0.007239
0.000000
0.000000
0.000000
0.007239
0.000000
0.000000
0.000000
0.007239
0.00000
0.00000
0.00000
Wright, C.S.
Hester, G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
48
90.00
90.00
90.00
138.149
138.149
138.149
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C6 H12 O6
180.156
alpha-D-mannopyranose
alpha-D-mannose; D-mannose; mannose
D-saccharide, alpha linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C7 H14 O6
194.182
n
methyl alpha-D-mannopyranoside
O1-METHYL-MANNOSE; methyl alpha-D-mannoside; methyl D-mannoside; methyl mannoside
D-saccharide
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
S
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
N
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
S
C
N
228
S
C
N
229
S
C
N
230
S
C
N
231
R
C
N
232
N
C
N
233
N
O
N
234
N
O
N
235
N
O
N
236
N
O
N
237
N
O
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
S
N
258
N
C
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
S
C
N
272
S
C
N
273
S
C
N
274
S
C
N
275
R
C
N
276
N
C
N
277
N
C
N
278
N
O
N
279
N
O
N
280
N
O
N
281
N
O
N
282
N
O
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
N
N
299
S
C
N
300
N
C
N
301
N
O
N
302
N
C
Y
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
N
309
N
O
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
N
326
N
C
N
327
N
C
N
328
N
O
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
N
N
339
S
C
N
340
N
C
N
341
N
O
N
342
N
C
N
343
N
O
N
344
N
O
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
R
C
N
357
N
O
N
358
N
C
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
N
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
N
383
N
O
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
N
N
397
S
C
N
398
N
C
N
399
N
O
N
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
N
407
N
O
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
N
N
421
S
C
N
422
N
C
N
423
N
O
N
424
N
C
N
425
N
C
N
426
N
C
N
427
N
O
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
doub
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
Y
297
N
doub
Y
298
N
sing
Y
299
N
sing
N
300
N
sing
Y
301
N
doub
N
302
N
sing
Y
303
N
doub
N
304
N
sing
Y
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
doub
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
doub
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
doub
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
Y
366
N
doub
Y
367
N
sing
Y
368
N
sing
N
369
N
sing
Y
370
N
doub
Y
371
N
sing
Y
372
N
sing
N
373
N
sing
Y
374
N
sing
Y
375
N
doub
N
376
N
sing
Y
377
N
doub
N
378
N
sing
Y
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
doub
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
Y
394
N
doub
Y
395
N
sing
Y
396
N
sing
N
397
N
sing
Y
398
N
doub
N
399
N
sing
Y
400
N
doub
N
401
N
sing
Y
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
doub
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
262
516
531
10.1006/jmbi.1996.0532
8893860
The mannose-specific bulb lectin from Galanthus nivalis (snowdrop) binds mono- and dimannosides at distinct sites. Structure analysis of refined complexes at 2.3 A and 3.0 A resolution.
1996
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
2
472
Structure of Mannose-Specific Snowdrop (Galanthus Nivalis) Lectin is Representative of a New Plant Lectin Family
1995
10.2210/pdb1niv/pdb
pdb_00001niv
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
IMAGE PLATE
1994-09-09
RIGAKU
M
x-ray
1
1.5418
1.0
1.5418
FROM GALANTHUS NIVALIS
12061.348
AGGLUTININ
2
nat
polymer
356.323
alpha-D-mannopyranose-(1-3)-methyl alpha-D-mannopyranoside
3
man
branched
194.182
methyl alpha-D-mannopyranoside
3
man
non-polymer
SNOWDROP LECTIN
no
no
DNILYSGETLSTGEFLNYGSFVFIMQEDCNLVLYDVDKPIWATNTGGLSRSCFLSMQTDGNLVVYNPSNKPIWASNTGGQ
NGNYVCILQKDRNVVIYGTDRWATGTHTG
DNILYSGETLSTGEFLNYGSFVFIMQEDCNLVLYDVDKPIWATNTGGLSRSCFLSMQTDGNLVVYNPSNKPIWASNTGGQ
NGNYVCILQKDRNVVIYGTDRWATGTHTG
A,C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
common snowdrop
THE SNOWDROP IS A REPRESENTATIVE OF THE PLANT FAMILY OF AMARYLLIDACEAE
Galanthus
sample
4670
BULB
Galanthus nivalis
4.55
68.
