0.014053
0.000000
0.000000
0.000000
0.009580
0.000000
0.000000
0.000000
0.017195
0.00000
0.00000
0.00000
Zhang, R.
Joachimiak, G.
Joachimiak, A.
Midwest Center for Structural Genomics (MCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
71.158
104.383
58.158
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Structure
STRUE6
2005
0969-2126
12
1147
1156
10.1016/j.str.2004.06.001
15242591
Structures of sortase B from Staphylococcus aureus and Bacillus anthracis reveal catalytic amino acid triad in the active site.
2004
10.2210/pdb1ng5/pdb
pdb_00001ng5
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirrors
CCD
2001-11-19
SBC-2
Si 111 channel
MAD
M
x-ray
1
0.9795
1.0
0.9798
1.0
0.94656
1.0
19-ID
APS
0.9795,0.9798,0.94656
SYNCHROTRON
APS BEAMLINE 19-ID
25641.000
sortase B
2
man
polymer
18.015
water
307
nat
water
no
no
MEDKQERANYEKLQQKFQMLMSKHQAHVRPQFESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGS
IFMDFRNELKNLNHNTILYGHHVGDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDNYIRTDFEND
QDYQQFLDETKRKSVINSDVNVTVKDKIMTLSTCEDAYSETTKRIVVVAKIIKVS
MEDKQERANYEKLQQKFQMLMSKHQAHVRPQFESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGS
IFMDFRNELKNLNHNTILYGHHVGDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDNYIRTDFEND
QDYQQFLDETKRKSVINSDVNVTVKDKIMTLSTCEDAYSETTKRIVVVAKIIKVS
A,B
APC010
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Staphylococcus
Staphylococcus aureus
N315
Escherichia
Escherichia coli
sample
SA0982
158879
Staphylococcus aureus subsp. aureus
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
PLASMID
PDM 68
2
2.11
41.59
VAPOR DIFFUSION, HANGING DROP
5.6
2.5M Na2SO4, 0.1M triNa citrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
Midwest Center for Structural Genomics
MCSG
PSI, Protein Structure Initiative
software
database_2
struct_ref_seq_dif
repository
Initial release
Version format compliance
Source and taxonomy
Version format compliance
Refinement description
Database references
1
0
2003-09-23
1
1
2008-04-29
1
2
2011-07-13
1
3
2017-10-11
1
4
2022-12-21
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
Y
RCSB
Y
RCSB
2002-12-16
REL
REL
HOH
water
TIP
300
2
HOH
HOH
300
A
TIP
305
2
HOH
HOH
305
A
TIP
306
2
HOH
HOH
306
A
TIP
310
2
HOH
HOH
310
A
TIP
314
2
HOH
HOH
314
A
TIP
316
2
HOH
HOH
316
A
TIP
318
2
HOH
HOH
318
A
TIP
319
2
HOH
HOH
319
A
TIP
320
2
HOH
HOH
320
A
TIP
323
2
HOH
HOH
323
A
TIP
324
2
HOH
HOH
324
A
TIP
325
2
HOH
HOH
325
A
TIP
327
2
HOH
HOH
327
A
TIP
328
2
HOH
HOH
328
A
TIP
332
2
HOH
HOH
332
A
TIP
333
2
HOH
HOH
333
A
TIP
334
2
HOH
HOH
334
A
TIP
337
2
HOH
HOH
337
A
TIP
338
2
HOH
HOH
338
A
TIP
342
2
HOH
HOH
342
A
TIP
347
2
HOH
HOH
347
A
TIP
349
2
HOH
HOH
349
A
TIP
351
2
HOH
HOH
351
A
TIP
356
2
HOH
HOH
356
A
TIP
358
2
HOH
HOH
358
A
TIP
360
2
HOH
HOH
360
A
TIP
361
2
HOH
HOH
361
A
TIP
363
2
HOH
HOH
363
A
TIP
365
2
HOH
HOH
365
A
TIP
368
2
HOH
HOH
368
A
TIP
370
2
HOH
HOH
370
A
TIP
372
2
HOH
HOH
372
A
TIP
373
2
HOH
HOH
373
A
TIP
374
2
HOH
HOH
374
A
TIP
378
2
HOH
HOH
378
A
TIP
380
2
HOH
HOH
380
A
TIP
381
2
HOH
HOH
381
A
TIP
383
2
HOH
HOH
