0.006893 0.003980 0.000000 0.000000 0.007959 0.000000 0.000000 0.000000 0.005870 0.00000 0.00000 0.00000 Kamtekar, S. Kennedy, W.D. Wang, J. Stathopoulos, C. Soll, D. Steitz, T.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 145.077 145.077 170.359 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N MG N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C Y 261 N C N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C N 279 N C N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C N 296 N O N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 R C N 310 N O N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N N Y 331 N C Y 332 N C Y 333 N C Y 334 N C Y 335 N C N 336 N O N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N N N 350 S C N 351 N C N 352 N O N 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C Y 359 N C N 360 N O N 361 N O N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C N 378 N C N 379 N C N 380 N O N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 100 1673 1678 10.1073/pnas.0437911100 12578991 The structural basis of cysteine aminoacylation of tRNAPro by prolyl-tRNA synthetases 2003 10.2210/pdb1nj2/pdb pdb_00001nj2 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2000-12-20 ADSC QUANTUM 4 Si(111) SINGLE WAVELENGTH M x-ray 1 0.94500 1.0 A1 CHESS 0.94500 SYNCHROTRON CHESS BEAMLINE A1 58170.258 Proline-tRNA Synthetase 6.1.1.15 N terminally His Tagged Enzyme 1 man polymer 65.409 ZINC ION 1 syn non-polymer 24.305 MAGNESIUM ION 1 syn non-polymer 18.015 water 13 nat water Prolyl-tRNA synthetase; Proline--tRNA ligase; ProRS E.C.6.1.1.15 no no MGSSHHHHHHSSGLVPRGSHMQKPIKKDPNRYHGEKMTEFSEWFHNILEEAEIIDQRYPVKGMHVWMPHGFMIRKNTLKI LRRILDRDHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRF YQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRPPWDKFPGSEYTVA FDTLMPDGKTLQIGTVHNLGQTFARTFEIKFETPEGDHEYVHQTCYGLSDRVIASVIAIHGDESGLCLPPDVAAHQVVIV PIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKYYEWEMRGVPLRVEIGPRDLEKGAAVISRRDTGEKVTAD LQGIEETLRELMKDILENLRTRAWERMESEIREAETLEEASRIVDEKRGIISFMWCGEEECGMDVEEKVRVDILGIQEEG SGTCINCGREAPYRAYLARTY MGSSHHHHHHSSGLVPRGSHMQKPIKKDPNRYHGEKMTEFSEWFHNILEEAEIIDQRYPVKGMHVWMPHGFMIRKNTLKI LRRILDRDHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRF YQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRPPWDKFPGSEYTVA FDTLMPDGKTLQIGTVHNLGQTFARTFEIKFETPEGDHEYVHQTCYGLSDRVIASVIAIHGDESGLCLPPDVAAHQVVIV PIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKYYEWEMRGVPLRVEIGPRDLEKGAAVISRRDTGEKVTAD LQGIEETLRELMKDILENLRTRAWERMESEIREAETLEEASRIVDEKRGIISFMWCGEEECGMDVEEKVRVDILGIQEEG SGTCINCGREAPYRAYLARTY A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Methanothermobacter Methanothermobacter thermautotrophicus Delta H Escherichia sample Strain supplemented with additional plasmid encoding rare tRNAs MTH611 187420 Methanothermobacter thermautotrophicus 562 Escherichia coli BL21DE3 RecA- PLASMID pET15b 1 4.98 75.13 VAPOR DIFFUSION, HANGING