
5
HOH
HOH
535
A
HOH
538
5
HOH
HOH
538
A
HOH
541
5
HOH
HOH
541
A
HOH
543
5
HOH
HOH
543
A
HOH
548
5
HOH
HOH
548
A
HOH
552
5
HOH
HOH
552
A
HOH
556
5
HOH
HOH
556
A
HOH
558
5
HOH
HOH
558
A
HOH
559
5
HOH
HOH
559
A
HOH
560
5
HOH
HOH
560
A
HOH
563
5
HOH
HOH
563
A
HOH
564
5
HOH
HOH
564
A
HOH
569
5
HOH
HOH
569
A
HOH
570
5
HOH
HOH
570
A
HOH
571
5
HOH
HOH
571
A
HOH
572
5
HOH
HOH
572
A
HOH
576
5
HOH
HOH
576
A
HOH
577
5
HOH
HOH
577
A
HOH
578
5
HOH
HOH
578
A
HOH
579
5
HOH
HOH
579
A
HOH
581
5
HOH
HOH
581
A
HOH
582
5
HOH
HOH
582
A
HOH
586
5
HOH
HOH
586
A
HOH
589
5
HOH
HOH
589
A
HOH
592
5
HOH
HOH
592
A
HOH
596
5
HOH
HOH
596
A
HOH
597
5
HOH
HOH
597
A
HOH
599
5
HOH
HOH
599
A
HOH
600
5
HOH
HOH
600
A
HOH
601
5
HOH
HOH
601
A
HOH
603
5
HOH
HOH
603
A
HOH
604
5
HOH
HOH
604
A
HOH
605
5
HOH
HOH
605
A
HOH
606
5
HOH
HOH
606
A
HOH
607
5
HOH
HOH
607
A
HOH
608
5
HOH
HOH
608
A
HOH
609
5
HOH
HOH
609
A
HOH
612
5
HOH
HOH
612
A
HOH
613
5
HOH
HOH
613
A
HOH
615
5
HOH
HOH
615
A
HOH
617
5
HOH
HOH
617
A
HOH
514
5
HOH
HOH
514
B
HOH
515
5
HOH
HOH
515
B
HOH
516
5
HOH
HOH
516
B
HOH
517
5
HOH
HOH
517
B
HOH
518
5
HOH
HOH
518
B
HOH
519
5
HOH
HOH
519
B
HOH
520
5
HOH
HOH
520
B
HOH
521
5
HOH
HOH
521
B
HOH
522
5
HOH
HOH
522
B
HOH
523
5
HOH
HOH
523
B
HOH
525
5
HOH
HOH
525
B
HOH
534
5
HOH
HOH
534
B
HOH
536
5
HOH
HOH
536
B
HOH
537
5
HOH
HOH
537
B
HOH
539
5
HOH
HOH
539
B
HOH
540
5
HOH
HOH
540
B
HOH
542
5
HOH
HOH
542
B
HOH
544
5
HOH
HOH
544
B
HOH
545
5
HOH
HOH
545
B
HOH
546
5
HOH
HOH
546
B
HOH
547
5
HOH
HOH
547
B
HOH
549
5
HOH
HOH
549
B
HOH
550
5
HOH
HOH
550
B
HOH
551
5
HOH
HOH
551
B
HOH
553
5
HOH
HOH
553
B
HOH
554
5
HOH
HOH
554
B
HOH
555
5
HOH
HOH
555
B
HOH
557
5
HOH
HOH
557
B
HOH
561
5
HOH
HOH
561
B
HOH
562
5
HOH
HOH
562
B
HOH
565
5
HOH
HOH
565
B
HOH
566
5
HOH
HOH
566
B
HOH
567
5
HOH
HOH
567
B
HOH
568
5
HOH
HOH
568
B
HOH
573
5
HOH
HOH
573
B
HOH
574
5
HOH
HOH
574
B
HOH
575
5
HOH
HOH
575
B
HOH
580
5
HOH
HOH
580
B
HOH
583
5
HOH
HOH
583
B
HOH
584
5
HOH
HOH
584
B
HOH
585
5
HOH
HOH
585
B
HOH
587
5
HOH
HOH
587
B
HOH
588
5
HOH
HOH
588
B
HOH
590
5
HOH
HOH
590
B
HOH
591
5
HOH
HOH
591
B
HOH
593
5
HOH
HOH
593
B
HOH
594
5
HOH
HOH
594
B
HOH
595
5
HOH
HOH
595
B
HOH
598
5
HOH
HOH
598
B
HOH
602
5
HOH
HOH
602
B
HOH
610
5
HOH
HOH
610
B
HOH
611
5
HOH
HOH
611
B
HOH
614
5
HOH
HOH
614
B
HOH
616
5
HOH
HOH
616
B
n
1
1
A
n
2
2
A
n
3
3
A
GLU
4
n
4
GLU
4
A
HIS
5
n
5
HIS
5
A
VAL
6
n
6
VAL
6
A
ILE
7
n
7
ILE
7
A
LEU
8
n
8
LEU
8
A
LEU
9
n
9
LEU
9
A
ASN
10
n
10
ASN
10
A
ALA
11
n
11
ALA
11
A
GLN
12
n
12
GLN
12
A
GLY
13
n
13
GLY
13
A
VAL
14
n
14
VAL
14
A
PRO
15
n
15
PRO
15
A
THR
16
n
16
THR
16
A
GLY
17
n
17
GLY
17
A
THR
18
n
18
THR
18
A
LEU
19
n
19
LEU
19
A
GLU
20
n
20
GLU
20
A
LYS
21
n
21
LYS
21
A
TYR
22
n
22
TYR
22
A
ALA
23
n
23
ALA
23
A
ALA
24
n
24
ALA
24
A
HIS
25
n
25
HIS
25
A
THR
26
n
26
THR
26
A
ALA
27
n
27
ALA
27
A
ASP
28
n
28
ASP
28
A
THR
29
n
29
THR
29
A
ARG
30
n
30
ARG
30
A
LEU
31
n
31
LEU
31
A
HIS
32
n
32
HIS
32
A
LEU
33
n
33
LEU
33
A
ALA
34
n
34
ALA
34
A
PHE
35
n
35
PHE
35
A
SER
36
n
36
SER
36
A