383
A
TIP
384
2
HOH
HOH
384
A
TIP
387
2
HOH
HOH
387
A
TIP
390
2
HOH
HOH
390
A
TIP
394
2
HOH
HOH
394
A
TIP
396
2
HOH
HOH
396
A
TIP
398
2
HOH
HOH
398
A
TIP
401
2
HOH
HOH
401
A
TIP
402
2
HOH
HOH
402
A
TIP
407
2
HOH
HOH
407
A
TIP
408
2
HOH
HOH
408
A
TIP
410
2
HOH
HOH
410
A
TIP
411
2
HOH
HOH
411
A
TIP
413
2
HOH
HOH
413
A
TIP
415
2
HOH
HOH
415
A
TIP
416
2
HOH
HOH
416
A
TIP
417
2
HOH
HOH
417
A
TIP
421
2
HOH
HOH
421
A
TIP
424
2
HOH
HOH
424
A
TIP
425
2
HOH
HOH
425
A
TIP
426
2
HOH
HOH
426
A
TIP
427
2
HOH
HOH
427
A
TIP
428
2
HOH
HOH
428
A
TIP
431
2
HOH
HOH
431
A
TIP
432
2
HOH
HOH
432
A
TIP
433
2
HOH
HOH
433
A
TIP
434
2
HOH
HOH
434
A
TIP
435
2
HOH
HOH
435
A
TIP
438
2
HOH
HOH
438
A
TIP
439
2
HOH
HOH
439
A
TIP
440
2
HOH
HOH
440
A
TIP
441
2
HOH
HOH
441
A
TIP
449
2
HOH
HOH
449
A
TIP
450
2
HOH
HOH
450
A
TIP
451
2
HOH
HOH
451
A
TIP
452
2
HOH
HOH
452
A
TIP
456
2
HOH
HOH
456
A
TIP
457
2
HOH
HOH
457
A
TIP
458
2
HOH
HOH
458
A
TIP
461
2
HOH
HOH
461
A
TIP
463
2
HOH
HOH
463
A
TIP
464
2
HOH
HOH
464
A
TIP
466
2
HOH
HOH
466
A
TIP
467
2
HOH
HOH
467
A
TIP
468
2
HOH
HOH
468
A
TIP
470
2
HOH
HOH
470
A
TIP
471
2
HOH
HOH
471
A
TIP
473
2
HOH
HOH
473
A
TIP
474
2
HOH
HOH
474
A
TIP
475
2
HOH
HOH
475
A
TIP
480
2
HOH
HOH
480
A
TIP
481
2
HOH
HOH
481
A
TIP
482
2
HOH
HOH
482
A
TIP
486
2
HOH
HOH
486
A
TIP
488
2
HOH
HOH
488
A
TIP
489
2
HOH
HOH
489
A
TIP
490
2
HOH
HOH
490
A
TIP
491
2
HOH
HOH
491
A
TIP
492
2
HOH
HOH
492
A
TIP
493
2
HOH
HOH
493
A
TIP
494
2
HOH
HOH
494
A
TIP
498
2
HOH
HOH
498
A
TIP
501
2
HOH
HOH
501
A
TIP
503
2
HOH
HOH
503
A
TIP
504
2
HOH
HOH
504
A
TIP
507
2
HOH
HOH
507
A
TIP
509
2
HOH
HOH
509
A
TIP
510
2
HOH
HOH
510
A
TIP
512
2
HOH
HOH
512
A
TIP
513
2
HOH
HOH
513
A
TIP
514
2
HOH
HOH
514
A
TIP
518
2
HOH
HOH
518
A
TIP
519
2
HOH
HOH
519
A
TIP
522
2
HOH
HOH
522
A
TIP
523
2
HOH
HOH
523
A
TIP
524
2
HOH
HOH
524
A
TIP
526
2
HOH
HOH
526
A
TIP
527
2
HOH
HOH
527
A
TIP
528
2
HOH
HOH
528
A
TIP
530
2
HOH
HOH
530
A
TIP
531
2
HOH
HOH
531
A
TIP
534
2
HOH
HOH
534
A
TIP
536
2
HOH
HOH
536
A
TIP
538
2
HOH
HOH
538
A
TIP
539
2
HOH
HOH
539
A
TIP
541
2
HOH
HOH
541
A
TIP
548
2
HOH
HOH
548
A
TIP
549
2
HOH
HOH
549
A
TIP
550
2
HOH
HOH
550
A
TIP
551
2
HOH
HOH
551
A
TIP
554
2
HOH
HOH
554
A
TIP
555
2
HOH
HOH
555
A
TIP
557
2
HOH
HOH
557
A
TIP
563
2
HOH
HOH
563
A
TIP
566
2
HOH
HOH
566
A
TIP
568
2
HOH
HOH
568
A
TIP
569
2
HOH
HOH
569
A
TIP
570
2
HOH
HOH
570
A
TIP
571
2
HOH
HOH
571
A
TIP
572
2
HOH
HOH
572
A
TIP
573
2
HOH
HOH
573
A
TIP
574
2
HOH
HOH
574
A
TIP
577
2
HOH
HOH
577
A
TIP
579
2
HOH
HOH
579
A
TIP
581
2
HOH
HOH
581
A
TIP
582
2
HOH
HOH
582
A
TIP
584
2
HOH
HOH
584
A
TIP
585
2
HOH
HOH
585
A
TIP
587
2
HOH
HOH
587
A
TIP
590
2
HOH
HOH
590
A
TIP
592
2
HOH
HOH
592
A
TIP
593
2
HOH
HOH
593
A
TIP
594
2
HOH
HOH
594
A
TIP
596
2
HOH
HOH
596
A
TIP
598
2
HOH
HOH
598
A
TIP
599
2
HOH
HOH
599
A
TIP
601
2
HOH
HOH
601
A
TIP
604
2
HOH
HOH
604
A
TIP
606
2
HOH
HOH
606
A
TIP
607
2
HOH
HOH
607
A
TIP
608
2
HOH
HOH
608
A
TIP
610
2
HOH
HOH
610
A
TIP
612
2
HOH
HOH
612
A
TIP
613
2
HOH
HOH
613
A
TIP
615
2
HOH
HOH
615
A
TIP
616
2
HOH
HOH
616
A
TIP
617
2
HOH
HOH
617
A
TIP
