0.020585
0.011885
0.000000
0.000000
0.023769
0.000000
0.000000
0.000000
0.006823
0.00000
0.00000
0.00000
Wu, P.
Qiu, C.
Sohail, A.
Zhang, X.
Bhagwat, A.S.
Cheng, X.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
48.580
48.580
146.570
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
278
5285
5291
10.1074/jbc.M210884200
12456671
Mismatch repair in methylated DNA. Structure and activity of the mismatch-specific thymine glycosylase domain of methyl-CpG-binding protein MBD4
2003
10.2210/pdb1ngn/pdb
pdb_00001ngn
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
100
1
100
1
IMAGE PLATE
2000-10-16
RIGAKU RAXIS IV
CCD
2000-11-05
BRANDEIS - B2
CCD
2001-02-08
ADSC QUANTUM 4
Osmic mirror
SINGLE WAVELENGTH
M
x-ray
1
NSLS X12C optics
MAD
M
x-ray
1
NSLS X26C optics
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
0.9789
1.0
0.97865
1.0
0.95
1.0
1.1
1.0
1.5418
ROTATING ANODE
RIGAKU RU300
X12C
NSLS
0.9789, 0.97865, 0.95
SYNCHROTRON
NSLS BEAMLINE X12C
X26C
NSLS
1.1
SYNCHROTRON
NSLS BEAMLINE X26C
18567.395
methyl-CpG binding protein MBD4
glycosylase domain
1
man
polymer
18.015
water
90
nat
water
no
no
ALSPPRRKSFKKWTPPRSPFNLVQEILFHDPWKLLIATIFLNRTSGKMAIPVLWEFLEKYPSAEVARAADWRDVSELLKP
LGLYDLRAKTIIKFSDEYLTKQWRYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENHEKLSLS
ALSPPRRKSFKKWTPPRSPFNLVQEILFHDPWKLLIATIFLNRTSGKMAIPVLWEFLEKYPSAEVARAADWRDVSELLKP
LGLYDLRAKTIIKFSDEYLTKQWRYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENHEKLSLS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
Escherichia
sample
Mbd4
10090
Mus musculus
562
Escherichia coli
modified pET28b
1
2.69
54.23
VAPOR DIFFUSION, HANGING DROP
5.26
PEG 2000 monomethyl ether, ammonium sulfate, ethylene glycol, sodium citrate, pH 5.26, VAPOR DIFFUSION, HANGING DROP, temperature 289K
289
software
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Database references
1
0
2003-03-18
1
1
2008-04-29
1
2
2011-07-13
1
3
2017-10-11
1
4
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
RCSB
Y
RCSB
2002-12-17
REL
HOH
water
HOH
1
2
HOH
HOH
1
A
HOH
2
2
HOH
HOH
2
A
HOH
3
2
HOH
HOH
3
A
HOH
4
2
HOH
HOH
4
A
HOH
5
2
HOH
HOH
5
A
HOH
6
2
HOH
HOH
6
A
HOH
7
2
HOH
HOH
7
A
HOH
8
2
HOH
HOH
8
A
HOH
9
2
HOH
HOH
9
A
HOH
10
2
HOH
HOH
10
A
HOH
11
2
HOH
HOH
11
A
HOH
12
2
HOH
HOH
12
A
HOH
13
2
HOH
HOH
13
A
HOH
14
2
HOH
HOH
14
A
HOH
15
2
HOH
HOH
15
A
HOH
16
2
HOH
HOH
16
A
HOH
17
2
HOH
HOH
17
A
HOH
18
2
HOH
HOH
18
A
HOH
19
2
HOH
HOH
19
A
HOH
20
2
HOH
HOH
20
A
HOH
21
2
HOH
HOH
21
A
HOH
22
2
HOH
HOH
22
A
HOH
