0.020585 0.011885 0.000000 0.000000 0.023769 0.000000 0.000000 0.000000 0.006823 0.00000 0.00000 0.00000 Wu, P. Qiu, C. Sohail, A. Zhang, X. Bhagwat, A.S. Cheng, X. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 48.580 48.580 146.570 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 278 5285 5291 10.1074/jbc.M210884200 12456671 Mismatch repair in methylated DNA. Structure and activity of the mismatch-specific thymine glycosylase domain of methyl-CpG-binding protein MBD4 2003 10.2210/pdb1ngn/pdb pdb_00001ngn 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 100 1 100 1 IMAGE PLATE 2000-10-16 RIGAKU RAXIS IV CCD 2000-11-05 BRANDEIS - B2 CCD 2001-02-08 ADSC QUANTUM 4 Osmic mirror SINGLE WAVELENGTH M x-ray 1 NSLS X12C optics MAD M x-ray 1 NSLS X26C optics SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 0.9789 1.0 0.97865 1.0 0.95 1.0 1.1 1.0 1.5418 ROTATING ANODE RIGAKU RU300 X12C NSLS 0.9789, 0.97865, 0.95 SYNCHROTRON NSLS BEAMLINE X12C X26C NSLS 1.1 SYNCHROTRON NSLS BEAMLINE X26C 18567.395 methyl-CpG binding protein MBD4 glycosylase domain 1 man polymer 18.015 water 90 nat water no no ALSPPRRKSFKKWTPPRSPFNLVQEILFHDPWKLLIATIFLNRTSGKMAIPVLWEFLEKYPSAEVARAADWRDVSELLKP LGLYDLRAKTIIKFSDEYLTKQWRYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENHEKLSLS ALSPPRRKSFKKWTPPRSPFNLVQEILFHDPWKLLIATIFLNRTSGKMAIPVLWEFLEKYPSAEVARAADWRDVSELLKP LGLYDLRAKTIIKFSDEYLTKQWRYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENHEKLSLS A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus Escherichia sample Mbd4 10090 Mus musculus 562 Escherichia coli modified pET28b 1 2.69 54.23 VAPOR DIFFUSION, HANGING DROP 5.26 PEG 2000 monomethyl ether, ammonium sulfate, ethylene glycol, sodium citrate, pH 5.26, VAPOR DIFFUSION, HANGING DROP, temperature 289K 289 software chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Version format compliance Refinement description Data collection Database references 1 0 2003-03-18 1 1 2008-04-29 1 2 2011-07-13 1 3 2017-10-11 1 4 2024-02-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession RCSB Y RCSB 2002-12-17 REL HOH water HOH 1 2 HOH HOH 1 A HOH 2 2 HOH HOH 2 A HOH 3 2 HOH HOH 3 A HOH 4 2 HOH HOH 4 A HOH 5 2 HOH HOH 5 A HOH 6 2 HOH HOH 6 A HOH 7 2 HOH HOH 7 A HOH 8 2 HOH HOH 8 A HOH 9 2 HOH HOH 9 A HOH 10 2 HOH HOH 10 A HOH 11 2 HOH HOH 11 A HOH 12 2 HOH HOH 12 A HOH 13 2 HOH HOH 13 A HOH 14 2 HOH HOH 14 A HOH 15 2 HOH HOH 15 A HOH 16 2 HOH HOH 16 A HOH 17 2 HOH HOH 17 A HOH 18 2 HOH HOH 18 A HOH 19 2 HOH HOH 19 A HOH 20 