0.011443
0.000000
0.000000
0.000000
0.010704
0.000000
0.000000
0.000000
0.009461
0.00000
0.00000
0.00000
Johnson, S.J.
Beese, L.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
87.389
93.419
105.697
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C6 H12 O6
180.156
beta-D-fructofuranose
beta-D-fructose; D-fructose; fructose
D-saccharide, beta linking
C6 H12 O6
180.156
alpha-D-glucopyranose
alpha-D-glucose; D-glucose; glucose
D-saccharide, alpha linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
C
N
232
R
C
N
233
S
C
N
234
S
C
N
235
R
C
N
236
N
C
N
237
N
O
N
238
N
O
N
239
N
O
N
240
N
O
N
241
N
O
N
242
N
O
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
S
C
N
256
R
C
N
257
S
C
N
258
S
C
N
259
R
C
N
260
N
C
N
261
N
O
N
262
N
O
N
263
N
O
N
264
N
O
N
265
N
O
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
N
N
280
S
C
N
281
N
C
N
282
N
O
N
283
N
C
N
284
N
C
N
285
N
C
N
286
N
O
N
287
N
N
N
288
N
O
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
N
N
300
S
C
N
301
N
C
N
302
N
O
N
303
N
C
N
304
N
C
N
305
N
C
N
306
N
O
N
307
N
O
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
N
C
N
320
N
C
N
321
N
O
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
N
C
Y
333
N
C
Y
334
N
N
Y
335
N
C
Y
336
N
C
Y
337
N
N
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
S
C
N
357
N
C
N
358
N
C
N
359
N
C
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
N
C
N
379
N
C
N
380
N
C
N
381
N
C
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
N
N
397
S
C
N
398
N
C
N
399
N
O
N
400
N
C
N
401
N
C
N
402
N
C
N
403
N
C
N
404
N
N
N
405
N
O
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
N
N
422
S
C
N
423
N
C
N
424
N
O
N
425
N
C
N
426
N
C
N
427
N
S
N
428
N
C
N
429
N
O
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
MG
N
442
N
N
N
443
S
C
N
444
N
C
N
445
N
O
N
446
N
C
Y
447
N
C
Y
448
N
C
Y
449
N
C
Y
450
N
C
Y
451
N
C
Y
452
N
C
N
453
N
O
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
N
N
466
S
C
N
467
N
C
N
468
N
O
N
469
N
C
N
470
N
C
N
471
N
C
N
472
N
O
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
N
N
483
S
C
N
484
N
C
N
485
N
O
N
486
N
C
N
487
N
O
N
488
N
O
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
S
N
497
N
O
N
498
N
O
N
499
N
O
N
500
N
O
N
501
N
N
N
502
S
C
N
503
N
C
N
504
N
O
N
505
R
C
N
506
N
O
N
507
N
C
N
508
N
O
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
N
N
519
S
C
N
520
N
C
N
521
N
O
N
522
N
C
Y
523
N
C
Y
524
N
C
Y
525
N
C
Y
526
N
N
Y
527
N
C
Y
528
N
C
Y
529
N
C
Y
530
N
C
Y
531
N
C
N
532
N
O
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
N
N
546
S
C
N
547
N
C
N
548
N
O
N
549
N
C
Y
550
N
C
Y
551
N
C
Y
552
N
C
Y
553
N
C
Y
554
N
C
Y
555
N
C
N
556
N
O
N
557
N
O
N
558
N
H
N
559
N
H
N
560
N
H
N
561
N
H
N
562
N
H
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
H
N
568
N
H
N
569
N
N
N
570
S
C
N
571
N
C
N
572
N
O
N
573
N
C
N
574
N
C
N
575
N
C
N
576
N
O
N
577
N
H
N
578
N
H
N
579
N
H
N
580
N
H
N
581
N
H
N
582
N
H
N
583
N
H
N
584
N
H
N
585
N
H
N
586
N
H
N
587
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
doub
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
Y
337
N
sing
Y
338
N
doub
Y
339
N
doub
N
340
N
sing
Y
341
N
sing
N
342
N
sing
Y
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
doub
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
doub
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
doub
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
doub
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
doub
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
Y
445
N
doub
Y
446
N
sing
Y
447
N
sing
N
448
N
sing
Y
449
N
doub
N
450
N
sing
Y
451
N
doub
N
452
N
sing
Y
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
doub
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
doub
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
doub
N
488
N
doub
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
doub
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
doub
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
Y
518
N
doub
Y
519
N
sing
Y
520
N
sing
N
521
N
sing
Y
522
N
doub
Y
523
N
sing
Y
524
N
sing
N
525
N
sing
Y
526
N
sing
Y
527
N
doub
N
528
N
sing
Y
529
N
doub
N
530
N
sing
Y
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
doub
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
Y
546
N
doub
Y
547
N
sing
Y
548
N
sing
N
549
N
sing
Y
550
N
doub
N
551
N
sing
Y
552
N
doub
N
553
N
sing
Y
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
sing
N
563
N
sing
N
564
N
sing
N
565
N
doub
N
566
N
sing
N
567
N
sing
N
568
N
sing
N
569
N
sing
N
570
N
sing
N
571
N
sing
N
572
N
sing
N
573
N
sing
N
574
N
sing
N
575
N
sing
N
576
N
sing
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
116
803
816
10.1016/S0092-8674(04)00252-1
15035983
Structures of mismatch replication errors observed in a DNA polymerase.
2004
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
100
3895
3900
10.1073/pnas.0630532100
12649320
Processive DNA synthesis observed in a polymerase crystal suggests a mechanism for the prevention of frameshift mutations.
2003
UK
Nature
NATUAS
0006
0028-0836
391
304
307
10.1038/34693
Visualizing DNA Replication in a Catalytically Active Bacillus DNA Polymerase Crystal
1998
UK
Structure
STRUE6
2005
0969-2126
5
95
108
10.1016/S0969-2126(97)00169-X
Crystal Structure of a Thermostable Bacillus DNA Polymerase I Large Fragment at 2.1 A Resolution
1997
10.2210/pdb1nk9/pdb
pdb_00001nk9
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
MIRRORS
IMAGE PLATE
1998-12-30
RIGAKU RAXIS IV
NI FILTER
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
3688.405
DNA PRIMER STRAND
1
syn
polymer
4600.983
DNA TEMPLATE STRAND
1
syn
polymer
66172.844
DNA POLYMERASE I
2.7.7.7
BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT)
1
man
polymer
342.297
beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
2
man
branched
96.063
SULFATE ION
3
syn
non-polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
18.015