23
2
HOH
HOH
23
A
HOH
25
2
HOH
HOH
25
A
HOH
26
2
HOH
HOH
26
A
HOH
27
2
HOH
HOH
27
A
HOH
28
2
HOH
HOH
28
A
HOH
29
2
HOH
HOH
29
A
HOH
30
2
HOH
HOH
30
A
HOH
31
2
HOH
HOH
31
A
HOH
32
2
HOH
HOH
32
A
HOH
33
2
HOH
HOH
33
A
HOH
34
2
HOH
HOH
34
A
HOH
35
2
HOH
HOH
35
A
HOH
36
2
HOH
HOH
36
A
HOH
37
2
HOH
HOH
37
A
HOH
38
2
HOH
HOH
38
A
HOH
39
2
HOH
HOH
39
A
HOH
40
2
HOH
HOH
40
A
HOH
41
2
HOH
HOH
41
A
HOH
42
2
HOH
HOH
42
A
HOH
43
2
HOH
HOH
43
A
HOH
44
2
HOH
HOH
44
A
HOH
45
2
HOH
HOH
45
A
HOH
46
2
HOH
HOH
46
A
HOH
47
2
HOH
HOH
47
A
HOH
48
2
HOH
HOH
48
A
HOH
49
2
HOH
HOH
49
A
HOH
50
2
HOH
HOH
50
A
HOH
51
2
HOH
HOH
51
A
HOH
52
2
HOH
HOH
52
A
HOH
53
2
HOH
HOH
53
A
HOH
54
2
HOH
HOH
54
A
HOH
55
2
HOH
HOH
55
A
HOH
56
2
HOH
HOH
56
A
HOH
57
2
HOH
HOH
57
A
HOH
58
2
HOH
HOH
58
A
HOH
59
2
HOH
HOH
59
A
HOH
60
2
HOH
HOH
60
A
HOH
61
2
HOH
HOH
61
A
HOH
62
2
HOH
HOH
62
A
HOH
63
2
HOH
HOH
63
A
HOH
64
2
HOH
HOH
64
A
HOH
65
2
HOH
HOH
65
A
HOH
66
2
HOH
HOH
66
A
HOH
67
2
HOH
HOH
67
A
HOH
68
2
HOH
HOH
68
A
HOH
69
2
HOH
HOH
69
A
HOH
70
2
HOH
HOH
70
A
HOH
71
2
HOH
HOH
71
A
HOH
73
2
HOH
HOH
73
A
HOH
74
2
HOH
HOH
74
A
HOH
75
2
HOH
HOH
75
A
HOH
76
2
HOH
HOH
76
A
HOH
77
2
HOH
HOH
77
A
HOH
78
2
HOH
HOH
78
A
HOH
79
2
HOH
HOH
79
A
HOH
80
2
HOH
HOH
80
A
HOH
81
2
HOH
HOH
81
A
HOH
82
2
HOH
HOH
82
A
HOH
83
2
HOH
HOH
83
A
HOH
84
2
HOH
HOH
84
A
HOH
85
2
HOH
HOH
85
A
HOH
86
2
HOH
HOH
86
A
HOH
87
2
HOH
HOH
87
A
HOH
88
2
HOH
HOH
88
A
HOH
89
2
HOH
HOH
89
A
HOH
90
2
HOH
HOH
90
A
HOH
91
2
HOH
HOH
91
A
HOH
92
2
HOH
HOH
92
A
n
1
400
A
n
2
401
A
n
3
402
A
n
4
403
A
n
5
404
A
n
6
405
A
n
7
406
A
n
8
407
A
n
9
408
A
n
10
409
A
n
11
410
A
LYS
411
n
12
LYS
411
A
TRP
412
n
13
TRP
412
A
THR
413
n
14
THR
413
A
PRO
414
n
15
PRO
414
A
PRO
415
n
16
PRO
415
A
ARG
416
n
17
ARG
416
A
SER
417
n
18
SER
417
A
PRO
418
n
19
PRO
418
A
PHE
419
n
20
PHE
419
A
ASN
420
n
21
ASN
420
A
LEU
421
n
22
LEU
421
A
VAL
422
n
23
VAL
422
A
GLN
423
n
24
GLN
423
A
GLU
424
n
25
GLU
424
A
ILE
425
n
26
ILE
425
A
LEU
426
n
27
LEU
426
A
PHE
427
n
28
PHE
427
A
HIS
428
n
29
HIS
428
A
ASP
429
n
30
ASP
429
A
PRO
430
n
31
PRO
430
A
TRP
431
n
32
TRP
431
A
LYS
432
n
33
LYS
432
A
LEU
433
n
34
LEU
433
A
LEU
434
n
35
LEU
434
A
ILE
435
n
36
ILE
435
A
ALA
436
n
37
ALA
436
A
THR
437
n
38
THR
437
A
ILE
438
n
39
ILE
438
A
PHE
439
n
40
PHE
439
A
LEU
440
n
41
LEU
440
A
ASN
441
n
42
ASN
441
A
ARG
442
n
43
ARG
442
A
THR
443
n
44
THR
443
A
SER
444
n
45
SER
444
A
GLY
445
n
46
GLY
445
A
LYS
446
n
47
LYS
446
A
MET
447
n
48
MET
447
A
ALA
448
n
49
ALA
448
A
ILE
449