DROP 7.5 Tris, Beta-Mercaptoethanol, MgCl2,NaCl, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Derived calculations Source and taxonomy Version format compliance Data collection Database references Derived calculations 1 0 2003-03-04 1 1 2008-04-29 1 2 2011-07-13 1 3 2024-02-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2002-12-30 REL REL ZN ZINC ION MG MAGNESIUM ION HOH water ZN 495 2 ZN ZN 495 A MG 496 3 MG MG 496 A HOH 482 4 HOH HOH 482 A HOH 483 4 HOH HOH 483 A HOH 484 4 HOH HOH 484 A HOH 485 4 HOH HOH 485 A HOH 486 4 HOH HOH 486 A HOH 487 4 HOH HOH 487 A HOH 488 4 HOH HOH 488 A HOH 489 4 HOH HOH 489 A HOH 490 4 HOH HOH 490 A HOH 491 4 HOH HOH 491 A HOH 492 4 HOH HOH 492 A HOH 493 4 HOH HOH 493 A HOH 494 4 HOH HOH 494 A n 1 -19 A n 2 -18 A n 3 -17 A n 4 -16 A n 5 -15 A n 6 -14 A n 7 -13 A n 8 -12 A n 9 -11 A n 10 -10 A n 11 -9 A n 12 -8 A n 13 -7 A n 14 -6 A n 15 -5 A n 16 -4 A n 17 -3 A n 18 -2 A n 19 -1 A n 20 0 A n 21 1 A n 22 2 A n 23 3 A n 24 4 A n 25 5 A n 26 6 A n 27 7 A n 28 8 A n 29 9 A n 30 10 A n 31 11 A n 32 12 A n 33 13 A n 34 14 A n 35 15 A n 36 16 A n 37 17 A n 38 18 A GLU 19 n 39 GLU 19 A PHE 20 n 40 PHE 20 A SER 21 n 41 SER 21 A GLU 22 n 42 GLU 22 A TRP 23 n 43 TRP 23 A PHE 24 n 44 PHE 24 A HIS 25 n 45 HIS 25 A ASN 26 n 46 ASN 26 A ILE 27 n 47 ILE 27 A LEU 28 n 48 LEU 28 A GLU 29 n 49 GLU 29 A GLU 30 n 50 GLU 30 A ALA 31 n 51 ALA 31 A GLU 32 n 52 GLU 32 A ILE 33 n 53 ILE 33 A ILE 34 n 54 ILE 34 A ASP 35 n 55 ASP 35 A GLN 36 n 56 GLN 36 A ARG 37 n 57 ARG 37 A TYR 38 n 58 TYR 38 A PRO 39 n 59 PRO 39 A VAL 40 n 60 VAL 40 A LYS 41 n 61 LYS 41 A GLY 42 n 62 GLY 42 A MET 43 n 63 MET 43 A HIS 44 n 64 HIS 44 A VAL 45 n 65 VAL 45 A TRP 46 n 66 TRP 46 A MET 47 n 67 MET 47 A PRO 48 n 68 PRO 48 A HIS 49 n 69 HIS 49 A GLY 50 n 70 GLY 50 A PHE 51 n 71 PHE 51 A MET 52 n 72 MET 52 A ILE 53 n 73 ILE 53 A ARG 54 n 74 ARG 54 A LYS 55 n 75 LYS 55 A ASN 56 n 76 ASN 56 A THR 57 n 77 THR 57 A LEU 58 n 78 LEU 58 A LYS 59 n 79 LYS 59 A ILE 60 n 80 ILE 60 A LEU 61 n 81 LEU 61 A ARG 62 n 82 ARG 62 A ARG 63 n 83 ARG 63 A ILE 64 n 84 ILE 64 A LEU 65 n 85 LEU 65 A ASP 66 n 86 ASP 66 A ARG 67 n 87 ARG 67 A ASP 68 n 88 ASP 68 A HIS 69 n 89 HIS 69 A GLU 70 n 90 GLU 70 A GLU 71 n 91 GLU 71 A VAL 72 n 92 VAL 72 A LEU 73 n 93 LEU 73 A PHE 74 n 94 PHE 74 A PRO 75 n 95 PRO 75 A LEU 76 n 96 LEU 76 A LEU 77 n 97 LEU 77 A VAL 78 n 98 VAL 78 A PRO 79 n 99 PRO 79 A GLU 80 n 100 GLU 80 A ASP 81 n 101 ASP 81 A GLU 82 n 102 GLU 82 A LEU 83 n 103 LEU 83 A ALA 84 n 104 ALA 84 A n 105 85 A n 106 86 A n 107 87 A n 108 88 A n 109 89 A n 110 90 A n 111 91 A n 112 92 A n 113 93 A n 114 94 A n 115 95 A GLU 96 n 116 GLU 96 A VAL 97 n 117 VAL 97 A TYR 98 n 118 TYR 98 A TRP 99 n 119 TRP 99 A VAL 100 n 120 VAL 100 A THR 101 n 121 THR 101 A HIS 102 n 122 HIS 102 A GLY 103 n 123 GLY 103 A GLY 104 n 124 GLY 104 A LEU 105 n 125 LEU 105 A SER 106 n 126 SER 106 A LYS 107 n 127 LYS 107 A LEU 108 n 128 LEU 108 A GLN 109 n 129 GLN 109 A