0.006957
0.004016
0.000000
0.000000
0.008033
0.000000
0.000000
0.000000
0.006102
0.00000
0.00000
0.00000
Kamtekar, S.
Kennedy, W.D.
Wang, J.
Stathopoulos, C.
Soll, D.
Steitz, T.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
143.750
143.750
163.890
C13 H19 N7 O7 S2
449.463
5'-O-(N-(L-CYSTEINYL)-SULFAMOYL)ADENOSINE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
R
C
N
3
N
C
N
4
N
S
N
5
N
C
N
6
N
O
N
7
N
N
N
8
N
S
N
9
N
O
N
10
N
O
N
11
N
O
N
12
N
C
N
13
R
C
N
14
N
O
N
15
S
C
N
16
N
O
N
17
R
C
N
18
N
O
N
19
R
C
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
Y
24
N
C
N
25
N
N
Y
26
N
N
Y
27
N
C
Y
28
N
N
Y
29
N
C
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
N
N
50
S
C
N
51
N
C
N
52
N
O
N
53
N
C
N
54
N
O
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
N
N
63
S
C
N
64
N
C
N
65
N
O
N
66
N
C
N
67
N
C
N
68
N
C
N
69
N
N
N
70
N
C
N
71
N
N
N
72
N
N
N
73
N
O
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
N
N
107
S
C
N
108
N
C
N
109
N
O
N
110
N
C
N
111
N
C
N
112
N
O
N
113
N
O
N
114
N
O
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
N
N
123
R
C
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
S
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
N
N
137
S
C
N
138
N
C
N
139
N
O
N
140
N
C
N
141
N
C
N
142
N
C
N
143
N
O
N
144
N
N
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
N
N
157
S
C
N
158
N
C
N
159
N
O
N
160
N
C
N
161
N
C
N
162
N
C
N
163
N
O
N
164
N
O
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
N
N
176
N
C
N
177
N
C
N
178
N
O
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
N
C
Y
190
N
C
Y
191
N
N
Y
192
N
C
Y
193
N
C
Y
194
N
N
N
195
N
O
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
O
N
207
N
H
N
208
N
H
N
209
N
N
N
210
S
C
N
211
N
C
N
212
N
O
N
213
S
C
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
N
N
254
S
C
N
255
N
C
N
256
N
O
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
N
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
N
N
279
S
C
N
280
N
C
N
281
N
O
N
282
N
C
N
283
N
C
N
284
N
S
N
285
N
C
N
286
N
O
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
MG
N
299
N
N
N
300
S
C
N
301
N
C
N
302
N
O
N
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
N
327
N
C
N
328
N
C
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
N
C
N
344
N
O
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
R
C
N
358
N
O
N
359
N
C
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
N
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
N
408
N
O
N
409
N
O
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
N
N
422
S
C
N
423
N
C
N
424
N
O
N
425
N
C
N
426
N
C
N
427
N
C
N
428
N
O
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
doub
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
doub
N
16
N
doub
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
sing
Y
38
N
doub
N
39
N
sing
Y
40
N
sing
Y
41
N
doub
Y
42
N
sing
N
43
N
sing
Y
44
N
sing
N
45
N
sing
N
46
N
sing
Y
47
N
doub
Y
48
N
sing
N
49
N
sing
Y
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
doub
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
doub
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
Y
190
N
sing
Y
191
N
doub
Y
192
N
doub
N
193
N
sing
Y
194
N
sing
N
195
N
sing
Y
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
doub
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
doub
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
doub
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
Y
298
N
doub
Y
299
N
sing
Y
300
N
sing
N
301
N
sing
Y
302
N
doub
N
303
N
sing
Y