301
2
HOH
HOH
301
B
TIP
302
2
HOH
HOH
302
B
TIP
303
2
HOH
HOH
303
B
TIP
304
2
HOH
HOH
304
B
TIP
307
2
HOH
HOH
307
B
TIP
309
2
HOH
HOH
309
B
TIP
311
2
HOH
HOH
311
B
TIP
312
2
HOH
HOH
312
B
TIP
313
2
HOH
HOH
313
B
TIP
315
2
HOH
HOH
315
B
TIP
317
2
HOH
HOH
317
B
TIP
321
2
HOH
HOH
321
B
TIP
322
2
HOH
HOH
322
B
TIP
326
2
HOH
HOH
326
B
TIP
329
2
HOH
HOH
329
B
TIP
330
2
HOH
HOH
330
B
TIP
331
2
HOH
HOH
331
B
TIP
335
2
HOH
HOH
335
B
TIP
336
2
HOH
HOH
336
B
TIP
339
2
HOH
HOH
339
B
TIP
340
2
HOH
HOH
340
B
TIP
343
2
HOH
HOH
343
B
TIP
344
2
HOH
HOH
344
B
TIP
346
2
HOH
HOH
346
B
TIP
348
2
HOH
HOH
348
B
TIP
350
2
HOH
HOH
350
B
TIP
352
2
HOH
HOH
352
B
TIP
353
2
HOH
HOH
353
B
TIP
354
2
HOH
HOH
354
B
TIP
355
2
HOH
HOH
355
B
TIP
357
2
HOH
HOH
357
B
TIP
359
2
HOH
HOH
359
B
TIP
364
2
HOH
HOH
364
B
TIP
366
2
HOH
HOH
366
B
TIP
367
2
HOH
HOH
367
B
TIP
371
2
HOH
HOH
371
B
TIP
375
2
HOH
HOH
375
B
TIP
376
2
HOH
HOH
376
B
TIP
377
2
HOH
HOH
377
B
TIP
379
2
HOH
HOH
379
B
TIP
382
2
HOH
HOH
382
B
TIP
385
2
HOH
HOH
385
B
TIP
386
2
HOH
HOH
386
B
TIP
389
2
HOH
HOH
389
B
TIP
391
2
HOH
HOH
391
B
TIP
392
2
HOH
HOH
392
B
TIP
393
2
HOH
HOH
393
B
TIP
397
2
HOH
HOH
397
B
TIP
400
2
HOH
HOH
400
B
TIP
403
2
HOH
HOH
403
B
TIP
404
2
HOH
HOH
404
B
TIP
405
2
HOH
HOH
405
B
TIP
406
2
HOH
HOH
406
B
TIP
412
2
HOH
HOH
412
B
TIP
414
2
HOH
HOH
414
B
TIP
418
2
HOH
HOH
418
B
TIP
419
2
HOH
HOH
419
B
TIP
420
2
HOH
HOH
420
B
TIP
422
2
HOH
HOH
422
B
TIP
423
2
HOH
HOH
423
B
TIP
429
2
HOH
HOH
429
B
TIP
430
2
HOH
HOH
430
B
TIP
436
2
HOH
HOH
436
B
TIP
437
2
HOH
HOH
437
B
TIP
442
2
HOH
HOH
442
B
TIP
443
2
HOH
HOH
443
B
TIP
444
2
HOH
HOH
444
B
TIP
445
2
HOH
HOH
445
B
TIP
446
2
HOH
HOH
446
B
TIP
447
2
HOH
HOH
447
B
TIP
448
2
HOH
HOH
448
B
TIP
453
2
HOH
HOH
453
B
TIP
454
2
HOH
HOH
454
B
TIP
455
2
HOH
HOH
455
B
TIP
459
2
HOH
HOH
459
B
TIP
460
2
HOH
HOH
460
B
TIP
462
2
HOH
HOH
462
B
TIP
469
2
HOH
HOH
469
B
TIP
472
2
HOH
HOH
472
B
TIP
476
2
HOH
HOH
476
B
TIP
477
2
HOH
HOH
477
B
TIP
478
2
HOH
HOH
478
B
TIP
479
2
HOH
HOH
479
B
TIP
484
2
HOH
HOH
484
B
TIP
485
2
HOH
HOH
485
B
TIP
487
2
HOH
HOH
487
B
TIP
495
2
HOH
HOH
495
B
TIP
496
2
HOH
HOH
496
B
TIP
497
2
HOH
HOH
497
B
TIP
499
2
HOH
HOH
499
B
TIP
500
2
HOH
HOH
500
B
TIP
502
2
HOH
HOH
502
B
TIP
505
2
HOH
HOH
505
B
TIP
506
2
HOH
HOH
506
B
TIP
508
2
HOH
HOH
508
B
TIP
511
2
HOH
HOH
511
B
TIP
515
2
HOH
HOH
515
B
TIP
516
2
HOH
HOH
516
B
TIP
517
2
HOH
HOH
517
B
TIP
520
2
HOH
HOH
520
B
TIP
521
2
HOH
HOH
521
B
TIP
525
2
HOH
HOH
525
B
TIP
529
2
HOH
HOH
529
B
TIP
532
2
HOH
HOH
532
B
TIP
533
2
HOH
HOH
533
B
TIP
535
2
HOH
HOH
535
B
TIP
537
2
HOH
HOH
537
B
TIP
540
2
HOH
HOH
540
B
TIP
542
2
HOH
HOH
542
B
TIP
543
2
HOH
HOH
543
B
TIP
544
2
HOH
HOH
544
B
TIP
545
2
HOH
HOH
545
B
TIP
547
2
HOH
HOH
547
B
TIP
552
2
HOH
HOH
552
B
TIP
553
2
HOH
HOH
553
B
TIP
556
2
HOH
HOH
556
B
TIP
558
2
HOH
HOH
558
B
TIP
559
2
HOH
HOH
559
B
TIP
560
2
HOH
HOH
560
B
TIP
561
2
HOH
HOH
561
B
TIP
562
2
HOH
HOH
562
B
TIP
564
2
HOH
HOH
564
B
TIP
565
2
HOH
HOH
565
B
TIP
567
2
HOH
HOH
567
B
TIP
575
2
HOH
HOH
575
B
TIP
576
2
HOH
HOH
576
B
TIP
578
2
HOH
