0.009286
0.000000
0.003791
0.000000
0.026213
-0.000001
0.000000
0.000000
0.016685
0.00000
0.00000
0.00000
Kumaran, D.
Eswaramoorthy, S.
Studier, F.W.
Swaminathan, S.
0000-0002-2487-9713
Burley, S.K.
New York SGX Research Center for Structural Genomics (NYSGXRC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
112.21
90.00
107.694
38.149
64.736
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
C5 H12 O5
152.146
Xylitol
D-Xylitol
D-saccharide
US
Protein Sci.
PRCIEI
0795
0961-8368
14
719
726
10.1110/ps.041132005
15722447
Structure and mechanism of ADP-ribose-1''-monophosphatase (Appr-1''-pase), a ubiquitous cellular processing enzyme
2005
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
Mirrors
CCD
2002-09-24
BRANDEIS - B4
Si(111)
MAD
M
x-ray
1
0.979
1.0
X25
NSLS
0.979
SYNCHROTRON
NSLS BEAMLINE X25
32575.188
32.1 kDa protein in ADH3-RCA1 intergenic region
1
man
polymer
152.146
Xylitol
1
man
non-polymer
18.015
water
112
nat
water
HYPOTHETICAL PROTEIN, YMX7
no
yes
(MSE)TGSLNRHSLLNGVKK(MSE)RIILCDTNEVVTNLWQESIPHAYIQNDKYLCIHHGHLQSL(MSE)DS(MSE)RKG
DAIHHGHSYAIVSPGNSYGYLGGGFDKALYNYFGGKPFETWFRNQLGGRYHTVGSATVVDLQRCLEEKTIECRDGIRYII
HVPTVVAPSAPIFNPQNPLKTGFEPVFNA(MSE)WNAL(MSE)HSPKDIDGLIIPGLCTGYAGVPPIISCKS(MSE)AFA
LRLY(MSE)AGDHISKELKNVLI(MSE)YYLQYPFEPFFPESCKIECQKLGIDIE(MSE)LKSFNVEKDAIELLIPRRIL
TLDL
MTGSLNRHSLLNGVKKMRIILCDTNEVVTNLWQESIPHAYIQNDKYLCIHHGHLQSLMDSMRKGDAIHHGHSYAIVSPGN
SYGYLGGGFDKALYNYFGGKPFETWFRNQLGGRYHTVGSATVVDLQRCLEEKTIECRDGIRYIIHVPTVVAPSAPIFNPQ
NPLKTGFEPVFNAMWNALMHSPKDIDGLIIPGLCTGYAGVPPIISCKSMAFALRLYMAGDHISKELKNVLIMYYLQYPFE
PFFPESCKIECQKLGIDIEMLKSFNVEKDAIELLIPRRILTLDL
A
NYSGXRC-P089
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
baker's yeast
Saccharomyces
Escherichia
sample
YMR087W or YM9582.12
4932
Saccharomyces cerevisiae
562
Escherichia coli
1
1.89
34.91
High resolution data for this structure was collected at X25 of NSLS.
VAPOR DIFFUSION, SITTING DROP
5.0
PEG 6000, Citric acid, Xylitol, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
New York SGX Research Center for Structural Genomics
NYSGXRC
PSI, Protein Structure Initiative
chem_comp
entity
pdbx_entity_nonpoly
struct_conn
struct_ref_seq_dif
struct_site
struct_site_gen
audit_author
chem_comp
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Derived calculations
Version format compliance
Database references
Derived calculations
Structure summary
Structure summary
1
0
2004-08-17
1
1
2008-04-29
1
2
2011-07-13
1
3
2020-07-29
1
4
2021-02-03
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_audit_author.identifier_ORCID
_chem_comp.pdbx_synonyms
BIOMOLECULE: DIMER
THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT
WHICH CONSISTS OF 1 CHAIN. SEE REMARK 350 FOR
INFORMATION ON GENERATING THE BIOLOGICAL DIMER.