304
N
doub
N
305
N
sing
Y
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
Y
367
N
doub
Y
368
N
sing
Y
369
N
sing
N
370
N
sing
Y
371
N
doub
Y
372
N
sing
Y
373
N
sing
N
374
N
sing
Y
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
doub
N
379
N
sing
Y
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
Y
395
N
doub
Y
396
N
sing
Y
397
N
sing
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
doub
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
100
1673
1678
10.1073/pnas.0437911100
12578991
The structural basis of cysteine aminoacylation of tRNAPro by prolyl-tRNA synthetases
2003
10.2210/pdb1nj1/pdb
pdb_00001nj1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2002-04-03
SBC-2
2 double crystal monochromators
SINGLE WAVELENGTH
M
x-ray
1
0.97903
1.0
19-ID
APS
0.97903
SYNCHROTRON
APS BEAMLINE 19-ID
58170.258
Proline-tRNA Synthetase
6.1.1.15
N terminally His Tagged Enzyme
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
449.463
5'-O-(N-(L-CYSTEINYL)-SULFAMOYL)ADENOSINE
1
syn
non-polymer
18.015
water
30
nat
water
Prolyl-tRNA synthetase; Proline--tRNA ligase; ProRS
E.C.6.1.1.15
no
no
MGSSHHHHHHSSGLVPRGSHMQKPIKKDPNRYHGEKMTEFSEWFHNILEEAEIIDQRYPVKGMHVWMPHGFMIRKNTLKI
LRRILDRDHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRF
YQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRPPWDKFPGSEYTVA
FDTLMPDGKTLQIGTVHNLGQTFARTFEIKFETPEGDHEYVHQTCYGLSDRVIASVIAIHGDESGLCLPPDVAAHQVVIV
PIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKYYEWEMRGVPLRVEIGPRDLEKGAAVISRRDTGEKVTAD
LQGIEETLRELMKDILENLRTRAWERMESEIREAETLEEASRIVDEKRGIISFMWCGEEECGMDVEEKVRVDILGIQEEG
SGTCINCGREAPYRAYLARTY
MGSSHHHHHHSSGLVPRGSHMQKPIKKDPNRYHGEKMTEFSEWFHNILEEAEIIDQRYPVKGMHVWMPHGFMIRKNTLKI
LRRILDRDHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRF
YQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRPPWDKFPGSEYTVA
FDTLMPDGKTLQIGTVHNLGQTFARTFEIKFETPEGDHEYVHQTCYGLSDRVIASVIAIHGDESGLCLPPDVAAHQVVIV
PIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKYYEWEMRGVPLRVEIGPRDLEKGAAVISRRDTGEKVTAD
LQGIEETLRELMKDILENLRTRAWERMESEIREAETLEEASRIVDEKRGIISFMWCGEEECGMDVEEKVRVDILGIQEEG
SGTCINCGREAPYRAYLARTY
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Methanothermobacter
Escherichia
sample
Strain supplemented with additional plasmid encoding rare tRNAs
MTH611
145262
Methanothermobacter thermautotrophicus
562
Escherichia coli
BL21DE3 RecA-
PLASMID
pET15b
1
4.54
72.7
VAPOR DIFFUSION, HANGING DROP
7.5
Tris, Beta-Mercaptoethanol, MgCl2, NaCl, Cysteine sulfamoyl adenylate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-03-04
1
1
2008-04-29
1
2
2011-07-13
1
3
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2002-12-30
REL
REL
ZN
ZINC ION
MG
MAGNESIUM ION
5CA
5'-O-(N-(L-CYSTEINYL)-SULFAMOYL)ADENOSINE
HOH
water
ZN
513
2
ZN
ZN
513
A
MG
514
3
MG
MG
514
A
5CA
512
4
5CA
5CA
512
A
HOH
482
5
HOH
HOH
482
A
HOH
483
5
HOH
HOH
483
A
HOH
484
5
HOH
HOH
484
A
HOH
485
5
HOH
HOH
485
A
HOH
486
5
HOH
HOH
486
A
HOH
487
5
HOH
HOH
487
A
HOH
488
5
HOH
HOH
488
A
HOH
489
5
HOH
HOH
489
A
HOH
490
5
HOH
HOH
490
A
HOH
491
5
HOH
HOH
491
A
HOH
492
5
HOH
HOH
492
A
HOH
493
5
HOH
HOH
493
A
HOH
494
5
HOH
HOH
494
A
HOH
495
5
HOH
HOH
495
A
HOH
496
5
HOH
HOH
496
A
HOH
497
5
HOH
HOH
497
A
HOH
498
5
HOH
HOH
498
A
HOH
499
5
HOH
HOH
499
A
HOH
500
5
HOH
HOH
500
A
HOH
501
5
HOH
HOH
501
A
HOH
502
5
HOH
HOH
502
A
HOH
503
5
HOH
HOH
503
A
HOH
504
5
HOH
HOH
504
A
HOH
505
5
HOH
HOH
505
A
HOH
506
5
HOH
HOH
506
A
HOH
507
5
HOH
HOH
507
A
HOH
508
5
HOH
HOH
508
A
HOH
509
5
HOH
HOH
509
A
HOH
510
5
HOH
HOH
510
A