water
423
nat
water
sucrose
EC 2.7.7.7
no
no
(DG)(DC)(DG)(DA)(DT)(DC)(DA)(DG)(DC)(DG)(DC)(DG)
GCGATCAGCGCG
B
polydeoxyribonucleotide
no
no
(DG)(DT)(DA)(DC)(DG)(DT)(DG)(DC)(DT)(DG)(DA)(DT)(DC)(DG)(DC)
GTACGTGCTGATCGC
C
polydeoxyribonucleotide
no
no
AKMAFTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKKSMFDSKRA
AVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWE
LERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGV
ILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRL
SSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDE
VTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDI
TSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV
TLRVPLKVDYHYGSTWYDAK
AKMAFTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKKSMFDSKRA
AVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWE
LERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGV
ILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRL
SSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDE
VTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDI
TSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV
TLRVPLKVDYHYGSTWYDAK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
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n
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n
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n
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n
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n
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n
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n
Geobacillus
Escherichia
sample
1422
Geobacillus stearothermophilus
562
Escherichia coli
BL21(DE3)PLYSS
PLASMID
PET-30A(+)
1
2.74
54.77
VAPOR DIFFUSION, HANGING DROP
5.80
AMMONIUM SULFATE, MAGNESIUM SULFATE, MPD, MES, pH 5.80, VAPOR DIFFUSION, HANGING DROP, temperature 290K
290
AMMONIUM SULFATE
1
MAGNESIUM SULFATE
1
MPD
1
MES
1
water
1
AMMONIUM SULFATE
2
MAGNESIUM SULFATE
2
MPD
-2.816
1
19
B
18
C
15
-4.235
B_DG18:DC15_C
1
-10.312
-0.493
-0.654
-0.112
15.560
1
B
19
C
14
7.185
B_DC19:DG14_C
2
-29.141
0.216
0.239
0.161
6.810
1
19
B
20
C
13
-4.600
B_DG20:DC13_C
3
-11.656
0.363
0.100
0.255
5.394
B
21
C
12
8.627
B_DA21:DT12_C
4
-19.298
-0.480
0.350
0.272
0.371
1
20
B
22
C
11
6.735
B_DT22:DA11_C
5
-13.380
-0.604
-0.163
-0.266
-6.561
1
19
B
23
C
10
2.513
B_DC23:DG10_C
6
-11.271
-0.137
0.169
0.229
3.916
1
20
B
24
C
9
3.601
B_DA24:DT9_C
7
-17.829
-0.098
0.169
-0.120
-3.326
1
19
B
25
C
8
-1.856
B_DG25:DC8_C
8
-1.662
-0.324
-0.040
-0.030
1.654
1
19
B
26
C
7
2.694
B_DC26:DG7_C
9
2.353
0.476
-0.341
-0.061
-17.651
1
B
27
C
6
-2.707
B_DG27:DT6_C
10
-3.550
1.906
-0.705
-0.004
5.167
1
19
B
28
C
5
3.065
B_DC28:DG5_C
11
-10.826
0.119
-0.192
-0.209
12.822
1
19
B
29
C
4
-5.475
B_DG29:DC4_C
12
-3.485
-0.475
-0.200
-0.263
2.695
40.402
B
B
18
19
-10.858
C
C
15
14
2.928
-7.446
-0.202
1.083
BB_DG18DC19:DG14DC15_CC
1
-4.268
6.223
39.517
2.296
-0.125
3.539
37.062
B
B
19
20
10.568
C
C
14
13
3.526
6.681
0.238
0.342
BB_DC19DG20:DC13DG14_CC
2
1.737
-2.747
36.436
-0.438
-0.120
3.061
31.722
B
B
20
21
3.939
C
C
13
12
3.125
2.149
0.367
-0.284
BB_DG20DA21:DT12DC13_CC
3
-2.586
4.740
31.548
-0.894
-1.123
3.297
33.860
B
B
21
22
-3.308
C
C
12
11
3.298
-1.924
-0.468
-0.680
BB_DA21DT22:DA11DT12_CC
4
2.050
-3.523
33.746
-0.854
1.137
3.388
37.907
B
B
22
23
-0.270
C
C
11
10
3.403
-0.175
0.067
-0.384
BB_DT22DC23:DG10DA11_CC
5
-3.121
4.810
37.783
-0.568
-0.518
3.091
35.849
B
B
23
24
17.266
C
C
10
9
3.105
10.482
0.149
0.406
BB_DC23DA24:DT9DG10_CC
6
-0.280
0.461
34.330
-0.798
-0.281
3.346
30.693
B
B
24
25
5.869
C
C
9
8
3.419
3.101
0.092
-0.577
BB_DA24DG25:DC8DT9_CC
7
0.260
-0.491
30.539
-1.721
-0.122
3.174
35.880
B
B
25
26
14.020
C
C
8
7
3.317
8.549
0.649
-0.414
BB_DG25DC26:DG7DC8_CC
8
3.060
-5.019
34.749
-1.908
-0.612
3.823
43.616
B
B
26
27
13.870
C
C
7
6
3.927
10.218
-1.125
-0.134
BB_DC26DG27:DT6DG7_CC
9
-1.092
1.482
42.445
-1.361
1.388
2.171
21.935
B
B
27
28
29.097
C
C
6
5
2.892
10.614
0.136
-0.748
BB_DG27DC28:DG5DT6_CC
10
-0.948
2.599
19.201
-5.363
-0.661
2.776
31.353
B
B
28
29
25.411
C
C
5
4
3.310
13.279
-0.613
-0.683
BB_DC28DG29:DC4DG5_CC
11
-4.022
7.697
28.185
-3.722
0.390
atom_site
chem_comp
entity
entity_name_com
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_molecule_features
pdbx_nonpoly_scheme
pdbx_struct_conn_angle
struct_conn
struct_conn_type
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Version format compliance
Atomic model
Data collection
Derived calculations
Non-polymer description
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2004-03-30
1
1
2008-04-29
1
2
2011-07-13
2
0
2020-07-29
2
1
2023-08-16
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.type_symbol
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.id
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.type
_entity.formula_weight
_entity.pdbx_description
_entity.type
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
D
SUC
901
n
D
GLC
1
D
SUC
901
n
D
FRU
2
D
SUC
902
n
E
GLC
1
D
SUC
902
n
E
FRU
2
DFrufb
b-D-fructofuranose
b-D-Fruf
Fru
DGlcpa
a-D-glucopyranose
a-D-Glcp
Glc
GUANINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE
THYMINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE
THYMINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE
CYTOSINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE
ADENINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE
GUANINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE
ADENINE-ADENINE MISMATCH AT THE POLYMERASE ACTIVE SITE
CYTOSINE-CYTOSINE MISMATCH AT THE POLYMERASE ACTIVE SITE
GUANINE-ADENINE MISMATCH AT THE POLYMERASE ACTIVE SITE
A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER A SINGLE ROUND OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP.
A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER THREE ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP, DGTP, AND DTTP.