2 HOH HOH 20 A HOH 21 2 HOH HOH 21 A HOH 22 2 HOH HOH 22 A HOH 23 2 HOH HOH 23 A HOH 25 2 HOH HOH 25 A HOH 26 2 HOH HOH 26 A HOH 27 2 HOH HOH 27 A HOH 28 2 HOH HOH 28 A HOH 29 2 HOH HOH 29 A HOH 30 2 HOH HOH 30 A HOH 31 2 HOH HOH 31 A HOH 32 2 HOH HOH 32 A HOH 33 2 HOH HOH 33 A HOH 34 2 HOH HOH 34 A HOH 35 2 HOH HOH 35 A HOH 36 2 HOH HOH 36 A HOH 37 2 HOH HOH 37 A HOH 38 2 HOH HOH 38 A HOH 39 2 HOH HOH 39 A HOH 40 2 HOH HOH 40 A HOH 41 2 HOH HOH 41 A HOH 42 2 HOH HOH 42 A HOH 43 2 HOH HOH 43 A HOH 44 2 HOH HOH 44 A HOH 45 2 HOH HOH 45 A HOH 46 2 HOH HOH 46 A HOH 47 2 HOH HOH 47 A HOH 48 2 HOH HOH 48 A HOH 49 2 HOH HOH 49 A HOH 50 2 HOH HOH 50 A HOH 51 2 HOH HOH 51 A HOH 52 2 HOH HOH 52 A HOH 53 2 HOH HOH 53 A HOH 54 2 HOH HOH 54 A HOH 55 2 HOH HOH 55 A HOH 56 2 HOH HOH 56 A HOH 57 2 HOH HOH 57 A HOH 58 2 HOH HOH 58 A HOH 59 2 HOH HOH 59 A HOH 60 2 HOH HOH 60 A HOH 61 2 HOH HOH 61 A HOH 62 2 HOH HOH 62 A HOH 63 2 HOH HOH 63 A HOH 64 2 HOH HOH 64 A HOH 65 2 HOH HOH 65 A HOH 66 2 HOH HOH 66 A HOH 67 2 HOH HOH 67 A HOH 68 2 HOH HOH 68 A HOH 69 2 HOH HOH 69 A HOH 70 2 HOH HOH 70 A HOH 71 2 HOH HOH 71 A HOH 73 2 HOH HOH 73 A HOH 74 2 HOH HOH 74 A HOH 75 2 HOH HOH 75 A HOH 76 2 HOH HOH 76 A HOH 77 2 HOH HOH 77 A HOH 78 2 HOH HOH 78 A HOH 79 2 HOH HOH 79 A HOH 80 2 HOH HOH 80 A HOH 81 2 HOH HOH 81 A HOH 82 2 HOH HOH 82 A HOH 83 2 HOH HOH 83 A HOH 84 2 HOH HOH 84 A HOH 85 2 HOH HOH 85 A HOH 86 2 HOH HOH 86 A HOH 87 2 HOH HOH 87 A HOH 88 2 HOH HOH 88 A HOH 89 2 HOH HOH 89 A HOH 90 2 HOH HOH 90 A HOH 91 2 HOH HOH 91 A HOH 92 2 HOH HOH 92 A n 1 400 A n 2 401 A n 3 402 A n 4 403 A n 5 404 A n 6 405 A n 7 406 A n 8 407 A n 9 408 A n 10 409 A n 11 410 A LYS 411 n 12 LYS 411 A TRP 412 n 13 TRP 412 A THR 413 n 14 THR 413 A PRO 414 n 15 PRO 414 A PRO 415 n 16 PRO 415 A ARG 416 n 17 ARG 416 A SER 417 n 18 SER 417 A PRO 418 n 19 PRO 418 A PHE 419 n 20 PHE 419 A ASN 420 n 21 ASN 420 A LEU 421 n 22 LEU 421 A VAL 422 n 23 VAL 422 A GLN 423 n 24 GLN 423 A GLU 424 n 25 GLU 424 A ILE 425 n 26 ILE 425 A LEU 426 n 27 LEU 426 A PHE 427 n 28 PHE 427 A HIS 428 n 29 HIS 428 A ASP 429 n 30 ASP 429 A PRO 430 n 31 PRO 430 A TRP 431 n 32 TRP 431 A LYS 432 n 33 LYS 432 A LEU 433 n 34 LEU 433 A LEU 434 n 35 LEU 434 A ILE 435 n 36 ILE 435 A ALA 436 n 37 ALA 436 A THR 437 n 38 THR 437 A ILE 438 n 39 ILE 438 A PHE 439 n 40 PHE 439 A LEU 440 n 41 LEU 440 A ASN 441 n 42 ASN 441 A ARG 442 n 43 ARG 442 A THR 443 n 44 THR 443 A SER 444 n 45 SER 444 A GLY 445 n 46 GLY 445 A LYS 446 n 47 LYS 446 A MET 447 n 48 