1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Otting, G.
Liepinsh, E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
EMBO J.
EMJODG
0897
0261-4189
16
4999
5005
10.1093/emboj/16.16.4999
9305641
NMR structure of the death domain of the p75 neurotrophin receptor.
1997
10.2210/pdb1ngr/pdb
pdb_00001ngr
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
9429.558
P75 LOW AFFINITY NEUROTROPHIN RECEPTOR
DEATH DOMAIN, RESIDUES 281 - 425
1
man
polymer
no
no
GNLYSSLPLTKREEVEKLLNGDTWRHLAGELGYQPEHIDSFTHEACPVRALLASWGAQDSATLDALLAALRRIQRADIVE
SLCSE
GNLYSSLPLTKREEVEKLLNGDTWRHLAGELGYQPEHIDSFTHEACPVRALLASWGAQDSATLDALLAALRRIQRADIVE
SLCSE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Norway rat
Rattus
Escherichia
sample
NERVE CELLS
CYTOPLASM
10116
Rattus norvegicus
562
Escherichia coli
M15-(PREP4)
PQE31
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1997-07-29
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
Y
BNL
1997-01-28
REL
REL
DISTANCE CONSTRAINTS FROM 3D NOESY-15N-HSQC AND 2D NOESY, COUPLING CONSTANTS FROM 3D HNHA-EXPERIMENT, 2QF-COSY, AND 15N-HSQC. A 15N-LABELED SAMPLE OF P75ICD WAS USED. CONSTRAINTS USED: 914 UPPER DISTANCE LIMITS FROM NOE DATA 154 COUPLING CONSTANTS CONSTRAINING DIHEDRAL ANGLES IONIC_STRENGTH: NO SALT ADDED PRESSURE: 1 ATM SOLVENT SYSTEM: 90% H2O/10% D2O
LOWEST TARGET FUNCTION AFTER DIANA
50
20
NOESY
COSY
TOCSY
3D NOESY-15N-HSQC
3D TOCSY-HSQC
3D HNHA
7.0
301
K
DIANA MINIMIZATION TO TARGET FUNCTION LESS THAN 1, RESTRAINED ENERGY MINIMIZATION USING OPAL
VARIABLE TARGET FUNCTION (DIANA) APPROACH
LUGINBUHL
refinement
OPAL
structure solution
EASY
structure solution
HABAS
structure solution
DIANA
structure solution
OPAL
800
Bruker
DMX800
600
Bruker
DMX600
GLY
334
n
1
GLY
334
A
ASN
335
n
2
ASN
335
A
LEU
336
n
3
LEU
336
A
TYR
337
n
4
TYR
337
A
SER
338
n
5
SER
338
A
SER
339
n
6
SER
339
A
LEU
340
n
7
LEU
340
A
PRO
341
n
8
PRO
341
A
LEU
342
n
9
LEU
342
A
THR
343
n
10
THR
343
A
LYS
344
n
11
LYS
344
A
ARG
345
n
12
ARG
345
A
GLU
346
n
13
GLU
346
A
GLU
347
n
14
GLU
347
A
VAL
348
n
15
VAL
348
A
GLU
349
n
16
GLU
349
A
LYS
350
n
17
LYS
350
A
LEU
351
n
18
LEU
351
A
LEU
352
n
19