A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER FIVE ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP, DGTP, DTTP, AND DATP.
A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A CYTOSINE-THYMINE MISMATCH AFTER A SINGLE ROUND OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP.
RCSB
Y
RCSB
2003-01-02
REL
REL
oligosaccharide
DFrufb2-1DGlcpa
4
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/2,2,1/[ha122h-2b_2-5][a2122h-1a_1-5]/1-2/a2-b1
4
PDB2Glycan
1.1.0
WURCS
[][b-D-Fruf]{[(2+1)][a-D-Glcp]{}}
4
PDB-CARE
LINUCS
C1
O2
GLC
FRU
1
2
4
O1
HO2
sing
n
n
SO4
SULFATE ION
MG
MAGNESIUM ION
HOH
water
THE POLYMERASE ADOPTS A DISTORTED OPEN CONFORMATION
WITH A GUANINE-THYMINE MISMATCH BOUND AT THE N-3 POSITION.
THE MISMATCH ADOPTS A "REVERSE" WOBBLE CONFORMATION.
2BDP
PDB ENTRY 2BDP
PDB
experimental model
Nutrient
oligosaccharide with reducing-end-to-reducing-end glycosidic bond
sucrose
Oligosaccharide
SO4
910
5
SO4
SO4
910
A
SO4
911
5
SO4
SO4
911
A
SO4
912
5
SO4
SO4
912
A
MG
950
6
MG
MG
950
A
WAT
1013
7
HOH
HOH
1013
B
WAT
1018
7
HOH
HOH
1018
B
WAT
2060
7
HOH
HOH
2060
B
WAT
2285
7
HOH
HOH
2285
B
WAT
2783
7
HOH
HOH
2783
B
WAT
2790
7
HOH
HOH
2790
B
WAT
2821
7
HOH
HOH
2821
B
WAT
2957
7
HOH
HOH
2957
B
WAT
2972
7
HOH
HOH
2972
B
WAT
2983
7
HOH
HOH
2983
B
WAT
3039
7
HOH
HOH
3039
B
WAT
1007
7
HOH
HOH
1007
C
WAT
1010
7
HOH
HOH
1010
C
WAT
1050
7
HOH
HOH
1050
C
WAT
2039
7
HOH
HOH
2039
C
WAT
2047
7
HOH
HOH
2047
C
WAT
2290
7
HOH
HOH
2290
C
WAT
2295
7
HOH
HOH
2295
C
WAT
2619
7
HOH
HOH
2619
C
WAT
2737
7
HOH
HOH
2737
C
WAT
2880
7
HOH
HOH
2880
C
WAT
2946
7
HOH
HOH
2946
C
WAT
2994
7
HOH
HOH
2994
C
WAT
3042
7
HOH
HOH
3042
C
WAT
3044
7
HOH
HOH
3044
C
WAT
3055
7
HOH
HOH
3055
C
WAT
1001
7
HOH
HOH
1001
A
WAT
1004
7
HOH
HOH
1004
A
WAT
1005
7
HOH
HOH
1005
A
WAT
1006
7
HOH
HOH
1006
A
WAT
1008
7
HOH
HOH
1008
A
WAT
1009
7
HOH
HOH
1009
A
WAT
1016
7
HOH
HOH
1016
A
WAT
1017
7
HOH
HOH
1017
A
WAT
1030
7
HOH
HOH
1030
A
WAT
1031
7
HOH
HOH
1031
A
WAT
1032
7
HOH
HOH
1032
A
WAT
1033
7
HOH
HOH
1033
A
WAT
1034
7
HOH
HOH
1034
A
WAT
1035
7
HOH
HOH
1035
A
WAT
1037
7
HOH
HOH
1037
A
WAT
1039
7
HOH
HOH
1039
A
WAT
1040
7
HOH
HOH
1040
A
WAT
1041
7
HOH
HOH
1041
A
WAT
1042
7
HOH
HOH
1042
A
WAT
1045
7
HOH
HOH
1045
A
WAT
2001
7
HOH
HOH
2001
A
WAT
2002
7
HOH
HOH
2002
A
WAT
2005
7
HOH
HOH
2005
A
WAT
2006
7
HOH
HOH
2006
A
WAT
2007
7
HOH
HOH
2007
A
WAT
2008
7
HOH
HOH
2008
A
WAT
2010
7
HOH
HOH
2010
A
WAT
2011
7
HOH
HOH
2011
A
WAT
2012
7
HOH
HOH
2012
A
WAT
2013
7
HOH
HOH
2013
A
WAT
2016
7
HOH
HOH
2016
A
WAT
2017
7
HOH
HOH
2017
A
WAT
2018
7
HOH
HOH
2018
A
WAT
2019
7
HOH
HOH
2019
A
WAT
2020
7
HOH
HOH
2020
A
WAT
2021
7
HOH
HOH
2021
A
WAT
2022
7
HOH
HOH
2022
A
WAT
2023
7
HOH
HOH
2023
A
WAT
2024
7
HOH
HOH
2024
A
WAT
2025
7
HOH
HOH
2025
A
WAT
2026
7
HOH
HOH
2026
A
WAT
2028
7
HOH
HOH
2028
A
WAT
2029
7
HOH
HOH
2029
A
WAT
2031
7
HOH
HOH
2031
A
WAT
2033
7
HOH
HOH
2033
A
WAT
2034
7
HOH
HOH
2034
A
WAT
2035
7
HOH
HOH
2035
A
WAT
2037
7
HOH
HOH
2037
A
WAT
2038
7
HOH
HOH
2038
A
WAT
2040
7
HOH
HOH
2040
A
WAT
2041
7
HOH
HOH
2041
A
WAT
2044
7
HOH
HOH
2044
A
WAT
2045
7
HOH
HOH
2045
A
WAT
2046
7
HOH
HOH
2046
A
WAT
2048
7
HOH
HOH
2048
A
WAT
2049
7
HOH
HOH
2049
A
WAT
2050
7
HOH
HOH
2050
A
WAT
2051
7
HOH
HOH
2051
A
WAT
2053
7
HOH
HOH
2053
A
WAT
2055
7
HOH
HOH
2055
A
WAT
2057
7
HOH
HOH
2057
A
WAT
2058
7
HOH
HOH
2058
A
WAT
2059
7
HOH
HOH
2059
A
WAT
2101
7
HOH
HOH
2101
A
WAT
2102
7
HOH
HOH
2102
A
WAT
2103
7
HOH
HOH
2103
A
WAT
2105
7
HOH
HOH
2105
A
WAT
2109
7
HOH
HOH
2109
A
WAT
2110
7
HOH
HOH
2110
A
WAT
2111
7
HOH
HOH
2111
A
WAT
2112
7
HOH
HOH
2112
A
WAT
2115
7
HOH
HOH
2115
A
WAT
2116
7
HOH
HOH
2116
A
WAT
2121
7
HOH
HOH
2121
A
WAT
2123
7
HOH
HOH
2123
A
WAT
2126
7
HOH
HOH
2126
A
WAT
2130
7
HOH
HOH
2130
A
WAT
2131
7
HOH
HOH
2131
A
WAT
2132
7
HOH
HOH
2132
A
WAT
2135
7
HOH
HOH
2135
A
WAT
2137
7
HOH
HOH
2137
A
WAT
2139
7
HOH
HOH
2139
A
WAT
2140
7
HOH
HOH
2140
A
WAT
2145
7
HOH
HOH
2145
A
WAT
2146
7
HOH
HOH
2146
A
WAT
2148
7
HOH
HOH
2148
A
WAT
2149
7
HOH
HOH
2149
A
WAT
2154
7
HOH
HOH
2154
A
WAT
2156
7
HOH
HOH
2156
A
WAT
2159
7
HOH
HOH
2159
A
WAT
2167
7
HOH
HOH
2167
A
WAT
2171
7
HOH
HOH
2171
A
WAT
2186
7
HOH
HOH
2186
A
WAT
2188
7
HOH
HOH
2188
A
WAT
2203
7
HOH
HOH
2203
A
WAT
2204
7
HOH
HOH
2204
A
WAT
2211
7
HOH
HOH
2211
A
WAT
2212
7
HOH
HOH
2212
A
WAT
2214
7
HOH
HOH
2214
A
WAT
2221
7
HOH
HOH
2221
A
WAT
2242
7
HOH
HOH
2242
A
WAT
2244
7
HOH
HOH
2244
A
WAT
2248
7
HOH
HOH
2248
A
WAT
2250
7
HOH
HOH
2250
A
WAT
2254
7
HOH
HOH
2254
A
WAT
2255
7
HOH
HOH
2255
A
WAT
2256
7
HOH
HOH
2256
A
WAT
2258
7
HOH
HOH
2258
A
WAT
2259
7
HOH
HOH
2259
A
WAT
2264
7
HOH
HOH
2264
A
WAT
2266
7
HOH
HOH
2266
A
WAT
2302
7
HOH
HOH
2302
A
WAT
2303
7
HOH
HOH
2303
A
WAT
2304
7
HOH
HOH
2304
A
WAT
2308
7
HOH
HOH
2308
A
WAT
2310
7
HOH
HOH
2310
A
WAT
2312
7
HOH
HOH
2312
A
WAT
2313
7
HOH
HOH
2313
A
WAT
2316
7
HOH
HOH
2316
A
WAT
2318
7
HOH
HOH
2318
A
WAT
2321
7
HOH
HOH
2321
A
WAT
2322
7
HOH
HOH
2322
A
WAT
2324
7
HOH
HOH
2324
A
WAT
2325
7
HOH
HOH
2325
A
WAT
2327
7
HOH
HOH
2327
A
WAT
2328
7
HOH
HOH
2328
A
WAT
2329
7
HOH
HOH
2329
A
WAT
2332
7
HOH
HOH
2332
A
WAT
2340
7
HOH
HOH
2340
A
WAT
2341
7
HOH
HOH
2341
A
WAT
2342
7
HOH
HOH
2342
A
WAT
2351
7
HOH
HOH
2351
A
WAT
2358
7
HOH
HOH
2358
A
WAT
2364
7
HOH
HOH
2364
A
WAT
2366
7
HOH
HOH
2366
A
WAT
2370
7
HOH
HOH
2370
A
WAT
2373
7
HOH
HOH
2373
A
WAT
2376
7
HOH
HOH
2376
A
WAT
2377
7
HOH
HOH
2377
A
WAT
2378
7
HOH
HOH
2378
A
WAT
2379
7
HOH
HOH
2379
A
WAT
2380
7
HOH
HOH
2380
A
WAT
2381
7
HOH
HOH
2381
A
WAT
2403
7
HOH
HOH
2403
A
WAT
2405
7
HOH
HOH
2405
A
WAT
2407
7
HOH
HOH
2407
A
WAT
2408
7
HOH
HOH
2408
A
WAT
2414
7
HOH
HOH
2414
A
WAT
2415
7
HOH
HOH
2415
A
WAT
2419
7
HOH
HOH
2419
A
WAT
2424
7
HOH
HOH
2424
A
WAT
2428
7
HOH
HOH
2428
A
WAT
2429
7
HOH
HOH
2429
A
WAT
2430
7
HOH
HOH
2430
A
WAT
2431
7
HOH
HOH
2431
A
WAT
2437
7
HOH
HOH
2437
A
WAT
2440
7
HOH
HOH
2440
A
WAT
2442
7
HOH
HOH
2442
A
WAT
2458
7
HOH
HOH
2458
A
WAT
2460
7
HOH
HOH
2460
A
WAT
2463
7
HOH
HOH
2463
A
WAT
2473
7
HOH
HOH
2473
A
WAT
2498
7
HOH
HOH
2498
A
WAT
2501
7
HOH
HOH
2501
A
WAT
2504
7
HOH