SER
37
n
37
SER
37
A
TRP
38
n
38
TRP
38
A
LEU
39
n
39
LEU
39
A
PHE
40
n
40
PHE
40
A
ASN
41
n
41
ASN
41
A
ALA
42
n
42
ALA
42
A
LYS
43
n
43
LYS
43
A
GLY
44
n
44
GLY
44
A
GLN
45
n
45
GLN
45
A
LEU
46
n
46
LEU
46
A
LEU
47
n
47
LEU
47
A
VAL
48
n
48
VAL
48
A
THR
49
n
49
THR
49
A
ARG
50
n
50
ARG
50
A
ARG
51
n
51
ARG
51
A
ALA
52
n
52
ALA
52
A
LEU
53
n
53
LEU
53
A
SER
54
n
54
SER
54
A
LYS
55
n
55
LYS
55
A
LYS
56
n
56
LYS
56
A
ALA
57
n
57
ALA
57
A
TRP
58
n
58
TRP
58
A
PRO
59
n
59
PRO
59
A
GLY
60
n
60
GLY
60
A
VAL
61
n
61
VAL
61
A
TRP
62
n
62
TRP
62
A
THR
63
n
63
THR
63
A
ASN
64
n
64
ASN
64
A
SER
65
n
65
SER
65
A
VAL
66
n
66
VAL
66
A
CYS
67
n
67
CYS
67
A
GLY
68
n
68
GLY
68
A
HIS
69
n
69
HIS
69
A
PRO
70
n
70
PRO
70
A
GLN
71
n
71
GLN
71
A
LEU
72
n
72
LEU
72
A
GLY
73
n
73
GLY
73
A
GLU
74
n
74
GLU
74
A
SER
75
n
75
SER
75
A
ASN
76
n
76
ASN
76
A
GLU
77
n
77
GLU
77
A
ASP
78
n
78
ASP
78
A
ALA
79
n
79
ALA
79
A
VAL
80
n
80
VAL
80
A
ILE
81
n
81
ILE
81
A
ARG
82
n
82
ARG
82
A
ARG
83
n
83
ARG
83
A
CYS
84
n
84
CYS
84
A
ARG
85
n
85
ARG
85
A
TYR
86
n
86
TYR
86
A
GLU
87
n
87
GLU
87
A
LEU
88
n
88
LEU
88
A
GLY
89
n
89
GLY
89
A
VAL
90
n
90
VAL
90
A
GLU
91
n
91
GLU
91
A
ILE
92
n
92
ILE
92
A
THR
93
n
93
THR
93
A
PRO
94
n
94
PRO
94
A
PRO
95
n
95
PRO
95
A
GLU
96
n
96
GLU
96
A
SER
97
n
97
SER
97
A
ILE
98
n
98
ILE
98
A
TYR
99
n
99
TYR
99
A
PRO
100
n
100
PRO
100
A
ASP
101
n
101
ASP
101
A
PHE
102
n
102
PHE
102
A
ARG
103
n
103
ARG
103
A
TYR
104
n
104
TYR
104
A
ARG
105
n
105
ARG
105
A
ALA
106
n
106
ALA
106
A
THR
107
n
107
THR
107
A
ASP
108
n
108
ASP
108
A
PRO
109
n
109
PRO
109
A
SER
110
n
110
SER
110
A
GLY
111
n
111
GLY
111
A
ILE
112
n
112
ILE
112
A
VAL
113
n
113
VAL
113
A
GLU
114
n
114
GLU
114
A
ASN
115
n
115
ASN
115
A
GLU
116
n
116
GLU
116
A
VAL
117
n
117
VAL
117
A
CYS
118
n
118
CYS
118
A
PRO
119
n
119
PRO
119
A
VAL
120
n
120
VAL
120
A
PHE
121
n
121
PHE
121
A
ALA
122
n
122
ALA
122
A
ALA
123
n
123
ALA
123
A
ARG
124
n
124
ARG
124
A
THR
125
n
125
THR
125
A
THR
126
n
126
THR
126
A
SER
127
n
127
SER
127
A
ALA
128
n
128
ALA
128
A
LEU
129
n
129
LEU
129
A
GLN
130
n
130
GLN
130
A
ILE
131
n
131
ILE
131
A
ASN
132
n
132
ASN
132
A
ASP
133
n
133
ASP
133
A
ASP
134
n
134
ASP
134
A
GLU
135
n
135
GLU
135
A
VAL
136
n
136
VAL
136
A
MET
137
n
137
MET
137
A
ASP
138
n
138
ASP
138
A
TYR
139
n
139
TYR
139
A
GLN
140
n
140
GLN
140
A
TRP
141
n
141
TRP
141
A
CYS
142
n
142
CYS
142
A
ASP
143
n
143
ASP
143
A
LEU
144
n
144
LEU
144
A
ALA
145
n
145
ALA
145
A
ASP
146
n
146
ASP
146
A
VAL
147
n
147
VAL
147
A
LEU
148
n
148
LEU
148
A
HIS
149
n
149
HIS
149
A
GLY
150
n
150
GLY
150
A
ILE
151
n
151
ILE
151
A
ASP
152
n
152
ASP
152
A
ALA
153
n
153
ALA
153
A
THR
154
n
154
THR
154
A
PRO
155
n
155
PRO
155
A
TRP
156
n
156
TRP
156
A
ALA
157
n
157
ALA
157
A
PHE
158
n
158
PHE
158
A
SER
159
n
159
SER
159
A
PRO
160
n
160
PRO
160
A
TRP
161
n
161
TRP
161
A
MET
162
n
162
MET
162
A
VAL
163
n
163
VAL
163
A
MET
164
n
164
MET
164
A
GLN
165
n
165
GLN
165
A
ALA
166
n
166
ALA
166
A
THR
167
n
167
THR
167
A
ASN
168
n
168
ASN
