1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
ASP 79 - ALA 80 OMEGA = 0.14 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
Read, C.M.
Cary, P.D.
Crane-Robinson, C.
Driscoll, P.C.
Carillo, M.O.M.
Norman, D.G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
GW
NUCLEIC ACIDS MOL.BIOL.
NAMBE8
2049
0933-1891
9
222
-1
The Structure of the Hmg Box and its Interaction with DNA
1995
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
21
3427
Solution Structure of a DNA-Binding Domain from Hmg1
1993
10.2210/pdb1nhm/pdb
pdb_00001nhm
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
8987.280
HIGH MOBILITY GROUP PROTEIN 1
1
man
polymer
no
no
GSNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDA
A
GSNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDA
A
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Chinese hamster
Cricetulus
Escherichia
sample
INSERT DERIVED BY PCR
10029
Cricetulus griseus
562
Escherichia coli
DH5 ALPHA
PGEX-2T
PGEX-2T GENE: INSERT DERIVED BY PCR
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1995-02-07
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
Y
BNL
1994-11-17
REL
1
NILGES ET AL.
refinement
SIMULATED ANNEALING, YASAP
BRUNGER
refinement
X-PLOR
3.0
n
1
1
A
n
2
2
A
ASN
3
n
3
ASN
3
A
ALA
4
n
4
ALA
4
A
PRO
5
n
5
PRO
5
A
LYS
6
n
6
LYS
6
A
ARG
7
n
7
ARG
7
A
PRO
8
n
8
PRO
8
A
PRO
9
n
9
PRO
9
A
SER
10
n
10
SER
10
A
ALA
11
n
11
ALA
11
A
PHE
12
n
12
PHE
12
A
PHE
13
n
13
PHE
13
A
LEU
14
n
14
LEU
14
A
PHE
15
n
15
PHE
15
A
CYS
16
n
16
CYS
16
A
SER
17
n
17
SER
17
A
GLU
18
n
18
GLU
18
A
TYR
19
n
19
TYR
19
A
ARG
20
n
20
ARG
20
A
PRO
21
n
21
PRO
21
A
LYS
22
n
22
LYS
22
A
ILE
23
n
23
ILE
23
A
LYS
24
n
24
LYS
24
A
GLY
25
n
25
GLY
25
A
GLU
26
n
26
GLU
26
A
HIS
27
n
27
HIS
27
A
PRO
28
n
28
PRO
28
A
GLY
29
n
29
GLY
29
A
LEU
30
n
30
LEU
30
A
SER
31
n
31
SER
31
A
ILE
32
n
32
ILE
32
A
GLY
33
n
33
GLY
33
A
ASP
34
n
34
ASP
34
A
VAL
35
n
35
VAL
35
A
ALA
36
n
36
ALA
36
A
LYS
37
n
37
LYS
37
A
LYS
38
n
38
LYS
38
A
LEU
39
n
39
LEU
39
A
GLY
40
n
40
GLY
40
A
GLU
41
n
41
GLU
41
A
MET
42
n
42
MET
42
A
TRP
43
n
43
TRP
43
A
ASN
44
n
44
ASN
44
A
ASN
45
n
45
ASN
45
A
THR
46
n
46
THR
46
A
ALA
47
n
47
ALA
47
A
ALA
48
n
48
ALA
48
A
ASP
49
n
49
ASP
49
A
ASP
50
n
50
ASP
50
A
LYS
51
n
51
LYS
51
A
GLN
52
n
52
GLN
52
A
PRO
53
n
53
PRO
53
A
TYR
54
n
54
TYR
54
A
GLU
55
n
55
GLU
55
A
LYS
56
n
56
LYS
56
A
LYS
57
n
57
LYS
57
A
ALA
58
n
58
ALA
58
A
ALA
59
n
59
ALA
59
A
LYS
60
n
60
LYS
60
A
LEU
61
n
61
LEU
61
A
LYS
62
n
62
LYS
62
A
GLU
63
n
63
GLU
63
A
LYS
64
n
64
LYS
64
A
TYR
65
n
65
TYR
65
A
GLU
66
n
66
GLU
66
A
LYS
67
n
67
LYS
67
A
ASP
68
n
68
ASP
68
A
ILE
69
n
69
ILE
69
A
ALA
70
n
70
ALA
70
A
ALA
71
n
71
ALA
71
A
TYR
72
n
72
TYR
72
A
ARG
73
n
73
ARG
73
A
ALA
74
n
74
ALA
74
A
LYS
75
n
75
LYS
75
A
GLY
76
n
76
GLY
76
A
LYS
77
n
77
LYS
77
A
PRO
78
n
78
PRO
78
A
ASP
79
n
79
ASP
79
A
ALA
80
n
80
ALA
80
A
ALA
81
n
81
ALA
81
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
GLY
1
A
GLY
1
1
Y
1
A
SER
2
A
SER
2
1
Y
1
A
ARG
7
0.314
SIDE CHAIN
1
A
ARG
20
0.315
SIDE CHAIN
1
A
ARG
73
0.312
SIDE CHAIN
1
-6.77
1.00
110.10
103.33
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
43
43
43
N
1
8.04
0.90
109.00
117.04
A
A
A
CD1
NE1
CE2
TRP
TRP
TRP
43
43
43
N
1
8.08
1.10
130.40
138.48
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
43
43
43
N
1
-6.23
1.00
107.30
101.07
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
43
43
43
N
1
A
ALA
4
3.31
77.35
1
A
PRO
5
-32.31
159.31
1
A
ARG
7
2.65
83.91
1
A
PRO
8
-53.11
176.63
1
A
PRO
9
-36.02
150.42
1
A
ALA
11
106.94
-68.11
1
A
HIS
27
-113.86
62.59
1
A
PRO
28
-79.33
36.48
1
A
GLU
41
-90.02
-60.64
1
A
THR
46
-97.66
-150.07
1
A
ALA
48
32.18
25.25
1
A
GLN
52
-27.31
-56.59
1
A
GLU
66
-39.43
-27.44
1
A
ALA
74
-98.85
37.94
1
A
ASP
79
85.44
61.55
1
A
ALA
80
152.27
58.65
model building
X-PLOR
3.0
refinement
X-PLOR
3.0
phasing
X-PLOR
3.0
THE STRUCTURE OF THE HMG BOX AND ITS INTERACTION WITH DNA
1
Y
N
A
PHE
12
A
PHE
12
HELX_P
A
GLU
18
A
GLU
18
1
H1
7
A
PRO
21
A
PRO
21
HELX_P
H1 AND H1' BEND AROUND H2
A
GLU
26
A
GLU
26
1
H1'
6
A
GLY
33
A
GLY
33
HELX_P
A
ASN
44
A
ASN
44
1
H2
12
A
PRO
53
A
PRO
53
HELX_P
A
ARG
73
A
ARG
73
1
H3
21
DNA-BINDING
DNA-BINDING
A
ASP
79
A
ASP
79
1
A
ALA
80
A
ALA
80
0.14
HMG1_CRIGR
UNP
1
1
P07156
VNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKG
EHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEE
DEEEEEEEEDEDEEEDDDDE
58
136
1NHM
3
81
P07156
A
1
3
81
1
P 1