HOH
2504
A
WAT
2506
7
HOH
HOH
2506
A
WAT
2510
7
HOH
HOH
2510
A
WAT
2511
7
HOH
HOH
2511
A
WAT
2512
7
HOH
HOH
2512
A
WAT
2513
7
HOH
HOH
2513
A
WAT
2514
7
HOH
HOH
2514
A
WAT
2537
7
HOH
HOH
2537
A
WAT
2540
7
HOH
HOH
2540
A
WAT
2560
7
HOH
HOH
2560
A
WAT
2562
7
HOH
HOH
2562
A
WAT
2563
7
HOH
HOH
2563
A
WAT
2572
7
HOH
HOH
2572
A
WAT
2577
7
HOH
HOH
2577
A
WAT
2578
7
HOH
HOH
2578
A
WAT
2580
7
HOH
HOH
2580
A
WAT
2582
7
HOH
HOH
2582
A
WAT
2591
7
HOH
HOH
2591
A
WAT
2593
7
HOH
HOH
2593
A
WAT
2611
7
HOH
HOH
2611
A
WAT
2639
7
HOH
HOH
2639
A
WAT
2646
7
HOH
HOH
2646
A
WAT
2691
7
HOH
HOH
2691
A
WAT
2697
7
HOH
HOH
2697
A
WAT
2707
7
HOH
HOH
2707
A
WAT
2732
7
HOH
HOH
2732
A
WAT
2734
7
HOH
HOH
2734
A
WAT
2768
7
HOH
HOH
2768
A
WAT
2771
7
HOH
HOH
2771
A
WAT
2772
7
HOH
HOH
2772
A
WAT
2773
7
HOH
HOH
2773
A
WAT
2774
7
HOH
HOH
2774
A
WAT
2775
7
HOH
HOH
2775
A
WAT
2776
7
HOH
HOH
2776
A
WAT
2777
7
HOH
HOH
2777
A
WAT
2778
7
HOH
HOH
2778
A
WAT
2779
7
HOH
HOH
2779
A
WAT
2780
7
HOH
HOH
2780
A
WAT
2781
7
HOH
HOH
2781
A
WAT
2782
7
HOH
HOH
2782
A
WAT
2785
7
HOH
HOH
2785
A
WAT
2786
7
HOH
HOH
2786
A
WAT
2787
7
HOH
HOH
2787
A
WAT
2788
7
HOH
HOH
2788
A
WAT
2789
7
HOH
HOH
2789
A
WAT
2792
7
HOH
HOH
2792
A
WAT
2793
7
HOH
HOH
2793
A
WAT
2794
7
HOH
HOH
2794
A
WAT
2795
7
HOH
HOH
2795
A
WAT
2797
7
HOH
HOH
2797
A
WAT
2798
7
HOH
HOH
2798
A
WAT
2799
7
HOH
HOH
2799
A
WAT
2800
7
HOH
HOH
2800
A
WAT
2801
7
HOH
HOH
2801
A
WAT
2802
7
HOH
HOH
2802
A
WAT
2803
7
HOH
HOH
2803
A
WAT
2804
7
HOH
HOH
2804
A
WAT
2805
7
HOH
HOH
2805
A
WAT
2807
7
HOH
HOH
2807
A
WAT
2808
7
HOH
HOH
2808
A
WAT
2809
7
HOH
HOH
2809
A
WAT
2810
7
HOH
HOH
2810
A
WAT
2811
7
HOH
HOH
2811
A
WAT
2812
7
HOH
HOH
2812
A
WAT
2813
7
HOH
HOH
2813
A
WAT
2814
7
HOH
HOH
2814
A
WAT
2815
7
HOH
HOH
2815
A
WAT
2816
7
HOH
HOH
2816
A
WAT
2817
7
HOH
HOH
2817
A
WAT
2820
7
HOH
HOH
2820
A
WAT
2825
7
HOH
HOH
2825
A
WAT
2827
7
HOH
HOH
2827
A
WAT
2830
7
HOH
HOH
2830
A
WAT
2831
7
HOH
HOH
2831
A
WAT
2832
7
HOH
HOH
2832
A
WAT
2833
7
HOH
HOH
2833
A
WAT
2836
7
HOH
HOH
2836
A
WAT
2837
7
HOH
HOH
2837
A
WAT
2838
7
HOH
HOH
2838
A
WAT
2840
7
HOH
HOH
2840
A
WAT
2841
7
HOH
HOH
2841
A
WAT
2842
7
HOH
HOH
2842
A
WAT
2844
7
HOH
HOH
2844
A
WAT
2845
7
HOH
HOH
2845
A
WAT
2846
7
HOH
HOH
2846
A
WAT
2847
7
HOH
HOH
2847
A
WAT
2849
7
HOH
HOH
2849
A
WAT
2851
7
HOH
HOH
2851
A
WAT
2852
7
HOH
HOH
2852
A
WAT
2853
7
HOH
HOH
2853
A
WAT
2855
7
HOH
HOH
2855
A
WAT
2857
7
HOH
HOH
2857
A
WAT
2859
7
HOH
HOH
2859
A
WAT
2861
7
HOH
HOH
2861
A
WAT
2862
7
HOH
HOH
2862
A
WAT
2866
7
HOH
HOH
2866
A
WAT
2867
7
HOH
HOH
2867
A
WAT
2873
7
HOH
HOH
2873
A
WAT
2875
7
HOH
HOH
2875
A
WAT
2877
7
HOH
HOH
2877
A
WAT
2878
7
HOH
HOH
2878
A
WAT
2883
7
HOH
HOH
2883
A
WAT
2885
7
HOH
HOH
2885
A
WAT
2886
7
HOH
HOH
2886
A
WAT
2888
7
HOH
HOH
2888
A
WAT
2889
7
HOH
HOH
2889
A
WAT
2891
7
HOH
HOH
2891
A
WAT
2893
7
HOH
HOH
2893
A
WAT
2894
7
HOH
HOH
2894
A
WAT
2899
7
HOH
HOH
2899
A
WAT
2901
7
HOH
HOH
2901
A
WAT
2902
7
HOH
HOH
2902
A
WAT
2903
7
HOH
HOH
2903
A
WAT
2904
7
HOH
HOH
2904
A
WAT
2905
7
HOH
HOH
2905
A
WAT
2914
7
HOH
HOH
2914
A
WAT
2928
7
HOH
HOH
2928
A
WAT
2931
7
HOH
HOH
2931
A
WAT
2933
7
HOH
HOH
2933
A
WAT
2936
7
HOH
HOH
2936
A
WAT
2937
7
HOH
HOH
2937
A
WAT
2938
7
HOH
HOH
2938
A
WAT
2939
7
HOH
HOH
2939
A
WAT
2940
7
HOH
HOH
2940
A
WAT
2941
7
HOH
HOH
2941
A
WAT
2943
7
HOH
HOH
2943
A
WAT
2944
7
HOH
HOH
2944
A
WAT
2945
7
HOH
HOH
2945
A
WAT
2947
7
HOH
HOH
2947
A
WAT
2948
7
HOH
HOH
2948
A
WAT
2949
7
HOH
HOH
2949
A
WAT
2950
7
HOH
HOH
2950
A
WAT
2951
7
HOH
HOH
2951
A
WAT
2952
7
HOH
HOH
2952
A
WAT
2953
7
HOH
HOH
2953
A
WAT
2954
7
HOH
HOH
2954
A
WAT
2955
7
HOH
HOH
2955
A
WAT
2956
7
HOH
HOH
2956
A
WAT
2958
7
HOH
HOH
2958
A
WAT
2960
7
HOH
HOH
2960
A
WAT
2961
7
HOH
HOH
2961
A
WAT
2962
7
HOH
HOH
2962
A
WAT
2963
7
HOH
HOH
2963
A
WAT
2964
7
HOH
HOH
2964
A
WAT
2965
7
HOH
HOH
2965
A
WAT
2966
7
HOH
HOH
2966
A
WAT
2967
7
HOH
HOH
2967
A
WAT
2968
7
HOH
HOH
2968
A
WAT
2969
7
HOH
HOH
2969
A
WAT
2970
7
HOH
HOH
2970
A
WAT
2971
7
HOH
HOH
2971
A
WAT
2973
7
HOH
HOH
2973
A
WAT
2974
7
HOH
HOH
2974
A
WAT
2975
7
HOH
HOH
2975
A
WAT
2977
7
HOH
HOH
2977
A
WAT
2978
7
HOH
HOH
2978
A
WAT
2980
7
HOH
HOH
2980
A
WAT
2982
7
HOH
HOH
2982
A
WAT
2984
7
HOH
HOH
2984
A
WAT
2985
7
HOH
HOH
2985
A
WAT
2986
7
HOH
HOH
2986
A
WAT
2987
7
HOH
HOH
2987
A
WAT
2988
7
HOH
HOH
2988
A
WAT
2989
7
HOH
HOH
2989
A
WAT
2990
7
HOH
HOH
2990
A
WAT
2991
7
HOH
HOH
2991
A
WAT
2992
7
HOH
HOH
2992
A
WAT
2993
7
HOH
HOH
2993
A
WAT
2995
7
HOH
HOH
2995
A
WAT
2997
7
HOH
HOH
2997
A
WAT
2999
7
HOH
HOH
2999
A
WAT
3000
7
HOH
HOH
3000
A
WAT
3001
7
HOH
HOH
3001
A
WAT
3002
7
HOH
HOH
3002
A
WAT
3003
7
HOH
HOH
3003
A
WAT
3004
7
HOH
HOH
3004
A
WAT
3005
7
HOH
HOH
3005
A
WAT
3006
7
HOH
HOH
3006
A
WAT
3007
7
HOH
HOH
3007
A
WAT
3008
7
HOH
HOH
3008
A
WAT
3010
7
HOH
HOH
3010
A
WAT
3011
7
HOH
HOH
3011
A
WAT
3012
7
HOH
HOH
3012
A
WAT
3013
7
HOH
HOH
3013
A
WAT
3016
7
HOH
HOH
3016
A
WAT
3018
7
HOH
HOH
3018
A
WAT
3020
7
HOH
HOH
3020
A
WAT
3021
7
HOH
HOH
3021
A
WAT
3022
7
HOH
HOH
3022
A
WAT
3023
7
HOH
HOH
3023
A
WAT
3028
7
HOH
HOH
3028
A
WAT
3029
7
HOH
HOH
3029
A
WAT
3030
7
HOH
HOH
3030
A
WAT
3031
7
HOH
HOH
3031
A
WAT
3032
7
HOH
HOH
3032
A
WAT
3033
7
HOH
HOH
3033
A
WAT
3034
7
HOH
HOH
3034
A
WAT
3035
7
HOH
HOH
3035
A
WAT
3036
7
HOH
HOH
3036
A
WAT
3037
7
HOH
HOH
3037
A
WAT
3038
7
HOH
HOH
3038
A
WAT
3040
7
HOH
HOH
3040
A
WAT
3041
7
HOH
HOH
3041
A
WAT
3047
7
HOH
HOH
3047
A
WAT
3048
7
HOH
HOH
3048
A
WAT
3050
7
HOH
HOH
3050
A
WAT
3051
7
HOH
HOH
3051
A
WAT
3052
7
HOH
HOH
3052
A
WAT
3056
7
HOH
HOH
3056
A
WAT
3057
7
HOH
HOH
3057
A
WAT
3058
7
HOH
HOH
3058
A
WAT
3059
7
HOH
HOH
3059
A
WAT
3060
7
HOH
HOH
3060
A
WAT
3061
7
HOH
HOH
3061
A
WAT
3062
7
HOH
HOH
3062
A
WAT
3063
7
HOH
HOH
3063
A
WAT
3064
7
HOH
HOH
3064
A
WAT
3065
7
HOH
HOH
3065
A
WAT
3066
7
HOH
HOH
3066
A
WAT
3067
7
HOH
HOH
3067
A
WAT
3068
7
HOH
HOH
3068
A
WAT
3069
7
HOH
HOH
3069
A
WAT
3070
7
HOH
HOH
3070
A
WAT
3071
7
HOH
HOH
3071
A
WAT
3073
7
HOH
HOH
3073
A
WAT
3074
7
HOH
HOH
3074
A
WAT
3075
7
HOH
HOH
3075
A
WAT
3076
7
HOH
HOH
3076
A
