1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Wang, B.
Alam, S.L.
Meyer, H.H.
Payne, M.
Stemmler, T.L.
Davis, D.R.
Sundquist, W.I.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
R
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
S
N
64
N
O
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
N
N
73
S
C
N
74
N
C
N
75
N
O
N
76
N
C
N
77
N
C
N
78
N
C
N
79
N
O
N
80
N
N
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
N
N
93
S
C
N
94
N
C
N
95
N
O
N
96
N
C
N
97
N
C
N
98
N
C
N
99
N
O
N
100
N
O
N
101
N
O
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
N
N
112
N
C
N
113
N
C
N
114
N
O
N
115
N
O
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
N
N
122
S
C
N
123
N
C
N
124
N
O
N
125
N
C
Y
126
N
C
Y
127
N
N
Y
128
N
C
Y
129
N
C
Y
130
N
N
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
N
N
143
S
C
N
144
N
C
N
145
N
O
N
146
N
C
N
147
N
C
N
148
N
C
N
149
N
C
N
150
N
O
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
N
N
165
S
C
N
166
N
C
N
167
N
O
N
168
N
C
N
169
N
C
N
170
N
S
N
171
N
C
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
Y
189
N
C
Y
190
N
C
Y
191
N
C
Y
192
N
C
Y
193
N
C
Y
194
N
C
N
195
N
O
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
N
N
208
S
C
N
209
N
C
N
210
N
O
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
N
N
225
S
C
N
226
N
C
N
227
N
O
N
228
N
C
N
229
N
O
N
230
N
O
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
N
N
239
S
C
N
240
N
C
N
241
N
O
N
242
R
C
N
243
N
O
N
244
N
C
N
245
N
O
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
N
N
256
S
C
N
257
N
C
N
258
N
O
N
259
N
C
Y
260
N
C
Y
261
N
C
Y
262
N
C
Y
263
N
N
Y
264
N
C
Y
265
N
C
Y
266
N
C
Y
267
N
C
Y
268
N
C
N
269
N
O
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
doub
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
doub
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
Y
125
N
sing
Y
126
N
doub
Y
127
N
doub
N
128
N
sing
Y
129
N
sing
N
130
N
sing
Y
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
Y
186
N
doub
Y
187
N
sing
Y
188
N
sing
N
189
N
sing
Y
190
N
doub
N
191
N
sing
Y
192
N
doub
N
193
N
sing
Y
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
doub
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
doub
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
Y
255
N
doub
Y
256
N
sing
Y
257
N
sing
N
258
N
sing
Y
259
N
doub
Y
260
N
sing
Y
261
N
sing
N
262
N
sing
Y
263
N
sing
Y
264
N
doub
N
265
N
sing
Y
266
N
doub
N
267
N
sing
Y
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
278
20225
20234
10.1074/jbc.M300459200
12644454
Structure and ubiquitin interactions of the conserved zinc finger domain of Npl4.
2003
UK
Embo J.
EMJODG
0897
0261-4189
15
2181
2192
10.1093/emboj/19.10.2181
A complex of mammalian ufd1 and nlp4 links the AAA-ATPase, p97, to ubiquitin and nuclear transport
2000
UK
Embo J.
EMJODG
0897
0261-4189
21
5645
5652
10.1093/emboj/cdf579
Direct binding of ubiquitin conjugates by the mammalian p97 adapter complexes, p47 and ufd1-Npl4
2002
10.2210/pdb1nj3/pdb
pdb_00001nj3
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
3376.865
NPL4
NZF domain
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
no
no
GSTSAMWACQHCTFMNQPGTGHCEMCSLPRT
GSTSAMWACQHCTFMNQPGTGHCEMCSLPRT
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Norway rat
Rattus
Escherichia
Escherichia coli
sample
Npl4
10116
Rattus norvegicus
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
PGEX-4T
pdbx_database_related
pdbx_struct_assembly
pdbx_struct_oper_list
chem_comp_atom
chem_comp_bond
database_2
pdbx_nmr_software
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Data collection
Database references
Derived calculations
1
0
2003-04-22
1
1
2008-04-29
1
2
2011-07-13
1
3
2017-11-22
1
4
2024-05-01
_pdbx_database_related.db_id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
structurally related to rebredoxin
structurally realted to rubrerythrin
RCSB
Y
RCSB
2002-12-30
REL
REL
ZN
ZINC ION
structures with the least restraint violations,structures with the lowest energy
40
20
HNCACB
HN(CA)CO
H(CCO)NH-TOCSY
(H)C(CO)NH-TOCSY
3D_13C-separated_NOESY
3D_15N-separated_NOESY
70 mM
5.5
ambient
291
K
Inital structures from Torsion Angle Dynamics (DYANA)
were regularized with a gentle annelaing
protocol in CNS
Torsion Angle Dynamics and Simulated annealing
1
lowest energy
1mM Npl4 NZF domain, U-15N,13C; 20 mM sodium Phosphate, pH 5.5, 50mM NaCl, 5 mM BME,90% H2O, 10% D2O
90% H2O/10% D2O
BRUNGER, ADAMS, CLORE, DELANO, GROS, GROSSE-KUNSTLEVE, JIANG, KUSZEWSKI, NILGES, PANNU, READ, RICE, SIMONSON, WARREN
refinement
CNS
1.1
Guntert, P., Mumenthaler, C., Wuthrich, K.
