1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Otting, G.
Liepinsh, E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
4
793
795
10.1038/nsb1097-793
9334742
Saposin fold revealed by the NMR structure of NK-lysin.
1997
10.2210/pdb1nkl/pdb
pdb_00001nkl
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
ACTIVE BY MEMBRANE-BINDING
8945.699
NK-LYSIN
1
nat
polymer
no
no
GYFCESCRKIIQKLEDMVGPQPNEDTVTQAASQVCDKLKILRGLCKKIMRSFLRRISWDILTGKKPQAICVDIKICKE
GYFCESCRKIIQKLEDMVGPQPNEDTVTQAASQVCDKLKILRGLCKKIMRSFLRRISWDILTGKKPQAICVDIKICKE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
pig
Sus
sample
9823
INTESTINE
Sus scrofa
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1997-06-16
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_ref_seq_dif.details
Y
BNL
1997-04-17
REL
REL
LEAST RESTRAINT VIOLATION
50
20
NOESY
COSY
TOCSY
5.5
309
K
USING DEFAULT PARAMETERS PROVIDED BY THE PROGRAM WITH RESTRAINTS FOR PEPTIDE BOND PLANARITY. PROGRAM DIANA BY GUNTERT, BRAUN, WUTHRICH ALSO WAS USED.
VARIABLE TARGET FUNCTION
LUGINBUHL,GUNTERT,BILLETER,WUTHRICH
refinement
OPAL
structure solution
DIANA
structure solution
OPAL
600
Bruker
DMX600
750
Varian
UNITY750
GLY
1
n
1
GLY
1
A
TYR
2
n
2
TYR
2
A
PHE
3
n
3
PHE
3
A
CYS
4
n
4
CYS
4
A
GLU
5
n
5
GLU
5
A
SER
6
n
6
SER
6
A
CYS
7
n
7
CYS
7
A
ARG
8
n
8
ARG
8
A
LYS
9
n
9
LYS
9
A
ILE
10
n
10
ILE
10
A
ILE
11
n
11
ILE
11
A
GLN
12
n
12
GLN
12
A
LYS
13
n
13
LYS
13
A
LEU
14
n
14
LEU
14
A
GLU
15
n
15
GLU
15
A
ASP
16
n
16
ASP
16
A
MET
17
n
17
MET
17
A
VAL
18
n
18
VAL
18
A
GLY
19
n
19
GLY
19
A
PRO
20
n
20
PRO
20
A
GLN
21
n
21
GLN
21
A
PRO
22
n
22
PRO
22
A
ASN
23
n
23
ASN
23
A
GLU
24
n
24
GLU
24
A
ASP
25
n
25
ASP
25
A
THR
26
n
26
THR
26
A
VAL
27
n
27
VAL
27
A
THR
28
n
28
THR
28
A
GLN
29
n
29
GLN
29
A
ALA
30
n
30
ALA
30
A
ALA
31
n
31
ALA
31
A
SER
32
n
32
SER
32
A
GLN
33
n
33
GLN
33
A
VAL
34
n
34
VAL
34
A
CYS
35
n
35
CYS
35
A
ASP
36
n
36
ASP
36
A
LYS
37
n
37
LYS
37
A
LEU
38
n
38
LEU
38
A
LYS
39
n
39
LYS
39
A
ILE
40
n
40
ILE
40
A
LEU
41
n
41
LEU
41
A
ARG
42
n
42
ARG
42
A
GLY
43
n
43
GLY
43
A
LEU
44
n
44
LEU
44
A
CYS
45
n
45
CYS
45
A
LYS
46
n
46
LYS
46
A
LYS
47
n
47
LYS
47
A
ILE
48
n
48
ILE
48
A
MET
49
n
49
MET
49
A
ARG
50
n
50
ARG
50
A
SER
51
n
51
SER
51
A
PHE
52
n
52
PHE
52
A
LEU
53
n
53
LEU
53
A
ARG
54
n
54
ARG
54
A
ARG
55
n
55
ARG
55
A
ILE
56
n
56
ILE
56
A
SER
57
n
57
SER
57
A
TRP
58
n
58
TRP
58
A
ASP
59
n
59
ASP
59
A
ILE
60
n
60
ILE
60
A
LEU
61
n
61
LEU
61
A
THR
62
n
62
THR
62
A
GLY
63
n
63