168
A
ARG
169
n
169
ARG
169
A
GLU
170
n
170
GLU
170
A
ALA
171
n
171
ALA
171
A
ARG
172
n
172
ARG
172
A
LYS
173
n
173
LYS
173
A
ARG
174
n
174
ARG
174
A
LEU
175
n
175
LEU
175
A
SER
176
n
176
SER
176
A
ALA
177
n
177
ALA
177
A
PHE
178
n
178
PHE
178
A
THR
179
n
179
THR
179
A
n
180
180
A
n
181
181
A
n
182
182
A
n
183
183
A
n
1
1
B
n
2
2
B
n
3
3
B
GLU
4
n
4
GLU
4
B
HIS
5
n
5
HIS
5
B
VAL
6
n
6
VAL
6
B
ILE
7
n
7
ILE
7
B
LEU
8
n
8
LEU
8
B
LEU
9
n
9
LEU
9
B
ASN
10
n
10
ASN
10
B
ALA
11
n
11
ALA
11
B
GLN
12
n
12
GLN
12
B
GLY
13
n
13
GLY
13
B
VAL
14
n
14
VAL
14
B
PRO
15
n
15
PRO
15
B
THR
16
n
16
THR
16
B
GLY
17
n
17
GLY
17
B
THR
18
n
18
THR
18
B
LEU
19
n
19
LEU
19
B
GLU
20
n
20
GLU
20
B
LYS
21
n
21
LYS
21
B
TYR
22
n
22
TYR
22
B
ALA
23
n
23
ALA
23
B
ALA
24
n
24
ALA
24
B
HIS
25
n
25
HIS
25
B
THR
26
n
26
THR
26
B
ALA
27
n
27
ALA
27
B
ASP
28
n
28
ASP
28
B
THR
29
n
29
THR
29
B
ARG
30
n
30
ARG
30
B
LEU
31
n
31
LEU
31
B
HIS
32
n
32
HIS
32
B
LEU
33
n
33
LEU
33
B
ALA
34
n
34
ALA
34
B
PHE
35
n
35
PHE
35
B
SER
36
n
36
SER
36
B
SER
37
n
37
SER
37
B
TRP
38
n
38
TRP
38
B
LEU
39
n
39
LEU
39
B
PHE
40
n
40
PHE
40
B
ASN
41
n
41
ASN
41
B
ALA
42
n
42
ALA
42
B
LYS
43
n
43
LYS
43
B
GLY
44
n
44
GLY
44
B
GLN
45
n
45
GLN
45
B
LEU
46
n
46
LEU
46
B
LEU
47
n
47
LEU
47
B
VAL
48
n
48
VAL
48
B
THR
49
n
49
THR
49
B
ARG
50
n
50
ARG
50
B
ARG
51
n
51
ARG
51
B
ALA
52
n
52
ALA
52
B
LEU
53
n
53
LEU
53
B
SER
54
n
54
SER
54
B
LYS
55
n
55
LYS
55
B
LYS
56
n
56
LYS
56
B
ALA
57
n
57
ALA
57
B
TRP
58
n
58
TRP
58
B
PRO
59
n
59
PRO
59
B
GLY
60
n
60
GLY
60
B
VAL
61
n
61
VAL
61
B
TRP
62
n
62
TRP
62
B
THR
63
n
63
THR
63
B
ASN
64
n
64
ASN
64
B
SER
65
n
65
SER
65
B
VAL
66
n
66
VAL
66
B
CYS
67
n
67
CYS
67
B
GLY
68
n
68
GLY
68
B
HIS
69
n
69
HIS
69
B
PRO
70
n
70
PRO
70
B
GLN
71
n
71
GLN
71
B
LEU
72
n
72
LEU
72
B
GLY
73
n
73
GLY
73
B
GLU
74
n
74
GLU
74
B
SER
75
n
75
SER
75
B
ASN
76
n
76
ASN
76
B
GLU
77
n
77
GLU
77
B
ASP
78
n
78
ASP
78
B
ALA
79
n
79
ALA
79
B
VAL
80
n
80
VAL
80
B
ILE
81
n
81
ILE
81
B
ARG
82
n
82
ARG
82
B
ARG
83
n
83
ARG
83
B
CYS
84
n
84
CYS
84
B
ARG
85
n
85
ARG
85
B
TYR
86
n
86
TYR
86
B
GLU
87
n
87
GLU
87
B
LEU
88
n
88
LEU
88
B
GLY
89
n
89
GLY
89
B
VAL
90
n
90
VAL
90
B
GLU
91
n
91
GLU
91
B
ILE
92
n
92
ILE
92
B
THR
93
n
93
THR
93
B
PRO
94
n
94
PRO
94
B
PRO
95
n
95
PRO
95
B
GLU
96
n
96
GLU
96
B
SER
97
n
97
SER
97
B
ILE
98
n
98
ILE
98
B
TYR
99
n
99
TYR
99
B
PRO
100
n
100
PRO
100
B
ASP
101
n
101
ASP
101
B
PHE
102
n
102
PHE
102
B
ARG
103
n
103
ARG
103
B
TYR
104
n
104
TYR
104
B
ARG
105
n
105
ARG
105
B
ALA
106
n
106
ALA
106
B
THR
107
n
107
THR
107
B
ASP
108
n
108
ASP
108
B
PRO
109
n
109
PRO
109
B
SER
110
n
110
SER
110
B
GLY
111
n
111
GLY
111
B
ILE
112
n
112
ILE
112
B
VAL
113
n
113
VAL
113
B
GLU
114
n
114
GLU
114
B
ASN
115
n
115
ASN
115
B
GLU
116
n
116
GLU
116
B
VAL
117
n
117
VAL
117
B
CYS
118
n
118
CYS
118
B
PRO
119
n
119
PRO
119
B
VAL
120
n
120
VAL
120
B
PHE
121
n
121
PHE
121
B
ALA
122
n
122
ALA
122
B
ALA
123
n
123
ALA
123
B
ARG
124
n
124
ARG
124
B
THR
125
n
125
THR
125
B
THR
126