refinement
DYANA
1.5
processing
Felix
97
data analysis
Sparky
3.106
600
Varian
INOVA
500
Varian
UNITYPLUS
ZN
32
2
ZN
ZN
32
A
GLY
1
n
1
GLY
1
A
SER
2
n
2
SER
2
A
THR
3
n
3
THR
3
A
SER
4
n
4
SER
4
A
ALA
5
n
5
ALA
5
A
MET
6
n
6
MET
6
A
TRP
7
n
7
TRP
7
A
ALA
8
n
8
ALA
8
A
CYS
9
n
9
CYS
9
A
GLN
10
n
10
GLN
10
A
HIS
11
n
11
HIS
11
A
CYS
12
n
12
CYS
12
A
THR
13
n
13
THR
13
A
PHE
14
n
14
PHE
14
A
MET
15
n
15
MET
15
A
ASN
16
n
16
ASN
16
A
GLN
17
n
17
GLN
17
A
PRO
18
n
18
PRO
18
A
GLY
19
n
19
GLY
19
A
THR
20
n
20
THR
20
A
GLY
21
n
21
GLY
21
A
HIS
22
n
22
HIS
22
A
CYS
23
n
23
CYS
23
A
GLU
24
n
24
GLU
24
A
MET
25
n
25
MET
25
A
CYS
26
n
26
CYS
26
A
SER
27
n
27
SER
27
A
LEU
28
n
28
LEU
28
A
PRO
29
n
29
PRO
29
A
ARG
30
n
30
ARG
30
A
THR
31
n
31
THR
31
A
author_defined_assembly
1
monomeric
A
CYS
9
A
SG
CYS
9
1_555
A
ZN
32
B
ZN
ZN
1_555
A
CYS
12
A
SG
CYS
12
1_555
104.4
A
CYS
9
A
SG
CYS
9
1_555
A
ZN
32
B
ZN
ZN
1_555
A
CYS
23
A
SG
CYS
23
1_555
101.2
A
CYS
12
A
SG
CYS
12
1_555
A
ZN
32
B
ZN
ZN
1_555
A
CYS
23
A
SG
CYS
23
1_555
105.8
A
CYS
9
A
SG
CYS
9
1_555
A
ZN
32
B
ZN
ZN
1_555
A
CYS
26
A
SG
CYS
26
1_555
106.0
A
CYS
12
A
SG
CYS
12
1_555
A
ZN
32
B
ZN
ZN
1_555
A
CYS
26
A
SG
CYS
26
1_555
130.3
A
CYS
23
A
SG
CYS
23
1_555
A
ZN
32
B
ZN
ZN
1_555
A
CYS
26
A
SG
CYS
26
1_555
105.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TRP
7
A
N
TRP
7
A
O
ASN
16
A
O
ASN
16
1
A
SER
2
60.43
84.61
1
A
THR
3
-129.26
-168.37
1
A
SER
4
-67.39
-80.62
1
A
HIS
11
-137.66
-59.68
1
A
THR
13
73.48
41.87
1
A
THR
20
-93.82
58.86
1
A
HIS
22
-72.65
-110.88
1
A
CYS
23
174.45
152.11
1
A
MET
25
-134.23
-62.34
1
A
SER
27
96.17
35.49
2
A
SER
4
-65.68
-77.64
2
A
HIS
11
-137.97
-57.32
2
A
THR
13
81.99
37.29
2
A
THR
20
-93.78
58.30
2
A
HIS
22
-72.82
-110.96
2
A
CYS
23
175.36
156.36
2
A
MET
25
-133.03
-59.83
2
A
SER
27
96.58
35.42
3
A
SER
2
68.03
-70.65
3
A
SER
4
-91.42
-68.89
3
A
HIS
11
-138.03
-60.26
3
A
THR
13
73.44
42.10
3
A
HIS
22
-71.45
-110.34
3
A
CYS
23
173.71
147.72
3
A
MET
25
-134.44
-63.27
3
A
SER
27
96.93
35.50
4
A
SER
4
-83.21
-76.30
4
A
HIS
11
-137.83
-58.93
4
A
THR
13
81.52
37.64
4
A
HIS
22
-72.29