HOH
578
B
TIP
580
2
HOH
HOH
580
B
TIP
583
2
HOH
HOH
583
B
TIP
586
2
HOH
HOH
586
B
TIP
588
2
HOH
HOH
588
B
TIP
589
2
HOH
HOH
589
B
TIP
591
2
HOH
HOH
591
B
TIP
595
2
HOH
HOH
595
B
TIP
597
2
HOH
HOH
597
B
TIP
600
2
HOH
HOH
600
B
TIP
602
2
HOH
HOH
602
B
TIP
603
2
HOH
HOH
603
B
TIP
605
2
HOH
HOH
605
B
TIP
609
2
HOH
HOH
609
B
TIP
611
2
HOH
HOH
611
B
TIP
614
2
HOH
HOH
614
B
TIP
618
2
HOH
HOH
618
B
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
GLN
5
n
5
GLN
5
A
GLU
6
n
6
GLU
6
A
ARG
7
n
7
ARG
7
A
ALA
8
n
8
ALA
8
A
ASN
9
n
9
ASN
9
A
TYR
10
n
10
TYR
10
A
GLU
11
n
11
GLU
11
A
LYS
12
n
12
LYS
12
A
LEU
13
n
13
LEU
13
A
GLN
14
n
14
GLN
14
A
GLN
15
n
15
GLN
15
A
LYS
16
n
16
LYS
16
A
PHE
17
n
17
PHE
17
A
GLN
18
n
18
GLN
18
A
MET
19
n
19
MET
19
A
LEU
20
n
20
LEU
20
A
MET
21
n
21
MET
21
A
SER
22
n
22
SER
22
A
LYS
23
n
23
LYS
23
A
HIS
24
n
24
HIS
24
A
GLN
25
n
25
GLN
25
A
ALA
26
n
26
ALA
26
A
HIS
27
n
27
HIS
27
A
VAL
28
n
28
VAL
28
A
ARG
29
n
29
ARG
29
A
PRO
30
n
30
PRO
30
A
GLN
31
n
31
GLN
31
A
PHE
32
n
32
PHE
32
A
GLU
33
n
33
GLU
33
A
SER
34
n
34
SER
34
A
LEU
35
n
35
LEU
35
A
GLU
36
n
36
GLU
36
A
LYS
37
n
37
LYS
37
A
ILE
38
n
38
ILE
38
A
ASN
39
n
39
ASN
39
A
LYS
40
n
40
LYS
40
A
ASP
41
n
41
ASP
41
A
ILE
42
n
42
ILE
42
A
VAL
43
n
43
VAL
43
A
GLY
44
n
44
GLY
44
A
TRP
45
n
45
TRP
45
A
ILE
46
n
46
ILE
46
A
LYS
47
n
47
LYS
47
A
LEU
48
n
48
LEU
48
A
SER
49
n
49
SER
49
A
GLY
50
n
50
GLY
50
A
THR
51
n
51
THR
51
A
SER
52
n
52
SER
52
A
LEU
53
n
53
LEU
53
A
ASN
54
n
54
ASN
54
A
TYR
55
n
55
TYR
55
A
PRO
56
n
56
PRO
56
A
VAL
57
n
57
VAL
57
A
LEU
58
n
58
LEU
58
A
GLN
59
n
59
GLN
59
A
GLY
60
n
60
GLY
60
A
LYS
61
n
61
LYS
61
A
THR
62
n
62
THR
62
A
ASN
63
n
63
ASN
63
A
HIS
64
n
64
HIS
64
A
ASP
65
n
65
ASP
65
A
TYR
66
n
66
TYR
66
A
LEU
67
n
67
LEU
67
A
ASN
68
n
68
ASN
68
A
LEU
69
n
69
LEU
69
A
ASP
70
n
70
ASP
70
A
PHE
71
n
71
PHE
71
A
GLU
72
n
72
GLU
72
A
ARG
73
n
73
ARG
73
A
GLU
74
n
74
GLU
74
A
HIS
75
n
75
HIS
75
A
ARG
76
n
76
ARG
76
A
ARG
77
n
77
ARG
77
A
LYS
78
n
78
LYS
78
A
GLY
79
n
79
GLY
79
A
SER
80
n
80
SER
80
A
ILE
81
n
81
ILE
81
A
PHE
82
n
82
PHE
82
A
MET
83
n
83
MET
83
A
ASP
84
n
84
ASP
84
A
PHE
85
n
85
PHE
85
A
ARG
86
n
86
ARG
86
A
ASN
87
n
87
ASN
87
A
GLU
88
n
88
GLU
88
A
LEU
89
n
89
LEU
89
A
LYS
90
n
90
LYS
90
A
ASN
91
n
91
ASN
91
A
LEU
92
n
92
LEU
92
A
ASN
93
n
93
ASN
93
A
HIS
94
n
94
HIS
94
A
ASN
95
n
95
ASN
95
A
THR
96
n
96
THR
96
A
ILE
97
n
97
ILE
97
A
LEU
98
n
98
LEU
98
A
TYR
99
n
99
TYR
99
A
GLY
100
n
100
GLY
100
A
HIS
101
n
101
HIS
101
A
HIS
102
n
102
HIS
102
A
VAL
103
n
103
VAL
103
A
GLY
104
n
104
GLY
104
A
ASP
105
n
105
ASP
105
A
ASN
106
n
106
ASN
106
A
THR
107
n
107
THR
107
A
MET
108
n
108
MET
108
A
PHE
109
n
109
PHE
109
A
ASP
110
n
110
ASP
110
A
VAL
111
n
111
VAL
111
A
LEU
112
n
112
LEU
112
A
GLU
113
n
113
GLU
113
A
ASP
114
n
114
ASP
114
A
TYR
115
n
115
TYR
115
A
LEU
116
n
116
LEU
116
A
LYS
117
n
117
LYS
117
A
GLN
118
n
118
GLN
118
A
SER
119
n
119
SER
119
A
PHE
120
n
120
PHE
120
A
TYR
121
n
121
TYR
121
A
GLU
122
n
122
GLU
122
A
LYS
123
n
123
LYS
123
A
HIS
124
n
124
HIS
124
A
LYS