GLY
63
A
LYS
64
n
64
LYS
64
A
LYS
65
n
65
LYS
65
A
PRO
66
n
66
PRO
66
A
GLN
67
n
67
GLN
67
A
ALA
68
n
68
ALA
68
A
ILE
69
n
69
ILE
69
A
CYS
70
n
70
CYS
70
A
VAL
71
n
71
VAL
71
A
ASP
72
n
72
ASP
72
A
ILE
73
n
73
ILE
73
A
LYS
74
n
74
LYS
74
A
ILE
75
n
75
ILE
75
A
CYS
76
n
76
CYS
76
A
LYS
77
n
77
LYS
77
A
GLU
78
n
78
GLU
78
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
OE1
HG
GLU
SER
24
57
1.54
2
A
A
OE1
HG
GLU
SER
24
57
1.54
2
A
A
HD2
OD2
ASP
ASP
59
72
1.59
5
A
A
OE2
HG
GLU
SER
24
57
1.58
6
A
A
OE2
HG
GLU
SER
24
57
1.58
8
A
A
OE2
HG
GLU
SER
24
57
1.59
9
A
A
OE1
HG
GLU
SER
24
57
1.55
10
A
A
OE1
HG
GLU
SER
24
57
1.56
11
A
A
OE1
HG
GLU
SER
24
57
1.54
12
A
A
OE1
HG
GLU
SER
24
57
1.59
13
A
A
OE1
HG
GLU
SER
24
57
1.55
15
A
A
OE2
HG
GLU
SER
24
57
1.58
16
A
A
OE2
HG
GLU
SER
24
57
1.58
17
A
A
OE1
HG
GLU
SER
24
57
1.55
19
A
A
OE2
HG
GLU
SER
24
57
1.59
20
A
A
OE1
HG
GLU
SER
24
57
1.56
3
A
LYS
77
10.96
1
A
TYR
2
0.122
SIDE CHAIN
1
A
ASP
16
0.088
SIDE CHAIN
2
A
TYR
2
0.076
SIDE CHAIN
2
A
ARG
42
0.092
SIDE CHAIN
3
A
TYR
2
0.117
SIDE CHAIN
3
A
ARG
54
0.102
SIDE CHAIN
5
A
TYR
2
0.110
SIDE CHAIN
8
A
ASP
16
0.080
SIDE CHAIN
9
A
ASP
16
0.078
SIDE CHAIN
10
A
TYR
2
0.113
SIDE CHAIN
11
A
TYR
2
0.130
SIDE CHAIN
11
A
ARG
54
0.084
SIDE CHAIN
12
A
ASP
16
0.104
SIDE CHAIN
12
A
ARG
42
0.078
SIDE CHAIN
13
A
ASP
16
0.097
SIDE CHAIN
14
A
ASP
16
0.083
SIDE CHAIN
15
A
ASP
16
0.077
SIDE CHAIN
15
A
ARG
42
0.079
SIDE CHAIN
16
A
ASP
16
0.074
SIDE CHAIN
17
A
TYR
2
0.100
SIDE CHAIN
18
A
ASP
16
0.087
SIDE CHAIN
1
10.71
1.50
110.90
121.61
A
A
A
CA
CB
CG1
VAL
VAL
VAL
34
34
34
N
2
10.03
1.50
110.90
120.93
A
A
A
CA
CB
CG1
VAL
VAL
VAL
34
34
34
N
3
9.67
1.50
110.90
120.57
A
A
A
CA
CB
CG1
VAL
VAL
VAL
34
34
34
N
4
9.16
1.50
110.90
120.06
A
A
A
CA
CB
CG1
VAL
VAL
VAL
34
34
34
N
5
9.22
1.50
110.90
120.12
A
A
A
CA
CB
CG1
VAL
VAL
VAL
34
34
34
N
5
-5.98
0.90
118.30
112.32
A
A
A
CB
CG
OD2
ASP
ASP
ASP
36
36
36
N
6
11.07
1.50
110.90
121.97
A
A
A
CA
CB
CG1
VAL
VAL
VAL
34
34
34
N
7
9.18
1.50
110.90
120.08
A
A
A
CA
CB
CG1
VAL
VAL
VAL
34
34
34
N
8
9.01
1.50
110.90
119.91
A
A
A
CA
CB
CG1
VAL
VAL
VAL
34
34
34
N
9
9.90
1.50
110.90
120.80
A
A
A
CA
CB
CG1
VAL
VAL
VAL
34
34
34
N
9
6.43
0.90
118.30
124.73
A
A
A
CB
CG
OD2
ASP
ASP
ASP
59
59
59
N
10
11.14
1.50
110.90
122.04
A
A
A
CA
CB
CG1
VAL
VAL
VAL
34
34
34
N
10
5.41
0.90
118.30
123.71
A
A
A
CB
CG
OD2
ASP
ASP
ASP
59
59
59
N
11
11.05
1.50
110.90
121.95
A
A
A
CA
CB
CG1
VAL
VAL
VAL
34
34
34
N
11
5.41
0.90
118.30
123.71
A
A
A