ARG 110 n 130 ARG 110 A LYS 111 n 131 LYS 111 A LEU 112 n 132 LEU 112 A ALA 113 n 133 ALA 113 A LEU 114 n 134 LEU 114 A ARG 115 n 135 ARG 115 A PRO 116 n 136 PRO 116 A THR 117 n 137 THR 117 A SER 118 n 138 SER 118 A GLU 119 n 139 GLU 119 A THR 120 n 140 THR 120 A VAL 121 n 141 VAL 121 A MET 122 n 142 MET 122 A TYR 123 n 143 TYR 123 A PRO 124 n 144 PRO 124 A MET 125 n 145 MET 125 A PHE 126 n 146 PHE 126 A ALA 127 n 147 ALA 127 A LEU 128 n 148 LEU 128 A TRP 129 n 149 TRP 129 A VAL 130 n 150 VAL 130 A ARG 131 n 151 ARG 131 A SER 132 n 152 SER 132 A HIS 133 n 153 HIS 133 A THR 134 n 154 THR 134 A ASP 135 n 155 ASP 135 A LEU 136 n 156 LEU 136 A PRO 137 n 157 PRO 137 A MET 138 n 158 MET 138 A ARG 139 n 159 ARG 139 A PHE 140 n 160 PHE 140 A TYR 141 n 161 TYR 141 A GLN 142 n 162 GLN 142 A VAL 143 n 163 VAL 143 A VAL 144 n 164 VAL 144 A ASN 145 n 165 ASN 145 A THR 146 n 166 THR 146 A PHE 147 n 167 PHE 147 A ARG 148 n 168 ARG 148 A TYR 149 n 169 TYR 149 A GLU 150 n 170 GLU 150 A THR 151 n 171 THR 151 A LYS 152 n 172 LYS 152 A HIS 153 n 173 HIS 153 A THR 154 n 174 THR 154 A ARG 155 n 175 ARG 155 A PRO 156 n 176 PRO 156 A LEU 157 n 177 LEU 157 A ILE 158 n 178 ILE 158 A ARG 159 n 179 ARG 159 A VAL 160 n 180 VAL 160 A ARG 161 n 181 ARG 161 A GLU 162 n 182 GLU 162 A ILE 163 n 183 ILE 163 A THR 164 n 184 THR 164 A THR 165 n 185 THR 165 A PHE 166 n 186 PHE 166 A LYS 167 n 187 LYS 167 A GLU 168 n 188 GLU 168 A ALA 169 n 189 ALA 169 A HIS 170 n 190 HIS 170 A THR 171 n 191 THR 171 A ILE 172 n 192 ILE 172 A HIS 173 n 193 HIS 173 A ALA 174 n 194 ALA 174 A THR 175 n 195 THR 175 A ALA 176 n 196 ALA 176 A SER 177 n 197 SER 177 A GLU 178 n 198 GLU 178 A ALA 179 n 199 ALA 179 A GLU 180 n 200 GLU 180 A GLU 181 n 201 GLU 181 A GLN 182 n 202 GLN 182 A VAL 183 n 203 VAL 183 A GLU 184 n 204 GLU 184 A ARG 185 n 205 ARG 185 A ALA 186 n 206 ALA 186 A VAL 187 n 207 VAL 187 A GLU 188 n 208 GLU 188 A ILE 189 n 209 ILE 189 A TYR 190 n 210 TYR 190 A LYS 191 n 211 LYS 191 A GLU 192 n 212 GLU 192 A PHE 193 n 213 PHE 193 A PHE 194 n 214 PHE 194 A ASN 195 n 215 ASN 195 A SER 196 n 216 SER 196 A LEU 197 n 217 LEU 197 A GLY 198 n 218 GLY 198 A ILE 199 n 219 ILE 199 A PRO 200 n 220 PRO 200 A TYR 201 n 221 TYR 201 A LEU 202 n 222 LEU 202 A ILE 203 n 223 ILE 203 A THR 204 n 224 THR 204 A ARG 205 n 225 ARG 205 A ARG 206 n 226 ARG 206 A PRO 207 n 227 PRO 207 A PRO 208 n 228 PRO 208 A TRP 209 n 229 TRP 209 A ASP 210 n 230 ASP 210 A LYS 211 n 231 LYS 211 A PHE 212 n 232 PHE 212 A PRO 213 n 233 PRO 213 A GLY 214 n 234 GLY 214 A SER 215 n 235 SER 215 A GLU 216 n 236 GLU 216 A TYR 217 n 237 TYR 217 A THR 218 n 238 THR 218 A VAL 219 n 239 VAL 219 A ALA 220 n 240 ALA 220 A PHE 221 n 241 PHE 221 A ASP 222 n 242 ASP 222 A THR 223 n 243 THR 223 A LEU 224 n 244 LEU 224 A MET 225 n 245 MET 225 A PRO 226 n 246 PRO 226 A ASP 227 n 247 ASP 227 A GLY 228 n 248 GLY 228 A LYS 229 n 249 LYS 229 A THR 230 n 250 THR 230 A LEU 231 n 251 LEU 231 A GLN 232 n 252 GLN 232 A ILE 