125
n
125
LYS
125
A
ILE
126
n
126
ILE
126
A
ILE
127
n
127
ILE
127
A
GLU
128
n
128
GLU
128
A
PHE
129
n
129
PHE
129
A
ASP
130
n
130
ASP
130
A
ASN
131
n
131
ASN
131
A
LYS
132
n
132
LYS
132
A
TYR
133
n
133
TYR
133
A
GLY
134
n
134
GLY
134
A
LYS
135
n
135
LYS
135
A
TYR
136
n
136
TYR
136
A
GLN
137
n
137
GLN
137
A
LEU
138
n
138
LEU
138
A
GLN
139
n
139
GLN
139
A
VAL
140
n
140
VAL
140
A
PHE
141
n
141
PHE
141
A
SER
142
n
142
SER
142
A
ALA
143
n
143
ALA
143
A
TYR
144
n
144
TYR
144
A
LYS
145
n
145
LYS
145
A
THR
146
n
146
THR
146
A
THR
147
n
147
THR
147
A
THR
148
n
148
THR
148
A
LYS
149
n
149
LYS
149
A
ASP
150
n
150
ASP
150
A
ASN
151
n
151
ASN
151
A
TYR
152
n
152
TYR
152
A
ILE
153
n
153
ILE
153
A
ARG
154
n
154
ARG
154
A
THR
155
n
155
THR
155
A
ASP
156
n
156
ASP
156
A
PHE
157
n
157
PHE
157
A
GLU
158
n
158
GLU
158
A
ASN
159
n
159
ASN
159
A
ASP
160
n
160
ASP
160
A
GLN
161
n
161
GLN
161
A
ASP
162
n
162
ASP
162
A
TYR
163
n
163
TYR
163
A
GLN
164
n
164
GLN
164
A
GLN
165
n
165
GLN
165
A
PHE
166
n
166
PHE
166
A
LEU
167
n
167
LEU
167
A
ASP
168
n
168
ASP
168
A
GLU
169
n
169
GLU
169
A
THR
170
n
170
THR
170
A
LYS
171
n
171
LYS
171
A
ARG
172
n
172
ARG
172
A
LYS
173
n
173
LYS
173
A
SER
174
n
174
SER
174
A
VAL
175
n
175
VAL
175
A
ILE
176
n
176
ILE
176
A
ASN
177
n
177
ASN
177
A
SER
178
n
178
SER
178
A
ASP
179
n
179
ASP
179
A
VAL
180
n
180
VAL
180
A
ASN
181
n
181
ASN
181
A
VAL
182
n
182
VAL
182
A
THR
183
n
183
THR
183
A
VAL
184
n
184
VAL
184
A
LYS
185
n
185
LYS
185
A
ASP
186
n
186
ASP
186
A
LYS
187
n
187
LYS
187
A
ILE
188
n
188
ILE
188
A
MET
189
n
189
MET
189
A
THR
190
n
190
THR
190
A
LEU
191
n
191
LEU
191
A
SER
192
n
192
SER
192
A
THR
193
n
193
THR
193
A
CYS
194
n
194
CYS
194
A
GLU
195
n
195
GLU
195
A
ASP
196
n
196
ASP
196
A
ALA
197
n
197
ALA
197
A
TYR
198
n
198
TYR
198
A
SER
199
n
199
SER
199
A
GLU
200
n
200
GLU
200
A
THR
201
n
201
THR
201
A
THR
202
n
202
THR
202
A
LYS
203
n
203
LYS
203
A
ARG
204
n
204
ARG
204
A
ILE
205
n
205
ILE
205
A
VAL
206
n
206
VAL
206
A
VAL
207
n
207
VAL
207
A
VAL
208
n
208
VAL
208
A
ALA
209
n
209
ALA
209
A
LYS
210
n
210
LYS
210
A
ILE
211
n
211
ILE
211
A
ILE
212
n
212
ILE
212
A
LYS
213
n
213
LYS
213
A
VAL
214
n
214
VAL
214
A
SER
215
n
215
SER
215
A
n
1
1
B
n
2
2
B
n
3
3
B
n
4
4
B
GLN
5
n
5
GLN
5
B
GLU
6
n
6
GLU
6
B
ARG
7
n
7
ARG
7
B
ALA
8
n
8
ALA
8
B
ASN
9
n
9
ASN
9
B
TYR
10
n
10
TYR
10
B
GLU
11
n
11
GLU
11
B
LYS
12
n
12
LYS
12
B
LEU
13
n
13
LEU
13
B
GLN
14
n
14
GLN
14
B
GLN
15
n
15
GLN
15
B
LYS
16
n
16
LYS
16
B
PHE
17
n
17
PHE
17
B
GLN
18
n
18
GLN
18
B
MET
19
n
19
MET
19
B
LEU
20
n
20
LEU
20
B
MET
21
n
21
MET
21
B
SER
22
n
22
SER
22
B
LYS
23
n
23
LYS
23
B
HIS
24
n
24
HIS
24
B
GLN
25
n
25
GLN
25
B
ALA
26
n
26
ALA
26
B
HIS
27
n
27
HIS
27
B
VAL
28
n
28
VAL
28
B
ARG
29
n
29
ARG
29
B
PRO
30
n
30
PRO
30
B
GLN
31
n
31
GLN
31
B
PHE
32
n
32
PHE
32
B
GLU
33
n
33
GLU
33
B
SER
34
n
34
SER
34
B
LEU
35
n
35
LEU
35
B
GLU
36
n
36
GLU
36
B
LYS
37
n
37
LYS
37
B
ILE
38
n
38
ILE
38
B
ASN
39
n
39
ASN
39
B
LYS
40
n
40
LYS
40
B
ASP
41
n
41
ASP
41
B
ILE
42
n
42
ILE
42
B
VAL
43
n
43
VAL
43
B
GLY
44
n
44
GLY
44