LEU
352
A
ASN
353
n
20
ASN
353
A
GLY
354
n
21
GLY
354
A
ASP
355
n
22
ASP
355
A
THR
356
n
23
THR
356
A
TRP
357
n
24
TRP
357
A
ARG
358
n
25
ARG
358
A
HIS
359
n
26
HIS
359
A
LEU
360
n
27
LEU
360
A
ALA
361
n
28
ALA
361
A
GLY
362
n
29
GLY
362
A
GLU
363
n
30
GLU
363
A
LEU
364
n
31
LEU
364
A
GLY
365
n
32
GLY
365
A
TYR
366
n
33
TYR
366
A
GLN
367
n
34
GLN
367
A
PRO
368
n
35
PRO
368
A
GLU
369
n
36
GLU
369
A
HIS
370
n
37
HIS
370
A
ILE
371
n
38
ILE
371
A
ASP
372
n
39
ASP
372
A
SER
373
n
40
SER
373
A
PHE
374
n
41
PHE
374
A
THR
375
n
42
THR
375
A
HIS
376
n
43
HIS
376
A
GLU
377
n
44
GLU
377
A
ALA
378
n
45
ALA
378
A
CYS
379
n
46
CYS
379
A
PRO
380
n
47
PRO
380
A
VAL
381
n
48
VAL
381
A
ARG
382
n
49
ARG
382
A
ALA
383
n
50
ALA
383
A
LEU
384
n
51
LEU
384
A
LEU
385
n
52
LEU
385
A
ALA
386
n
53
ALA
386
A
SER
387
n
54
SER
387
A
TRP
388
n
55
TRP
388
A
GLY
389
n
56
GLY
389
A
ALA
390
n
57
ALA
390
A
GLN
391
n
58
GLN
391
A
ASP
392
n
59
ASP
392
A
SER
393
n
60
SER
393
A
ALA
394
n
61
ALA
394
A
THR
395
n
62
THR
395
A
LEU
396
n
63
LEU
396
A
ASP
397
n
64
ASP
397
A
ALA
398
n
65
ALA
398
A
LEU
399
n
66
LEU
399
A
LEU
400
n
67
LEU
400
A
ALA
401
n
68
ALA
401
A
ALA
402
n
69
ALA
402
A
LEU
403
n
70
LEU
403
A
ARG
404
n
71
ARG
404
A
ARG
405
n
72
ARG
405
A
ILE
406
n
73
ILE
406
A
GLN
407
n
74
GLN
407
A
ARG
408
n
75
ARG
408
A
ALA
409
n
76
ALA
409
A
ASP
410
n
77
ASP
410
A
ILE
411
n
78
ILE
411
A
VAL
412
n
79
VAL
412
A
GLU
413
n
80
GLU
413
A
SER
414
n
81
SER
414
A
LEU
415
n
82
LEU
415
A
CYS
416
n
83
CYS
416
A
SER
417
n
84
SER
417
A
GLU
418
n
85
GLU
418
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
19
A
CA
GLU
413
PLANAR
2
A
A
HG
OXT
SER
GLU
414
418
1.56
2
A
A
HG
OE1
SER
GLU
417
418
1.60
3
A
A
HG
OE2
SER
GLU
417
418
1.54
7
A
A
HG
OE1
SER
GLU
414
418
1.56
19
A
A
HG
OE2
SER
GLU
417
418
1.57
1
A
SER
373
-10.40
7
A
SER
373
-10.36
1
A
ARG
382
0.085
SIDE CHAIN
2
A
TYR
337
0.093
SIDE CHAIN
3
A
ARG
408
0.105
SIDE CHAIN
4
A
ARG
382
0.097
SIDE CHAIN
4
A
ARG
405
0.082
SIDE CHAIN
5
A
ARG
408
0.110
SIDE CHAIN
6
A
ARG
345
0.080
SIDE CHAIN
6
A
TYR
366
0.092
SIDE CHAIN
6
A
ARG
408
0.092
SIDE CHAIN
7
A
ARG
345
0.106
SIDE CHAIN
7
A
ARG
405
0.140
SIDE CHAIN
8
A
ARG