HOH
511
5
HOH
HOH
511
A
n
1
-19
A
n
2
-18
A
n
3
-17
A
n
4
-16
A
n
5
-15
A
n
6
-14
A
n
7
-13
A
n
8
-12
A
n
9
-11
A
n
10
-10
A
n
11
-9
A
n
12
-8
A
n
13
-7
A
n
14
-6
A
n
15
-5
A
n
16
-4
A
n
17
-3
A
n
18
-2
A
n
19
-1
A
n
20
0
A
n
21
1
A
n
22
2
A
n
23
3
A
n
24
4
A
n
25
5
A
n
26
6
A
n
27
7
A
n
28
8
A
n
29
9
A
n
30
10
A
n
31
11
A
n
32
12
A
n
33
13
A
n
34
14
A
n
35
15
A
n
36
16
A
n
37
17
A
n
38
18
A
GLU
19
n
39
GLU
19
A
PHE
20
n
40
PHE
20
A
SER
21
n
41
SER
21
A
GLU
22
n
42
GLU
22
A
TRP
23
n
43
TRP
23
A
PHE
24
n
44
PHE
24
A
HIS
25
n
45
HIS
25
A
ASN
26
n
46
ASN
26
A
ILE
27
n
47
ILE
27
A
LEU
28
n
48
LEU
28
A
GLU
29
n
49
GLU
29
A
GLU
30
n
50
GLU
30
A
ALA
31
n
51
ALA
31
A
GLU
32
n
52
GLU
32
A
ILE
33
n
53
ILE
33
A
ILE
34
n
54
ILE
34
A
ASP
35
n
55
ASP
35
A
GLN
36
n
56
GLN
36
A
ARG
37
n
57
ARG
37
A
TYR
38
n
58
TYR
38
A
PRO
39
n
59
PRO
39
A
VAL
40
n
60
VAL
40
A
LYS
41
n
61
LYS
41
A
GLY
42
n
62
GLY
42
A
MET
43
n
63
MET
43
A
HIS
44
n
64
HIS
44
A
VAL
45
n
65
VAL
45
A
TRP
46
n
66
TRP
46
A
MET
47
n
67
MET
47
A
PRO
48
n
68
PRO
48
A
HIS
49
n
69
HIS
49
A
GLY
50
n
70
GLY
50
A
PHE
51
n
71
PHE
51
A
MET
52
n
72
MET
52
A
ILE
53
n
73
ILE
53
A
ARG
54
n
74
ARG
54
A
LYS
55
n
75
LYS
55
A
ASN
56
n
76
ASN
56
A
THR
57
n
77
THR
57
A
LEU
58
n
78
LEU
58
A
LYS
59
n
79
LYS
59
A
ILE
60
n
80
ILE
60
A
LEU
61
n
81
LEU
61
A
ARG
62
n
82
ARG
62
A
ARG
63
n
83
ARG
63
A
ILE
64
n
84
ILE
64
A
LEU
65
n
85
LEU
65
A
ASP
66
n
86
ASP
66
A
ARG
67
n
87
ARG
67
A
ASP
68
n
88
ASP
68
A
HIS
69
n
89
HIS
69
A
GLU
70
n
90
GLU
70
A
GLU
71
n
91
GLU
71
A
VAL
72
n
92
VAL
72
A
LEU
73
n
93
LEU
73
A
PHE
74
n
94
PHE
74
A
PRO
75
n
95
PRO
75
A
LEU
76
n
96
LEU
76
A
LEU
77
n
97
LEU
77
A
VAL
78
n
98
VAL
78
A
PRO
79
n
99
PRO
79
A
GLU
80
n
100
GLU
80
A
ASP
81
n
101
ASP
81
A
GLU
82
n
102
GLU
82
A
LEU
83
n
103
LEU
83
A
ALA
84
n
104
ALA
84
A
LYS
85
n
105
LYS
85
A
GLU
86
n
106
GLU
86
A
ALA
87
n
107
ALA
87
A
ILE
88
n
108
ILE
88
A
HIS
89
n
109
HIS
89
A
VAL
90
n
110
VAL
90
A
LYS
91
n
111
LYS
91
A
GLY
92
n
112
GLY
92
A
PHE
93
n
113
PHE
93
A
GLU
94
n
114
GLU
94
A
ASP
95
n
115
ASP
95
A
GLU
96
n
116
GLU
96
A
VAL
97
n
117
VAL
97
A
TYR
98
n
118
TYR
98
A
TRP
99
n
119
TRP
99
A
VAL
100
n
120
VAL
100
A
THR
101
n
121
THR
101
A
HIS
102
n
122
HIS
102
A
GLY
103
n
123
GLY
103
A
GLY
104
n
124
GLY
104
A
LEU
105
n
125
LEU
105
A
SER
106
n
126
SER
106
A
LYS
107
n
127
LYS
107
A
LEU
108
n
128
LEU
108
A
GLN
109
n
129
GLN
109
A
ARG
110
n
130
ARG
110
A
LYS
111
n
131
LYS
111
A
LEU
112
n
132
LEU
112
A
ALA
113
n
133
ALA
113
A
LEU
114
n
134
LEU
114
A
ARG
115
n
135
ARG
115
A
PRO
116
n
136
PRO
116
A
THR
117
n
137
THR
117
A
SER
118
n
138
SER
118
A
GLU
119
n
139
GLU
119
A
THR
120
n
140
THR
120
A
VAL
121
n
141
VAL
121
A
MET
122
n
142
MET
122
A
TYR
123
n
143
TYR
123
A
PRO
124
n
144
PRO
124
A
MET
125
n
145
MET
125
A
PHE
126
n
146
PHE
126
A
ALA
127
n
147
ALA
127
A
LEU
128
n
148
LEU
128
A
TRP
129
n
149
TRP
129
A
VAL
130
n
150
VAL
130
A
ARG
131
n
151
ARG
131
A
SER
132
n
152
SER
132
A
HIS
133
n
153
HIS
133
A
THR
134
n
154
THR
134
A
ASP
135
n
155
ASP
135
A
LEU
136
n
156
LEU
136
A
PRO
137
n
157
PRO
137
A
MET
138
n
158
MET
138
A
ARG
139
n
159
ARG
139
A
PHE
140
n
160
PHE
140
A
TYR
141
n
161
TYR
141
A
GLN
142
n
162
GLN
142
A
VAL
143
n
163
VAL
143
A
VAL
144
n
164
VAL
144
A
ASN
145
n
165
ASN
145
A
THR
146
n
166
THR
146
A
PHE
147
n
167
PHE
147
A
ARG
148
n
168
ARG
148
A
TYR
149
n
169
TYR
149
A
GLU
150
n
170
GLU
150
A
THR
151
n
171
THR
151
A
LYS
152
n
172
LYS
152
A
HIS
153
n
173
HIS
153
A
THR
154
n
174
THR
154
A
ARG
155
n
175
ARG
155
A
PRO
156
n
176
PRO
156
A
LEU
157
n
177
LEU