Y
RCSB
Y
RCSB
2003-01-02
REL
REL
XYL
Xylitol
HOH
water
XTL
285
2
XYL
XYL
285
A
TIP
1
3
HOH
HOH
286
A
TIP
2
3
HOH
HOH
287
A
TIP
3
3
HOH
HOH
288
A
TIP
4
3
HOH
HOH
289
A
TIP
5
3
HOH
HOH
290
A
TIP
6
3
HOH
HOH
291
A
TIP
7
3
HOH
HOH
292
A
TIP
8
3
HOH
HOH
293
A
TIP
9
3
HOH
HOH
294
A
TIP
10
3
HOH
HOH
295
A
TIP
11
3
HOH
HOH
296
A
TIP
12
3
HOH
HOH
297
A
TIP
13
3
HOH
HOH
298
A
TIP
14
3
HOH
HOH
299
A
TIP
15
3
HOH
HOH
300
A
TIP
16
3
HOH
HOH
301
A
TIP
17
3
HOH
HOH
302
A
TIP
18
3
HOH
HOH
303
A
TIP
19
3
HOH
HOH
304
A
TIP
20
3
HOH
HOH
305
A
TIP
21
3
HOH
HOH
306
A
TIP
22
3
HOH
HOH
307
A
TIP
23
3
HOH
HOH
308
A
TIP
24
3
HOH
HOH
309
A
TIP
25
3
HOH
HOH
310
A
TIP
26
3
HOH
HOH
311
A
TIP
27
3
HOH
HOH
312
A
TIP
28
3
HOH
HOH
313
A
TIP
29
3
HOH
HOH
314
A
TIP
30
3
HOH
HOH
315
A
TIP
31
3
HOH
HOH
316
A
TIP
32
3
HOH
HOH
317
A
TIP
33
3
HOH
HOH
318
A
TIP
34
3
HOH
HOH
319
A
TIP
35
3
HOH
HOH
320
A
TIP
36
3
HOH
HOH
321
A
TIP
37
3
HOH
HOH
322
A
TIP
38
3
HOH
HOH
323
A
TIP
39
3
HOH
HOH
324
A
TIP
40
3
HOH
HOH
325
A
TIP
41
3
HOH
HOH
326
A
TIP
42
3
HOH
HOH
327
A
TIP
43
3
HOH
HOH
328
A
TIP
44
3
HOH
HOH
329
A
TIP
45
3
HOH
HOH
330
A
TIP
46
3
HOH
HOH
331
A
TIP
47
3
HOH
HOH
332
A
TIP
48
3
HOH
HOH
333
A
TIP
49
3
HOH
HOH
334
A
TIP
50
3
HOH
HOH
335
A
TIP
51
3
HOH
HOH
336
A
TIP
52
3
HOH
HOH
337
A
TIP
53
3
HOH
HOH
338
A
TIP
54
3
HOH
HOH
339
A
TIP
55
3
HOH
HOH
340
A
TIP
56
3
HOH
HOH
341
A
TIP
57
3
HOH
HOH
342
A
TIP
58
3
HOH
HOH
343
A
TIP
59
3
HOH
HOH
344
A
TIP
60
3
HOH
HOH
345
A
TIP
61
3
HOH
HOH
346
A
TIP
62
3
HOH
HOH
347
A
TIP
63
3
HOH
HOH
348
A
TIP
64
3
HOH
HOH
349
A
TIP
65
3
HOH
HOH
350
A
TIP
66
3
HOH
HOH
351
A
TIP
67
3
HOH
HOH
352
A
TIP
68
3
HOH
HOH
353
A
TIP
69
3
HOH
HOH
354
A
TIP
70
3
HOH
HOH
355
A
TIP
71
3
HOH
HOH
356
A
TIP
72
3
HOH
HOH
357
A
TIP
73
3
HOH
HOH
358
A
TIP
74
3
HOH
HOH
359
A
TIP
75
3
HOH
HOH
360
A
TIP
76
3
HOH
HOH
361
A
TIP
77
3
HOH
HOH
362
A
TIP
78
3
HOH
HOH
363
A
TIP
79
3
HOH
HOH
364
A
TIP
80
3
HOH
HOH
365
A
TIP
81
3
HOH
HOH
366
A
TIP
82
3
HOH
HOH
367
A
TIP
83
3
HOH
HOH
368
A
TIP
84
3
HOH
HOH
369
A
TIP
85
3
HOH
HOH
370
A
TIP
86
3
HOH
HOH
371
A
TIP
87
3
HOH
HOH
372
A
TIP
88
3