WAT
3078
7
HOH
HOH
3078
A
WAT
3079
7
HOH
HOH
3079
A
WAT
3080
7
HOH
HOH
3080
A
WAT
3081
7
HOH
HOH
3081
A
WAT
3082
7
HOH
HOH
3082
A
G
18
n
1
DG
18
B
C
19
n
2
DC
19
B
G
20
n
3
DG
20
B
A
21
n
4
DA
21
B
T
22
n
5
DT
22
B
C
23
n
6
DC
23
B
A
24
n
7
DA
24
B
G
25
n
8
DG
25
B
C
26
n
9
DC
26
B
G
27
n
10
DG
27
B
C
28
n
11
DC
28
B
G
29
n
12
DG
29
B
n
1
1
C
n
2
2
C
n
3
3
C
C
4
n
4
DC
4
C
G
5
n
5
DG
5
C
T
6
n
6
DT
6
C
G
7
n
7
DG
7
C
C
8
n
8
DC
8
C
T
9
n
9
DT
9
C
G
10
n
10
DG
10
C
A
11
n
11
DA
11
C
T
12
n
12
DT
12
C
C
13
n
13
DC
13
C
G
14
n
14
DG
14
C
C
15
n
15
DC
15
C
ALA
297
n
1
ALA
297
A
ALA
298
n
2
LYS
298
A
MET
299
n
3
MET
299
A
ALA
300
n
4
ALA
300
A
PHE
301
n
5
PHE
301
A
THR
302
n
6
THR
302
A
LEU
303
n
7
LEU
303
A
ALA
304
n
8
ALA
304
A
ASP
305
n
9
ASP
305
A
ARG
306
n
10
ARG
306
A
VAL
307
n
11
VAL
307
A
THR
308
n
12
THR
308
A
GLU
309
n
13
GLU
309
A
GLU
310
n
14
GLU
310
A
MET
311
n
15
MET
311
A
LEU
312
n
16
LEU
312
A
ALA
313
n
17
ALA
313
A
ASP
314
n
18
ASP
314
A
LYS
315
n
19
LYS
315
A
ALA
316
n
20
ALA
316
A
ALA
317
n
21
ALA
317
A
LEU
318
n
22
LEU
318
A
VAL
319
n
23
VAL
319
A
VAL
320
n
24
VAL
320
A
GLU
321
n
25
GLU
321
A
VAL
322
n
26
VAL
322
A
VAL
323
n
27
VAL
323
A
GLU
324
n
28
GLU
324
A
GLU
325
n
29
GLU
325
A
ASN
326
n
30
ASN
326
A
TYR
327
n
31
TYR
327
A
HIS
328
n
32
HIS
328
A
ASP
329
n
33
ASP
329
A
ALA
330
n
34
ALA
330
A
PRO
331
n
35
PRO
331
A
ILE
332
n
36
ILE
332
A
VAL
333
n
37
VAL
333
A
GLY
334
n
38
GLY
334
A
ILE
335
n
39
ILE
335
A
ALA
336
n
40
ALA
336
A
VAL
337
n
41
VAL
337
A
VAL
338
n
42
VAL
338
A
ASN
339
n
43
ASN
339
A
GLU
340
n
44
GLU
340
A
HIS
341
n
45
HIS
341
A
GLY
342
n
46
GLY
342
A
ARG
343
n
47
ARG
343
A
PHE
344
n
48
PHE
344
A
PHE
345
n
49
PHE
345
A
LEU
346
n
50
LEU
346
A
ARG
347
n
51
ARG
347
A
PRO
348
n
52
PRO
348
A
GLU
349
n
53
GLU
349
A
THR
350
n
54
THR
350
A
ALA
351
n
55
ALA
351
A
LEU
352
n
56
LEU
352
A
ALA
353
n
57
ALA
353
A
ASP
354
n
58
ASP
354
A
PRO
355
n
59
PRO
355
A
GLN
356
n
60
GLN
356
A
PHE
357
n
61
PHE
357
A
VAL
358
n
62
VAL
358
A
ALA
359
n
63
ALA
359
A
TRP
360
n
64
TRP
360
A
LEU
361
n
65
LEU
361
A
GLY
362
n
66
GLY
362
A
ASP
363
n
67
ASP
363
A
GLU
364
n
68
GLU
364
A
THR
365
n
69
THR
365
A
LYS
366
n
70
LYS
366
A
LYS
367
n
71
LYS
367
A
LYS
368
n
72
LYS
368
A
SER
369
n
73
SER
369
A
MET
370
n
74
MET
370
A
PHE
371
n
75
PHE
371
A
ASP
372
n
76
ASP
372
A
SER
373
n
77
SER
373
A
LYS
374
n
78
LYS
374
A
ARG
375
n
79
ARG
375
A
ALA
376
n
80
ALA
376
A
ALA
377
n
81
ALA
377
A
VAL
378
n
82
VAL
378
A
ALA
379
n
83
ALA
379
A
LEU
380
n
84
LEU
380
A
LYS
381
n
85
LYS
381
A
TRP
382
n
86
TRP
382
A
LYS
383
n
87
LYS
383
A
GLY
384
n
88
GLY
384
A
ILE
385
n
89
ILE
385
A
GLU
386
n
90
GLU
386
A
LEU
387
n
91
LEU
387
A
CYS
388
n
92
CYS
388
A
GLY
389
n
93
GLY
389
A
VAL
390
n
94
VAL
390
A
SER
391
n
95
SER
391
A
PHE
392
n
96
PHE
392
A
ASP
393
n
97
ASP
393
A
LEU
394
n
98
LEU
394
A
LEU
395
n
99
LEU
395
A
LEU
396
n
100
LEU
396
A
ALA
397
n
101
ALA
397
A
ALA
398
n
102
ALA
398
A
TYR
399
n
103
TYR
399
A
LEU
400
n
104
LEU
400
A
LEU
401
n
105
LEU
401
A
ASP
402
n
106
ASP
402
A
PRO
403
n
107
PRO
403
A
ALA
404
n
108
ALA
404
A
GLN
405
n
109
GLN
405
A
GLY
406
n
110
GLY
406
A
VAL
407
n
111
VAL
407
A
ASP
408
n
112
ASP
408
A
ASP
409
n
113
ASP
409
A
VAL
410
n
114
VAL
410
A
ALA
411
n
115
ALA
411
A
ALA
412
n
116
ALA
412
A
ALA
413
n
117
ALA
413
A
ALA
414
n
118
ALA
414
A
LYS
415
n
119
LYS
415
A
MET
416
n
120
MET
416
A
LYS
417
n
121
LYS
417
A
GLN
418
n
122
GLN
418
A
TYR
419
n
123
TYR
419
A
GLU
420
n
124
GLU
420
A
ALA
421
n
125
ALA
421
A
VAL
422
n
126
VAL
422
A
ARG
423
n
127
ARG
423
A
PRO
424
n
128
PRO
424
A
ASP
425
n
129
ASP
425
A
GLU
426
n
130
GLU
426
A
ALA
427
n
131
ALA
427
A
VAL
428
n
132
VAL
428
A
TYR
429
n
133
TYR
429
A
GLY
430
n
134
GLY
430
A
LYS
431
n
135
LYS
431
A
GLY
432
n
136
GLY
432
A
ALA
433
n
137
ALA
433
A
LYS
434
n
138
LYS
434
A
ARG
435
n
139
ARG
435
A
ALA
436
n
140
ALA
436
A
VAL
437
n
141
VAL
437
A
PRO
438
n
142
PRO
438
A
ASP
439
n
143
ASP
439
A
GLU
440
n
144
GLU
440
A
PRO
441
n
145
PRO
441
A
VAL
442
n
146
VAL
442
A
LEU
443
n
147
LEU
443
A
ALA
444
n
148
ALA
444
A
GLU
445
n
149
GLU
445
A
HIS
446
n
150
HIS
446
A
LEU
447
n
151
LEU
447
A
VAL
448
n
152
VAL
448
A
ARG
449
n
153
ARG
449
A
LYS
450
n
154
LYS
450
A
ALA
451
n
155
ALA
451
A
ALA
452
n
156
ALA
452
A
ALA
453
n
157
ALA
453
A
ILE
454
n
158
ILE
454
A
TRP
455
n
159
TRP
455
A
GLU
456
n
160
GLU
456
A
LEU
457
n
161
LEU
457
A
GLU
458
n
162
GLU
458
A
ARG
459
n
163
ARG
459
A
PRO
460
n
164
PRO
460
A
PHE
461
n
165
PHE
461
A
LEU
462
n
166
LEU
462
A
ASP
463
n
167
ASP
463
A
GLU
464
n
168
GLU
464
A
LEU
465
n
169
LEU
465
A
ARG
466
n
170
ARG
466
A
ARG
467
n
171
ARG
467
A
ASN
468
n
172
ASN
468
A
GLU
469
n
173
GLU
469
A
GLN
470
n
174
GLN
470
A
ASP
471
n
175
ASP
471
A
ARG
472
n
176
ARG
472
A
LEU
473
n
177
LEU
473
A
LEU
474
n
178
LEU
474
A
VAL
475
n
179
VAL
475
A
GLU
476
n
180
GLU
476
A
LEU
477
n
181
LEU
477
A
GLU
478
n
182
GLU
478
A
GLN
479
n
183
GLN
479
A
PRO
480
n
184
PRO
480
A
LEU
481
n
185
LEU
481
A
SER
482
n
186
SER
482
A
SER
483
n
187
SER
483
A
ILE
484
n
188
ILE
484
A
LEU
485
n
189
LEU
485
A
ALA
486
n
190
ALA
486
A
GLU
487
n
191
GLU
487
A
MET
488
n
192
MET
488
A
GLU
489
n
193
GLU
489
A
PHE
490
n
194
PHE
490
A
ALA
491
n
195
ALA
491
A
GLY
492
n
196
GLY
492
A
VAL
493
n
197
VAL
493
A
LYS
494
n
198
LYS
494
A
VAL
495
n
199
VAL
495
A
ASP
496
n
200
ASP
496
A
THR
497
n
201
THR
497
A
LYS
498
n
202
LYS
498
A
ARG
499
n
203
ARG
499
A
LEU
500
n
204
LEU
500
A
GLU
501
n
205
GLU
501
A
GLN
502
n
206
GLN
502
A
MET
503
n
207
MET
503
A
GLY
504
n
208
GLY
504
A
LYS
505
n
209
LYS
505
A
GLU
506
n
210
GLU
506
A
LEU
507
n
211
LEU
507
A
ALA
508
n
212
ALA
508
A
GLU
509
n
213
GLU
509
A
GLN
510
n
214
GLN
510
A
LEU
511
n
215
LEU
511
A
GLY
512
n
216
GLY
512
A
THR
513
n
217
THR
513
A
VAL
514
n
218
VAL
514
A
GLU
515
n
219
GLU
515
A
GLN
516
n
220
GLN
516
A
ARG
517
n
221
ARG
517
A
ILE
518
n
222
ILE
518
A
TYR
519
n
223
TYR
519
A
GLU
520
n
224
GLU
520
A
LEU
521
n
225
LEU
521
A
ALA
522
n
226
ALA
522
A
GLY
523
n
227
GLY
523
A
GLN
524
n
228
GLN