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_unobs_or_zero_occ_atoms
struct_asym
struct_conn
struct_conn_type
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Version format compliance
Advisory
Atomic model
Data collection
Derived calculations
Non-polymer description
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
1996-10-14
1
1
2008-03-24
1
2
2011-07-13
2
0
2020-07-29
2
1
2024-04-03
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.id
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.type
_pdbx_entity_nonpoly.comp_id
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_struct_asym.entity_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
MDM
2
n
B
MMA
1
MDM
2
n
B
MAN
2
MDM
3
n
D
MMA
1
MDM
3
n
D
MAN
2
MDM
6
n
E
MMA
1
MDM
6
n
E
MAN
2
DManpa
a-D-mannopyranose
a-D-Manp
Man
DManp[1Me]a
1-methyl-a-D-mannopyranose
o1-methyl-mannose
Y
BNL
1996-03-15
REL
oligosaccharide
DManpa1-3DManp[1Me]a1-OME
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/2,2,1/[a1122h-1a_1-5_1*OC][a1122h-1a_1-5]/1-2/a3-b1
2
PDB2Glycan
1.1.0
WURCS
[][methyl]{[(1+1)][a-D-Manp]{[(3+1)][a-D-Manp]{}}}
2
PDB-CARE
LINUCS
C1
O3
MAN
MMA
2
1
2
O1
HO3
sing
n
n
MMA
methyl alpha-D-mannopyranoside
GNA-ALPHA-MEMAN COMPLEX
Other
experimental model
MDM
1
3
MMA
MMA
110
A
MDM
4
3
MMA
MMA
110
C
MDM
5
3
MMA
MMA
111
C
ASP
1
n
1
ASP
1
A
ASN
2
n
2
ASN
2
A
ILE
3
n
3
ILE
3
A
LEU
4
n
4
LEU
4
A
TYR
5
n
5
TYR
5
A
SER
6
n
6
SER
6
A
GLY
7
n
7
GLY
7
A
GLU
8
n
8
GLU
8
A
THR
9
n
9
THR
9
A
LEU
10
n
10
LEU
10
A
SER
11
n
11
SER
11
A
THR
12
n
12
THR
12
A
GLY
13
n
13
GLY
13
A
GLU
14
n
14
GLU
14
A
PHE
15
n
15
PHE
15
A
LEU
16
n
16
LEU
16
A
ASN
17
n
17
ASN
17
A
TYR
18
n
18
TYR
18
A
GLY
19
n
19
GLY
19
A
SER
20
n
20
SER
20
A
PHE
21
n
21
PHE
21
A
VAL
22
n
22
VAL
22
A
PHE
23
n
23
PHE
23
A
ILE
24
n
24
ILE
24
A
MET
25
n
25
MET
25
A
GLN
26
n
26
GLN
26
A
GLU
27
n
27
GLU
27
A
ASP
28
n
28
ASP
28
A
CYS
29
n
29
CYS
29
A
ASN
30
n
30
ASN
30
A
LEU
31
n
31
LEU
31
A
VAL
32
n
32
VAL
32
A
LEU
33
n
33
LEU
33
A
TYR
34
n
34
TYR
34
A
ASP
35
n
35
ASP
35
A
VAL
36
n
36
VAL
36
A
ASP
37
n
37
ASP
37
A
LYS
38
n
38
LYS
38
A
PRO
39
n
39
PRO
39
A
ILE
40
n
40
ILE
40
A
TRP
41
n
41
TRP
41
A
ALA
42
n
42
ALA
42
A
THR
43
n
43
THR
43
A
ASN
44
n
44
ASN
44
A
THR
45
n
45
THR
45
A
GLY
46
n
46
GLY
46
A
GLY
47
n
47
GLY
47
A
LEU
48
n
48
LEU
48
A
SER
49
n
49
SER
49
A
ARG
50
n
50
ARG
50
A
SER
51
n
51
SER
51
A
CYS
52
n
52
CYS
52
A
PHE
53
n