n
50
ILE
449
A
PRO
450
n
51
PRO
450
A
VAL
451
n
52
VAL
451
A
LEU
452
n
53
LEU
452
A
TRP
453
n
54
TRP
453
A
GLU
454
n
55
GLU
454
A
PHE
455
n
56
PHE
455
A
LEU
456
n
57
LEU
456
A
GLU
457
n
58
GLU
457
A
LYS
458
n
59
LYS
458
A
TYR
459
n
60
TYR
459
A
PRO
460
n
61
PRO
460
A
SER
461
n
62
SER
461
A
ALA
462
n
63
ALA
462
A
GLU
463
n
64
GLU
463
A
VAL
464
n
65
VAL
464
A
ALA
465
n
66
ALA
465
A
ARG
466
n
67
ARG
466
A
ALA
467
n
68
ALA
467
A
ALA
468
n
69
ALA
468
A
ASP
469
n
70
ASP
469
A
TRP
470
n
71
TRP
470
A
ARG
471
n
72
ARG
471
A
ASP
472
n
73
ASP
472
A
VAL
473
n
74
VAL
473
A
SER
474
n
75
SER
474
A
GLU
475
n
76
GLU
475
A
LEU
476
n
77
LEU
476
A
LEU
477
n
78
LEU
477
A
LYS
478
n
79
LYS
478
A
PRO
479
n
80
PRO
479
A
LEU
480
n
81
LEU
480
A
GLY
481
n
82
GLY
481
A
LEU
482
n
83
LEU
482
A
TYR
483
n
84
TYR
483
A
ASP
484
n
85
ASP
484
A
LEU
485
n
86
LEU
485
A
ARG
486
n
87
ARG
486
A
ALA
487
n
88
ALA
487
A
LYS
488
n
89
LYS
488
A
THR
489
n
90
THR
489
A
ILE
490
n
91
ILE
490
A
ILE
491
n
92
ILE
491
A
LYS
492
n
93
LYS
492
A
PHE
493
n
94
PHE
493
A
SER
494
n
95
SER
494
A
ASP
495
n
96
ASP
495
A
GLU
496
n
97
GLU
496
A
TYR
497
n
98
TYR
497
A
LEU
498
n
99
LEU
498
A
THR
499
n
100
THR
499
A
LYS
500
n
101
LYS
500
A
GLN
501
n
102
GLN
501
A
TRP
502
n
103
TRP
502
A
ARG
503
n
104
ARG
503
A
TYR
504
n
105
TYR
504
A
PRO
505
n
106
PRO
505
A
ILE
506
n
107
ILE
506
A
GLU
507
n
108
GLU
507
A
LEU
508
n
109
LEU
508
A
HIS
509
n
110
HIS
509
A
GLY
510
n
111
GLY
510
A
ILE
511
n
112
ILE
511
A
GLY
512
n
113
GLY
512
A
LYS
513
n
114
LYS
513
A
TYR
514
n
115
TYR
514
A
GLY
515
n
116
GLY
515
A
ASN
516
n
117
ASN
516
A
ASP
517
n
118
ASP
517
A
SER
518
n
119
SER
518
A
TYR
519
n
120
TYR
519
A
ARG
520
n
121
ARG
520
A
ILE
521
n
122
ILE
521
A
PHE
522
n
123
PHE
522
A
CYS
523
n
124
CYS
523
A
VAL
524
n
125
VAL
524
A
ASN
525
n
126
ASN
525
A
GLU
526
n
127
GLU
526
A
TRP
527
n
128
TRP
527
A
LYS
528
n
129
LYS
528
A
GLN
529
n
130
GLN
529
A
VAL
530
n
131
VAL
530
A
HIS
531
n
132
HIS
531
A
PRO
532
n
133
PRO
532
A
GLU
533
n
134
GLU
533
A
ASP
534
n
135
ASP
534
A
HIS
535
n
136
HIS
535
A
LYS
536
n
137
LYS
536
A
LEU
537
n
138
LEU
537
A
ASN
538
n
139
ASN
538
A
LYS
539
n
140
LYS
539
A
TYR
540
n
141
TYR
540
A
HIS
541
n
142
HIS
541
A
ASP
542
n
143
ASP
542
A
TRP
543
n
144
TRP
543
A
LEU
544
n
145
LEU
544
A
TRP
545
n
146
TRP
545
A
GLU
546
n
147
GLU
546
A
ASN
547
n
148
ASN
547
A
HIS
548
n
149
HIS
548
A
GLU
549
n
150
GLU
549
A
LYS
550
n
151
LYS
550
A
LEU
551
n
152
LEU
551
A
SER
552
n
153
SER
552
A
LEU
553
n
154
LEU
553
A
SER
554
n
155
SER
554