233 n 253 ILE 233 A GLY 234 n 254 GLY 234 A THR 235 n 255 THR 235 A VAL 236 n 256 VAL 236 A HIS 237 n 257 HIS 237 A ASN 238 n 258 ASN 238 A LEU 239 n 259 LEU 239 A GLY 240 n 260 GLY 240 A GLN 241 n 261 GLN 241 A THR 242 n 262 THR 242 A PHE 243 n 263 PHE 243 A ALA 244 n 264 ALA 244 A ARG 245 n 265 ARG 245 A THR 246 n 266 THR 246 A PHE 247 n 267 PHE 247 A GLU 248 n 268 GLU 248 A ILE 249 n 269 ILE 249 A LYS 250 n 270 LYS 250 A PHE 251 n 271 PHE 251 A GLU 252 n 272 GLU 252 A THR 253 n 273 THR 253 A PRO 254 n 274 PRO 254 A GLU 255 n 275 GLU 255 A GLY 256 n 276 GLY 256 A ASP 257 n 277 ASP 257 A HIS 258 n 278 HIS 258 A GLU 259 n 279 GLU 259 A TYR 260 n 280 TYR 260 A VAL 261 n 281 VAL 261 A HIS 262 n 282 HIS 262 A GLN 263 n 283 GLN 263 A THR 264 n 284 THR 264 A CYS 265 n 285 CYS 265 A TYR 266 n 286 TYR 266 A GLY 267 n 287 GLY 267 A LEU 268 n 288 LEU 268 A SER 269 n 289 SER 269 A ASP 270 n 290 ASP 270 A ARG 271 n 291 ARG 271 A VAL 272 n 292 VAL 272 A ILE 273 n 293 ILE 273 A ALA 274 n 294 ALA 274 A SER 275 n 295 SER 275 A VAL 276 n 296 VAL 276 A ILE 277 n 297 ILE 277 A ALA 278 n 298 ALA 278 A ILE 279 n 299 ILE 279 A HIS 280 n 300 HIS 280 A GLY 281 n 301 GLY 281 A ASP 282 n 302 ASP 282 A GLU 283 n 303 GLU 283 A SER 284 n 304 SER 284 A GLY 285 n 305 GLY 285 A LEU 286 n 306 LEU 286 A CYS 287 n 307 CYS 287 A LEU 288 n 308 LEU 288 A PRO 289 n 309 PRO 289 A PRO 290 n 310 PRO 290 A ASP 291 n 311 ASP 291 A VAL 292 n 312 VAL 292 A ALA 293 n 313 ALA 293 A ALA 294 n 314 ALA 294 A HIS 295 n 315 HIS 295 A GLN 296 n 316 GLN 296 A VAL 297 n 317 VAL 297 A VAL 298 n 318 VAL 298 A ILE 299 n 319 ILE 299 A VAL 300 n 320 VAL 300 A PRO 301 n 321 PRO 301 A ILE 302 n 322 ILE 302 A ILE 303 n 323 ILE 303 A PHE 304 n 324 PHE 304 A LYS 305 n 325 LYS 305 A LYS 306 n 326 LYS 306 A ALA 307 n 327 ALA 307 A ALA 308 n 328 ALA 308 A GLU 309 n 329 GLU 309 A GLU 310 n 330 GLU 310 A VAL 311 n 331 VAL 311 A MET 312 n 332 MET 312 A GLU 313 n 333 GLU 313 A ALA 314 n 334 ALA 314 A CYS 315 n 335 CYS 315 A ARG 316 n 336 ARG 316 A GLU 317 n 337 GLU 317 A LEU 318 n 338 LEU 318 A ARG 319 n 339 ARG 319 A SER 320 n 340 SER 320 A ARG 321 n 341 ARG 321 A LEU 322 n 342 LEU 322 A GLU 323 n 343 GLU 323 A ALA 324 n 344 ALA 324 A ALA 325 n 345 ALA 325 A GLY 326 n 346 GLY 326 A PHE 327 n 347 PHE 327 A ARG 328 n 348 ARG 328 A VAL 329 n 349 VAL 329 A HIS 330 n 350 HIS 330 A LEU 331 n 351 LEU 331 A ASP 332 n 352 ASP 332 A ASP 333 n 353 ASP 333 A ARG 334 n 354 ARG 334 A ASP 335 n 355 ASP 335 A ILE 336 n 356 ILE 336 A ARG 337 n 357 ARG 337 A ALA 338 n 358 ALA 338 A GLY 339 n 359 GLY 339 A ARG 340 n 360 ARG 340 A LYS 341 n 361 LYS 341 A TYR 342 n 362 TYR 342 A TYR 343 n 363 TYR 343 A GLU 344 n 364 GLU 344 A TRP 345 n 365 TRP 345 A GLU 346 n 366 GLU 346 A MET 347 n 367 MET 347 A ARG 348 n 368 ARG 348 A GLY 349 n 369 GLY 349 A VAL 350 n 370 VAL 350 A PRO 351 n 371 PRO 351 A LEU 352 n 372 LEU 352 A ARG 353 n 373 ARG 353 A VAL 354 n 374 VAL 354 A GLU 355 n 375 GLU 355 A ILE 356 