157
A
ILE
158
n
178
ILE
158
A
ARG
159
n
179
ARG
159
A
VAL
160
n
180
VAL
160
A
ARG
161
n
181
ARG
161
A
GLU
162
n
182
GLU
162
A
ILE
163
n
183
ILE
163
A
THR
164
n
184
THR
164
A
THR
165
n
185
THR
165
A
PHE
166
n
186
PHE
166
A
LYS
167
n
187
LYS
167
A
GLU
168
n
188
GLU
168
A
ALA
169
n
189
ALA
169
A
HIS
170
n
190
HIS
170
A
THR
171
n
191
THR
171
A
ILE
172
n
192
ILE
172
A
HIS
173
n
193
HIS
173
A
ALA
174
n
194
ALA
174
A
THR
175
n
195
THR
175
A
ALA
176
n
196
ALA
176
A
SER
177
n
197
SER
177
A
GLU
178
n
198
GLU
178
A
ALA
179
n
199
ALA
179
A
GLU
180
n
200
GLU
180
A
GLU
181
n
201
GLU
181
A
GLN
182
n
202
GLN
182
A
VAL
183
n
203
VAL
183
A
GLU
184
n
204
GLU
184
A
ARG
185
n
205
ARG
185
A
ALA
186
n
206
ALA
186
A
VAL
187
n
207
VAL
187
A
GLU
188
n
208
GLU
188
A
ILE
189
n
209
ILE
189
A
TYR
190
n
210
TYR
190
A
LYS
191
n
211
LYS
191
A
GLU
192
n
212
GLU
192
A
PHE
193
n
213
PHE
193
A
PHE
194
n
214
PHE
194
A
ASN
195
n
215
ASN
195
A
SER
196
n
216
SER
196
A
LEU
197
n
217
LEU
197
A
GLY
198
n
218
GLY
198
A
ILE
199
n
219
ILE
199
A
PRO
200
n
220
PRO
200
A
TYR
201
n
221
TYR
201
A
LEU
202
n
222
LEU
202
A
ILE
203
n
223
ILE
203
A
THR
204
n
224
THR
204
A
ARG
205
n
225
ARG
205
A
ARG
206
n
226
ARG
206
A
PRO
207
n
227
PRO
207
A
PRO
208
n
228
PRO
208
A
TRP
209
n
229
TRP
209
A
ASP
210
n
230
ASP
210
A
LYS
211
n
231
LYS
211
A
PHE
212
n
232
PHE
212
A
PRO
213
n
233
PRO
213
A
GLY
214
n
234
GLY
214
A
SER
215
n
235
SER
215
A
GLU
216
n
236
GLU
216
A
TYR
217
n
237
TYR
217
A
THR
218
n
238
THR
218
A
VAL
219
n
239
VAL
219
A
ALA
220
n
240
ALA
220
A
PHE
221
n
241
PHE
221
A
ASP
222
n
242
ASP
222
A
THR
223
n
243
THR
223
A
LEU
224
n
244
LEU
224
A
MET
225
n
245
MET
225
A
PRO
226
n
246
PRO
226
A
ASP
227
n
247
ASP
227
A
GLY
228
n
248
GLY
228
A
LYS
229
n
249
LYS
229
A
THR
230
n
250
THR
230
A
LEU
231
n
251
LEU
231
A
GLN
232
n
252
GLN
232
A
ILE
233
n
253
ILE
233
A
GLY
234
n
254
GLY
234
A
THR
235
n
255
THR
235
A
VAL
236
n
256
VAL
236
A
HIS
237
n
257
HIS
237
A
ASN
238
n
258
ASN
238
A
LEU
239
n
259
LEU
239
A
GLY
240
n
260
GLY
240
A
GLN
241
n
261
GLN
241
A
THR
242
n
262
THR
242
A
PHE
243
n
263
PHE
243
A
ALA
244
n
264
ALA
244
A
ARG
245
n
265
ARG
245
A
THR
246
n
266
THR
246
A
PHE
247
n
267
PHE
247
A
GLU
248
n
268
GLU
248
A
ILE
249
n
269
ILE
249
A
LYS
250
n
270
LYS
250
A
PHE
251
n
271
PHE
251
A
GLU
252
n
272
GLU
252
A
THR
253
n
273
THR
253
A
PRO
254
n
274
PRO
254
A
GLU
255
n
275
GLU
255
A
GLY
256
n
276
GLY
256
A
ASP
257
n
277
ASP
257
A
HIS
258
n
278
HIS
258
A
GLU
259
n
279
GLU
259
A
TYR
260
n
280
TYR
260
A
VAL
261
n
281
VAL
261
A
HIS
262
n
282
HIS
262
A
GLN
263
n
283
GLN
263
A
THR
264
n
284
THR
264
A
CYS
265
n
285
CYS
265
A
TYR
266
n
286
TYR
266
A
GLY
267
n
287
GLY
267
A
LEU
268
n
288
LEU
268
A
SER
269
n
289
SER
269
A
ASP
270
n
290
ASP
270
A
ARG
271
n
291
ARG
271
A
VAL
272
n
292
VAL
272
A
ILE
273
n
293
ILE
273
A
ALA
274
n
294
ALA
274
A
SER
275
n
295
SER
275
A
VAL
276
n
296
VAL
276
A
ILE
277
n
297
ILE
277
A
ALA
278
n
298
ALA
278
A
ILE
279
n
299
ILE
279
A
HIS
280
n
300
HIS
280
A
GLY
281
n
301
GLY
281
A
ASP
282
n
302
ASP
282
A
GLU
283
n
303
GLU
283
A
SER
284
n
304
SER
284
A
GLY
285
n
305
GLY
285
A
LEU
286
n
306
LEU
286
A
CYS
287
n
307
CYS
287
A
LEU
288
n
308
LEU
288
A
PRO
289
n
309
PRO
289
A
PRO
290
n
310
PRO
290
A
ASP
291
n
311
ASP
291
A
VAL
292
n
312
VAL
292
A
ALA
293
n
313
ALA
293
A
ALA
294
n
314
ALA
294
A
HIS
295
n
315
HIS
295
A
GLN
296
n
316
GLN
296
A
VAL
297
n
317
VAL
297
A
VAL
298
n
318
VAL
298
A
ILE
299
n
319
ILE
299
A
VAL
300
n
320
VAL
300
A
PRO
301
n
321
PRO
301
A
ILE
302
n
322
ILE
302
A
ILE
303
n
323