MET 447 A ALA 448 n 49 ALA 448 A ILE 449 n 50 ILE 449 A PRO 450 n 51 PRO 450 A VAL 451 n 52 VAL 451 A LEU 452 n 53 LEU 452 A TRP 453 n 54 TRP 453 A GLU 454 n 55 GLU 454 A PHE 455 n 56 PHE 455 A LEU 456 n 57 LEU 456 A GLU 457 n 58 GLU 457 A LYS 458 n 59 LYS 458 A TYR 459 n 60 TYR 459 A PRO 460 n 61 PRO 460 A SER 461 n 62 SER 461 A ALA 462 n 63 ALA 462 A GLU 463 n 64 GLU 463 A VAL 464 n 65 VAL 464 A ALA 465 n 66 ALA 465 A ARG 466 n 67 ARG 466 A ALA 467 n 68 ALA 467 A ALA 468 n 69 ALA 468 A ASP 469 n 70 ASP 469 A TRP 470 n 71 TRP 470 A ARG 471 n 72 ARG 471 A ASP 472 n 73 ASP 472 A VAL 473 n 74 VAL 473 A SER 474 n 75 SER 474 A GLU 475 n 76 GLU 475 A LEU 476 n 77 LEU 476 A LEU 477 n 78 LEU 477 A LYS 478 n 79 LYS 478 A PRO 479 n 80 PRO 479 A LEU 480 n 81 LEU 480 A GLY 481 n 82 GLY 481 A LEU 482 n 83 LEU 482 A TYR 483 n 84 TYR 483 A ASP 484 n 85 ASP 484 A LEU 485 n 86 LEU 485 A ARG 486 n 87 ARG 486 A ALA 487 n 88 ALA 487 A LYS 488 n 89 LYS 488 A THR 489 n 90 THR 489 A ILE 490 n 91 ILE 490 A ILE 491 n 92 ILE 491 A LYS 492 n 93 LYS 492 A PHE 493 n 94 PHE 493 A SER 494 n 95 SER 494 A ASP 495 n 96 ASP 495 A GLU 496 n 97 GLU 496 A TYR 497 n 98 TYR 497 A LEU 498 n 99 LEU 498 A THR 499 n 100 THR 499 A LYS 500 n 101 LYS 500 A GLN 501 n 102 GLN 501 A TRP 502 n 103 TRP 502 A ARG 503 n 104 ARG 503 A TYR 504 n 105 TYR 504 A PRO 505 n 106 PRO 505 A ILE 506 n 107 ILE 506 A GLU 507 n 108 GLU 507 A LEU 508 n 109 LEU 508 A HIS 509 n 110 HIS 509 A GLY 510 n 111 GLY 510 A ILE 511 n 112 ILE 511 A GLY 512 n 113 GLY 512 A LYS 513 n 114 LYS 513 A TYR 514 n 115 TYR 514 A GLY 515 n 116 GLY 515 A ASN 516 n 117 ASN 516 A ASP 517 n 118 ASP 517 A SER 518 n 119 SER 518 A TYR 519 n 120 TYR 519 A ARG 520 n 121 ARG 520 A ILE 521 n 122 ILE 521 A PHE 522 n 123 PHE 522 A CYS 523 n 124 CYS 523 A VAL 524 n 125 VAL 524 A ASN 525 n 126 ASN 525 A GLU 526 n 127 GLU 526 A TRP 527 n 128 TRP 527 A LYS 528 n 129 LYS 528 A GLN 529 n 130 GLN 529 A VAL 530 n 131 VAL 530 A HIS 531 n 132 HIS 531 A PRO 532 n 133 PRO 532 A GLU 533 n 134 GLU 533 A ASP 534 n 135 ASP 534 A HIS 535 n 136 HIS 535 A LYS 536 n 137 LYS 536 A LEU 537 n 138 LEU 537 A ASN 538 n 139 ASN 538 A LYS 539 n 140 LYS 539 A TYR 540 n 141 TYR 540 A HIS 541 n 142 HIS 541 A ASP 542 n 143 ASP 542 A TRP 543 n 144 TRP 543 A LEU 544 n 145 LEU 544 A TRP 545 n 146 TRP 545 A GLU 546 n 147 GLU 546 A ASN 547 n 148 ASN 547 A HIS 548 n 149 HIS 548 A GLU 549 n 150 GLU 549 A LYS 550 n 151 LYS 550 A LEU 551 n 152 LEU 551 A SER 552 n 153 SER 552 A LEU 553 n 154 LEU 553 A SER 