B
TRP
45
n
45
TRP
45
B
ILE
46
n
46
ILE
46
B
LYS
47
n
47
LYS
47
B
LEU
48
n
48
LEU
48
B
SER
49
n
49
SER
49
B
GLY
50
n
50
GLY
50
B
THR
51
n
51
THR
51
B
SER
52
n
52
SER
52
B
LEU
53
n
53
LEU
53
B
ASN
54
n
54
ASN
54
B
TYR
55
n
55
TYR
55
B
PRO
56
n
56
PRO
56
B
VAL
57
n
57
VAL
57
B
LEU
58
n
58
LEU
58
B
GLN
59
n
59
GLN
59
B
GLY
60
n
60
GLY
60
B
LYS
61
n
61
LYS
61
B
THR
62
n
62
THR
62
B
ASN
63
n
63
ASN
63
B
HIS
64
n
64
HIS
64
B
ASP
65
n
65
ASP
65
B
TYR
66
n
66
TYR
66
B
LEU
67
n
67
LEU
67
B
ASN
68
n
68
ASN
68
B
LEU
69
n
69
LEU
69
B
ASP
70
n
70
ASP
70
B
PHE
71
n
71
PHE
71
B
GLU
72
n
72
GLU
72
B
ARG
73
n
73
ARG
73
B
ALA
74
n
74
GLU
74
B
HIS
75
n
75
HIS
75
B
ARG
76
n
76
ARG
76
B
ARG
77
n
77
ARG
77
B
LYS
78
n
78
LYS
78
B
GLY
79
n
79
GLY
79
B
SER
80
n
80
SER
80
B
ILE
81
n
81
ILE
81
B
PHE
82
n
82
PHE
82
B
MET
83
n
83
MET
83
B
ASP
84
n
84
ASP
84
B
PHE
85
n
85
PHE
85
B
ARG
86
n
86
ARG
86
B
ASN
87
n
87
ASN
87
B
GLU
88
n
88
GLU
88
B
LEU
89
n
89
LEU
89
B
LYS
90
n
90
LYS
90
B
ASN
91
n
91
ASN
91
B
LEU
92
n
92
LEU
92
B
ASN
93
n
93
ASN
93
B
HIS
94
n
94
HIS
94
B
ASN
95
n
95
ASN
95
B
THR
96
n
96
THR
96
B
ILE
97
n
97
ILE
97
B
LEU
98
n
98
LEU
98
B
TYR
99
n
99
TYR
99
B
GLY
100
n
100
GLY
100
B
HIS
101
n
101
HIS
101
B
HIS
102
n
102
HIS
102
B
VAL
103
n
103
VAL
103
B
GLY
104
n
104
GLY
104
B
ASP
105
n
105
ASP
105
B
ASN
106
n
106
ASN
106
B
THR
107
n
107
THR
107
B
MET
108
n
108
MET
108
B
PHE
109
n
109
PHE
109
B
ASP
110
n
110
ASP
110
B
VAL
111
n
111
VAL
111
B
LEU
112
n
112
LEU
112
B
GLU
113
n
113
GLU
113
B
ASP
114
n
114
ASP
114
B
TYR
115
n
115
TYR
115
B
LEU
116
n
116
LEU
116
B
LYS
117
n
117
LYS
117
B
GLN
118
n
118
GLN
118
B
SER
119
n
119
SER
119
B
PHE
120
n
120
PHE
120
B
TYR
121
n
121
TYR
121
B
GLU
122
n
122
GLU
122
B
LYS
123
n
123
LYS
123
B
HIS
124
n
124
HIS
124
B
LYS
125
n
125
LYS
125
B
ILE
126
n
126
ILE
126
B
ILE
127
n
127
ILE
127
B
GLU
128
n
128
GLU
128
B
PHE
129
n
129
PHE
129
B
ASP
130
n
130
ASP
130
B
ASN
131
n
131
ASN
131
B
LYS
132
n
132
LYS
132
B
TYR
133
n
133
TYR
133
B
GLY
134
n
134
GLY
134
B
LYS
135
n
135
LYS
135
B
TYR
136
n
136
TYR
136
B
GLN
137
n
137
GLN
137
B
LEU
138
n
138
LEU
138
B
GLN
139
n
139
GLN
139
B
VAL
140
n
140
VAL
140
B
PHE
141
n
141
PHE
141
B
SER
142
n
142
SER
142
B
ALA
143
n
143
ALA
143
B
TYR
144
n
144
TYR
144
B
LYS
145
n
145
LYS
145
B
THR
146
n
146
THR
146
B
THR
147
n
147
THR
147
B
n
148
148
B
n
149
149
B
n
150
150
B
n
151
151
B
n
152
152
B
ILE
153
n
153
ILE
153
B
ARG
154
n
154
ARG
154
B
THR
155
n
155
THR
155
B
ASP
156
n
156
ASP
156
B
PHE
157
n
157
PHE
157
B
GLU
158
n
158
GLU
158
B
ASN
159
n
159
ASN
159
B
ASP
160
n
160
ASP
160
B
GLN
161
n
161
GLN
161
B
ASP
162
n
162
ASP
162
B
TYR
163
n
163
TYR
163
B
GLN
164
n
164
GLN
164
B
GLN
165
n
165
GLN
165
B
PHE
166
n
166
PHE
166
B
LEU
167
n
167
LEU
167
B
ASP
168
n
168
ASP
168
B
GLU
169
n
169
GLU
169
B
THR
170
n
170
THR
170
B
LYS
171
n
171
LYS
171
B
ARG
172
n
172
ARG
172
B
LYS
173
n
173
LYS
173
B
SER
174
n
174
SER
174
B
VAL
175
n
175
VAL
175
B
ILE
176
n
176
ILE
176
B
ASN
177
n
177
ASN
177
B
SER
178
n
178
SER
178
B
ASP
179
n
179
ASP
179
B
VAL
180
n
180