ILE
303
A
PHE
304
n
324
PHE
304
A
LYS
305
n
325
LYS
305
A
LYS
306
n
326
LYS
306
A
ALA
307
n
327
ALA
307
A
ALA
308
n
328
ALA
308
A
GLU
309
n
329
GLU
309
A
GLU
310
n
330
GLU
310
A
VAL
311
n
331
VAL
311
A
MET
312
n
332
MET
312
A
GLU
313
n
333
GLU
313
A
ALA
314
n
334
ALA
314
A
CYS
315
n
335
CYS
315
A
ARG
316
n
336
ARG
316
A
GLU
317
n
337
GLU
317
A
LEU
318
n
338
LEU
318
A
ARG
319
n
339
ARG
319
A
SER
320
n
340
SER
320
A
ARG
321
n
341
ARG
321
A
LEU
322
n
342
LEU
322
A
GLU
323
n
343
GLU
323
A
ALA
324
n
344
ALA
324
A
ALA
325
n
345
ALA
325
A
GLY
326
n
346
GLY
326
A
PHE
327
n
347
PHE
327
A
ARG
328
n
348
ARG
328
A
VAL
329
n
349
VAL
329
A
HIS
330
n
350
HIS
330
A
LEU
331
n
351
LEU
331
A
ASP
332
n
352
ASP
332
A
ASP
333
n
353
ASP
333
A
ARG
334
n
354
ARG
334
A
ASP
335
n
355
ASP
335
A
ILE
336
n
356
ILE
336
A
ARG
337
n
357
ARG
337
A
ALA
338
n
358
ALA
338
A
GLY
339
n
359
GLY
339
A
ARG
340
n
360
ARG
340
A
LYS
341
n
361
LYS
341
A
TYR
342
n
362
TYR
342
A
TYR
343
n
363
TYR
343
A
GLU
344
n
364
GLU
344
A
TRP
345
n
365
TRP
345
A
GLU
346
n
366
GLU
346
A
MET
347
n
367
MET
347
A
ARG
348
n
368
ARG
348
A
GLY
349
n
369
GLY
349
A
VAL
350
n
370
VAL
350
A
PRO
351
n
371
PRO
351
A
LEU
352
n
372
LEU
352
A
ARG
353
n
373
ARG
353
A
VAL
354
n
374
VAL
354
A
GLU
355
n
375
GLU
355
A
ILE
356
n
376
ILE
356
A
GLY
357
n
377
GLY
357
A
PRO
358
n
378
PRO
358
A
ARG
359
n
379
ARG
359
A
ASP
360
n
380
ASP
360
A
LEU
361
n
381
LEU
361
A
GLU
362
n
382
GLU
362
A
LYS
363
n
383
LYS
363
A
GLY
364
n
384
GLY
364
A
ALA
365
n
385
ALA
365
A
ALA
366
n
386
ALA
366
A
VAL
367
n
387
VAL
367
A
ILE
368
n
388
ILE
368
A
SER
369
n
389
SER
369
A
ARG
370
n
390
ARG
370
A
ARG
371
n
391
ARG
371
A
ASP
372
n
392
ASP
372
A
THR
373
n
393
THR
373
A
GLY
374
n
394
GLY
374
A
GLU
375
n
395
GLU
375
A
LYS
376
n
396
LYS
376
A
VAL
377
n
397
VAL
377
A
THR
378
n
398
THR
378
A
ALA
379
n
399
ALA
379
A
ASP
380
n
400
ASP
380
A
LEU
381
n
401
LEU
381
A
GLN
382
n
402
GLN
382
A
GLY
383
n
403
GLY
383
A
ILE
384
n
404
ILE
384
A
GLU
385
n
405
GLU
385
A
GLU
386
n
406
GLU
386
A
THR
387
n
407
THR
387
A
LEU
388
n
408
LEU
388
A
ARG
389
n
409
ARG
389
A
GLU
390
n
410
GLU
390
A
LEU
391
n
411
LEU
391
A
MET
392
n
412
MET
392
A
LYS
393
n
413
LYS
393
A
ASP
394
n
414
ASP
394
A
ILE
395
n
415
ILE
395
A
LEU
396
n
416
LEU
396
A
GLU
397
n
417
GLU
397
A
ASN
398
n
418
ASN
398
A
LEU
399
n
419
LEU
399
A
ARG
400
n
420
ARG
400
A
THR
401
n
421
THR
401
A
ARG
402
n
422
ARG
402
A
ALA
403
n
423
ALA
403
A
TRP
404
n
424
TRP
404
A
GLU
405
n
425
GLU
405
A
ARG
406
n
426
ARG
406
A
MET
407
n
427
MET
407
A
GLU
408
n
428
GLU
408
A
SER
409
n
429
SER
409
A
GLU
410
n
430
GLU
410
A
ILE
411
n
431
ILE
411
A
ARG
412
n
432
ARG
412
A
GLU
413
n
433
GLU
413
A
ALA
414
n
434
ALA
414
A
GLU
415
n
435
GLU
415
A
THR
416
n
436
THR
416
A
LEU
417
n
437
LEU
417
A
GLU
418
n
438
GLU
418
A
GLU
419
n
439
GLU
419
A
ALA
420
n
440
ALA
420
A
SER
421
n
441
SER
421
A
ARG
422
n
442
ARG
422
A
ILE
423
n
443
ILE
423
A
VAL
424
n
444
VAL
424
A
ASP
425
n
445
ASP
425
A
GLU
426
n
446
GLU
426
A
LYS
427
n
447
LYS
427
A
ARG
428
n
448
ARG
428
A
GLY
429
n
449
GLY
429
A
ILE
430
n
450
ILE
430
A
ILE
431
n
451
ILE
431
A
SER
432
n
452
SER
432
A
PHE
433
n
453
PHE
433
A
MET
434
n
454
MET
434
A
TRP
435
n
455
TRP
435
A
CYS
436
n
456
CYS
436
A
GLY
437
n
457
GLY
437
A
GLU
438
n
458
GLU
438
A
GLU
439
n
459
GLU
439
A
GLU
440
n
460
GLU
440
A
CYS
441
n
461
CYS
441
A
GLY
442
n
462
GLY
442
A
MET
443
n
463
MET
443
A
ASP
444
n
464
ASP
444
A
VAL
445
n
465
VAL
445
A
GLU
446
n
466
GLU
446
A
GLU
447
n
467
GLU
447
A
LYS
448
n
468
LYS
448
A
VAL
449
n