n
126
THR
126
B
SER
127
n
127
SER
127
B
ALA
128
n
128
ALA
128
B
LEU
129
n
129
LEU
129
B
GLN
130
n
130
GLN
130
B
ILE
131
n
131
ILE
131
B
ASN
132
n
132
ASN
132
B
ASP
133
n
133
ASP
133
B
ASP
134
n
134
ASP
134
B
GLU
135
n
135
GLU
135
B
VAL
136
n
136
VAL
136
B
MET
137
n
137
MET
137
B
ASP
138
n
138
ASP
138
B
TYR
139
n
139
TYR
139
B
GLN
140
n
140
GLN
140
B
TRP
141
n
141
TRP
141
B
CYS
142
n
142
CYS
142
B
ASP
143
n
143
ASP
143
B
LEU
144
n
144
LEU
144
B
ALA
145
n
145
ALA
145
B
ASP
146
n
146
ASP
146
B
VAL
147
n
147
VAL
147
B
LEU
148
n
148
LEU
148
B
HIS
149
n
149
HIS
149
B
GLY
150
n
150
GLY
150
B
ILE
151
n
151
ILE
151
B
ASP
152
n
152
ASP
152
B
ALA
153
n
153
ALA
153
B
THR
154
n
154
THR
154
B
PRO
155
n
155
PRO
155
B
TRP
156
n
156
TRP
156
B
ALA
157
n
157
ALA
157
B
PHE
158
n
158
PHE
158
B
SER
159
n
159
SER
159
B
PRO
160
n
160
PRO
160
B
TRP
161
n
161
TRP
161
B
MET
162
n
162
MET
162
B
VAL
163
n
163
VAL
163
B
MET
164
n
164
MET
164
B
GLN
165
n
165
GLN
165
B
ALA
166
n
166
ALA
166
B
THR
167
n
167
THR
167
B
ASN
168
n
168
ASN
168
B
ARG
169
n
169
ARG
169
B
GLU
170
n
170
GLU
170
B
ALA
171
n
171
ALA
171
B
ARG
172
n
172
ARG
172
B
LYS
173
n
173
LYS
173
B
ARG
174
n
174
ARG
174
B
LEU
175
n
175
LEU
175
B
SER
176
n
176
SER
176
B
ALA
177
n
177
ALA
177
B
PHE
178
n
178
PHE
178
B
THR
179
n
179
THR
179
B
GLN
180
n
180
GLN
180
B
LEU
181
n
181
LEU
181
B
LYS
182
n
182
LYS
182
B
LEU
183
n
183
LEU
183
B
0.2103
0.2224
0.2187
0.262
2600
3098
10.0
0.2764
23302
author_and_software_defined_assembly
PISA
2
dimeric
2970
-34
15190
A
HIS
25
A
NE2
HIS
25
1_555
A
MN
201
C
MN
MN
1_555
A
HIS
32
A
NE2
HIS
32
1_555
85.7
A
HIS
25
A
NE2
HIS
25
1_555
A
MN
201
C
MN
MN
1_555
A
HIS
69
A
NE2
HIS
69
1_555
91.5
A
HIS
32
A
NE2
HIS
32
1_555
A
MN
201
C
MN
MN
1_555
A
HIS
69
A
NE2
HIS
69
1_555
107.4
A
HIS
25
A
NE2
HIS
25
1_555
A
MN
201
C
MN
MN
1_555
A
GLU
114
A
OE2
GLU
114
1_555
91.4
A
HIS
32
A
NE2
HIS
32
1_555
A
MN
201
C
MN
MN
1_555
A
GLU
114
A
OE2
GLU
114
1_555
93.7
A
HIS
69
A
NE2
HIS
69
1_555
A
MN
201
C
MN
MN
1_555
A
GLU
114
A
OE2
GLU
114
1_555
158.8
A
HIS
25
A
NE2
HIS
25
1_555
A
MN
201
C
MN
MN
1_555
A
GLU
114
A
OE1
GLU
114
1_555
87.8
A
HIS
32
A
NE2
HIS
32
1_555
A
MN
201
C
MN
MN
1_555
A
GLU
114
A
OE1
GLU
114
1_555
150.8
A
HIS
69
A
NE2
HIS
69
1_555
A
MN
201
C
MN
MN
1_555
A
GLU
114
A
OE1
GLU
114
1_555
101.1
A
GLU
114
A
OE2
GLU
114
1_555
A
MN
201
C
MN
MN
1_555
A
GLU
114
A
OE1
GLU
114
1_555
58.0
A
HIS
25
A
NE2
HIS
25
1_555
A
MN
201
C
MN
MN
1_555
A
GLU
116
A
OE2
GLU
116
1_555
167.2
A
HIS
32
A
NE2
HIS
32
1_555
A
MN
201
C
MN
MN
1_555
A
GLU
116
A
OE2
GLU
116
1_555
105.6
A
HIS
69
A
NE2
HIS
69
1_555
A
MN
201
C
MN
MN
1_555
A
GLU
116
A
OE2
GLU
116
1_555
90.8
A
GLU
114
A
OE2
GLU
114
1_555
A
MN
201
C
MN
MN
1_555
A
GLU
116
A
OE2
GLU
116
1_555
82.1
A
GLU
114
A
OE1
GLU
114
1_555
A
MN
201
C
MN
MN
1_555
A
GLU
116
A
OE2
GLU
116
1_555
79.4
A
CYS
67
A
O
CYS
67
1_555
A
MG
401
D
MG
MG
1_555
A
GLU
87
A
OE2
GLU
87
1_555
102.8
A
CYS
67
A
O
CYS
67
1_555
A
MG
401
D
MG
MG
1_555
A
GLU
87
A
OE1
GLU
87
1_555
107.9
A