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
CG
ARG
416
A
CG
ARG
17
1
Y
1
A
CD
ARG
416
A
CD
ARG
17
1
Y
1
A
NE
ARG
416
A
NE
ARG
17
1
Y
1
A
CZ
ARG
416
A
CZ
ARG
17
1
Y
1
A
NH1
ARG
416
A
NH1
ARG
17
1
Y
1
A
NH2
ARG
416
A
NH2
ARG
17
1
Y
1
A
CB
ASN
420
A
CB
ASN
21
1
Y
1
A
CG
ASN
420
A
CG
ASN
21
1
Y
1
A
OD1
ASN
420
A
OD1
ASN
21
1
Y
1
A
ND2
ASN
420
A
ND2
ASN
21
1
Y
1
A
CG
LYS
446
A
CG
LYS
47
1
Y
1
A
CD
LYS
446
A
CD
LYS
47
1
Y
1
A
CE
LYS
446
A
CE
LYS
47
1
Y
1
A
NZ
LYS
446
A
NZ
LYS
47
1
Y
1
A
CG
LYS
550
A
CG
LYS
151
1
Y
1
A
CD
LYS
550
A
CD
LYS
151
1
Y
1
A
CE
LYS
550
A
CE
LYS
151
1
Y
1
A
NZ
LYS
550
A
NZ
LYS
151
1
Y
1
A
ALA
400
A
ALA
1
1
Y
1
A
LEU
401
A
LEU
2
1
Y
1
A
SER
402
A
SER
3
1
Y
1
A
PRO
403
A
PRO
4
1
Y
1
A
PRO
404
A
PRO
5
1
Y
1
A
ARG
405
A
ARG
6
1
Y
1
A
ARG
406
A
ARG
7
1
Y
1
A
LYS
407
A
LYS
8
1
Y
1
A
SER
408
A
SER
9
1
Y
1
A
PHE
409
A
PHE
10
1
Y
1
A
LYS
410
A
LYS
11
1
Y
1
15.24
2.30
115.30
130.54
A
A
A
CA
CB
CG
LEU
LEU
LEU
433
433
433
N
1
A
GLU
526
-142.44
19.92
1
A
LEU
551
-74.67
-76.28
1
A
SER
552
163.03
-2.28
26.8
2.09
1.87
0.00
2.09
0.00
-4.18
0.263
0.213
2.1
19.33
894
11028
11028
99.5
RANDOM
1
Isotropic
THROUGHOUT
2.0
MAD
proXPLOR:tein_rep.param
0.30
0.24
19.33
0.19
0.21
2.1
19.33
92
1306
0
0
1214
0.007
1.4
24.2
0.65
0.287
0.021
0.285
2.18
1788
12345
94.1
180
2125
80.8
22.9
2.1
20.
1NGN
12345
12345
-3.0
0.046
1,2,3
42.7
8.73
99.5
0.098
2.1
2.14
585
99.8
data scaling
SCALEPACK
phasing
SOLVE
refinement
X-PLOR
3.851
Mismatch repair in methylated DNA. Structure of the mismatch-specific thymine glycosylase domain of methyl-CpG-binding protein MBD4
1
N
N
2
N
N
A
VAL
422
A
VAL
23
HELX_P
A
PHE
427
A
PHE
28
1
1
6
A
ASP
429
A
ASP
30
HELX_P
A
ASN
441
A
ASN
42
1
2
13
A
SER
444
A
SER
45
HELX_P
A
TYR
459
A
TYR
60
1
3
16
A
SER
461
A
SER
62
HELX_P
A
ALA
468
A
ALA
69
1
4
8
A
ASP
469
A
ASP
70
HELX_P
A
LEU
477
A
LEU
78
1
5
9
A
LYS
478
A
LYS
79
HELX_P
A
GLY
481
A
GLY
82
5
6
4
A
LEU
482
A
LEU
83
HELX_P
A
LYS
500
A
LYS
101
1
7
19
A
TYR
504
A
TYR
105
HELX_P
A
LEU
508
A
LEU
109
5
8
5
A
GLY
512
A
GLY
113
HELX_P
A
CYS
523
A
CYS
124
1
9
12
A
GLU
526
A
GLU
127
HELX_P
A
VAL
530
A
VAL
131
5
10
5
A
ASP
534
A
ASP
135
HELX_P
A
SER
552
A
SER
153
1
11
19
DNA BINDING PROTEIN
mismacth repair in methylated DNA, DNA BINDING PROTEIN
MBD4_MOUSE
UNP
1
400
Q9Z2D7
ALSPPRRKSFKKWTPPRSPFNLVQEILFHDPWKLLIATIFLNRTSGKMAIPVLWEFLEKYPSAEVARAADWRDVSELLKP
LGLYDLRAKTIIKFSDEYLTKQWRYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENHEKLSLS
400
554
1NGN
400
554
Q9Z2D7
A
1
1
155
152
P 31 2 1