469
VAL
449
A
ARG
450
n
470
ARG
450
A
VAL
451
n
471
VAL
451
A
ASP
452
n
472
ASP
452
A
ILE
453
n
473
ILE
453
A
LEU
454
n
474
LEU
454
A
GLY
455
n
475
GLY
455
A
ILE
456
n
476
ILE
456
A
GLN
457
n
477
GLN
457
A
GLU
458
n
478
GLU
458
A
GLU
459
n
479
GLU
459
A
GLY
460
n
480
GLY
460
A
SER
461
n
481
SER
461
A
GLY
462
n
482
GLY
462
A
THR
463
n
483
THR
463
A
CYS
464
n
484
CYS
464
A
ILE
465
n
485
ILE
465
A
ASN
466
n
486
ASN
466
A
CYS
467
n
487
CYS
467
A
GLY
468
n
488
GLY
468
A
ARG
469
n
489
ARG
469
A
GLU
470
n
490
GLU
470
A
ALA
471
n
491
ALA
471
A
PRO
472
n
492
PRO
472
A
TYR
473
n
493
TYR
473
A
ARG
474
n
494
ARG
474
A
ALA
475
n
495
ALA
475
A
TYR
476
n
496
TYR
476
A
LEU
477
n
497
LEU
477
A
ALA
478
n
498
ALA
478
A
ARG
479
n
499
ARG
479
A
THR
480
n
500
THR
480
A
TYR
481
n
501
TYR
481
A
author_and_software_defined_assembly
PISA,PQS
2
dimeric
6400
-55
38160
A
CYS
436
A
SG
CYS
456
1_555
A
ZN
513
B
ZN
ZN
1_555
A
CYS
441
A
SG
CYS
461
1_555
113.6
A
CYS
436
A
SG
CYS
456
1_555
A
ZN
513
B
ZN
ZN
1_555
A
CYS
464
A
SG
CYS
484
1_555
133.8
A
CYS
441
A
SG
CYS
461
1_555
A
ZN
513
B
ZN
ZN
1_555
A
CYS
464
A
SG
CYS
484
1_555
94.1
A
CYS
436
A
SG
CYS
456
1_555
A
ZN
513
B
ZN
ZN
1_555
A
CYS
467
A
SG
CYS
487
1_555
100.8
A
CYS
441
A
SG
CYS
461
1_555
A
ZN
513
B
ZN
ZN
1_555
A
CYS
467
A
SG
CYS
487
1_555
112.8
A
CYS
464
A
SG
CYS
484
1_555
A
ZN
513
B
ZN
ZN
1_555
A
CYS
467
A
SG
CYS
487
1_555
101.2
A
GLU
446
A
OE2
GLU
466
1_555
A
MG
514
C
MG
MG
1_555
A
ASP
452
A
OD2
ASP
472
1_555
86.9
A
GLU
446
A
OE2
GLU
466
1_555
A
MG
514
C
MG
MG
1_555
A
HOH
492
E
O
HOH
1_555
77.7
A
ASP
452
A
OD2
ASP
472
1_555
A
MG
514
C
MG
MG
1_555
A
HOH
492
E
O
HOH
1_555
159.7
A
GLU
446
A
OE2
GLU
466
1_555
A
MG
514
C
MG
MG
1_555
A
HOH
493
E
O
HOH
1_555
60.6
A
ASP
452
A
OD2
ASP
472
1_555
A
MG
514
C
MG
MG
1_555
A
HOH
493
E
O
HOH
1_555
96.9
A
HOH
492
E
O
HOH
1_555
A
MG
514
C
MG
MG
1_555
A
HOH
493
E
O
HOH
1_555
87.1
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_554
y,x,-z-1/3
crystal symmetry operation
0.0000000000
0.0000000000
-54.6300000000
A
N
ASP
35
A
N
ASP
55
A
O
VAL
45
A
O
VAL
65
A
N
GLU
70
A
N
GLU
90
A
O
ARG
139
A
O
ARG
159
A
N
PHE
140
A
N
PHE
160
A
O
HIS
170
A
O
HIS
190
A
N
HIS
173
A
N
HIS
193
A
O
HIS
262
A
O
HIS
282
A
O
CYS
265
A
O
CYS
285
A
N
HIS
237
A
N
HIS
257
A
O
LEU
231
A
O
LEU
251
A
N
THR
223
A
N
THR
243
A
O
ASP
222
A
O
ASP
242
A
N
LEU
202
A
N
LEU
222
A
N
VAL
78
A
N
VAL
98
A
O
ALA
113
A
O
ALA
133
A
O
LEU
112
A
O
LEU
132
A
N
VAL
100
A
N
VAL
120
A
N
PHE
251
A
N
PHE
271
A
O
GLU
259
A
O
GLU
279
A
N
LEU
286
A
N
LEU
306
A
O
GLY
349
A
O
GLY
369
A
O
HIS
330
A
O
HIS
350
A
N
VAL
297
A
N
VAL
317
A
N
VAL
300
A
N
VAL
320
A
O
VAL
354
A
O
VAL
374
A
N
GLU
355
A
N
GLU
375
A
O
VAL
367
A
O
VAL
387
A
N
ALA
366
A
N
ALA
386
A
O
ALA
379
A
O
ALA
399
A
N
ARG
412
A
N
ARG
432
A
O
ILE
430
A
O
ILE
450
A
N
PHE
433
A
N
PHE
453
A
O
ALA
475
A
O
ALA
495
A
O
ALA
478
A
O
ALA
498
A
N
ASP
452
A
N
ASP
472
1
A
MET
-19
A
MET
1
1
Y
1
A
GLY
-18
A
GLY
2
1
Y
1
A
SER
-17
A
SER
3
1
Y
1
A
SER
-16
A
SER
4
1
Y
1
A
HIS
-15
A
HIS
5
1
Y
1
A
HIS
-14
A
HIS
6
1
Y
1
A
HIS
-13
A
HIS
7
1
Y
1
A
HIS
-12
A
HIS
8
1
Y
1
A
HIS
-11
A
HIS
9
1
Y
1
A
HIS
-10
A
HIS
10
1
Y
1
A
SER
-9
A
SER
11
1
Y
1
A
SER
-8
A
SER
12
1
Y
1
A
GLY
-7
A
GLY
13
1
Y
1
A
LEU
-6
A
LEU
14
1
Y
1
A
VAL
-5
A
VAL
15
1
Y
1
A
PRO
-4
A
PRO
16
1
Y
1
A
ARG
-3
A
ARG
17
1
Y
1
A
GLY
-2
A
GLY
18
1
Y
1
A
SER
-1
A
SER
19
1
Y
1
A
HIS
0
A
HIS
20
1
Y
1
A
MET
1
A
MET
21
1
Y
1
A
GLN
2
A
GLN
22
1
Y
1
A
LYS
3
A
LYS
23
1
Y
1
A
PRO
4
A
PRO
24
1
Y
1
A
ILE
5
A
ILE
25
1
Y
1
A
LYS
6
A
LYS
26
1
Y
1
A
LYS
7
A
LYS
27
1
Y