GLU
87
A
OE2
GLU
87
1_555
A
MG
401
D
MG
MG
1_555
A
GLU
87
A
OE1
GLU
87
1_555
44.9
A
CYS
67
A
O
CYS
67
1_555
A
MG
401
D
MG
MG
1_555
A
DED
301
E
O7
DED
1_555
95.4
A
GLU
87
A
OE2
GLU
87
1_555
A
MG
401
D
MG
MG
1_555
A
DED
301
E
O7
DED
1_555
145.6
A
GLU
87
A
OE1
GLU
87
1_555
A
MG
401
D
MG
MG
1_555
A
DED
301
E
O7
DED
1_555
151.3
A
CYS
67
A
O
CYS
67
1_555
A
MG
401
D
MG
MG
1_555
A
DED
301
E
O2
DED
1_555
91.8
A
GLU
87
A
OE2
GLU
87
1_555
A
MG
401
D
MG
MG
1_555
A
DED
301
E
O2
DED
1_555
89.2
A
GLU
87
A
OE1
GLU
87
1_555
A
MG
401
D
MG
MG
1_555
A
DED
301
E
O2
DED
1_555
132.4
A
DED
301
E
O7
DED
1_555
A
MG
401
D
MG
MG
1_555
A
DED
301
E
O2
DED
1_555
61.0
A
CYS
67
A
O
CYS
67
1_555
A
MG
401
D
MG
MG
1_555
A
HOH
508
I
O
HOH
1_555
93.3
A
GLU
87
A
OE2
GLU
87
1_555
A
MG
401
D
MG
MG
1_555
A
HOH
508
I
O
HOH
1_555
101.7
A
GLU
87
A
OE1
GLU
87
1_555
A
MG
401
D
MG
MG
1_555
A
HOH
508
I
O
HOH
1_555
57.0
A
DED
301
E
O7
DED
1_555
A
MG
401
D
MG
MG
1_555
A
HOH
508
I
O
HOH
1_555
106.2
A
DED
301
E
O2
DED
1_555
A
MG
401
D
MG
MG
1_555
A
HOH
508
I
O
HOH
1_555
166.7
A
CYS
67
A
O
CYS
67
1_555
A
MG
401
D
MG
MG
1_555
A
HOH
509
I
O
HOH
1_555
175.8
A
GLU
87
A
OE2
GLU
87
1_555
A
MG
401
D
MG
MG
1_555
A
HOH
509
I
O
HOH
1_555
81.3
A
GLU
87
A
OE1
GLU
87
1_555
A
MG
401
D
MG
MG
1_555
A
HOH
509
I
O
HOH
1_555
75.6
A
DED
301
E
O7
DED
1_555
A
MG
401
D
MG
MG
1_555
A
HOH
509
I
O
HOH
1_555
80.6
A
DED
301
E
O2
DED
1_555
A
MG
401
D
MG
MG
1_555
A
HOH
509
I
O
HOH
1_555
87.4
A
HOH
508
I
O
HOH
1_555
A
MG
401
D
MG
MG
1_555
A
HOH
509
I
O
HOH
1_555
86.7
B
HIS
25
B
NE2
HIS
25
1_555
B
MN
201
F
MN
MN
1_555
B
HIS
32
B
NE2
HIS
32
1_555
89.9
B
HIS
25
B
NE2
HIS
25
1_555
B
MN
201
F
MN
MN
1_555
B
HIS
69
B
NE2
HIS
69
1_555
95.1
B
HIS
32
B
NE2
HIS
32
1_555
B
MN
201
F
MN
MN
1_555
B
HIS
69
B
NE2
HIS
69
1_555
113.1
B
HIS
25
B
NE2
HIS
25
1_555
B
MN
201
F
MN
MN
1_555
B
GLU
114
B
OE2
GLU
114
1_555
92.4
B
HIS
32
B
NE2
HIS
32
1_555
B
MN
201
F
MN
MN
1_555
B
GLU
114
B
OE2
GLU
114
1_555
92.2
B
HIS
69
B
NE2
HIS
69
1_555
B
MN
201
F
MN
MN
1_555
B
GLU
114
B
OE2
GLU
114
1_555
153.5
B
HIS
25
B
NE2
HIS
25
1_555
B
MN
201
F
MN
MN
1_555
B
GLU
114
B
OE1
GLU
114
1_555
88.1
B
HIS
32
B
NE2
HIS
32
1_555
B
MN
201
F
MN
MN
1_555
B
GLU
114
B
OE1
GLU
114
1_555
147.0
B
HIS
69
B
NE2
HIS
69
1_555
B
MN
201
F
MN
MN
1_555
B
GLU
114
B
OE1
GLU
114
1_555
99.8
B
GLU
114
B
OE2
GLU
114
1_555
B
MN
201
F
MN
MN
1_555
B
GLU
114
B
OE1
GLU
114
1_555
55.0
B
HIS
25
B
NE2
HIS
25
1_555
B
MN
201
F
MN
MN
1_555
B
GLU
116
B
OE2
GLU
116
1_555
165.0
B
HIS
32
B
NE2
HIS
32
1_555
B
MN
201
F
MN
MN
1_555
B
GLU
116
B
OE2
GLU
116
1_555
103.2
B
HIS
69
B
NE2
HIS
69
1_555
B
MN
201
F
MN
MN
1_555
B
GLU
116
B
OE2
GLU
116
1_555
86.4
B
GLU
114
B
OE2
GLU
114
1_555
B
MN
201
F
MN
MN
1_555
B
GLU
116
B
OE2
GLU
116
1_555
80.1
B
GLU
114
B
OE1
GLU
114
1_555
B
MN
201
F
MN
MN
1_555
B
GLU
116
B
OE2
GLU
116
1_555
77.0
B
CYS
67
B
O
CYS
67
1_555
B
MG
401
G
MG
MG
1_555
B
GLU
87
B
OE2
GLU
87
1_555
99.6
B
CYS
67
B
O
CYS
67
1_555
B
MG
401
G
MG
MG
1_555
B
GLU
87
B
OE1
GLU
87
1_555
95.3
B
GLU