VAL
180
B
ASN
181
n
181
ASN
181
B
VAL
182
n
182
VAL
182
B
THR
183
n
183
THR
183
B
VAL
184
n
184
VAL
184
B
LYS
185
n
185
LYS
185
B
ASP
186
n
186
ASP
186
B
LYS
187
n
187
LYS
187
B
ILE
188
n
188
ILE
188
B
MET
189
n
189
MET
189
B
THR
190
n
190
THR
190
B
LEU
191
n
191
LEU
191
B
SER
192
n
192
SER
192
B
THR
193
n
193
THR
193
B
CYS
194
n
194
CYS
194
B
GLU
195
n
195
GLU
195
B
ASP
196
n
196
ASP
196
B
ALA
197
n
197
ALA
197
B
TYR
198
n
198
TYR
198
B
SER
199
n
199
SER
199
B
GLU
200
n
200
GLU
200
B
THR
201
n
201
THR
201
B
THR
202
n
202
THR
202
B
LYS
203
n
203
LYS
203
B
ARG
204
n
204
ARG
204
B
ILE
205
n
205
ILE
205
B
VAL
206
n
206
VAL
206
B
VAL
207
n
207
VAL
207
B
VAL
208
n
208
VAL
208
B
ALA
209
n
209
ALA
209
B
LYS
210
n
210
LYS
210
B
ILE
211
n
211
ILE
211
B
ILE
212
n
212
ILE
212
B
LYS
213
n
213
LYS
213
B
VAL
214
n
214
VAL
214
B
SER
215
n
215
SER
215
B
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
44
A
N
GLY
44
A
O
VAL
57
A
O
VAL
57
A
N
LEU
58
A
N
LEU
58
A
O
MET
83
A
O
MET
83
A
N
PHE
82
A
N
PHE
82
A
O
TYR
99
A
O
TYR
99
A
N
THR
96
A
N
THR
96
A
O
ILE
188
A
O
ILE
188
A
N
LEU
191
A
N
LEU
191
A
O
VAL
207
A
O
VAL
207
A
O
ILE
212
A
O
ILE
212
A
N
GLN
137
A
N
GLN
137
A
O
LEU
138
A
O
LEU
138
A
N
ILE
127
A
N
ILE
127
A
O
GLU
128
A
O
GLU
128
A
N
LYS
47
A
N
LYS
47
B
N
GLY
44
B
N
GLY
44
B
O
VAL
57
B
O
VAL
57
B
N
LEU
58
B
N
LEU
58
B
O
ILE
81
B
O
ILE
81
B
N
PHE
82
B
N
PHE
82
B
O
TYR
99
B
O
TYR
99
B
N
THR
96
B
N
THR
96
B
O
THR
190
B
O
THR
190
B
N
LEU
191
B
N
LEU
191
B
O
VAL
207
B
O
VAL
207
B
O
ILE
212
B
O
ILE
212
B
N
GLN
137
B
N
GLN
137
B
O
LEU
138
B
O
LEU
138
B
N
ILE
127
B
N
ILE
127
B
O
ASP
130
B
O
ASP
130
B
N
TRP
45
B
N
TRP
45
1
B
CG
GLU
74
B
CG
GLU
74
1
Y
1
B
CD
GLU
74
B
CD
GLU
74
1
Y
1
B
OE1
GLU
74
B
OE1
GLU
74
1
Y
1
B
OE2
GLU
74
B
OE2
GLU
74
1
Y
1
A
MET
1
A
MET
1
1
Y
1
A
GLU
2
A
GLU
2
1
Y
1
A
ASP
3
A
ASP
3
1
Y
1
A
LYS
4
A
LYS
4
1
Y
1
B
MET
1
B
MET
1
1
Y
1
B
GLU
2
B
GLU
2
1
Y
1
B
ASP
3
B
ASP
3
1
Y
1
B
LYS
4
B
LYS
4
1
Y
1
B
THR
148
B
THR
148
1
Y
1
B
LYS
149
B
LYS
149
1
Y
1
B
ASP
150
B
ASP
150
1
Y
1
B
ASN
151
B
ASN
151
1
Y
1
B
TYR
152
B
TYR
152
1
Y
1
A
A
O
O
HOH
HOH
415
415
1.82
1_555
2_555
1
A
HIS
24
-91.36
48.19
1
A
GLN
25
-41.18
-70.85
1
A
VAL
28
-142.53
-36.89
1
A
LEU
53
-69.39
98.33
1
A
ASN
54
-165.49
76.07
1
A
ASP
105
-153.71
30.02
1
A
MET
108
50.12
-123.32
1
A
PHE
109
-94.40
32.83
1
A
TYR
115
-68.96
1.87
1
A
HIS
124
-142.61
49.02
1
A
THR
146
-145.43
-151.45
1
A
VAL
184
-58.43
-2.06
1
B
GLN
25
3.39
-99.86
1
B
ASN
54
-162.37
79.12
1
B
LEU
89
-88.17
-72.08
1
B
LEU
92
-33.97
138.53
1
B
HIS
102
-143.34
50.16
1
B
VAL
103
-67.86
0.62
1
B
ASP
105
-69.07
-178.54
1
B
MET
108
48.64
-120.48
1
B
HIS
124
-145.78
54.45
1
B
ALA
143
-166.74
119.21
1
B
VAL
180
-23.32
132.83
1
B
VAL
184
-68.75
7.70
1
B
THR
201
-60.84
92.12
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
31.7
11.56
0.00
0.00
-8.30
0.00
-3.26
The number of reflections for refinement is greater than the number of reflections for data collection, because in CNS (hlml taget) refinement, the Friedel's pair was treated as two seperated reflections.