524
A
GLU
525
n
229
GLU
525
A
PHE
526
n
230
PHE
526
A
ASN
527
n
231
ASN
527
A
ILE
528
n
232
ILE
528
A
ASN
529
n
233
ASN
529
A
SER
530
n
234
SER
530
A
PRO
531
n
235
PRO
531
A
LYS
532
n
236
LYS
532
A
GLN
533
n
237
GLN
533
A
LEU
534
n
238
LEU
534
A
GLY
535
n
239
GLY
535
A
VAL
536
n
240
VAL
536
A
ILE
537
n
241
ILE
537
A
LEU
538
n
242
LEU
538
A
PHE
539
n
243
PHE
539
A
GLU
540
n
244
GLU
540
A
LYS
541
n
245
LYS
541
A
LEU
542
n
246
LEU
542
A
GLN
543
n
247
GLN
543
A
LEU
544
n
248
LEU
544
A
PRO
545
n
249
PRO
545
A
VAL
546
n
250
VAL
546
A
LEU
547
n
251
LEU
547
A
LYS
548
n
252
LYS
548
A
LYS
549
n
253
LYS
549
A
THR
550
n
254
THR
550
A
LYS
551
n
255
LYS
551
A
THR
552
n
256
THR
552
A
GLY
553
n
257
GLY
553
A
TYR
554
n
258
TYR
554
A
SER
555
n
259
SER
555
A
THR
556
n
260
THR
556
A
SER
557
n
261
SER
557
A
ALA
558
n
262
ALA
558
A
ASP
559
n
263
ASP
559
A
VAL
560
n
264
VAL
560
A
LEU
561
n
265
LEU
561
A
GLU
562
n
266
GLU
562
A
LYS
563
n
267
LYS
563
A
LEU
564
n
268
LEU
564
A
ALA
565
n
269
ALA
565
A
PRO
566
n
270
PRO
566
A
TYR
567
n
271
TYR
567
A
HIS
568
n
272
HIS
568
A
GLU
569
n
273
GLU
569
A
ILE
570
n
274
ILE
570
A
VAL
571
n
275
VAL
571
A
GLU
572
n
276
GLU
572
A
ASN
573
n
277
ASN
573
A
ILE
574
n
278
ILE
574
A
LEU
575
n
279
LEU
575
A
HIS
576
n
280
HIS
576
A
TYR
577
n
281
TYR
577
A
ARG
578
n
282
ARG
578
A
GLN
579
n
283
GLN
579
A
LEU
580
n
284
LEU
580
A
GLY
581
n
285
GLY
581
A
LYS
582
n
286
LYS
582
A
LEU
583
n
287
LEU
583
A
GLN
584
n
288
GLN
584
A
SER
585
n
289
SER
585
A
THR
586
n
290
THR
586
A
TYR
587
n
291
TYR
587
A
ILE
588
n
292
ILE
588
A
GLU
589
n
293
GLU
589
A
GLY
590
n
294
GLY
590
A
LEU
591
n
295
LEU
591
A
LEU
592
n
296
LEU
592
A
LYS
593
n
297
LYS
593
A
VAL
594
n
298
VAL
594
A
VAL
595
n
299
VAL
595
A
ARG
596
n
300
ARG
596
A
PRO
597
n
301
PRO
597
A
ASP
598
n
302
ASP
598
A
THR
599
n
303
THR
599
A
LYS
600
n
304
LYS
600
A
LYS
601
n
305
LYS
601
A
VAL
602
n
306
VAL
602
A
HIS
603
n
307
HIS
603
A
THR
604
n
308
THR
604
A
ILE
605
n
309
ILE
605
A
PHE
606
n
310
PHE
606
A
ASN
607
n
311
ASN
607
A
GLN
608
n
312
GLN
608
A
ALA
609
n
313
ALA
609
A
LEU
610
n
314
LEU
610
A
THR
611
n
315
THR
611
A
GLN
612
n
316
GLN
612
A
THR
613
n
317
THR
613
A
GLY
614
n
318
GLY
614
A
ARG
615
n
319
ARG
615
A
LEU
616
n
320
LEU
616
A
SER
617
n
321
SER
617
A
SER
618
n
322
SER
618
A
THR
619
n
323
THR
619
A
GLU
620
n
324
GLU
620
A
PRO
621
n
325
PRO
621
A
ASN
622
n
326
ASN
622
A
LEU
623
n
327
LEU
623
A
GLN
624
n
328
GLN
624
A
ASN
625
n
329
ASN
625
A
ILE
626
n
330
ILE
626
A
PRO
627
n
331
PRO
627
A
ILE
628
n
332
ILE
628
A
ARG
629
n
333
ARG
629
A
LEU
630
n
334
LEU
630
A
GLU
631
n
335
GLU
631
A
GLU
632
n
336
GLU
632
A
GLY
633
n
337
GLY
633
A
ARG
634
n
338
ARG
634
A
LYS
635
n
339
LYS
635
A
ILE
636
n
340
ILE
636
A
ARG
637
n
341
ARG
637
A
GLN
638
n
342
GLN
638
A
ALA
639
n
343
ALA
639
A
PHE
640
n
344
PHE
640
A
VAL
641
n
345
VAL
641
A
PRO
642
n
346
PRO
642
A
SER
643
n
347
SER
643
A
GLU
644
n
348
GLU
644
A
SER
645
n
349
SER
645
A
ASP
646
n
350
ASP
646
A
TRP
647
n
351
TRP
647
A
LEU
648
n
352
LEU
648
A
ILE
649
n
353
ILE
649
A
PHE
650
n
354
PHE
650
A
ALA
651
n
355
ALA
651
A
ALA
652
n
356
ALA
652
A
ASP
653
n
357
ASP
653
A
TYR
654
n
358
TYR
654
A
SER
655
n
359
SER
655
A
GLN
656
n
360
GLN
656
A
ILE
657
n
361
ILE
657
A
GLU
658
n
362
GLU
658
A
LEU
659
n
363
LEU
659
A
ARG
660
n
364
ARG
660
A
VAL
661
n
365
VAL
661
A
LEU
662
n
366
LEU
662
A
ALA
663
n
367
ALA
663
A
HIS
664
n
368
HIS
664
A
ILE
665
n
369
ILE
665
A
ALA
666
n
370
ALA
666
A
GLU
667
n
371
GLU
667
A
ASP
668
n
372
ASP
668
A
ASP
669
n
373
ASP
669
A
ASN
670
n
374
ASN
670
A
LEU
671
n
375
LEU
671
A
MET
672
n
376
MET
672
A
GLU
673
n
377
GLU
673
A
ALA
674
n
378
ALA
674
A
PHE
675
n
379
PHE
675
A
ARG
676
n
380
ARG
676
A
ARG
677
n
381
ARG
677
A
ASP
678
n
382
ASP
678
A
LEU
679
n
383
LEU
679
A
ASP
680
n
384
ASP
680
A
ILE
681
n
385
ILE
681
A
HIS
682
n
386
HIS
682
A
THR
683
n
387
THR
683
A
LYS
684
n
388
LYS
684
A
THR
685
n
389
THR
685
A
ALA
686
n
390
ALA
686
A
MET
687
n
391
MET
687
A
ASP
688
n
392
ASP
688
A
ILE
689
n
393
ILE
689
A
PHE
690
n
394
PHE
690
A
GLN
691
n
395
GLN
691
A
VAL
692
n
396
VAL
692
A
SER
693
n
397
SER
693
A
GLU
694
n
398
GLU
694
A
ASP
695
n
399
ASP
695
A
GLU
696
n
400
GLU
696
A
VAL
697
n
401
VAL
697
A
THR
698
n
402
THR
698
A
PRO
699
n
403
PRO
699
A
ASN
700
n
404
ASN
700
A
MET
701
n
405
MET
701
A
ARG
702
n
406
ARG
702
A
ARG
703
n
407
ARG
703
A
GLN
704
n
408
GLN
704
A
ALA
705
n
409
ALA
705
A
LYS
706
n
410
LYS
706
A
ALA
707
n
411
ALA
707
A
VAL
708
n
412
VAL
708
A
ASN
709
n
413
ASN
709
A
PHE
710
n
414
PHE
710
A
GLY
711
n
415
GLY
711
A
ILE
712
n
416
ILE
712
A
VAL
713
n
417
VAL
713
A
TYR
714
n
418
TYR
714
A
GLY
715
n
419
GLY
715
A
ILE
716
n
420
ILE
716
A
SER
717
n
421
SER
717
A
ASP
718
n
422
ASP
718
A
TYR
719
n
423
TYR
719
A
GLY
720
n
424
GLY
720
A
LEU
721
n
425
LEU
721
A
ALA
722
n
426
ALA
722
A
GLN
723
n
427
GLN
723
A
ASN
724
n
428
ASN
724
A
LEU
725
n
429
LEU
725
A
ASN
726
n
430
ASN
726
A
ILE
727
n
431
ILE
727
A
SER
728
n
432
SER
728
A
ARG
729
n
433
ARG
729
A
LYS
730
n
434
LYS
730
A
GLU
731
n
435
GLU
731
A
ALA
732
n
436
ALA
732
A
ALA
733
n
437
ALA
733
A
GLU
734
n
438
GLU
734
A
PHE
735
n
439
PHE
735
A
ILE
736
n
440
ILE
736
A
GLU
737
n
441
GLU
737
A
ARG
738
n
442
ARG
738
A
TYR
739
n
443
TYR
739
A
PHE
740
n
444
PHE
740
A
GLU
741
n
445
GLU
741
A
SER
742
n
446
SER
742
A
PHE
743
n
447
PHE
743
A
PRO
744
n
448
PRO
744
A
GLY
745
n
449
GLY
745
A
VAL
746
n
450
VAL
746
A
LYS
747
n
451
LYS
747
A
ARG
748
n
452
ARG
748
A
TYR
749
n
453
TYR
749
A
MET
750
n
454
MET
750
A
GLU
751
n
455
GLU
751
A
ASN
752
n
456
ASN
752
A
ILE
753
n
457
ILE
753
A
VAL
754
n
458
VAL
754
A
GLN
755
n
459
GLN
755
A
GLU
756
n
460
GLU
756
A
ALA
757
n
461
ALA
757
A
LYS
758
n
462
LYS
758
A
GLN
759
n
463
GLN
759
A
LYS
760
n
464
LYS
760
A
GLY
761
n
465
GLY
761
A
TYR
762
n
466
TYR
762
A
VAL
763
n
467
VAL
763
A
THR
764
n
468
THR
764
A
THR
765
n
469
THR
765
A
LEU
766
n
470
LEU
766
A
LEU
767
n
471
LEU
767
A
HIS
768
n
472
HIS
768
A
ARG
769
n
473
ARG
769
A
ARG
770
n
474
ARG
770
A
ARG
771