554 n 155 SER 554 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A CG ARG 416 A CG ARG 17 1 Y 1 A CD ARG 416 A CD ARG 17 1 Y 1 A NE ARG 416 A NE ARG 17 1 Y 1 A CZ ARG 416 A CZ ARG 17 1 Y 1 A NH1 ARG 416 A NH1 ARG 17 1 Y 1 A NH2 ARG 416 A NH2 ARG 17 1 Y 1 A CB ASN 420 A CB ASN 21 1 Y 1 A CG ASN 420 A CG ASN 21 1 Y 1 A OD1 ASN 420 A OD1 ASN 21 1 Y 1 A ND2 ASN 420 A ND2 ASN 21 1 Y 1 A CG LYS 446 A CG LYS 47 1 Y 1 A CD LYS 446 A CD LYS 47 1 Y 1 A CE LYS 446 A CE LYS 47 1 Y 1 A NZ LYS 446 A NZ LYS 47 1 Y 1 A CG LYS 550 A CG LYS 151 1 Y 1 A CD LYS 550 A CD LYS 151 1 Y 1 A CE LYS 550 A CE LYS 151 1 Y 1 A NZ LYS 550 A NZ LYS 151 1 Y 1 A ALA 400 A ALA 1 1 Y 1 A LEU 401 A LEU 2 1 Y 1 A SER 402 A SER 3 1 Y 1 A PRO 403 A PRO 4 1 Y 1 A PRO 404 A PRO 5 1 Y 1 A ARG 405 A ARG 6 1 Y 1 A ARG 406 A ARG 7 1 Y 1 A LYS 407 A LYS 8 1 Y 1 A SER 408 A SER 9 1 Y 1 A PHE 409 A PHE 10 1 Y 1 A LYS 410 A LYS 11 1 Y 1 15.24 2.30 115.30 130.54 A A A CA CB CG LEU LEU LEU 433 433 433 N 1 A GLU 526 -142.44 19.92 1 A LEU 551 -74.67 -76.28 1 A SER 552 163.03 -2.28 26.8 2.09 1.87 0.00 2.09 0.00 -4.18 0.263 0.213 2.1 19.33 894 11028 11028 99.5 RANDOM 1 Isotropic THROUGHOUT 2.0 MAD proXPLOR:tein_rep.param 0.30 0.24 19.33 0.19 0.21 2.1 19.33 92 1306 0 0 1214 0.007 1.4 24.2 0.65 0.287 0.021 0.285 2.18 1788 12345 94.1 180 2125 80.8 22.9 2.1 20. 1NGN 12345 12345 -3.0 0.046 1,2,3 42.7 8.73 99.5 0.098 2.1 2.14 585 99.8 data scaling SCALEPACK phasing SOLVE refinement X-PLOR 3.851 Mismatch repair in methylated DNA. Structure of the mismatch-specific thymine glycosylase domain of methyl-CpG-binding protein MBD4 1 N N 2 N N A VAL 422 A VAL 23 HELX_P A PHE 427 A PHE 28 1 1 6 A ASP 429 A ASP 30 HELX_P A ASN 441 A ASN 42 1 2 13 A SER 444 A SER 45 HELX_P A TYR 459 A TYR 60 1 3 16 A SER 461 A SER 62 HELX_P A ALA 468 A ALA 69 1 4 8 A ASP 469 A ASP 70 HELX_P A LEU 477 A LEU 78 1 5 9 A LYS 478 A LYS 79 HELX_P A GLY 481 A GLY 82 5 6 4 A LEU 482 A LEU 83 HELX_P A LYS 500 A LYS 101 1 7 19 A TYR 504 A TYR 105 HELX_P A LEU 508 A LEU 109 5 8 5 A GLY 512 A GLY 113 HELX_P A CYS 523 A CYS 124 1 9 12 A GLU 526 A GLU 127 HELX_P A VAL 530 A VAL 131 5 10 5 A ASP 534 A ASP 135 HELX_P A SER 552 A SER 153 1 11 19 DNA BINDING PROTEIN mismacth repair in methylated DNA, DNA BINDING PROTEIN MBD4_MOUSE UNP 1 400 Q9Z2D7 ALSPPRRKSFKKWTPPRSPFNLVQEILFHDPWKLLIATIFLNRTSGKMAIPVLWEFLEKYPSAEVARAADWRDVSELLKP LGLYDLRAKTIIKFSDEYLTKQWRYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENHEKLSLS 400 554 1NGN 400 554 Q9Z2D7 A 1 1 155 152 P 31 2 1