1
A
ASP
8
A
ASP
28
1
Y
1
A
PRO
9
A
PRO
29
1
Y
1
A
ASN
10
A
ASN
30
1
Y
1
A
ARG
11
A
ARG
31
1
Y
1
A
TYR
12
A
TYR
32
1
Y
1
A
HIS
13
A
HIS
33
1
Y
1
A
GLY
14
A
GLY
34
1
Y
1
A
GLU
15
A
GLU
35
1
Y
1
A
LYS
16
A
LYS
36
1
Y
1
A
MET
17
A
MET
37
1
Y
1
A
THR
18
A
THR
38
1
Y
1
A
ARG
37
-72.84
27.58
1
A
PRO
39
-54.53
-4.33
1
A
LEU
73
-161.34
107.64
1
A
ALA
87
-65.77
-74.31
1
A
GLU
94
-35.71
-70.93
1
A
ARG
110
-164.23
110.16
1
A
ARG
131
-136.92
-60.69
1
A
GLU
150
-126.22
-155.55
1
A
THR
151
-24.93
137.13
1
A
LEU
157
58.68
-4.81
1
A
PRO
213
-44.53
106.63
1
A
PRO
226
-50.33
-7.90
1
A
LYS
306
-160.68
89.59
1
A
ASP
335
-100.21
68.37
1
A
ARG
359
-49.55
-85.12
1
A
ASP
360
-39.71
-38.44
1
A
GLU
362
-71.63
28.91
1
A
LYS
363
-146.16
-7.82
1
A
ARG
428
60.76
-143.69
1
A
GLU
439
-48.31
-70.51
1
A
GLU
459
-165.67
-166.96
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
ION.PARAM
ION.TOP
FI
FI
72.9
0.84
5.99
0.00
0.84
0.00
-1.68
0.257
0.005
0.225
0.225
0.225
2.55
50.0
2957
33186
29801
9.9
89.8
RANDOM
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
Methanocaldococcus janaschii Proline tRNA Synthetase
Engh & Huber
FLAT MODEL
30.1078
0.311281
0.45
5.0
0.49
2.55
50.0
30
3843
31
0
3782
0.007
1.3
22.6
0.94
1.52
1.50
2.66
2.00
2.34
2.00
3.79
2.50
0.43
0.022
0.377
2.71
393
3705
6
9.6
75.6
57.1
2.55
50.0
1NJ1
33228
33200
-3
0.061
1
48.9
14.8
99.9
2.55
2.64
2.6
1
100
data collection
HKL-2000
data scaling
SCALEPACK
phasing
AMoRE
refinement
CNS
1.0
data reduction
HKL-2000
Crystal structure of Prolyl-tRNA Synthetase from Methanothermobacter thermautotrophicus bound to cysteine sulfamoyl adenylate
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
The biological assembly is a dimer constructed by a twofold rotation.
A
GLU
19
A
GLU
39
HELX_P
A
ALA
31
A
ALA
51
1
1
13
A
MET
47
A
MET
67
HELX_P
A
ASP
66
A
ASP
86
1
2
20
A
GLU
80
A
GLU
100
HELX_P
A
ALA
84
A
ALA
104
1
3
5
A
GLU
86
A
GLU
106
HELX_P
A
PHE
93
A
PHE
113
1
4
8
A
SER
118
A
SER
138
HELX_P
A
VAL
130
A
VAL
150
1
5
13
A
THR
175
A
THR
195
HELX_P
A
LEU
197
A
LEU
217
1
6
23
A
GLN
241
A
GLN
261
HELX_P
A
GLU
248
A
GLU
268
1
7
8
A
ASP
270
A
ASP
290
HELX_P
A
HIS
280
A
HIS
300
1
8
11
A
ALA
307
A
ALA
327
HELX_P
A
ALA
324
A
ALA
344
1
9
18
A
ARG
337
A
ARG
357
HELX_P
A
MET
347
A
MET
367
1
10
11
A
GLY
357
A
GLY
377
HELX_P
A
GLU
362
A
GLU
382
1
11
6
A
GLY
383
A
GLY
403
HELX_P
A
SER
409
A
SER
429
1
12
27
A
THR
416
A
THR
436
HELX_P
A
ARG
428
A
ARG
448
1
13
13
A
GLU
438
A
GLU
458
HELX_P
A
ARG
450
A
ARG
470
1
14
13
metalc
2.395
A
CYS
436
A
SG
CYS
456
1_555
A
ZN
513
B
ZN
ZN
1_555
metalc
2.326
A
CYS
441
A
SG
CYS
461
1_555
A
ZN
513
B
ZN
ZN
1_555
metalc
2.659
A
GLU
446
A
OE2
GLU
466
1_555
A
MG
514
C
MG
MG
1_555
metalc
2.399
A
ASP
452
A
OD2
ASP
472
1_555
A
MG
514
C
MG
MG
1_555
metalc
2.249
A
CYS
464
A
SG
CYS
484
1_555
A
ZN
513
B
ZN
ZN
1_555
metalc
2.562
A
CYS
467
A
SG
CYS
487
1_555
A
ZN
513
B
ZN
ZN
1_555
metalc
2.485
A
HOH
492
E
O
HOH
1_555
A
MG
514
C
MG
MG
1_555
metalc
2.570
A
HOH
493
E
O
HOH
1_555
A
MG
514
C
MG
MG
1_555
LIGASE
Protein-Aminoacyladenylate Complex Class-II tRNA synthetase, LIGASE
A
LEU
136
A
LEU
156
1
A
PRO
137
A
PRO
157
-0.02
SYP_METTH
UNP
1
1
O26708
MQKPIKKDPNRYHGEKMTEFSEWFHNILEEAEIIDQRYPVKGMHVWMPHGFMIRKNTLKILRRILDRDHEEVLFPLLVPE
DELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRV
REITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRPPWDKFPGSEYTVAFDTLMPDGKTLQIGTVHNLG
QTFARTFEIKFETPEGDHEYVHQTCYGLSDRVIASVIAIHGDESGLCLPPDVAAHQVVIVPIIFKKAAEEVMEACRELRS
RLEAAGFRVHLDDRDIRAGRKYYEWEMRGVPLRVEIGPRDLEKGAAVISRRDTGEKVTADLQGIEETLRELMKDILENLR