n
475
ARG
771
A
TYR
772
n
476
TYR
772
A
LEU
773
n
477
LEU
773
A
PRO
774
n
478
PRO
774
A
ASP
775
n
479
ASP
775
A
ILE
776
n
480
ILE
776
A
THR
777
n
481
THR
777
A
SER
778
n
482
SER
778
A
ARG
779
n
483
ARG
779
A
ASN
780
n
484
ASN
780
A
PHE
781
n
485
PHE
781
A
ASN
782
n
486
ASN
782
A
VAL
783
n
487
VAL
783
A
ARG
784
n
488
ARG
784
A
SER
785
n
489
SER
785
A
PHE
786
n
490
PHE
786
A
ALA
787
n
491
ALA
787
A
GLU
788
n
492
GLU
788
A
ARG
789
n
493
ARG
789
A
MET
790
n
494
MET
790
A
ALA
791
n
495
ALA
791
A
MET
792
n
496
MET
792
A
ASN
793
n
497
ASN
793
A
THR
794
n
498
THR
794
A
PRO
795
n
499
PRO
795
A
ILE
796
n
500
ILE
796
A
GLN
797
n
501
GLN
797
A
GLY
798
n
502
GLY
798
A
SER
799
n
503
SER
799
A
ALA
800
n
504
ALA
800
A
ALA
801
n
505
ALA
801
A
ASP
802
n
506
ASP
802
A
ILE
803
n
507
ILE
803
A
ILE
804
n
508
ILE
804
A
LYS
805
n
509
LYS
805
A
LYS
806
n
510
LYS
806
A
ALA
807
n
511
ALA
807
A
MET
808
n
512
MET
808
A
ILE
809
n
513
ILE
809
A
ASP
810
n
514
ASP
810
A
LEU
811
n
515
LEU
811
A
ASN
812
n
516
ASN
812
A
ALA
813
n
517
ALA
813
A
ARG
814
n
518
ARG
814
A
LEU
815
n
519
LEU
815
A
LYS
816
n
520
LYS
816
A
GLU
817
n
521
GLU
817
A
GLU
818
n
522
GLU
818
A
ARG
819
n
523
ARG
819
A
LEU
820
n
524
LEU
820
A
GLN
821
n
525
GLN
821
A
ALA
822
n
526
ALA
822
A
HIS
823
n
527
HIS
823
A
LEU
824
n
528
LEU
824
A
LEU
825
n
529
LEU
825
A
LEU
826
n
530
LEU
826
A
GLN
827
n
531
GLN
827
A
VAL
828
n
532
VAL
828
A
HIS
829
n
533
HIS
829
A
ASP
830
n
534
ASP
830
A
GLU
831
n
535
GLU
831
A
LEU
832
n
536
LEU
832
A
ILE
833
n
537
ILE
833
A
LEU
834
n
538
LEU
834
A
GLU
835
n
539
GLU
835
A
ALA
836
n
540
ALA
836
A
PRO
837
n
541
PRO
837
A
LYS
838
n
542
LYS
838
A
GLU
839
n
543
GLU
839
A
GLU
840
n
544
GLU
840
A
MET
841
n
545
MET
841
A
GLU
842
n
546
GLU
842
A
ARG
843
n
547
ARG
843
A
LEU
844
n
548
LEU
844
A
CYS
845
n
549
CYS
845
A
ARG
846
n
550
ARG
846
A
LEU
847
n
551
LEU
847
A
VAL
848
n
552
VAL
848
A
PRO
849
n
553
PRO
849
A
GLU
850
n
554
GLU
850
A
VAL
851
n
555
VAL
851
A
MET
852
n
556
MET
852
A
GLU
853
n
557
GLU
853
A
GLN
854
n
558
GLN
854
A
ALA
855
n
559
ALA
855
A
VAL
856
n
560
VAL
856
A
THR
857
n
561
THR
857
A
LEU
858
n
562
LEU
858
A
ARG
859
n
563
ARG
859
A
VAL
860
n
564
VAL
860
A
PRO
861
n
565
PRO
861
A
LEU
862
n
566
LEU
862
A
LYS
863
n
567
LYS
863
A
VAL
864
n
568
VAL
864
A
ASP
865
n
569
ASP
865
A
TYR
866
n
570
TYR
866
A
HIS
867
n
571
HIS
867
A
TYR
868
n
572
TYR
868
A
GLY
869
n
573
GLY
869
A
SER
870
n
574
SER
870
A
THR
871
n
575
THR
871
A
TRP
872
n
576
TRP
872
A
TYR
873
n
577
TYR
873
A
ASP
874
n
578
ASP
874
A
ALA
875
n
579
ALA
875
A
LYS
876
n
580
LYS
876
A
author_defined_assembly
3
trimeric
A
ASP
653
C
OD2
ASP
357
1_555
A
MG
950
I
MG
MG
1_555
A
TYR
654
C
O
TYR
358
1_555
80.1
A
ASP
653
C
OD2
ASP
357
1_555
A
MG
950
I
MG
MG
1_555
A
ASP
830
C
OD2
ASP
534
1_555
129.8
A
TYR
654
C
O
TYR
358
1_555
A
MG
950
I
MG
MG
1_555
A
ASP
830
C
OD2
ASP
534
1_555
74.0
A
ASP
653
C
OD2
ASP
357
1_555
A
MG
950
I
MG
MG
1_555
A
HOH
2511
L
O
HOH
1_555
117.2
A
TYR
654
C
O
TYR
358
1_555
A
MG
950
I
MG
MG
1_555
A
HOH
2511
L
O
HOH
1_555
75.0
A
ASP
830
C
OD2
ASP
534
1_555
A
MG
950
I
MG
MG
1_555
A
HOH
2511
L
O
HOH
1_555
96.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
302
C
N
THR
6
A
O
ARG
343
C
O
ARG
47
A
O
PHE
344
C
O
PHE
48
A
N
VAL
337
C
N
VAL
41
A
O
VAL
338
C
O
VAL
42
A
N
ALA
317
C
N
ALA
21
A
N
ALA
316
C
N
ALA
20
A
O
SER
369
C
O
SER
73
A
N
MET
370
C
N
MET
74
A
O
PHE
392
C
O
PHE
96
A
O
VAL
602
C
O
VAL
306
A
N
VAL
493
C
N
VAL
197
A
N
LYS
494
C
N
LYS
198
A
O
VAL
641
C
O
VAL
345
A
N
ILE
605
C
N
ILE
309
A
O
THR
619
C
O
THR
323
A
N
LEU
826
C
N
LEU
530
A
O
ILE
833
C
O
ILE
537
A
O
LEU
834
C
O
LEU
538
A
N
PHE
650
C
N
PHE
354
A
N
ALA
651
C
N
ALA
355
A
O
HIS
867
C
O
HIS
571
A
N
VAL
763
C
N
VAL
467
A
O
ARG
771
C
O
ARG
475
1
C
P
DC
4
B
P
DC
4
1
Y
1
C
OP1
DC
4
B
OP1
DC
4
1
Y
1
C
OP2
DC
4
B
OP2
DC
4
1
Y
1
A
CG
LYS
298
C
CG
LYS
2
1
Y
1
A
CD
LYS
298
C
CD
LYS
2
1
Y
1
A
CE
LYS
298
C
CE
LYS
2
1
Y
1
A
NZ
LYS
298
C
NZ
LYS
2
1
Y
1
C
DG
1
B
DG
1
1
Y
1
C
DT
2
B
DT
2
1
Y
1
C
DA
3
B
DA
3
1
Y
1
A
ASP
372
63.62
62.38
1
A
ASP
402
-164.56
95.03
1
A
ALA
421
-86.93
41.47
1
A
LEU
477
-117.10
-72.67
1
A
ILE
588
-121.68
-70.19
1
A
LEU
610
-123.25
-58.16
1
A
ILE
628
-156.40
-34.37
1
A
HIS
829
68.91
-55.42
PROTEIN_REP.PARAM
PROTEIN.TOP
DNA-RNA-MULTI-ENDO.PARAM
DNA-RNA-MULTI-ENDO.TOP
WATER_REP.PARAM
WATER.TOP
ION.PARAM
ION.TOP
SUCROSE.PAR
SUCROSE.TOP
30.3
6.63
0.00
0.00
-4.67
0.00
-1.96
THE BACILLUS POLYMERASE WAS CO- CRYSTALLIZED WITH A DNA CONTAINING A 10 BASE PAIR DUPLEX AND A 5 BASE 5' TEMPLATE OVERHANG. THE CRYSTAL WAS SUBSEQUENTLY PLACED INTO A STABILIZING SOLUTION CONTAINING DCTP AND DGTP. THE RESULTING PRODUCT COMPLEX CONTAINED 12 BASE PAIRS OF DUPLEX DNA AND A 3 BASE 5' TEMPLATE OVERHANG. THE THREE BASES IN THE OVERHANG ARE DISORDERED AND ARE NOT INCLUDED IN THE MODEL. A 3' PHOSPHATE WAS LOCATED ON THE TEMPLATE STRAND (CHAIN C) TO ENSURE THAT THE DNA DUPLEX WAS NOT BOUND BACKWARDS BY THE POLYMERASE DURING CRYSTALLIZATION. ELECTRON DENSITY WAS OBSERVED FOR ALL PROTEIN SIDE CHAINS EXCEPT LYSINE 298, WHICH WAS MODELLED TO THE BETA CARBON. THE MAGNESIUM AT POSITION 950 WAS ASSIGNED DUE TO THE LOW REFINED B-FACTOR AND COMPARISON WITH A RELATED KLENTAQ POLYMERASE STRUCTURE (3KTQ). HOWEVER, THE RESOLUTION OF THE STRUCTURE PREVENTS A DEFINITIVE ASSIGNMENT BETWEEN WATER AND MAGNESIUM.
0.237
0.004
0.204
0.224
0.222
1.90
43.70
2928
59353
57823
5.1
84.0
RANDOM
2156818.82
2156818.82
0.0
1
RESTRAINED
THROUGHOUT
2.0
MOLECULAR REPLACEMENT
PDB ENTRY 2BDP
Engh & Huber
FLAT MODEL
44.7868
0.384177
0.26
0.21
5.00
0.13
0.09
1.90
43.70
423
5622
62
487
4650
0.005
1.2
22.4
0.87
0.92
1.50
1.48
2.00
1.46
2.00
2.26
2.50
0.277
0.023
0.246
1.97
148
2352
10
5.9
36.9
19.1
1.9
43.69
1NK9
60333
60333
-3
-3
0.047
1
28.7
4.7
87.1
1.90
1.97
3.5
3036
0.217
2.3
44.4
data reduction
DENZO
data scaling
SCALEPACK
refinement
CNS
phasing
CNS
A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER TWO ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP AND DGTP.