HOH
HOH
373
A
TIP
89
3
HOH
HOH
374
A
TIP
90
3
HOH
HOH
375
A
TIP
91
3
HOH
HOH
376
A
TIP
92
3
HOH
HOH
377
A
TIP
93
3
HOH
HOH
378
A
TIP
94
3
HOH
HOH
379
A
TIP
95
3
HOH
HOH
380
A
TIP
96
3
HOH
HOH
381
A
TIP
97
3
HOH
HOH
382
A
TIP
98
3
HOH
HOH
383
A
TIP
99
3
HOH
HOH
384
A
TIP
100
3
HOH
HOH
385
A
TIP
101
3
HOH
HOH
386
A
TIP
102
3
HOH
HOH
387
A
TIP
103
3
HOH
HOH
388
A
TIP
104
3
HOH
HOH
389
A
TIP
105
3
HOH
HOH
390
A
TIP
106
3
HOH
HOH
391
A
TIP
107
3
HOH
HOH
392
A
TIP
108
3
HOH
HOH
393
A
TIP
109
3
HOH
HOH
394
A
TIP
110
3
HOH
HOH
395
A
TIP
111
3
HOH
HOH
396
A
TIP
112
3
HOH
HOH
397
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
n
11
11
A
n
12
12
A
n
13
13
A
n
14
14
A
n
15
15
A
LYS
16
n
16
LYS
16
A
MSE
17
n
17
MSE
17
A
ARG
18
n
18
ARG
18
A
ILE
19
n
19
ILE
19
A
ILE
20
n
20
ILE
20
A
LEU
21
n
21
LEU
21
A
CYS
22
n
22
CYS
22
A
ASP
23
n
23
ASP
23
A
THR
24
n
24
THR
24
A
ASN
25
n
25
ASN
25
A
GLU
26
n
26
GLU
26
A
VAL
27
n
27
VAL
27
A
VAL
28
n
28
VAL
28
A
THR
29
n
29
THR
29
A
ASN
30
n
30
ASN
30
A
LEU
31
n
31
LEU
31
A
TRP
32
n
32
TRP
32
A
GLN
33
n
33
GLN
33
A
GLU
34
n
34
GLU
34
A
SER
35
n
35
SER
35
A
ILE
36
n
36
ILE
36
A
PRO
37
n
37
PRO
37
A
n
38
38
A
n
39
39
A
n
40
40
A
n
41
41
A
n
42
42
A
n
43
43
A
n
44
44
A
LYS
45
n
45
LYS
45
A
TYR
46
n
46
TYR
46
A
LEU
47
n
47
LEU
47
A
CYS
48
n
48
CYS
48
A
ILE
49
n
49
ILE
49
A
HIS
50
n
50
HIS
50
A
HIS
51
n
51
HIS
51
A
GLY
52
n
52
GLY
52
A
HIS
53
n
53
HIS
53
A
LEU
54
n
54
LEU
54
A
GLN
55
n
55
GLN
55
A
SER
56
n
56
SER
56
A
LEU
57
n
57
LEU
57
A
MSE
58
n
58
MSE
58
A
ASP
59
n
59
ASP
59
A
SER
60
n
60
SER
60
A
MSE
61
n
61
MSE
61
A
ARG
62
n
62
ARG
62
A
LYS
63
n
63
LYS
63
A
GLY
64
n
64
GLY
64
A
ASP
65
n
65
ASP
65
A
ALA
66
n
66
ALA
66
A
n
67
67
A
n
68
68
A
n
69
69
A
n
70
70
A
HIS
71
n
71
HIS
71
A
SER
72
n
72
SER
72
A
TYR
73
n
73
TYR
73
A
ALA
74
n
74
ALA
74
A
ILE
75
n
75
ILE
75
A
VAL
76
n
76
VAL
76
A
SER
77
n
77
SER
77
A
PRO
78
n
78
PRO
78
A
GLY
79
n
79
GLY
79
A
ASN
80
n
80
ASN
80
A
SER
81
n
81
SER
81
A
TYR
82
n
82
TYR
82
A
GLY
83
n
83
GLY
83
A
TYR
84
n
84
TYR
84
A
LEU
85
n
85
LEU
85
A
GLY
86
n
86
GLY
86
A
GLY
87
n
87
GLY
87
A
GLY
88
n
88