-110.97
4
A
CYS
23
174.93
154.99
4
A
MET
25
-132.79
-60.20
4
A
SER
27
96.86
35.53
5
A
SER
4
-82.36
-74.44
5
A
HIS
11
-137.72
-59.26
5
A
THR
13
82.00
37.39
5
A
THR
20
-93.68
58.41
5
A
HIS
22
-72.54
-110.88
5
A
CYS
23
175.27
155.08
5
A
MET
25
-132.93
-61.16
5
A
SER
27
97.28
35.49
6
A
SER
2
60.61
103.66
6
A
SER
4
-69.02
-78.21
6
A
HIS
11
-137.42
-59.12
6
A
THR
13
81.68
37.66
6
A
THR
20
-93.62
59.08
6
A
HIS
22
-71.98
-110.70
6
A
CYS
23
174.78
153.14
6
A
MET
25
-132.65
-60.83
6
A
SER
27
95.56
35.91
7
A
SER
2
60.68
92.88
7
A
SER
4
-74.63
-79.67
7
A
HIS
11
-137.78
-59.93
7
A
THR
13
73.23
42.36
7
A
HIS
22
-71.95
-110.24
7
A
CYS
23
173.73
147.13
7
A
MET
25
-134.36
-63.54
7
A
SER
27
97.09
35.36
8
A
THR
3
60.79
111.05
8
A
SER
4
-61.24
-75.16
8
A
HIS
11
-137.74
-59.44
8
A
THR
13
81.96
37.59
8
A
HIS
22
-71.94
-110.78
8
A
CYS
23
174.79
153.71
8
A
MET
25
-132.94
-61.82
8
A
SER
27
98.22
35.26
9
A
THR
3
63.48
139.75
9
A
SER
4
-82.27
-75.91
9
A
HIS
11
-137.82
-59.34
9
A
THR
13
81.93
37.58
9
A
HIS
22
-72.15
-110.71
9
A
CYS
23
174.79
153.69
9
A
MET
25
-132.98
-61.91
9
A
SER
27
98.40
35.12
10
A
SER
4
-86.51
-76.99
10
A
HIS
11
-138.49
-59.03
10
A
THR
13
81.72
37.88
10
A
HIS
22
-72.37
-110.30
10
A
CYS
23
173.97
148.46
10
A
MET
25
-133.57
-61.55
10
A
SER
27
98.46
35.10
11
A
SER
2
-60.18
89.13
11
A
THR
3
-163.87
115.82
11
A
SER
4
-60.17
-166.53
11
A
HIS
11
-137.57
-59.72
11
A
THR
13
80.64
38.41
11
A
HIS
22
-70.62
-109.31
11
A
CYS
23
173.76
150.31
11
A
MET
25
-133.01
-60.57
11
A
SER
27
95.51
35.98
12
A
SER
4
-91.84
-76.86
12
A
HIS
11
-138.07
-58.90
12
A
THR
13
81.38
38.15
12
A
HIS
22
-72.13
-110.42
12
A
CYS
23
173.89
148.02
12
A
MET
25
-133.67
-61.49
12
A
SER
27
98.38
35.13
13
A
SER
4
-147.42
-71.34
13
A
HIS
11
-138.12
-58.44
13
A
THR
13
82.38
37.31
13
A
HIS
22
-72.24
-110.85
13
A
CYS
23
174.77
153.28
13
A
MET
25
-132.81
-61.05
13
A
SER
27
96.02
36.26
14
A
SER
4
-85.17
-76.47
14
A
HIS
11
-137.69
-59.37
14
A
THR
13
80.92
38.30
14
A
HIS
22
-71.24
-110.40
14
A
CYS
23
173.81
148.50
14
A
MET
25
-133.53
-61.18
14
A
SER
27
96.82
36.18
15
A
SER
2
60.47
109.14
15
A
THR
3
-176.54
-40.64
15