382
0.109
SIDE CHAIN
9
A
TYR
337
0.063
SIDE CHAIN
9
A
TYR
366
0.065
SIDE CHAIN
10
A
TYR
366
0.065
SIDE CHAIN
10
A
ARG
382
0.123
SIDE CHAIN
10
A
ARG
405
0.140
SIDE CHAIN
11
A
TYR
337
0.113
SIDE CHAIN
11
A
TYR
366
0.067
SIDE CHAIN
11
A
ARG
382
0.077
SIDE CHAIN
11
A
ARG
405
0.152
SIDE CHAIN
12
A
ARG
408
0.092
SIDE CHAIN
13
A
TYR
366
0.073
SIDE CHAIN
13
A
ARG
382
0.077
SIDE CHAIN
13
A
ARG
404
0.101
SIDE CHAIN
15
A
TYR
337
0.074
SIDE CHAIN
15
A
TYR
366
0.074
SIDE CHAIN
15
A
ARG
382
0.104
SIDE CHAIN
16
A
ARG
345
0.077
SIDE CHAIN
16
A
ARG
382
0.094
SIDE CHAIN
17
A
TYR
337
0.082
SIDE CHAIN
17
A
ARG
345
0.077
SIDE CHAIN
17
A
TYR
366
0.069
SIDE CHAIN
18
A
TYR
366
0.095
SIDE CHAIN
18
A
ARG
405
0.148
SIDE CHAIN
19
A
TYR
366
0.115
SIDE CHAIN
20
A
TYR
337
0.078
SIDE CHAIN
2
11.45
1.40
123.60
135.05
A
A
A
CD
NE
CZ
ARG
ARG
ARG
345
345
345
N
2
-3.00
0.50
120.30
117.30
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
345
345
345
N
2
17.22
2.00
110.40
127.62
A
A
A
CB
CA
C
GLU
GLU
GLU
413
413
413
N
4
13.55
2.00
110.40
123.95
A
A
A
CB
CA
C
GLU
GLU
GLU
413
413
413
N
5
-4.25
0.60
121.00
116.75
A
A
A
CB
CG
CD2
TYR
TYR
TYR
337
337
337
N
6
-3.71
0.60
121.00
117.29
A
A
A
CB
CG
CD2
TYR
TYR
TYR
337
337
337
N
10
15.31
2.00
110.40
125.71
A
A
A
CB
CA
C
GLU
GLU
GLU
413
413
413
N
12
-5.11
0.60
121.00
115.89
A
A
A
CB
CG
CD2
TYR
TYR
TYR
337
337
337
N
13
-3.24
0.50
120.30
117.06
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
408
408
408
N
14
3.24
0.50
120.30
123.54
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
404
404
404
N
16
-4.52
0.60
121.00
116.48
A
A
A
CB
CG
CD2
TYR
TYR
TYR
337
337
337
N
17
-5.84
0.60
121.00
115.16
A
A
A
CB
CG
CD2
TYR
TYR
TYR
337
337
337
N
17
14.48
2.00
110.40
124.88
A
A
A
CB
CA
C
GLU
GLU
GLU
413
413
413
N
19
15.52
2.00
110.40
125.92
A
A
A
CB
CA
C
GLU
GLU
GLU
413
413
413
N
1
A
SER
338
-59.81
-7.58
1
A
THR
343
-48.36
-12.28
1
A
ASP
355
178.13
-71.48
1
A
PRO
380
-54.73
-80.25
1
A
GLN
407
44.18
19.13
1
A
SER
417
-158.22
-61.27
2
A
LEU
342
-147.46
-105.42
2
A
THR
343
-28.67
-38.18
2
A
LEU
352
-69.92
59.49
2
A
ASP
355
-165.06
-61.24
2
A
PRO
380
-53.26
-74.55
2
A
SER
393
-170.39
-19.08
2
A
GLN
407