87
B
OE2
GLU
87
1_555
B
MG
401
G
MG
MG
1_555
B
GLU
87
B
OE1
GLU
87
1_555
44.2
B
CYS
67
B
O
CYS
67
1_555
B
MG
401
G
MG
MG
1_555
B
DED
302
H
O7
DED
1_555
80.2
B
GLU
87
B
OE2
GLU
87
1_555
B
MG
401
G
MG
MG
1_555
B
DED
302
H
O7
DED
1_555
144.9
B
GLU
87
B
OE1
GLU
87
1_555
B
MG
401
G
MG
MG
1_555
B
DED
302
H
O7
DED
1_555
170.2
B
CYS
67
B
O
CYS
67
1_555
B
MG
401
G
MG
MG
1_555
B
DED
302
H
O2
DED
1_555
79.8
B
GLU
87
B
OE2
GLU
87
1_555
B
MG
401
G
MG
MG
1_555
B
DED
302
H
O2
DED
1_555
92.9
B
GLU
87
B
OE1
GLU
87
1_555
B
MG
401
G
MG
MG
1_555
B
DED
302
H
O2
DED
1_555
135.9
B
DED
302
H
O7
DED
1_555
B
MG
401
G
MG
MG
1_555
B
DED
302
H
O2
DED
1_555
52.2
B
CYS
67
B
O
CYS
67
1_555
B
MG
401
G
MG
MG
1_555
B
HOH
522
J
O
HOH
1_555
84.4
B
GLU
87
B
OE2
GLU
87
1_555
B
MG
401
G
MG
MG
1_555
B
HOH
522
J
O
HOH
1_555
101.0
B
GLU
87
B
OE1
GLU
87
1_555
B
MG
401
G
MG
MG
1_555
B
HOH
522
J
O
HOH
1_555
56.8
B
DED
302
H
O7
DED
1_555
B
MG
401
G
MG
MG
1_555
B
HOH
522
J
O
HOH
1_555
113.8
B
DED
302
H
O2
DED
1_555
B
MG
401
G
MG
MG
1_555
B
HOH
522
J
O
HOH
1_555
160.4
B
CYS
67
B
O
CYS
67
1_555
B
MG
401
G
MG
MG
1_555
B
HOH
523
J
O
HOH
1_555
169.7
B
GLU
87
B
OE2
GLU
87
1_555
B
MG
401
G
MG
MG
1_555
B
HOH
523
J
O
HOH
1_555
74.2
B
GLU
87
B
OE1
GLU
87
1_555
B
MG
401
G
MG
MG
1_555
B
HOH
523
J
O
HOH
1_555
85.9
B
DED
302
H
O7
DED
1_555
B
MG
401
G
MG
MG
1_555
B
HOH
523
J
O
HOH
1_555
100.1
B
DED
302
H
O2
DED
1_555
B
MG
401
G
MG
MG
1_555
B
HOH
523
J
O
HOH
1_555
92.2
B
HOH
522
J
O
HOH
1_555
B
MG
401
G
MG
MG
1_555
B
HOH
523
J
O
HOH
1_555
104.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
8
A
N
LEU
8
A
O
GLY
17
A
O
GLY
17
A
N
HIS
32
A
N
HIS
32
A
O
VAL
117
A
O
VAL
117
A
O
GLU
114
A
O
GLU
114
A
N
ALA
106
A
N
ALA
106
A
O
VAL
66
A
O
VAL
66
A
N
SER
37
A
N
SER
37
A
N
SER
36
A
N
SER
36
A
O
PHE
121
A
O
PHE
121
A
O
ALA
122
A
O
ALA
122
A
N
GLU
96
A
N
GLU
96
A
O
THR
63
A
O
THR
63
A
N
THR
49
A
N
THR
49
A
N
LEU
46
A
N
LEU
46
A
O
CYS
142
A
O
CYS
142
B
N
VAL
6
B
N
VAL
6
B
O
LEU
19
B
O
LEU
19
B
N
HIS
32
B
N
HIS
32
B
O
VAL
117
B
O
VAL
117
B
O
GLU
114
B
O
GLU
114
B
N
ALA
106
B
N
ALA
106
B
O
VAL
66
B
O
VAL
66
B
N
SER
37
B
N
SER
37
B
N
SER
36
B
N
SER
36
B
O
PHE
121
B
O
PHE
121
B
O
ALA
122
B
O
ALA
122
B
N
GLU
96
B
N
GLU
96
B
O
THR
63
B
O
THR
63
B
N
THR
49
B
N
THR
49
B
N
ARG
50
B
N
ARG
50
B
O
MET
137
B
O
MET
137
1
A
MET
1
A
MET
1
1
Y
1
A
GLN
2
A
GLN
2
1
Y
1
A
THR
3
A
THR
3
1
Y
1
A
GLN
180
A
GLN
180
1
Y
1
A
LEU
181
A
LEU
181
1
Y
1
A
LYS
182
A
LYS
182
1
Y
1
A
LEU
183
A
LEU
183
1
Y
1
B
MET
1
B
MET
1
1
Y
1
B
GLN
2
B
GLN
2
1
Y
1
B
THR
3
B
THR
3
1
Y
1
6.93
0.90
118.30
125.23
A
A
A
CB
CG
OD1
ASP
ASP
ASP
108
108
108
N
1
33.02
2.10
120.10
153.12
A
A
A
CA
C
O
THR
THR
THR
179
179
179
N
1
A
A
C
O
THR
THR
179
179
3.582
0.019
1.229
4.811
N
1
B
B
C
O
LEU
LEU
183
183
0.115
0.019
1.229
1.344
N
1
B
B
C
OXT
LEU
LEU
183
183
0.276
0.019
1.229
1.505
N
1
A
TYR
99
-156.07
79.60
1
B
ASN
10
-100.55
-168.01
1
B
TYR
99
-156.02
71.04
0.2602
0.2103
0.2224
0.2187
1.96
10.00
11935
3098
27788
23302
15429
0.2764
84.6
RANDOM
1