A
SER
4
-179.72
-165.26
15
A
HIS
11
-137.64
-59.72
15
A
THR
13
81.19
37.99
15
A
HIS
22
-70.82
-110.80
15
A
CYS
23
174.76
154.16
15
A
MET
25
-132.13
-59.88
15
A
SER
27
95.30
36.08
16
A
THR
3
60.57
110.68
16
A
SER
4
-82.14
-71.02
16
A
HIS
11
-137.48
-59.29
16
A
THR
13
81.07
37.90
16
A
HIS
22
-71.62
-110.76
16
A
CYS
23
174.60
153.18
16
A
MET
25
-132.43
-59.94
16
A
SER
27
95.51
35.86
17
A
THR
3
-163.61
119.01
17
A
SER
4
-59.80
-170.97
17
A
HIS
11
-137.93
-59.86
17
A
THR
13
80.85
38.42
17
A
HIS
22
-70.71
-109.31
17
A
CYS
23
173.90
151.40
17
A
MET
25
-133.50
-61.11
17
A
SER
27
97.08
35.71
18
A
SER
2
-164.68
76.78
18
A
SER
4
-155.35
-75.03
18
A
HIS
11
-138.47
-58.32
18
A
THR
13
83.01
36.63
18
A
HIS
22
-70.83
-109.85
18
A
CYS
23
173.92
158.26
18
A
MET
25
-133.02
-61.66
18
A
SER
27
96.50
36.12
19
A
THR
3
62.15
150.88
19
A
SER
4
-73.68
-77.90
19
A
HIS
11
-137.86
-59.23
19
A
THR
13
80.99
38.33
19
A
HIS
22
-71.50
-108.81
19
A
CYS
23
174.00
152.00
19
A
MET
25
-133.39
-62.07
19
A
SER
27
98.70
35.49
20
A
SER
2
-90.16
-69.33
20
A
THR
3
62.61
119.30
20
A
SER
4
-60.05
-76.19
20
A
HIS
11
-137.68
-59.15
20
A
THR
13
81.31
37.65
20
A
HIS
22
-71.56
-111.07
20
A
CYS
23
174.98
155.70
20
A
MET
25
-132.30
-59.76
20
A
SER
27
95.35
36.58
Structure and Ubiquitin Interactions of the Conserved NZF Domain of Npl4
1
N
N
2
N
N
metalc
2.423
A
CYS
9
A
SG
CYS
9
1_555
A
ZN
32
B
ZN
ZN
1_555
metalc
2.312
A
CYS
12
A
SG
CYS
12
1_555
A
ZN
32
B
ZN
ZN
1_555
metalc
2.412
A
CYS
23
A
SG
CYS
23
1_555
A
ZN
32
B
ZN
ZN
1_555
metalc
2.295
A
CYS
26
A
SG
CYS
26
1_555
A
ZN
32
B
ZN
ZN
1_555
PROTEIN BINDING
NZF domain, Npl4, rubredoxin knuckle, beta-ribbon, zinc-finger, ubiquitin, PROTEIN BINDING
NPL4_RAT
UNP
1
580
Q9ES54
TSAMWACQHCTFMNQPGTGHCEMCSLPRT
580
608
1NJ3
3
31
Q9ES54
A
1
3
31
1
cloning artifact
GLY
1
1NJ3
A
Q9ES54
UNP
1
1
cloning artifact
SER
2
1NJ3
A
Q9ES54
UNP
2
2
anti-parallel
A
TRP
7
A
TRP
7
A
ALA
8
A
ALA
8
A
MET
15
A
MET
15
A
ASN
16
A
ASN
16
BINDING SITE FOR RESIDUE ZN A 32
A
ZN
32
Software
4
A
CYS
9
A
CYS
9
4
1_555
A
CYS
12
A
CYS
12
4
1_555
A
CYS
23
A
CYS
23
4
1_555
A
CYS
26
A
CYS
26
4
1_555
1
P 1