GLY
88
A
PHE
89
n
89
PHE
89
A
ASP
90
n
90
ASP
90
A
LYS
91
n
91
LYS
91
A
ALA
92
n
92
ALA
92
A
LEU
93
n
93
LEU
93
A
TYR
94
n
94
TYR
94
A
ASN
95
n
95
ASN
95
A
TYR
96
n
96
TYR
96
A
PHE
97
n
97
PHE
97
A
GLY
98
n
98
GLY
98
A
GLY
99
n
99
GLY
99
A
LYS
100
n
100
LYS
100
A
PRO
101
n
101
PRO
101
A
PHE
102
n
102
PHE
102
A
GLU
103
n
103
GLU
103
A
THR
104
n
104
THR
104
A
TRP
105
n
105
TRP
105
A
PHE
106
n
106
PHE
106
A
ARG
107
n
107
ARG
107
A
ASN
108
n
108
ASN
108
A
GLN
109
n
109
GLN
109
A
LEU
110
n
110
LEU
110
A
GLY
111
n
111
GLY
111
A
GLY
112
n
112
GLY
112
A
ARG
113
n
113
ARG
113
A
TYR
114
n
114
TYR
114
A
HIS
115
n
115
HIS
115
A
THR
116
n
116
THR
116
A
VAL
117
n
117
VAL
117
A
GLY
118
n
118
GLY
118
A
SER
119
n
119
SER
119
A
ALA
120
n
120
ALA
120
A
THR
121
n
121
THR
121
A
VAL
122
n
122
VAL
122
A
VAL
123
n
123
VAL
123
A
ASP
124
n
124
ASP
124
A
LEU
125
n
125
LEU
125
A
GLN
126
n
126
GLN
126
A
ARG
127
n
127
ARG
127
A
CYS
128
n
128
CYS
128
A
LEU
129
n
129
LEU
129
A
GLU
130
n
130
GLU
130
A
n
131
131
A
n
132
132
A
n
133
133
A
n
134
134
A
GLU
135
n
135
GLU
135
A
CYS
136
n
136
CYS
136
A
ARG
137
n
137
ARG
137
A
ASP
138
n
138
ASP
138
A
GLY
139
n
139
GLY
139
A
ILE
140
n
140
ILE
140
A
ARG
141
n
141
ARG
141
A
TYR
142
n
142
TYR
142
A
ILE
143
n
143
ILE
143
A
ILE
144
n
144
ILE
144
A
HIS
145
n
145
HIS
145
A
VAL
146
n
146
VAL
146
A
PRO
147
n
147
PRO
147
A
THR
148
n
148
THR
148
A
VAL
149
n
149
VAL
149
A
VAL
150
n
150
VAL
150
A
ALA
151
n
151
ALA
151
A
PRO
152
n
152
PRO
152
A
SER
153
n
153
SER
153
A
ALA
154
n
154
ALA
154
A
PRO
155
n
155
PRO
155
A
ILE
156
n
156
ILE
156
A
PHE
157
n
157
PHE
157
A
ASN
158
n
158
ASN
158
A
PRO
159
n
159
PRO
159
A
GLN
160
n
160
GLN
160
A
ASN
161
n
161
ASN
161
A
PRO
162
n
162
PRO
162
A
LEU
163
n
163
LEU
163
A
LYS
164
n
164
LYS
164
A
THR
165
n
165
THR
165
A
GLY
166
n
166
GLY
166
A
PHE
167
n
167
PHE
167
A
GLU
168
n
168
GLU
168
A
PRO
169
n
169
PRO
169
A
VAL
170
n
170
VAL
170
A
PHE
171
n
171
PHE
171
A
ASN
172
n
172
ASN
172
A
ALA
173
n
173
ALA
173
A
MSE
174
n
174
MSE
174
A
TRP
175
n
175
TRP
175
A
ASN
176
n
176
ASN
176
A
ALA
177
n
177
ALA
177
A
LEU
178
n
178
LEU