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1HZT
ENGH AND HUBER
0
0.00
2983.00
1.96
10.00
117
2970
32
0
2821
0.005
0.019
0.043
0.0267
0.029
0.033
0.008
0.000
0.054
0.000
1.96
10
1NFS
27788
23302
2
4
0.042
1
9.2
94.8
0.244
1.97
2.08
6.3
94.8
data collection
MAR345
model building
SHELX
refinement
SHELXL-97
phasing
SHELX
STRUCTURE AND MECHANISM OF ACTION OF ISOPENTENYLPYROPHOSPHATE-DIMETHYLALLYLPYROPHOSPHATE ISOMERASE: COMPLEX WITH NIPP
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
Two molecules in the asymertic unit
form the biological assembly
A
LYS
21
A
LYS
21
HELX_P
A
HIS
25
A
HIS
25
1
1
5
A
SER
75
A
SER
75
HELX_P
A
GLY
89
A
GLY
89
1
2
15
A
ASP
143
A
ASP
143
HELX_P
A
THR
154
A
THR
154
1
3
12
A
PRO
155
A
PRO
155
HELX_P
A
PHE
158
A
PHE
158
5
4
4
A
SER
159
A
SER
159
HELX_P
A
ASN
168
A
ASN
168
1
5
10
A
ASN
168
A
ASN
168
HELX_P
A
SER
176
A
SER
176
1
6
9
A
ALA
177
A
ALA
177
HELX_P
A
THR
179
A
THR
179
5
7
3
B
LYS
21
B
LYS
21
HELX_P
B
HIS
25
B
HIS
25
1
8
5
B
SER
75
B
SER
75
HELX_P
B
GLY
89
B
GLY
89
1
9
15
B
ASP
143
B
ASP
143
HELX_P
B
THR
154
B
THR
154
1
10
12
B
PRO
155
B
PRO
155
HELX_P
B
PHE
158
B
PHE
158
5
11
4
B
SER
159
B
SER
159
HELX_P
B
ASN
168
B
ASN
168
1
12
10
B
ASN
168
B
ASN
168
HELX_P
B
PHE
178
B
PHE
178
1
13
11
metalc
2.087
A
HIS
25
A
NE2
HIS
25
1_555
A
MN
201
C
MN
MN
1_555
metalc
2.048
A
HIS
32
A
NE2
HIS
32
1_555
A
MN
201
C
MN
MN
1_555
metalc
2.094
A
CYS
67
A
O
CYS
67
1_555
A
MG
401
D
MG
MG
1_555
metalc
2.059
A
HIS
69
A
NE2
HIS
69
1_555
A
MN
201
C
MN
MN
1_555
metalc
2.016
A
GLU
87
A
OE2
GLU
87
1_555
A
MG
401
D
MG
MG
1_555
metalc
3.111
A
GLU
87
A
OE1
GLU
87
1_555
A
MG
401
D
MG
MG
1_555
metalc
2.074
A
GLU
114
A
OE2
GLU
114
1_555
A
MN
201
C
MN
MN
1_555
metalc
2.388
A
GLU
114
A
OE1
GLU
114
1_555
A
MN
201
C
MN
MN
1_555
metalc
1.845
A
GLU
116
A
OE2
GLU
116
1_555
A
MN
201
C
MN
MN
1_555
metalc
1.792
A
DED
301
E
O7
DED
1_555
A
MG
401
D
MG
MG
1_555
metalc
1.916
A
DED
301
E
O2
DED
1_555
A
MG
401
D
MG
MG
1_555
metalc
1.922
A
MG
401
D
MG
MG
1_555
A
HOH
508
I
O
HOH
1_555
metalc
2.059
A
MG
401
D
MG
MG
1_555
A
HOH
509
I
O
HOH
1_555
metalc
1.966
B
HIS
25
B
NE2
HIS
25
1_555
B
MN
201
F
MN
MN
1_555
metalc
1.971
B
HIS
32
B
NE2
HIS
32
1_555
B
MN
201
F
MN
MN
1_555
metalc
2.493
B
CYS
67
B
O
CYS
67
1_555
B
MG
401
G
MG
MG
1_555
metalc
2.021
B
HIS
69
B
NE2
HIS
69
1_555
B
MN
201
F
MN
MN
1_555
metalc
1.912
B
GLU
87
B
OE2
GLU
87
1_555
B
MG
401
G
MG
MG
1_555
metalc
3.087
B
GLU
87
B
OE1
GLU
87
1_555
B
MG
401
G
MG
MG
1_555
metalc
2.151
B
GLU
114
B
OE2
GLU
114
1_555
B
MN
201
F
MN
MN
1_555
metalc
2.489
B
GLU
114
B
OE1
GLU
114
1_555
B
MN
201
F
MN
MN
1_555
metalc
1.976
B
GLU
116
B
OE2
GLU
116
1_555
B
MN
201
F
MN
MN
1_555
metalc
1.710
B
DED
302
H
O7
DED
1_555
B
MG
401
G
MG
MG
1_555
metalc
2.334
B
DED
302
H
O2
DED
1_555
B
MG
401
G
MG
MG
1_555
metalc
2.089
B
MG
401
G
MG
MG
1_555
B
HOH
522
J
O
HOH
1_555
metalc
1.983
B
MG
401
G
MG
MG
1_555
B
HOH
523
J
O
HOH
1_555
ISOMERASE
COMPLEX, ISOMERASE
IDI_ECOLI
UNP
1
1
Q46822
MQTEHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAV
IRRCRYELGVEITPPESIYPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLHGIDATPWAFSP
WMVMQATNREARKRLSAFTQLK
1
182
1NFS
1
182
Q46822
A
1
1
182
1
182
1NFS
1
182
Q46822
B
1
1
182
1
cloning artifact
LEU
183
1NFS
A
Q46822
UNP
183
2
cloning artifact
LEU
183
1NFS
B
Q46822
UNP
183
2
3
4
3
2
3
4
3
anti-parallel
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
HIS
5
A
HIS
5
A
LEU
9
A
LEU
9
A
PRO
15
A
PRO
15
A
GLU
20
A
GLU
20
A
HIS
32
A
HIS
32
A
LEU
33
A
LEU
33
A
VAL
113
A
VAL
113
A
VAL
117
A
VAL
117
A
ARG
103
A
ARG
103
A
THR
107
A
THR
107
A
VAL
66
A
VAL
66
A
GLY
68
A
GLY
68
A
PHE
35
A
PHE
35
A
PHE
40
A
PHE
40
A
VAL
120
A
VAL
120
A
ARG
124
A
ARG
124
A
GLU
96
A
GLU
96
A
TYR
99
A
TYR
99
A
TRP
62
A
TRP
62
A
ASN
64
A
ASN
64
A
LEU
46
A
LEU
46
A
ARG
51
A
ARG
51
A
VAL
136
A
VAL
136
A
CYS
142
A
CYS
142
B
HIS
5
B
HIS
5
B
LEU
9
B
LEU
9
B
PRO
15
B
PRO
15
B
GLU
20
B
GLU
20
B
HIS
32
B
HIS
32
B
LEU
33
B
LEU
33
B
VAL
113
B
VAL
113
B
VAL
117
B
VAL
117
B
ARG
103
B
ARG
103
B
THR
107
B
THR
107
B
VAL
66
B
VAL
66
B
GLY
68
B
GLY
68
B
PHE
35
B
PHE
35
B
PHE
40
B
PHE
40
B
VAL
120
B
VAL
120
B
ARG
124
B
ARG
124
B
GLU
96
B
GLU
96
B
TYR
99
B
TYR
99
B
TRP
62
B
TRP
62
B
THR
63
B
THR
63
B
LEU
46
B
LEU
46
B
ARG
51
B
ARG
51
B
VAL
136
B
VAL
136
B
CYS
142
B
CYS
142
BINDING SITE FOR RESIDUE MN A 201
A
MN
201
Software
5
BINDING SITE FOR RESIDUE MN B 201
B
MN
201
Software
5
BINDING SITE FOR RESIDUE MG A 401
A
MG
401
Software
5
BINDING SITE FOR RESIDUE MG B 401
B
MG
401
Software
5
BINDING SITE FOR RESIDUE DED A 301
A
DED
301
Software
17
BINDING SITE FOR RESIDUE DED B 302
B
DED
302
Software
14
A
HIS
25
A
HIS
25
5
1_555
A
HIS
32
A
HIS
32
5
1_555
A
HIS
69
A
HIS
69
5
1_555
A
GLU
114
A
GLU
114
5
1_555
A
GLU
116
A
GLU
116
5
1_555
B
HIS
25
B
HIS
25
5
1_555
B
HIS
32
B
HIS
32
5
1_555
B
HIS
69
B
HIS
69
5
1_555
B
GLU
114
B
GLU
114
5
1_555
B
GLU
116
B
GLU
116
5
1_555
A
CYS
67
A
CYS
67
5
1_555
A
GLU
87
A
GLU
87
5
1_555
A
DED
301
E
DED
5
1_555
A
HOH
508
I
HOH
5
1_555
A
HOH
509
I
HOH
5
1_555
B
CYS
67
B
CYS
67
5
1_555
B
GLU
87
B
GLU
87
5
1_555
B
DED
302
H
DED
5
1_555
B
HOH
522
J
HOH
5
1_555
B
HOH
523
J
HOH
5
1_555
A
LYS
21
A
LYS
21
17
1_555
A
ARG
51
A
ARG
51
17
1_555
A
LYS
55
A
LYS
55
17
1_555
A
CYS
67
A
CYS
67
17
1_555
A
GLY
68
A
GLY
68
17
1_555
A
HIS
69
A
HIS
69
17
1_555
A
ARG
83
A
ARG
83
17
1_555
A
GLU
87
A
GLU
87
17
1_555
A
TYR
104
A
TYR
104
17
1_555
A
GLU
114
A
GLU
114
17
1_555
A
GLU
116
A
GLU
116
17
1_555
A
TRP
161
A
TRP
161
17
1_555
A
MG
401
D
MG
17
1_555
A
HOH
506
I
HOH
17
1_555
A
HOH
508
I
HOH
17
1_555
A
HOH
509
I
HOH
17
1_555
A
HOH
512
I
HOH
17
1_555
B
LYS
21
B
LYS
21
14
1_555
B
ARG
51
B
ARG
51
14
1_555
B
LYS
55
B
LYS
55
14
1_555
B
CYS
67
B
CYS
67
14
1_555
B
GLY
68
B
GLY
68
14
1_555
B
HIS
69
B
HIS
69
14
1_555
B
ARG
83
B
ARG
83
14
1_555
B
GLU
87
B
GLU
87
14
1_555
B
TYR
104
B
TYR
104
14
1_555
B
GLU
114
B
GLU
114
14
1_555
B
GLU
116
B
GLU
116
14
1_555
B
MG
401
G
MG
14
1_555
B
HOH
516
J
HOH
14
1_555
B
HOH
523
J
HOH
14
1_555
19
P 21 21 21