TRAWERMESEIREAETLEEASRIVDEKRGIISFMWCGEEECGMDVEEKVRVDILGIQEEGSGTCINCGREAPTGLTLPEH
IS
1
481
1NJ1
1
481
O26708
A
1
21
501
1
expression tag
MET
-19
1NJ1
A
O26708
UNP
1
1
expression tag
GLY
-18
1NJ1
A
O26708
UNP
2
1
expression tag
SER
-17
1NJ1
A
O26708
UNP
3
1
expression tag
SER
-16
1NJ1
A
O26708
UNP
4
1
expression tag
HIS
-15
1NJ1
A
O26708
UNP
5
1
expression tag
HIS
-14
1NJ1
A
O26708
UNP
6
1
expression tag
HIS
-13
1NJ1
A
O26708
UNP
7
1
expression tag
HIS
-12
1NJ1
A
O26708
UNP
8
1
expression tag
HIS
-11
1NJ1
A
O26708
UNP
9
1
expression tag
HIS
-10
1NJ1
A
O26708
UNP
10
1
expression tag
SER
-9
1NJ1
A
O26708
UNP
11
1
expression tag
SER
-8
1NJ1
A
O26708
UNP
12
1
expression tag
GLY
-7
1NJ1
A
O26708
UNP
13
1
expression tag
LEU
-6
1NJ1
A
O26708
UNP
14
1
expression tag
VAL
-5
1NJ1
A
O26708
UNP
15
1
expression tag
PRO
-4
1NJ1
A
O26708
UNP
16
1
expression tag
ARG
-3
1NJ1
A
O26708
UNP
17
1
expression tag
GLY
-2
1NJ1
A
O26708
UNP
18
1
expression tag
SER
-1
1NJ1
A
O26708
UNP
19
1
expression tag
HIS
0
1NJ1
A
O26708
UNP
20
1
THR
SEE REMARK 999
TYR
473
1NJ1
A
O26708
UNP
473
493
1
GLY
SEE REMARK 999
ARG
474
1NJ1
A
O26708
UNP
474
494
1
LEU
SEE REMARK 999
ALA
475
1NJ1
A
O26708
UNP
475
495
1
THR
SEE REMARK 999
TYR
476
1NJ1
A
O26708
UNP
476
496
1
PRO
SEE REMARK 999
ALA
478
1NJ1
A
O26708
UNP
478
498
1
GLU
SEE REMARK 999
ARG
479
1NJ1
A
O26708
UNP
479
499
1
HIS
SEE REMARK 999
THR
480
1NJ1
A
O26708
UNP
480
500
1
ILE
SEE REMARK 999
TYR
481
1NJ1
A
O26708
UNP
481
501
2
7
3
2
2
5
4
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
ILE
34
A
ILE
54
A
ASP
35
A
ASP
55
A
VAL
45
A
VAL
65
A
TRP
46
A
TRP
66
A
GLU
70
A
GLU
90
A
GLU
71
A
GLU
91
A
MET
138
A
MET
158
A
PHE
147
A
PHE
167
A
GLU
162
A
GLU
182
A
HIS
173
A
HIS
193
A
HIS
262
A
HIS
282
A
LEU
268
A
LEU
288
A
THR
230
A
THR
250
A
GLY
240
A
GLY
260
A
TYR
217
A
TYR
237
A
LEU
224
A
LEU
244
A
LEU
202
A
LEU
222
A
ARG
205
A
ARG
225
A
LEU
77
A
LEU
97
A
PRO
79
A
PRO
99
A
SER
106
A
SER
126
A
LEU
114
A
LEU
134
A
TRP
99
A
TRP
119
A
GLY
103
A
GLY
123
A
LYS
250
A
LYS
270
A
GLU
252
A
GLU
272
A
HIS
258
A
HIS
278
A
TYR
260
A
TYR
280
A
LEU
286
A
LEU
306
A
CYS
287
A
CYS
307
A
ARG
348
A
ARG
368
A
GLY
349
A
GLY
369
A
VAL
329
A
VAL
349
A
LEU
331
A
LEU
351
A
VAL
297
A
VAL
317
A
PRO
301
A
PRO
321
A
LEU
352
A
LEU
372
A
ILE
356
A
ILE
376
A
ALA
365
A
ALA
385
A
ARG
370
A
ARG
390
A
LYS
376
A
LYS
396
A
ASP
380
A
ASP
400
A
ILE
411
A
ILE
431
A
GLU
413
A
GLU
433
A
ILE
430
A
ILE
450
A
TRP
435
A
TRP
455
A
TYR
473
A
TYR
493
A
ALA
478
A
ALA
498
A
ASP
452
A
ASP
472
A
GLU
458
A
GLU
478
BINDING SITE FOR RESIDUE ZN A 513
A
ZN
513
Software
4
BINDING SITE FOR RESIDUE MG A 514
A
MG
514
Software
5
BINDING SITE FOR RESIDUE 5CA A 512
A
5CA
512
Software
19
A
CYS
436
A
CYS
456
4
1_555
A
CYS
441
A
CYS
461
4
1_555
A
CYS
464
A
CYS
484
4
1_555
A
CYS
467
A
CYS
487
4
1_555
A
ASP
210
A
ASP
230
5
1_555
A
GLU
446
A
GLU
466
5
1_555
A
ASP
452
A
ASP
472
5
1_555
A
HOH
492
E
HOH
5
1_555
A
HOH
493
E
HOH
5
1_555
A
THR
117
A
THR
137
19
1_555
A
GLU
119
A
GLU
139
19
1_555
A
ARG
148
A
ARG
168
19
1_555
A
GLU
150
A
GLU
170
19
1_555
A
ILE
158
A
ILE
178
19
1_555
A
ARG
159
A
ARG
179
19
1_555
A
VAL
160
A
VAL
180
19
1_555
A
ILE
163
A
ILE
183
19
1_555
A
PHE
166
A
PHE
186
19
1_555
A
GLU
168
A
GLU
188
19
1_555
A
PHE
212
A
PHE
232
19
1_555
A
GLN
232
A
GLN
252
19
1_555
A
GLY
234
A
GLY
254
19
1_555
A
THR
235
A
THR
255
19
1_555
A
HIS
237
A
HIS
257
19
1_555
A
GLY
267
A
GLY
287
19
1_555
A
SER
269
A
SER
289
19
1_555
A
ARG
271
A
ARG
291
19
1_555
A
HOH
487
E
HOH
19
1_555
179
hexagonal
P 65 2 2