178
A
MSE
179
n
179
MSE
179
A
HIS
180
n
180
HIS
180
A
SER
181
n
181
SER
181
A
PRO
182
n
182
PRO
182
A
LYS
183
n
183
LYS
183
A
ASP
184
n
184
ASP
184
A
ILE
185
n
185
ILE
185
A
ASP
186
n
186
ASP
186
A
GLY
187
n
187
GLY
187
A
LEU
188
n
188
LEU
188
A
ILE
189
n
189
ILE
189
A
ILE
190
n
190
ILE
190
A
PRO
191
n
191
PRO
191
A
GLY
192
n
192
GLY
192
A
LEU
193
n
193
LEU
193
A
CYS
194
n
194
CYS
194
A
THR
195
n
195
THR
195
A
GLY
196
n
196
GLY
196
A
TYR
197
n
197
TYR
197
A
ALA
198
n
198
ALA
198
A
GLY
199
n
199
GLY
199
A
VAL
200
n
200
VAL
200
A
PRO
201
n
201
PRO
201
A
PRO
202
n
202
PRO
202
A
ILE
203
n
203
ILE
203
A
ILE
204
n
204
ILE
204
A
SER
205
n
205
SER
205
A
CYS
206
n
206
CYS
206
A
LYS
207
n
207
LYS
207
A
SER
208
n
208
SER
208
A
MSE
209
n
209
MSE
209
A
ALA
210
n
210
ALA
210
A
PHE
211
n
211
PHE
211
A
ALA
212
n
212
ALA
212
A
LEU
213
n
213
LEU
213
A
ARG
214
n
214
ARG
214
A
LEU
215
n
215
LEU
215
A
TYR
216
n
216
TYR
216
A
MSE
217
n
217
MSE
217
A
ALA
218
n
218
ALA
218
A
GLY
219
n
219
GLY
219
A
ASP
220
n
220
ASP
220
A
HIS
221
n
221
HIS
221
A
ILE
222
n
222
ILE
222
A
SER
223
n
223
SER
223
A
LYS
224
n
224
LYS
224
A
GLU
225
n
225
GLU
225
A
LEU
226
n
226
LEU
226
A
LYS
227
n
227
LYS
227
A
ASN
228
n
228
ASN
228
A
VAL
229
n
229
VAL
229
A
LEU
230
n
230
LEU
230
A
ILE
231
n
231
ILE
231
A
MSE
232
n
232
MSE
232
A
TYR
233
n
233
TYR
233
A
TYR
234
n
234
TYR
234
A
LEU
235
n
235
LEU
235
A
GLN
236
n
236
GLN
236
A
TYR
237
n
237
TYR
237
A
PRO
238
n
238
PRO
238
A
PHE
239
n
239
PHE
239
A
GLU
240
n
240
GLU
240
A
PRO
241
n
241
PRO
241
A
PHE
242
n
242
PHE
242
A
PHE
243
n
243
PHE
243
A
PRO
244
n
244
PRO
244
A
GLU
245
n
245
GLU
245
A
SER
246
n
246
SER
246
A
CYS
247
n
247
CYS
247
A
LYS
248
n
248
LYS
248
A
ILE
249
n
249
ILE
249
A
GLU
250
n
250
GLU
250
A
CYS
251
n
251
CYS
251
A
GLN
252
n
252
GLN
252
A
LYS
253
n
253
LYS
253
A
LEU
254
n
254
LEU
254
A
GLY
255
n
255
GLY
255
A
ILE
256
n
256
ILE
256
A
ASP
257
n
257
ASP
257
A
ILE
258
n
258
ILE
258
A
GLU
259
n
259
GLU
259
A
MSE
260
n
260
MSE
260
A
LEU
261
n
261
LEU
261
A
LYS
262
n
262
LYS
262
A
SER
263
n
263
SER
263
A
PHE
264
n
264
PHE
264
A
ASN
265
n