54.53
18.90
2
A
SER
417
-149.86
-61.10
3
A
LEU
336
-61.87
-179.25
3
A
THR
343
-48.61
-9.88
3
A
ASP
355
177.79
-59.06
3
A
PRO
380
-55.75
-83.44
3
A
SER
393
148.40
-29.79
3
A
GLN
407
52.94
19.06
3
A
SER
417
137.27
-61.12
4
A
PRO
380
-58.04
-87.34
4
A
ASP
392
-49.31
102.13
4
A
ALA
394
-66.70
57.94
4
A
GLN
407
48.81
19.13
4
A
SER
417
59.00
-28.12
5
A
LEU
342
-148.24
-86.68
5
A
THR
343
-29.15
-51.96
5
A
ASN
353
-37.76
144.67
5
A
ASP
355
169.62
-43.55
5
A
PRO
380
-53.76
-74.68
5
A
ASP
392
-56.00
102.14
5
A
ALA
394
-69.39
48.63
5
A
GLN
407
49.89
27.85
5
A
SER
417
-126.82
-61.93
6
A
TYR
337
-95.86
-60.28
6
A
THR
343
-55.58
-8.07
6
A
ASP
355
177.73
-67.06
6
A
PRO
380
-52.22
-71.29
6
A
SER
393
134.89
-5.31
6
A
ALA
394
-68.79
57.15
6
A
GLN
407
55.94
19.04
6
A
SER
417
58.01
-62.21
7
A
ASP
355
174.29
-70.92
7
A
PRO
380
-57.32
-80.16
7
A
SER
417
-158.72
-51.31
8
A
THR
343
-47.82
-13.96
8
A
LEU
352
-69.66
55.73
8
A
ASP
355
-175.07
-64.64
8
A
PRO
380
-56.06
-79.04
8
A
SER
393
-69.10
0.44
8
A
ALA
394
-78.17
48.48
8
A
GLN
407
52.40
18.94
8
A
SER
417
58.69
-28.81
9
A
THR
343
-53.93
-8.71
9
A
ASP
355
168.77
-66.04
9
A
LEU
364
-91.26
42.56
9
A
PRO
380
-57.89
-76.73
9
A
SER
393
135.73
-4.97
9
A
ALA
394
-70.94
49.11
9
A
GLN
407
53.02
18.88
9
A
SER
417
-153.88
-61.35
10
A
SER
338
-59.05
-9.45
10
A
THR
343
-54.70
-3.57
10
A
ASP
355
169.22
-55.03
10
A
PRO
380
-61.59
-88.29
10
A
SER
393
145.68
-16.98
10
A
GLN
407
55.91
18.80
10
A
SER
417
-159.76
-48.70
11
A
LEU
342
-150.96
-50.03
11
A
LEU
352
-69.66
61.31
11
A
ASP
355
169.26
-54.70
11
A
LEU
364
-88.85
32.67
11
A
PRO
380
-58.50
-80.85
11
A
ALA
394
-66.14
53.23
11
A
GLN
407
49.38
19.13
11
A
SER
417
78.74
-28.68
12
A
SER
338
-59.25
1.63
12
A
LEU
342
-148.13
-74.48
12
A
ASN
353
-38.48
143.20
12
A
ASP
355
174.42
-44.51
12
A
LEU
364
-79.14
29.09
12
A
GLU
377
-49.11
167.99
12
A
PRO
380
-55.61
-77.73
12
A
SER
393
110.15
10.93
12
A
ALA
394
-64.71
56.44
12
A
ARG
408
-78.98
45.79
13
A
SER
338
-68.86
1.47
13
A
THR
343
-60.12
0.90
13
A
ASN
353
-44.54
150.57
13
A
ASP
355
168.80
-40.03
13
A
PRO
380
-54.17
-76.63
14
A
THR
343
-64.83
0.69
14
A
ASP
355
-177.33
-58.77
14
A
PRO
380
-56.82
-84.47