53
PHE
53
A
LEU
54
n
54
LEU
54
A
SER
55
n
55
SER
55
A
MET
56
n
56
MET
56
A
GLN
57
n
57
GLN
57
A
THR
58
n
58
THR
58
A
ASP
59
n
59
ASP
59
A
GLY
60
n
60
GLY
60
A
ASN
61
n
61
ASN
61
A
LEU
62
n
62
LEU
62
A
VAL
63
n
63
VAL
63
A
VAL
64
n
64
VAL
64
A
TYR
65
n
65
TYR
65
A
ASN
66
n
66
ASN
66
A
PRO
67
n
67
PRO
67
A
SER
68
n
68
SER
68
A
ASN
69
n
69
ASN
69
A
LYS
70
n
70
LYS
70
A
PRO
71
n
71
PRO
71
A
ILE
72
n
72
ILE
72
A
TRP
73
n
73
TRP
73
A
ALA
74
n
74
ALA
74
A
SER
75
n
75
SER
75
A
ASN
76
n
76
ASN
76
A
THR
77
n
77
THR
77
A
GLY
78
n
78
GLY
78
A
GLY
79
n
79
GLY
79
A
GLN
80
n
80
GLN
80
A
ASN
81
n
81
ASN
81
A
GLY
82
n
82
GLY
82
A
ASN
83
n
83
ASN
83
A
TYR
84
n
84
TYR
84
A
VAL
85
n
85
VAL
85
A
CYS
86
n
86
CYS
86
A
ILE
87
n
87
ILE
87
A
LEU
88
n
88
LEU
88
A
GLN
89
n
89
GLN
89
A
LYS
90
n
90
LYS
90
A
ASP
91
n
91
ASP
91
A
ARG
92
n
92
ARG
92
A
ASN
93
n
93
ASN
93
A
VAL
94
n
94
VAL
94
A
VAL
95
n
95
VAL
95
A
ILE
96
n
96
ILE
96
A
TYR
97
n
97
TYR
97
A
GLY
98
n
98
GLY
98
A
THR
99
n
99
THR
99
A
ASP
100
n
100
ASP
100
A
ARG
101
n
101
ARG
101
A
TRP
102
n
102
TRP
102
A
ALA
103
n
103
ALA
103
A
THR
104
n
104
THR
104
A
GLY
105
n
105
GLY
105
A
THR
106
n
106
THR
106
A
HIS
107
n
107
HIS
107
A
THR
108
n
108
THR
108
A
n
109
109
A
ASP
1
n
1
ASP
1
C
ASN
2
n
2
ASN
2
C
ILE
3
n
3
ILE
3
C
LEU
4
n
4
LEU
4
C
TYR
5
n
5
TYR
5
C
SER
6
n
6
SER
6
C
GLY
7
n
7
GLY
7
C
GLU
8
n
8
GLU
8
C
THR
9
n
9
THR
9
C
LEU
10
n
10
LEU
10
C
SER
11
n
11
SER
11
C
THR
12
n
12
THR
12
C
GLY
13
n
13
GLY
13
C
GLU
14
n
14
GLU
14
C
PHE
15
n
15
PHE
15
C
LEU
16
n
16
LEU
16
C
ASN
17
n
17
ASN
17
C
TYR
18
n
18
TYR
18
C
GLY
19
n
19
GLY
19
C
SER
20
n
20
SER
20
C
PHE
21
n
21
PHE
21
C
VAL
22
n
22
VAL
22
C
PHE
23
n
23
PHE
23
C
ILE
24
n
24
ILE
24
C
MET
25
n
25
MET
25
C
GLN
26
n
26
GLN
26
C
GLU
27
n
27
GLU
27
C
ASP
28
n
28
ASP
28
C
CYS
29
n
29
CYS
29
C
ASN
30
n
30
ASN
30
C
LEU
31
n
31
LEU
31
C
VAL
32
n
32
VAL
32
C
LEU
33
n
33
LEU
33
C
TYR
34
n
34
TYR
34
C
ASP
35
n
35
ASP
35
C
VAL
36
n
36
VAL
36
C
ASP
37
n
37
ASP
37
C
LYS
38
n
38
LYS
38
C
PRO
39
n
39
PRO
39
C
ILE
40
n
40
ILE
40
C
TRP
41
n
41
TRP
41
C
ALA
42
n
42
ALA
42
C
THR
43
n
43
THR
43
C
ASN
44
n
44
ASN
44
C
THR
45
n
45
THR
45
C
GLY
46
n
46
GLY
46
C
GLY
47
n
47
GLY
47
C
LEU
48
n
48
LEU
48
C
SER
49
n
49
SER
49
C
ARG
50
n
50
ARG
50
C
SER
51
n
51
SER
51
C
CYS
52
n
52
CYS
52
C
PHE
53
n
53
PHE
53
C
LEU
54
n
54
LEU
54
C
SER
55
n
55
SER
55
C
MET
56
n
56
MET
56
C
GLN
57
n
57
GLN
57
C
THR
58
n
58
THR