265
ASN
265
A
VAL
266
n
266
VAL
266
A
GLU
267
n
267
GLU
267
A
LYS
268
n
268
LYS
268
A
ASP
269
n
269
ASP
269
A
ALA
270
n
270
ALA
270
A
ILE
271
n
271
ILE
271
A
GLU
272
n
272
GLU
272
A
LEU
273
n
273
LEU
273
A
LEU
274
n
274
LEU
274
A
ILE
275
n
275
ILE
275
A
PRO
276
n
276
PRO
276
A
ARG
277
n
277
ARG
277
A
ARG
278
n
278
ARG
278
A
ILE
279
n
279
ILE
279
A
n
280
280
A
n
281
281
A
n
282
282
A
n
283
283
A
n
284
284
A
author_and_software_defined_assembly
PISA,PQS
2
dimeric
3660
-16
21860
A
MSE
17
SELENOMETHIONINE
A
MSE
17
MET
A
MSE
58
SELENOMETHIONINE
A
MSE
58
MET
A
MSE
61
SELENOMETHIONINE
A
MSE
61
MET
A
MSE
174
SELENOMETHIONINE
A
MSE
174
MET
A
MSE
179
SELENOMETHIONINE
A
MSE
179
MET
A
MSE
209
SELENOMETHIONINE
A
MSE
209
MET
A
MSE
217
SELENOMETHIONINE
A
MSE
217
MET
A
MSE
232
SELENOMETHIONINE
A
MSE
232
MET
A
MSE
260
SELENOMETHIONINE
A
MSE
260
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_655
-x+1,y,-z
crystal symmetry operation
107.6940000000
0.0000000000
0.0000000000
A
O
CYS
48
A
O
CYS
48
A
N
LEU
21
A
N
LEU
21
A
N
ILE
20
A
N
ILE
20
A
O
LEU
188
A
O
LEU
188
A
O
ILE
189
A
O
ILE
189
A
N
ALA
74
A
N
ALA
74
A
N
ILE
75
A
N
ILE
75
A
O
ILE
144
A
O
ILE
144
A
O
HIS
145
A
O
HIS
145
A
N
THR
121
A
N
THR
121
1
A
MSE
1
A
MSE
1
1
Y
1
A
THR
2
A
THR
2
1
Y
1
A
GLY
3
A
GLY
3
1
Y
1
A
SER
4
A
SER
4
1
Y
1
A
LEU
5
A
LEU
5
1
Y
1
A
ASN
6
A
ASN
6
1
Y
1
A
ARG
7
A
ARG
7
1
Y
1
A
HIS
8
A
HIS
8
1
Y
1
A
SER
9
A
SER
9
1
Y
1
A
LEU
10
A
LEU
10
1
Y
1
A
LEU
11
A
LEU
11
1
Y
1
A
ASN
12
A
ASN
12
1
Y
1
A
GLY
13
A
GLY
13
1
Y
1
A
VAL
14
A
VAL
14
1
Y
1
A
LYS
15
A
LYS
15
1
Y
1
A
HIS
38
A
HIS
38
1
Y
1
A
ALA
39
A
ALA
39
1
Y
1
A
TYR
40
A
TYR
40
1
Y
1
A
ILE
41
A
ILE
41
1
Y
1
A
GLN
42
A
GLN
42
1
Y
1
A
ASN
43
A
ASN
43
1
Y
1
A
ASP
44
A
ASP
44
1
Y
1
A
ILE
67
A
ILE
67
1
Y
1
A
HIS
68
A
HIS
68
1
Y
1
A
HIS
69
A
HIS
69
1
Y
1
A
GLY
70
A
GLY
70
1
Y
1
A
GLU
131
A
GLU
131
1
Y
1
A
LYS
132
A
LYS
132
1
Y
1
A
THR
133
A
THR
133
1
Y
1
A
ILE
134
A
ILE
134
1
Y
1
A
LEU
280
A
LEU
280
1
Y
1
A
THR
281
A
THR
281
1
Y
1
A
LEU
282
A
LEU
282
1
Y
1
A
ASP
283
A
ASP
283
1
Y
1
A
LEU
284
A
LEU
284
1
Y
1
A
PRO
78
-92.54
57.36
1
A
ASP
138