14
A
ASP
392
-49.12
102.00
14
A
ALA
394
-59.84
64.66
14
A
SER
417
-166.75
-61.92
15
A
THR
343
-52.77
-5.30
15
A
ASP
355
173.45
-57.26
15
A
PRO
380
-56.76
-75.02
15
A
SER
393
138.65
-12.92
15
A
ALA
394
-69.69
63.87
15
A
GLN
407
52.43
18.71
15
A
SER
417
58.74
-29.86
16
A
ASP
355
-174.31
-70.97
16
A
PRO
380
-54.03
-76.82
16
A
SER
393
-68.79
1.93
16
A
ALA
394
-79.54
48.57
16
A
GLN
407
52.67
19.21
16
A
SER
417
58.55
-29.03
17
A
TYR
337
-97.26
-60.90
17
A
LEU
342
-151.12
-56.98
17
A
PRO
380
-56.36
-84.02
17
A
SER
393
124.97
2.46
17
A
GLN
407
49.36
19.55
17
A
SER
417
58.89
-31.36
18
A
ASP
355
178.41
-68.45
18
A
LEU
364
-79.31
28.82
18
A
PRO
380
-54.37
-77.77
18
A
SER
393
134.31
-10.78
18
A
ALA
394
-74.74
48.90
18
A
GLN
407
47.18
18.48
18
A
SER
417
59.03
-29.15
19
A
PRO
341
-71.15
-70.84
19
A
LEU
342
-143.76
-45.39
19
A
ASN
353
-44.75
154.85
19
A
ASP
355
168.73
-44.56
19
A
PRO
380
-51.22
-73.47
19
A
SER
417
-94.11
-60.86
20
A
PRO
341
-62.43
-70.55
20
A
LEU
342
-148.21
-30.93
20
A
LEU
352
-69.25
61.47
20
A
ASP
355
-174.46
-66.13
20
A
PRO
380
-54.12
-74.03
20
A
SER
393
135.34
-10.19
20
A
GLN
407
46.96
18.38
20
A
SER
417
58.44
-29.85
DEATH DOMAIN OF P75 LOW AFFINITY NEUROTROPHIN RECEPTOR, RESIDUES 334-418, NMR, 20 STRUCTURES
1
Y
N
A
THR
343
A
THR
10
HELX_P
A
LEU
351
A
LEU
18
5
A1
9
A
THR
356
A
THR
23
HELX_P
A
GLU
363
A
GLU
30
1
A2
8
A
PRO
368
A
PRO
35
HELX_P
A
THR
375
A
THR
42
1
A3
8
A
PRO
380
A
PRO
47
HELX_P
A
ALA
390
A
ALA
57
1
A4
11
A
LEU
396
A
LEU
63
HELX_P
A
ARG
405
A
ARG
72
1
A5
10
A
ALA
409
A
ALA
76
HELX_P
A
CYS
416
A
CYS
83
1
A6
8
RECEPTOR
RECEPTOR, P75, INTRACELLULAR DOMAIN, NEUROTROPHIN RECEPTOR, DEATH DOMAIN
TNR16_RAT
UNP
1
1
P07174
MRRAGAACSAMDRLRLLLLLILGVSSGGAKETCSTGLYTHSGECCKACNLGEGVAQPCGANQTVCEPCLDNVTFSDVVSA
TEPCKPCTECLGLQSMSAPCVEADDAVCRCAYGYYQDEETGHCEACSVCEVGSGLVFSCQDKQNTVCEECPEGTYSDEAN
HVDPCLPCTVCEDTERQLRECTPWADAECEEIPGRWIPRSTPPEGSDSTAPSTQEPEVPPEQDLVPSTVADMVTTVMGSS
QPVVTRGTTDNLIPVYCSILAAVVVGLVAYIAFKRWNSCKQNKQGANSRPVNQTPPPEGEKLHSDSGISVDSQSLHDQQT
HTQTASGQALKGDGNLYSSLPLTKREEVEKLLNGDTWRHLAGELGYQPEHIDSFTHEACPVRALLASWGAQDSATLDALL
AALRRIQRADIVESLCSESTATSPV
334
418
1NGR
334
418
P07174
A
1
1
85
1
P 1