58
C
ASP
59
n
59
ASP
59
C
GLY
60
n
60
GLY
60
C
ASN
61
n
61
ASN
61
C
LEU
62
n
62
LEU
62
C
VAL
63
n
63
VAL
63
C
VAL
64
n
64
VAL
64
C
TYR
65
n
65
TYR
65
C
ASN
66
n
66
ASN
66
C
PRO
67
n
67
PRO
67
C
SER
68
n
68
SER
68
C
ASN
69
n
69
ASN
69
C
LYS
70
n
70
LYS
70
C
PRO
71
n
71
PRO
71
C
ILE
72
n
72
ILE
72
C
TRP
73
n
73
TRP
73
C
ALA
74
n
74
ALA
74
C
SER
75
n
75
SER
75
C
ASN
76
n
76
ASN
76
C
THR
77
n
77
THR
77
C
GLY
78
n
78
GLY
78
C
GLY
79
n
79
GLY
79
C
GLN
80
n
80
GLN
80
C
ASN
81
n
81
ASN
81
C
GLY
82
n
82
GLY
82
C
ASN
83
n
83
ASN
83
C
TYR
84
n
84
TYR
84
C
VAL
85
n
85
VAL
85
C
CYS
86
n
86
CYS
86
C
ILE
87
n
87
ILE
87
C
LEU
88
n
88
LEU
88
C
GLN
89
n
89
GLN
89
C
LYS
90
n
90
LYS
90
C
ASP
91
n
91
ASP
91
C
ARG
92
n
92
ARG
92
C
ASN
93
n
93
ASN
93
C
VAL
94
n
94
VAL
94
C
VAL
95
n
95
VAL
95
C
ILE
96
n
96
ILE
96
C
TYR
97
n
97
TYR
97
C
GLY
98
n
98
GLY
98
C
THR
99
n
99
THR
99
C
ASP
100
n
100
ASP
100
C
ARG
101
n
101
ARG
101
C
TRP
102
n
102
TRP
102
C
ALA
103
n
103
ALA
103
C
THR
104
n
104
THR
104
C
GLY
105
n
105
GLY
105
C
THR
106
n
106
THR
106
C
HIS
107
n
107
HIS
107
C
THR
108
n
108
THR
108
C
n
109
109
C
author_defined_assembly
4
tetrameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
14_755
-x+2,-y+1/2,z
crystal symmetry operation
276.2980000000
69.0745000000
0.0000000000
A
O
LEU
4
A
O
LEU
4
A
N
CYS
86
A
N
CYS
86
A
O
VAL
85
A
O
VAL
85
A
N
TYR
97
A
N
TYR
97
A
O
GLU
8
A
O
GLU
8
A
N
MET
56
A
N
MET
56
A
O
PHE
53
A
O
PHE
53
A
N
TYR
65
A
N
TYR
65
A
O
VAL
64
A
O
VAL
64
A
N
TRP
73
A
N
TRP
73
A
O
LEU
16
A
O
LEU
16
A
N
PHE
23
A
N
PHE
23
A
O
VAL
22
A
O
VAL
22
A
N
TYR
34
A
N
TYR
34
A
O
LEU
33
A
O
LEU
33
A
N
TRP
41
A
N
TRP
41
C
O
LEU
4
B
O
LEU
4
C
N
CYS
86
B
N
CYS
86
C
O
VAL
85
B
O
VAL
85
C
N
TYR
97
B
N
TYR
97
C
O
GLU
8
B
O
GLU
8
C
N
MET
56
B
N
MET
56
C
O
PHE
53
B
O
PHE
53
C
N
TYR
65
B
N
TYR
65
C
O
VAL
64
B
O
VAL
64
C
N
TRP
73
B
N
TRP
73
C
O
LEU
16
B
O
LEU
16
C
N
PHE
23
B
N
PHE
23
C
O
VAL
22
B
O
VAL
22
C
N
TYR
34
B
N
TYR
34
C
O
LEU
33
B
O
LEU
33
C
N
TRP
41
B
N
TRP
41
1
A
GLY
109
A
GLY
109
1
Y
1
C
GLY
109
B
GLY
109
1
Y
1
A
VAL
36
74.48
-114.04
1
A
ALA
42
-170.09
147.02
1
A
SER
49
-168.08
-161.83
1
A
THR
77
-91.26
30.78
1
A
HIS
107
-39.73
136.84
1
C
VAL
36
74.74
-116.06
1
C
ALA
42
-170.62
149.13
1
C
SER
49
-169.57
-162.39
1
C
HIS
107
-39.91
136.69
32.3
THE MEAN B-FACTORS OF CHAINS A AND C ARE 22.5 AND 41.7
A**2, RESPECTIVELY. CHAIN C IS VERY FLEXIBLE DUE TO A
LACK OF CRYSTAL CONTACTS.