n 376 ILE 356 A GLY 357 n 377 GLY 357 A PRO 358 n 378 PRO 358 A ARG 359 n 379 ARG 359 A ASP 360 n 380 ASP 360 A LEU 361 n 381 LEU 361 A GLU 362 n 382 GLU 362 A LYS 363 n 383 LYS 363 A GLY 364 n 384 GLY 364 A ALA 365 n 385 ALA 365 A ALA 366 n 386 ALA 366 A VAL 367 n 387 VAL 367 A ILE 368 n 388 ILE 368 A SER 369 n 389 SER 369 A ARG 370 n 390 ARG 370 A ARG 371 n 391 ARG 371 A ASP 372 n 392 ASP 372 A THR 373 n 393 THR 373 A GLY 374 n 394 GLY 374 A GLU 375 n 395 GLU 375 A LYS 376 n 396 LYS 376 A VAL 377 n 397 VAL 377 A THR 378 n 398 THR 378 A ALA 379 n 399 ALA 379 A ASP 380 n 400 ASP 380 A LEU 381 n 401 LEU 381 A GLN 382 n 402 GLN 382 A GLY 383 n 403 GLY 383 A ILE 384 n 404 ILE 384 A GLU 385 n 405 GLU 385 A GLU 386 n 406 GLU 386 A THR 387 n 407 THR 387 A LEU 388 n 408 LEU 388 A ARG 389 n 409 ARG 389 A GLU 390 n 410 GLU 390 A LEU 391 n 411 LEU 391 A MET 392 n 412 MET 392 A LYS 393 n 413 LYS 393 A ASP 394 n 414 ASP 394 A ILE 395 n 415 ILE 395 A LEU 396 n 416 LEU 396 A GLU 397 n 417 GLU 397 A ASN 398 n 418 ASN 398 A LEU 399 n 419 LEU 399 A ARG 400 n 420 ARG 400 A THR 401 n 421 THR 401 A ARG 402 n 422 ARG 402 A ALA 403 n 423 ALA 403 A TRP 404 n 424 TRP 404 A GLU 405 n 425 GLU 405 A ARG 406 n 426 ARG 406 A MET 407 n 427 MET 407 A GLU 408 n 428 GLU 408 A SER 409 n 429 SER 409 A GLU 410 n 430 GLU 410 A ILE 411 n 431 ILE 411 A ARG 412 n 432 ARG 412 A GLU 413 n 433 GLU 413 A ALA 414 n 434 ALA 414 A GLU 415 n 435 GLU 415 A THR 416 n 436 THR 416 A LEU 417 n 437 LEU 417 A GLU 418 n 438 GLU 418 A GLU 419 n 439 GLU 419 A ALA 420 n 440 ALA 420 A SER 421 n 441 SER 421 A ARG 422 n 442 ARG 422 A ILE 423 n 443 ILE 423 A VAL 424 n 444 VAL 424 A ASP 425 n 445 ASP 425 A GLU 426 n 446 GLU 426 A LYS 427 n 447 LYS 427 A ARG 428 n 448 ARG 428 A GLY 429 n 449 GLY 429 A ILE 430 n 450 ILE 430 A ILE 431 n 451 ILE 431 A SER 432 n 452 SER 432 A PHE 433 n 453 PHE 433 A MET 434 n 454 MET 434 A TRP 435 n 455 TRP 435 A CYS 436 n 456 CYS 436 A GLY 437 n 457 GLY 437 A GLU 438 n 458 GLU 438 A GLU 439 n 459 GLU 439 A GLU 440 n 460 GLU 440 A CYS 441 n 461 CYS 441 A GLY 442 n 462 GLY 442 A MET 443 n 463 MET 443 A ASP 444 n 464 ASP 444 A VAL 445 n 465 VAL 445 A GLU 446 n 466 GLU 446 A GLU 447 n 467 GLU 447 A LYS 448 n 468 LYS 448 A VAL 449 n 469 VAL 449 A ARG 450 n 470 ARG 450 A VAL 451 n 471 VAL 451 A ASP 452 n 472 ASP 452 A ILE 453 n 473 ILE 453 A LEU 454 n 474 LEU 454 A GLY 455 n 475 GLY 455 A ILE 456 n 476 ILE 456 A GLN 457 n 477 GLN 457 A GLU 458 n 478 GLU 458 A GLU 459 n 479 GLU 459 A GLY 460 n 480 GLY 460 A SER 461 n 481 SER 461 A GLY 462 n 482 GLY 462 A THR 463 n 483 THR 463 A CYS 464 n 484 CYS 464 A ILE 465 n 485 ILE 465 A ASN 466 n 486 ASN 466 A CYS 467 n 487 CYS 467 A GLY 468 n 488 GLY 468 A ARG 469 n 489 ARG 469 A GLU 470 n 490 GLU 470 A ALA 471 n 491 ALA 471 A PRO 472 n 492 PRO 472 A TYR 473 n 493 TYR 473 A ARG 474 n 494 ARG 474 A ALA 475 n 495 ALA 475 A TYR 476 n 496 TYR 476 A LEU 477 n 497 LEU 477 A ALA 478 n 498 ALA 478 A ARG 479 n 499 