0.248
0.005
0.237
0.237
2.00
42.09
2466
56561
50697
4.9
89.6
RANDOM
1
RESTRAINED
THROUGHOUT
0.0
MAD
Engh & Huber
FLAT MODEL
82.368
0.431764
0.31
0.39
2.00
42.09
307
3799
0
0
3492
0.009
1.3
23.7
0.75
0.357
0.019
0.352
2.13
348
6563
6
5.0
73.7
11.9
1.97
50
1NG5
31422
29674
4.0
4.0
0.11
1
13.0
6.0
94.4
0.537
1.97
2.05
1.63
2739
1
4.81
79.5
refinement
CNS
0.9
data reduction
d*TREK
data scaling
HKL-2000
phasing
CNS
2.0 A crystal structure of Staphylococcus aureus Sortase B
1
N
N
1
N
N
2
N
N
2
N
N
Sortase B existed as monomer,
There are two molecules (A,B) in
asymmetric unit.
A
GLN
5
A
GLN
5
HELX_P
A
HIS
24
A
HIS
24
1
1
20
A
VAL
28
A
VAL
28
HELX_P
A
ASN
39
A
ASN
39
1
2
12
A
THR
107
A
THR
107
HELX_P
A
LEU
116
A
LEU
116
5
3
10
A
LYS
117
A
LYS
117
HELX_P
A
HIS
124
A
HIS
124
1
4
8
A
ASN
159
A
ASN
159
HELX_P
A
SER
174
A
SER
174
1
5
16
B
GLN
5
B
GLN
5
HELX_P
B
HIS
24
B
HIS
24
1
6
20
B
VAL
28
B
VAL
28
HELX_P
B
GLU
36
B
GLU
36
1
7
9
B
THR
107
B
THR
107
HELX_P
B
LEU
116
B
LEU
116
5
8
10
B
LYS
117
B
LYS
117
HELX_P
B
HIS
124
B
HIS
124
1
9
8
B
ASN
159
B
ASN
159
HELX_P
B
SER
174
B
SER
174
1
10
16
HYDROLASE, TRANSFERASE
structural genomics, a new fold, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, HYDROLASE, TRANSFERASE
Q7A650_STAAN
UNP
1
31
Q7A650
EDKQERANYEKLQQKFQMLMSKHQAHVRPQFESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSI
FMDFRNELKNLNHNTILYGHHVGDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDNYIRTDFENDQ
DYQQFLDETKRKSVINSDVNVTVKDRIMTLSTCEDAYSETTKRIVVVAKIIKVS
31
244
1NG5
2
215
Q7A650
A
1
2
215
31
244
1NG5
2
215
Q7A650
B
1
2
215
1
initiating methionine
MET
1
1NG5
A
Q7A650
UNP
1
2
initiating methionine
MET
1
1NG5
B
Q7A650
UNP
1
9
9
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
42
A
ILE
42
A
LYS
47
A
LYS
47
A
ASN
54
A
ASN
54
A
LEU
58
A
LEU
58
A
ILE
81
A
ILE
81
A
MET
83
A
MET
83
A
ASN
95
A
ASN
95
A
HIS
101
A
HIS
101
A
LYS
187
A
LYS
187
A
CYS
194
A
CYS
194
A
LYS
203
A
LYS
203
A
LYS
213
A
LYS
213
A
GLY
134
A
GLY
134
A
THR
147
A
THR
147
A
ILE
126
A
ILE
126
A
ASN
131
A
ASN
131
A
ILE
42
A
ILE
42
A
LYS
47
A
LYS
47
B
ILE
42
B
ILE
42
B
LYS
47
B
LYS
47
B
ASN
54
B
ASN
54
B
LEU
58
B
LEU
58
B
ILE
81
B
ILE
81
B
MET
83
B
MET
83
B
ASN
95
B
ASN
95
B
GLY
100
B
GLY
100
B
LYS
187
B
LYS
187
B
THR
193
B
THR
193
B
ARG
204
B
ARG
204
B
LYS
213
B
LYS
213
B
GLY
134
B
GLY
134
B
THR
146
B
THR
146
B
ILE
126
B
ILE
126
B
ASN
131
B
ASN
131
B
ILE
42
B
ILE
42
B
LYS
47
B
LYS
47
18
P 21 21 2