57.51
-156.48
1
A
PRO
152
-76.59
48.36
1
A
CYS
194
58.58
18.16
0.23
0.206
1.9
50.0
1288
18720
18720
96.0
random
1
isotropic
THROUGHOUT
0.0
MAD
Engh & Huber
1.9
50.0
112
2099
10
0
1977
0.01
1.201
46.9
1.9
50
1NJR
18988
18988
0.0
0.0
0.117
1
18.3
7.0
97.8
0.266
1.9
1.97
1620
1
84
data collection
MARMAD
data reduction
HKL-2000
phasing
SOLVE
phasing
SHARP
model building
DM
refinement
CNS
data reduction
MARMAD
data scaling
HKL-2000
phasing
DM
32.1 kDa protein in ADH3-RCA1 intergenic region
Crystal structure of yeast ymx7, an ADP-ribose-1''-monophosphatase
1
N
N
2
N
N
3
N
N
The second part of the biological assembly is generated
by the crystallographic two fold axis
A
ASN
25
A
ASN
25
HELX_P
A
ILE
36
A
ILE
36
1
1
12
A
HIS
53
A
HIS
53
HELX_P
A
LYS
63
A
LYS
63
1
2
11
A
GLY
88
A
GLY
88
HELX_P
A
GLY
98
A
GLY
98
1
3
11
A
GLY
99
A
GLY
99
HELX_P
A
LEU
110
A
LEU
110
1
4
12
A
GLN
126
A
GLN
126
HELX_P
A
GLU
130
A
GLU
130
5
5
5
A
ASN
161
A
ASN
161
HELX_P
A
GLY
166
A
GLY
166
1
6
6
A
GLY
166
A
GLY
166
HELX_P
A
HIS
180
A
HIS
180
1
7
15
A
PRO
201
A
PRO
201
HELX_P
A
ALA
218
A
ALA
218
1
8
18
A
GLY
219
A
GLY
219
HELX_P
A
ILE
222
A
ILE
222
5
9
4
A
SER
223
A
SER
223
HELX_P
A
LEU
235
A
LEU
235
1
10
13
A
PHE
239
A
PHE
239
HELX_P
A
PHE
243
A
PHE
243
5
11
5
A
PRO
244
A
PRO
244
HELX_P
A
GLY
255
A
GLY
255
1
12
12
A
ASP
257
A
ASP
257
HELX_P
A
SER
263
A
SER
263
1
13
7
A
ALA
270
A
ALA
270
HELX_P
A
LEU
274
A
LEU
274
5
14
5
disulf
2.036
A
CYS
128
A
SG
CYS
128
1_555
A
CYS
136
A
SG
CYS
136
1_555
covale
1.330
both
A
LYS
16
A
C
LYS
16
1_555
A
MSE
17
A
N
MSE
17
1_555
covale
1.325
both
A
MSE
17
A
C
MSE
17
1_555
A
ARG
18
A
N
ARG
18
1_555
covale
1.329
both
A
LEU
57
A
C
LEU
57
1_555
A
MSE
58
A
N
MSE
58
1_555
covale
1.331
both
A
MSE
58
A
C
MSE
58
1_555
A
ASP
59
A
N
ASP
59
1_555
covale
1.330
both
A
SER
60
A
C
SER
60
1_555
A
MSE
61
A
N
MSE
61
1_555
covale
1.328
both
A
MSE
61
A
C
MSE
61
1_555
A
ARG
62
A
N
ARG
62
1_555
covale
1.333
both
A
ALA
173
A
C
ALA
173
1_555
A
MSE
174
A
N
MSE
174
1_555
covale
1.332
both
A
MSE
174
A
C
MSE
174
1_555
A
TRP
175
A
N
TRP
175
1_555
covale
1.329
both
A
LEU
178
A
C
LEU