ARG 479 A THR 480 n 500 THR 480 A TYR 481 n 501 TYR 481 A author_and_software_defined_assembly PISA,PQS 2 dimeric 4510 -50 41670 A CYS 436 A SG CYS 456 1_555 A ZN 495 B ZN ZN 1_555 A CYS 441 A SG CYS 461 1_555 104.9 A CYS 436 A SG CYS 456 1_555 A ZN 495 B ZN ZN 1_555 A CYS 464 A SG CYS 484 1_555 141.4 A CYS 441 A SG CYS 461 1_555 A ZN 495 B ZN ZN 1_555 A CYS 464 A SG CYS 484 1_555 100.5 A CYS 436 A SG CYS 456 1_555 A ZN 495 B ZN ZN 1_555 A CYS 467 A SG CYS 487 1_555 91.7 A CYS 441 A SG CYS 461 1_555 A ZN 495 B ZN ZN 1_555 A CYS 467 A SG CYS 487 1_555 99.6 A CYS 464 A SG CYS 484 1_555 A ZN 495 B ZN ZN 1_555 A CYS 467 A SG CYS 487 1_555 112.4 A ASP 452 A OD2 ASP 472 1_555 A MG 496 C MG MG 1_555 A ASP 452 A OD1 ASP 472 1_555 47.0 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 7_555 y,x,-z+2/3 crystal symmetry operation 0.0000000000 0.0000000000 113.5726666667 A N ASP 35 A N ASP 55 A O VAL 45 A O VAL 65 A N GLU 70 A N GLU 90 A O ARG 139 A O ARG 159 A N MET 138 A N MET 158 A O ILE 172 A O ILE 192 A N ALA 169 A N ALA 189 A O TYR 266 A O TYR 286 A O CYS 265 A O CYS 285 A N HIS 237 A N HIS 257 A O VAL 236 A O VAL 256 A N VAL 219 A N VAL 239 A O ALA 220 A O ALA 240 A N THR 204 A N THR 224 A N VAL 78 A N VAL 98 A O ALA 113 A O ALA 133 A O LEU 112 A O LEU 132 A N VAL 100 A N VAL 120 A N PHE 251 A N PHE 271 A O GLU 259 A O GLU 279 A O HIS 330 A O HIS 350 A N ILE 299 A N ILE 319 A N VAL 298 A N VAL 318 A O VAL 354 A O VAL 374 A N GLU 355 A N GLU 375 A O VAL 367 A O VAL 387 A N ALA 366 A N ALA 386 A O ALA 379 A O ALA 399 A N ARG 412 A N ARG 432 A O SER 432 A O SER 452 A N PHE 433 A N PHE 453 A O ALA 475 A O ALA 495 A O ALA 478 A O ALA 498 A N ASP 452 A N ASP 472 1 A MET -19 A MET 1 1 Y 1 A GLY -18 A GLY 2 1 Y 1 A SER -17 A SER 3 1 Y 1 A SER -16 A SER 4 1 Y 1 A HIS -15 A HIS 5 1 Y 1 A HIS -14 A HIS 6 1 Y 1 A HIS -13 A HIS 7 1 Y 1 A HIS -12 A HIS 8 1 Y 1 A HIS -11 A HIS 9 1 Y 1 A HIS -10 A HIS 10 1 Y 1 A SER -9 A SER 11 1 Y 1 A SER -8 A SER 12 1 Y 1 A GLY -7 A GLY 13 1 Y 1 A LEU -6 A LEU 14 1 Y 1 A VAL -5 A VAL 15 1 Y 1 A PRO -4 A PRO 16 1 Y 1 A ARG -3 A ARG 17 1 Y 1 A GLY -2 A GLY 18 1 Y 1 A SER -1 A SER 19 1 Y 1 A HIS 0 A HIS 20 1 Y 1 A MET 1 A MET 21 1 Y 1 A GLN 2 A GLN 22 1 Y 1 A LYS 3 A LYS 23 1 Y 1 A PRO 4 A PRO 24 1 Y 1 A ILE 5 A ILE 25 1 Y 1 A LYS 6 A LYS 26 1 Y 1 A LYS 7 A LYS 27 1 Y 1 A ASP 8 A ASP 28 1 Y 1 A PRO 9 A PRO 29 1 Y 1 A ASN 10 A ASN 30 1 Y 1 A ARG 11 A ARG 31 1 Y 1 A TYR 12 A TYR 32 1 Y 1 A HIS 13 A HIS 33 1 Y 1 A GLY 14 A GLY 34 1 Y 1 A GLU 15 A GLU 35 1 Y 1 A LYS 16 A LYS 36 1 Y 1 A MET 17 A MET 37 1 Y 1 A THR 18 A THR 38 1 Y 1 A LYS 85 A LYS 105 1 Y 1 A GLU 86 A GLU 106 1 Y 1 A ALA 87 A ALA 107 1 Y 1 A ILE 88 A ILE 108 1 Y 1 A HIS 89 A HIS 109 1 Y 1 A VAL 90 A VAL 110 1 Y 1 A LYS 91 A LYS 111 1 Y 1 A GLY 92 A GLY 112 1 Y 1 A PHE 93 A PHE 113 1 Y 1 A GLU 94 A GLU 114 1 Y 1 A ASP 95 A ASP 115 1 Y 1 A ARG 37 -67.97 36.20 1 A PRO 39 -55.53 14.74 1 A ASP 66 -57.86 -3.44 1 A LEU 73 -170.50 