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
5
N
N
5
N
N
6
N
N
7
N
N
7
N
N
7
N
N
Exists as a monomer. One molecule per asymmetric unit.
A
THR
308
C
THR
12
HELX_P
A
ALA
313
C
ALA
17
5
1
6
A
ARG
347
C
ARG
51
HELX_P
A
LEU
352
C
LEU
56
1
2
6
A
ASP
354
C
ASP
58
HELX_P
A
ASP
363
C
ASP
67
1
3
10
A
ASP
372
C
ASP
76
HELX_P
A
TRP
382
C
TRP
86
1
4
11
A
LEU
394
C
LEU
98
HELX_P
A
ASP
402
C
ASP
106
1
5
9
A
PRO
403
C
PRO
107
HELX_P
A
GLY
406
C
GLY
110
5
6
4
A
ASP
409
C
ASP
113
HELX_P
A
MET
416
C
MET
120
1
7
8
A
PRO
424
C
PRO
128
HELX_P
A
GLY
430
C
GLY
134
1
8
7
A
LYS
431
C
LYS
135
HELX_P
A
ARG
435
C
ARG
139
5
9
5
A
ASP
439
C
ASP
143
HELX_P
A
ASN
468
C
ASN
172
1
10
30
A
GLN
470
C
GLN
174
HELX_P
A
LEU
477
C
LEU
181
1
11
8
A
LEU
477
C
LEU
181
HELX_P
A
GLY
492
C
GLY
196
1
12
16
A
ASP
496
C
ASP
200
HELX_P
A
GLY
523
C
GLY
227
1
13
28
A
SER
530
C
SER
234
HELX_P
A
GLU
540
C
GLU
244
1
14
11
A
SER
557
C
SER
261
HELX_P
A
ALA
565
C
ALA
269
1
15
9
A
PRO
566
C
PRO
270
HELX_P
A
HIS
568
C
HIS
272
5
16
3
A
GLU
569
C
GLU
273
HELX_P
A
ILE
588
C
ILE
292
1
17
20
A
ILE
588
C
ILE
292
HELX_P
A
VAL
595
C
VAL
299
1
18
8
A
LEU
630
C
LEU
334
HELX_P
A
LYS
635
C
LYS
339
1
19
6
A
ILE
636
C
ILE
340
HELX_P
A
GLN
638
C
GLN
342
5
20
3
A
GLN
656
C
GLN
360
HELX_P
A
GLU
667
C
GLU
371
1
21
12
A
ASP
668
C
ASP
372
HELX_P
A
ARG
677
C
ARG
381
1
22
10
A
ASP
680
C
ASP
384
HELX_P
A
PHE
690
C
PHE
394
1
23
11
A
SER
693
C
SER
397
HELX_P
A
VAL
697
C
VAL
401
5
24
5
A
THR
698
C
THR
402
HELX_P
A
TYR
714
C
TYR
418
1
25
17
A
SER
717
C
SER
421
HELX_P
A
LEU
725
C
LEU
429
1
26
9
A
SER
728
C
SER
432
HELX_P
A
PHE
743
C
PHE
447
1
27
16
A
PHE
743
C
PHE
447
HELX_P
A
GLY
761
C
GLY
465
1
28
19
A
PRO
774
C
PRO
478
HELX_P
A
SER
778
C
SER
482
5
29
5
A
ASN
780
C
ASN
484
HELX_P
A
GLU
818
C
GLU
522
1
30
39
A
GLU
840
C
GLU
544
HELX_P
A
GLN
854
C
GLN
558
1
31
15
covale
1.470
both
sing
D
GLC
1
D
C1
GLC
1_555
D
FRU
2
D
O2
FRU
1_555
covale
1.476
both
sing
E
GLC
1
E
C1
GLC
1_555
E
FRU
2
E
O2
FRU
1_555
metalc
2.739
A
ASP
653
C
OD2
ASP
357
1_555
A
MG
950
I
MG
MG
1_555
metalc
2.890
A
TYR
654
C
O
TYR
358
1_555
A
MG
950
I
MG
MG
1_555
metalc
3.033
A
ASP
830
C
OD2
ASP
534
1_555
A
MG
950
I
MG
MG
1_555
metalc
2.954
A
MG
950
I
MG
MG
1_555
A
HOH
2511
L
O
HOH
1_555
hydrog
WATSON-CRICK
B
DG
18
A
N1
DG
1
1_555
C
DC
15
B
N3
DC
15
1_555
hydrog
WATSON-CRICK
B
DG
18
A
N2
DG
1
1_555
C
DC
15
B
O2
DC
15
1_555
hydrog
WATSON-CRICK
B
DG
18
A
O6
DG
1
1_555
C
DC
15
B
N4
DC
15
1_555
hydrog
DC-DG PAIR
B
DC
19
A
O2
DC
2
1_555
C
DG
14
B
N2
DG
14
1_555
hydrog
WATSON-CRICK
B
DG
20
A
N1
DG
3
1_555
C
DC
13
B
N3
DC
13
1_555
hydrog
WATSON-CRICK
B
DG
20
A
N2
DG
3
1_555
C
DC
13
B
O2
DC
13
1_555
hydrog
WATSON-CRICK
B
DG
20
A
O6
DG
3
1_555
C
DC
13
B
N4
DC
13
1_555
hydrog
DA-DT PAIR
B
DA
21
A
N1
DA
4
1_555
C
DT
12
B
N3
DT
12
1_555
hydrog
WATSON-CRICK
B
DT
22
A
N3
DT
5
1_555
C
DA
11
B
N1
DA
11
1_555
hydrog
WATSON-CRICK
B
DT
22
A
O4
DT
5
1_555
C
DA
11
B
N6
DA
11
1_555
hydrog
WATSON-CRICK
B
DC
23
A
N3
DC
6
1_555
C
DG
10
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
B
DC
23
A
N4
DC
6
1_555
C
DG
10
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
B
DC
23
A
O2
DC
6
1_555
C
DG
10
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
B
DA
24
A
N1
DA
7
1_555
C
DT
9
B
N3
DT
9
1_555
hydrog
WATSON-CRICK
B
DA
24
A
N6
DA
7
1_555
C
DT
9
B
O4
DT
9
1_555
hydrog
WATSON-CRICK
B
DG
25
A
N1
DG
8
1_555
C
DC
8
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
B
DG
25
A
N2
DG
8
1_555
C
DC
8
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
B
DG
25
A
O6
DG
8
1_555
C
DC
8
B
N4
DC
8
1_555
hydrog
WATSON-CRICK
B
DC
26
A
N3
DC
9
1_555
C
DG
7
B
N1
DG
7
1_555
hydrog
WATSON-CRICK
B
DC
26
A
N4
DC
9
1_555
C
DG
7
B
O6
DG
7
1_555
hydrog
WATSON-CRICK
B
DC
26
A
O2
DC
9
1_555
C
DG
7
B
N2
DG
7
1_555
hydrog
DG-DT MISPAIR
B
DG
27
A
N1
DG
10
1_555
C
DT
6
B
O4
DT
6
1_555
hydrog
WATSON-CRICK
B
DC
28
A
N3
DC
11
1_555
C
DG
5
B
N1
DG
5
1_555
hydrog
WATSON-CRICK
B
DC
28
A
N4
DC
11
1_555
C
DG
5
B
O6
DG
5
1_555
hydrog
WATSON-CRICK
B
DC
28
A
O2
DC
11
1_555
C
DG
5
B
N2
DG
5
1_555
hydrog
WATSON-CRICK
B
DG
29
A
N1
DG
12
1_555
C
DC
4
B
N3
DC
4
1_555
hydrog
WATSON-CRICK
B
DG
29
A
N2
DG
12
1_555
C
DC
4
B
O2
DC
4
1_555
hydrog
WATSON-CRICK
B
DG
29
A
O6
DG
12
1_555
C
DC
4
B
N4
DC
4
1_555
TRANSFERASE/DNA
DNA POLYMERASE I, DNA REPLICATION, KLENOW FRAGMENT, PROTEIN-DNA COMPLEX, DNA MISMATCH, TRANSFERASE-DNA COMPLEX
A
GLU
620
C
GLU
324
1
A
PRO
621
C
PRO
325
0.12
1NK9
PDB
1
1NK9
1NK9
PDB
2
1NK9
DPO1_BACST
UNP
3
P52026
18
29
1NK9
18
29
1NK9
B
1
1
12
1
15
1NK9
1
15
1NK9
C
2
1
15
304
876
1NK9
304
876
P52026
A
3
8
580
6
3
2
4
2
parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
THR
302
C
THR
6
A
ALA
304
C
ALA
8
A
GLY
342
C
GLY
46
A
LEU
346
C
LEU
50
A
GLY
334
C
GLY
38
A
ASN
339
C
ASN
43
A
LYS
315
C
LYS
19
A
GLU
321
C
GLU
25
A
LYS
367
C
LYS
71
A
MET
370
C
MET
74
A
VAL
390
C
VAL
94
A
ASP
393
C
ASP
97
A
LYS
601
C
LYS
305
A
VAL
602
C
VAL
306
A
VAL
493
C
VAL
197
A
VAL
495
C
VAL
199
A
PHE
640
C
PHE
344
A
VAL
641
C
VAL
345
A
ILE
605
C
ILE
309
A
ASN
607
C
ASN
311
A
SER
617
C
SER
321
A
THR
619
C
THR
323
A
HIS
823
C
HIS
527
A
GLN
827
C
GLN
531
A
GLU
831
C
GLU
535
A
PRO
837
C
PRO
541
A
TRP
647
C
TRP
351
A
TYR
654
C
TYR
358
A
VAL
864
C
VAL
568
A
GLY
869
C
GLY
573
A
TYR
762
C
TYR
466
A
THR
764
C
THR
468
A
ARG
770
C
ARG
474
A
TYR
772
C
TYR
476
19
P 21 21 21