0.269
0.227
0.227
3.0
8.0
7779
7.
93.1
1
0.0
MOLECULAR REPLACEMENT
GNA-ALPHA-MEMAN COMPLEX
0.39
3.0
8.0
0
1799
111
0
1688
0.008
1.527
26.05
1.127
3.0
1NIV
8280
0.0
0.107
1
9.0
4.7
93.1
0.289
3.0
3.11
2.9
2.6
86.3
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
X-PLOR
3.1
MANNOSE-SPECIFIC AGGLUTININ (LECTIN) FROM SNOWDROP (GALANTHUS NIVALIS) BULBS IN COMPLEX WITH MANNOSE-ALPHA 1,3-METHYL-D-MANNOSE
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
disulf
2.026
A
CYS
29
A
SG
CYS
29
1_555
A
CYS
52
A
SG
CYS
52
1_555
disulf
2.027
C
CYS
29
B
SG
CYS
29
1_555
C
CYS
52
B
SG
CYS
52
1_555
covale
1.396
both
sing
B
MMA
1
C
O3
MMA
1_555
B
MAN
2
C
C1
MAN
1_555
covale
1.405
both
sing
D
MMA
1
D
O3
MMA
1_555
D
MAN
2
D
C1
MAN
1_555
covale
1.401
both
sing
E
MMA
1
E
O3
MMA
1_555
E
MAN
2
E
C1
MAN
1_555
LECTIN
LECTIN, MANNOSE-BINDING
A
GLY
98
A
GLY
98
1
A
THR
99
A
THR
99
-0.59
C
GLY
98
B
GLY
98
1
C
THR
99
B
THR
99
-1.15
given
0.662400
0.749200
-0.005100
0.749200
-0.662300
0.007200
0.002000
-0.008600
-1.000000
21.47680
-47.04250
256.26071
LEC_GALNI
UNP
1
1
P30617
MAKASLLILAAIFLGVITPSCLSDNILYSGETLSTGEFLNYGSFVFIMQEDCNLVLYDVDKPIWATNTGGLSRSCFLSMQ
TDGNLVVYNPSNKPIWASNTGGQNGNYVCILQKDRNVVIYGTDRWATGTHTGLVGIPASPPSEKYPTAGKIKLVTAK
24
132
1NIV
1
109
P30617
A
1
1
109
24
132
1NIV
1
109
P30617
C
1
1
109
3
4
4
3
4
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
3
A
ILE
3
A
TYR
5
A
TYR
5
A
VAL
85
A
VAL
85
A
LEU
88
A
LEU
88
A
VAL
94
A
VAL
94
A
TYR
97
A
TYR
97
A
GLU
8
A
GLU
8
A
LEU
10
A
LEU
10
A
PHE
53
A
PHE
53
A
MET
56
A
MET
56
A
LEU
62
A
LEU
62
A
TYR
65
A
TYR
65
A
PRO
71
A
PRO
71
A
ALA
74
A
ALA
74
A
PHE
15
A
PHE
15
A
TYR
18
A
TYR
18
A
PHE
21
A
PHE
21
A
MET
25
A
MET
25
A
LEU
31
A
LEU
31
A
ASP
35
A
ASP
35
A
LYS
38
A
LYS
38
A
ALA
42
A
ALA
42
C
ILE
3
B
ILE
3
C
TYR
5
B
TYR
5
C
VAL
85
B
VAL
85
C
LEU
88
B
LEU
88
C
VAL
94
B
VAL
94
C
TYR
97
B
TYR
97
C
GLU
8
B
GLU
8
C
LEU
10
B
LEU
10
C
PHE
53
B
PHE
53
C
MET
56
B
MET
56
C
LEU
62
B
LEU
62
C
TYR
65
B
TYR
65
C
PRO
71
B
PRO
71
C
ALA
74
B
ALA
74
C
PHE
15
B
PHE
15
C
TYR
18
B
TYR
18
C
PHE
21
B
PHE
21
C
MET
25
B
MET
25
C
LEU
31
B
LEU
31
C
ASP
35
B
ASP
35
C
LYS
38
B
LYS
38
C
ALA
42
B
ALA
42
199
I 21 3