103.31 1 A LEU 83 -64.57 -79.75 1 A ARG 110 177.88 107.84 1 A GLU 119 -26.49 -65.64 1 A ARG 131 -158.49 46.33 1 A SER 132 165.31 135.00 1 A LYS 152 57.73 19.40 1 A HIS 153 -154.57 88.78 1 A LEU 157 60.26 -7.99 1 A THR 204 -128.74 -160.27 1 A ARG 206 -36.95 145.82 1 A LEU 239 -68.80 -170.32 1 A GLU 248 64.19 83.59 1 A TYR 266 -172.15 149.62 1 A SER 269 -121.34 -147.14 1 A HIS 280 -94.45 38.88 1 A ASP 282 152.94 158.36 1 A LYS 305 91.05 -3.20 1 A GLU 313 -45.44 -14.02 1 A GLU 317 -52.12 -6.18 1 A ALA 324 -79.18 38.96 1 A ARG 334 -17.82 159.73 1 A ARG 337 -58.54 105.95 1 A ALA 338 -38.84 -33.65 1 A THR 373 -106.29 -84.27 1 A LEU 381 -52.70 -6.05 1 A GLN 382 -74.93 -73.27 1 A ALA 420 -66.59 -71.01 1 A ARG 428 36.32 -130.50 1 A GLN 457 -162.34 82.28 1 A GLU 458 -34.36 115.68 1 A ARG 469 -50.47 -173.88 1 A ALA 478 179.60 171.47 PROTEIN_REP.PARAM PROTEIN.TOP ION.PARAM WATER_REP.PARAM 89.4 7.03 14.95 0.00 7.03 0.00 -14.06 0.273 0.005 0.239 0.239 0.239 3.11 29.95 3457 36056 34613 10.0 96.0 RANDOM 1 RESTRAINED THROUGHOUT 0.0 MOLECULAR REPLACEMENT Methanocaldococcus janaschii Proline tRNA Synthetase Engh & Huber FLAT MODEL 24.3074 0.264032 0.52 0.75 3.11 29.95 13 3708 2 0 3693 0.009 1.4 22.9 0.92 1.61 1.50 2.92 2.00 2.23 2.00 3.77 2.50 0.387 0.018 0.366 3.29 479 4549 6 9.5 82.6 3.10 30.0 1NJ2 36062 35918 -3 0.066 1 22.8 4.7 99.6 0.77 3.10 3.21 2.0 1 99.7 data reduction DENZO data scaling SCALEPACK phasing AMoRE refinement CNS 1.0 Crystal structure of Prolyl-tRNA Synthetase from Methanothermobacter thermautotrophicus 1 N N 2 N N 3 N N 4 N N The biological assembly is a dimer constructed by a twofold rotation. A GLU 19 A GLU 39 HELX_P A ALA 31 A ALA 51 1 1 13 A MET 47 A MET 67 HELX_P A ASP 66 A ASP 86 1 2 20 A GLU 80 A GLU 100 HELX_P A ALA 84 A ALA 104 1 3 5 A SER 118 A SER 138 HELX_P A VAL 130 A VAL 150 1 4 13 A THR 175 A THR 195 HELX_P A GLY 198 A GLY 218 1 5 24 A GLN 241 A GLN 261 HELX_P A GLU 248 A GLU 268 1 6 8 A ASP 270 A ASP 290 HELX_P A HIS 280 A HIS 300 1 7 11 A ALA 307 A ALA 327 HELX_P A ALA 324 A ALA 344 1 8 18 A ARG 337 A ARG 357 HELX_P A GLY 349 A GLY 369 1 9 13 A GLY 357 A GLY 377 HELX_P A GLY 364 A GLY 384 1 10 8 A GLY 383 A GLY 403 HELX_P A SER 409 A SER 429 1 11 27 A THR 416 A THR 436 HELX_P A ARG 428 A ARG 448 1 12 13 A GLU 438 A GLU 458 HELX_P A ARG 450 A ARG 470 1 13 13 metalc 2.575 A CYS 436 A SG CYS 456 1_555 A ZN 495 B ZN ZN 1_555 metalc 2.306 A CYS 441 A SG CYS 461 1_555 A ZN 495 B ZN ZN 1_555 metalc 2.792 A ASP 452 A OD2 ASP 472 1_555 A MG 496 C MG MG 1_555 metalc 2.728 A ASP 452 A OD1 ASP 472 1_555 A MG 496 C MG MG 1_555 metalc 2.424 A CYS 464 A SG CYS 484 1_555 A ZN 495 B ZN ZN 1_555 metalc 2.577 A CYS 467 A SG CYS 487 1_555 A ZN 495 B ZN ZN 1_555 LIGASE Class-II tRNA synthetase, LIGASE A LEU 136 A LEU 156 1 A PRO 137 A PRO 157 1.85 SYP_METTH UNP 1 1 O26708 MQKPIKKDPNRYHGEKMTEFSEWFHNILEEAEIIDQRYPVKGMHVWMPHGFMIRKNTLKILRRILDRDHEEVLFPLLVPE DELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRV REITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRPPWDKFPGSEYTVAFDTLMPDGKTLQIGTVHNLG QTFARTFEIKFETPEGDHEYVHQTCYGLSDRVIASVIAIHGDESGLCLPPDVAAHQVVIVPIIFKKAAEEVMEACRELRS RLEAAGFRVHLDDRDIRAGRKYYEWEMRGVPLRVEIGPRDLEKGAAVISRRDTGEKVTADLQGIEETLRELMKDILENLR TRAWERMESEIREAETLEEASRIVDEKRGIISFMWCGEEECGMDVEEKVRVDILGIQEEGSGTCINCGREAPTGLTLPEH IS 1 481 1NJ2 1 481 O26708 A 1 21 501 1 expression tag MET -19 1NJ2 A O26708 UNP 1 1 expression tag GLY -18 1NJ2 A O26708 UNP 2 1 expression tag SER -17 1NJ2 A O26708 UNP 3 1 expression tag SER -16 1NJ2 A O26708 UNP 4 1 expression tag HIS -15 1NJ2 A O26708 UNP 5 1 expression tag HIS -14 1NJ2 A O26708 UNP 6 1 expression tag HIS -13 1NJ2 A O26708 UNP 7 1 expression tag HIS -12 1NJ2 A O26708 UNP 8 1 expression tag HIS -11 1NJ2 A O26708 UNP 9 1 expression tag HIS -10 1NJ2 A O26708 UNP 10 1 expression tag SER -9 1NJ2 A O26708 UNP 11 1 expression tag SER -8 1NJ2 A O26708 UNP 12 1 expression tag GLY -7 1NJ2 A O26708 UNP 13 1 expression tag LEU -6 1NJ2 A O26708 UNP 14 1 expression tag VAL -5 1NJ2 A O26708 UNP 15 1 expression tag PRO -4 1NJ2 A O26708 UNP 16 1 expression tag ARG -3 1NJ2 A O26708 UNP 17 1 expression tag GLY -2 1NJ2 A O26708 UNP 18 1 expression tag SER -1 1NJ2 A O26708 UNP 19 1 expression tag HIS 0 1NJ2 A O26708 UNP 20 1 THR SEE REMARK 999 TYR 473 1NJ2 A O26708 UNP 473 493 1 GLY SEE REMARK 999 ARG 474 1NJ2 A O26708 UNP 474 494 1 LEU SEE REMARK 999 ALA 475 1NJ2 A O26708 UNP 475 495 1 THR SEE REMARK 999 TYR 476 1NJ2 A O26708 UNP 476 496 1 PRO SEE REMARK 999 ALA 478 1NJ2 A O26708 UNP 478 498 1 GLU SEE REMARK 999 ARG 479 1NJ2 A O26708 UNP 479 499 1 HIS SEE REMARK 999 THR 480 1NJ2 A O26708 UNP 480 500 1 ILE SEE REMARK 999 TYR 481 1NJ2 A O26708 UNP 481 501 2 7 3 2 5 4 anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A ILE 34 A ILE 54 A ASP 35 A ASP 55 A VAL 45 A VAL 65 A TRP 46 A TRP 66 A GLU 70 A GLU 90 A GLU 71 A GLU 91 A MET 138 A MET 158 A PHE 147 A PHE 167 A GLU 162 A GLU 182 A HIS 173 A HIS 193 A HIS 262 A HIS 282 A LEU 268 A LEU 288 A THR 230 A THR 250 A ASN 238 A ASN 258 A TYR 217 A TYR 237 A LEU 224 A LEU 244 A LEU 202 A LEU 222 A THR 204 A THR 224 A LEU 77 A LEU 97 A PRO 79 A PRO 99 A LYS 107 A LYS 127 A LEU 114 A LEU 134 A TRP 99 A TRP 119 A HIS 102 A HIS 122 A LYS 250 A LYS 270 A GLU 252 A GLU 272 A HIS 258 A HIS 278 A TYR 260 A TYR 280 A VAL 329 A VAL 349 A LEU 331 A LEU 351 A VAL 297 A VAL 317 A PRO 301 A PRO 321 A LEU 352 A LEU 372 A ILE 356 A ILE 376 A ALA 365 A ALA 385 A SER 369 A SER 389 A LYS 376 A LYS 396 A ASP 380 A ASP 400 A ILE 411 A ILE 431 A GLU 413 A GLU 433 A ILE 430 A ILE 450 A TRP 435 A TRP 455 A TYR 473 A TYR 493 A ALA 478 A ALA 498 A ASP 452 A ASP 472 A GLU 458 A GLU 478 BINDING SITE FOR RESIDUE ZN A 495 A ZN 495 Software 4 BINDING SITE FOR RESIDUE MG A 496 A MG 496 Software 1 A CYS 436 A CYS 456 4 1_555 A CYS 441 A CYS 461 4 1_555 A CYS 464 A CYS 484 4 1_555 A CYS 467 A CYS 487 4 1_555 A ASP 452 A ASP 472 1 1_555 179 hexagonal P 65 2 2