178
1_555
A
MSE
179
A
N
MSE
179
1_555
covale
1.331
both
A
MSE
179
A
C
MSE
179
1_555
A
HIS
180
A
N
HIS
180
1_555
covale
1.326
both
A
SER
208
A
C
SER
208
1_555
A
MSE
209
A
N
MSE
209
1_555
covale
1.330
both
A
MSE
209
A
C
MSE
209
1_555
A
ALA
210
A
N
ALA
210
1_555
covale
1.330
both
A
TYR
216
A
C
TYR
216
1_555
A
MSE
217
A
N
MSE
217
1_555
covale
1.327
both
A
MSE
217
A
C
MSE
217
1_555
A
ALA
218
A
N
ALA
218
1_555
covale
1.327
both
A
ILE
231
A
C
ILE
231
1_555
A
MSE
232
A
N
MSE
232
1_555
covale
1.328
both
A
MSE
232
A
C
MSE
232
1_555
A
TYR
233
A
N
TYR
233
1_555
covale
1.329
both
A
GLU
259
A
C
GLU
259
1_555
A
MSE
260
A
N
MSE
260
1_555
covale
1.328
both
A
MSE
260
A
C
MSE
260
1_555
A
LEU
261
A
N
LEU
261
1_555
STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Structural Genomics, Dimer, Two domain organization, PSI, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC, UNKNOWN FUNCTION
YMX7_YEAST
UNP
1
1
Q04299
MTGSLNRHSLLNGVKKMRIILCDTNEVVTNLWQESIPHAYIQNDKYLCIHHGHLQSLMDSMRKGDAIHHGHSYAIVSPGN
SYGYLGGGFDKALYNYFGGKPFETWFRNQLGGRYHTVGSATVVDLQRCLEEKTIECRDGIRYIIHVPTVVAPSAPIFNPQ
NPLKTGFEPVFNAMWNALMHSPKDIDGLIIPGLCTGYAGVPPIISCKSMAFALRLYMAGDHISKELKNVLIMYYLQYPFE
PFFPESCKIECQKLGIDIEMLKSFNVEKDAIELLIPRRILTLDL
1
284
1NJR
1
284
Q04299
A
1
1
284
1
MET
modified residue
MSE
1
1NJR
A
Q04299
UNP
1
1
1
MET
modified residue
MSE
17
1NJR
A
Q04299
UNP
17
17
1
MET
modified residue
MSE
58
1NJR
A
Q04299
UNP
58
58
1
MET
modified residue
MSE
61
1NJR
A
Q04299
UNP
61
61
1
MET
modified residue
MSE
174
1NJR
A
Q04299
UNP
174
174
1
MET
modified residue
MSE
179
1NJR
A
Q04299
UNP
179
179
1
MET
modified residue
MSE
209
1NJR
A
Q04299
UNP
209
209
1
MET
modified residue
MSE
217
1NJR
A
Q04299
UNP
217
217
1
MET
modified residue
MSE
232
1NJR
A
Q04299
UNP
232
232
1
MET
modified residue
MSE
260
1NJR
A
Q04299
UNP
260
260
6
parallel
parallel
parallel
parallel
anti-parallel
A
LEU
47
A
LEU
47
A
HIS
51
A
HIS
51
A
ARG
18
A
ARG
18
A
ASP
23
A
ASP
23
A
GLY
187
A
GLY
187
A
ILE
190
A
ILE
190
A
TYR
73
A
TYR
73
A
SER
77
A
SER
77
A
ILE
140
A
ILE
140
A
HIS
145
A
HIS
145
A
THR
121
A
THR
121
A
ASP
124
A
ASP
124
5
C 1 2 1