CB
CG
OD2
ASP
ASP
ASP
59
59
59
N
12
10.69
1.50
110.90
121.59
A
A
A
CA
CB
CG1
VAL
VAL
VAL
34
34
34
N
13
10.73
1.50
110.90
121.63
A
A
A
CA
CB
CG1
VAL
VAL
VAL
34
34
34
N
14
10.45
1.50
110.90
121.35
A
A
A
CA
CB
CG1
VAL
VAL
VAL
34
34
34
N
15
10.03
1.50
110.90
120.93
A
A
A
CA
CB
CG1
VAL
VAL
VAL
34
34
34
N
16
10.47
1.50
110.90
121.37
A
A
A
CA
CB
CG1
VAL
VAL
VAL
34
34
34
N
16
-5.86
0.90
118.30
112.44
A
A
A
CB
CG
OD1
ASP
ASP
ASP
36
36
36
N
17
9.97
1.50
110.90
120.87
A
A
A
CA
CB
CG1
VAL
VAL
VAL
34
34
34
N
18
10.07
1.50
110.90
120.97
A
A
A
CA
CB
CG1
VAL
VAL
VAL
34
34
34
N
18
13.39
2.00
110.40
123.79
A
A
A
CB
CA
C
LYS
LYS
LYS
39
39
39
N
19
10.60
1.50
110.90
121.50
A
A
A
CA
CB
CG1
VAL
VAL
VAL
34
34
34
N
20
10.89
1.50
110.90
121.79
A
A
A
CA
CB
CG1
VAL
VAL
VAL
34
34
34
N
1
A
TYR
2
57.91
-60.36
1
A
PHE
3
-29.41
-38.56
1
A
GLN
21
20.15
66.34
1
A
ILE
40
75.17
-64.92
1
A
PHE
52
-144.06
39.77
1
A
LYS
74
65.91
73.40
1
A
CYS
76
-83.24
-94.09
1
A
LYS
77
172.67
80.65
2
A
GLN
21
-0.45
79.21
2
A
ILE
40
74.44
-61.75
2
A
LEU
53
-61.04
-70.53
2
A
LYS
74
68.22
77.49
2
A
CYS
76
-83.60
-83.89
2
A
LYS
77
-149.61
54.80
3
A
PHE
3
-38.46
-38.63
3
A
GLN
21
33.49
60.18
3
A
PRO
22
-78.90
-162.66
3
A
ILE
40
68.89
-69.18
3
A
PHE
52
-144.16
38.52
3
A
LYS
74
61.52
81.47
3
A
CYS
76
-83.78
-103.53
3
A
LYS
77
-173.76
82.19
4
A
TYR
2
61.38
-47.58
4
A
GLN
21
22.31
65.88
4
A
PRO
22
-78.20
-167.75
4
A
ILE
40
69.71
-61.63
4
A
PHE
52
-148.79
38.40
4
A
THR
62
-89.07
30.15
4
A
LYS
74
69.62
76.78
4
A
ILE
75
-141.52
-27.00
5
A
GLN
21
-28.00
93.06
5
A
ILE
40
75.82
-60.85
5
A
PHE
52
-143.86
39.23
5
A
LYS
74
72.86
87.03
5
A
CYS
76
-88.67
-87.69
5
A
LYS
77
-156.99
71.20
6
A
GLN
21
29.22
59.53
6
A
ILE
40
79.10
-49.90
6
A
LYS
74
69.08
80.45
6
A
ILE
75
-140.91
-24.07
6
A
CYS
76
-84.17
-84.58
6
A
LYS
77
-163.11
69.01
7
A
TYR
2
61.50
-60.20
7
A
PHE
3
-29.34
-38.92
7
A
GLN
21
34.85
58.99
7
A
ILE
40
81.07
-52.61
7
A
LYS
74
61.81
75.98
7
A
CYS
76
-82.90
-100.86
7
A
LYS
77
-171.01
71.23
8
A
TYR
2
61.55
-48.43
8
A
ILE
40
81.21
-52.78
8
A
PHE
52
-143.22
38.44
8
A
LYS
74
62.56
83.76
8
A
ILE
75
-141.39
-19.05
8
A
CYS
76
-83.35
-92.64
9
A
GLN
21
33.35
59.23
9
A
PRO
22
-78.99
-167.67
9
A
ILE
40
81.12
-54.44
9
A
PHE
52
-150.97
38.02
9
A
LYS
74
70.79
78.75
9
A
ILE
75
-140.91
-26.13
10
A
PHE
3
-39.28
-38.50
10
A
GLN
21
-18.22
88.62
10
A
ILE
40
81.16
-62.72
10
A
PHE
52
-154.92
38.78
10
A
LYS
74
72.77
85.60
10
A
CYS
76
-83.56
-89.54
10
A
LYS
77
-161.03
77.47
11
A
PHE
3
-36.07
-38.54
11
A
GLN
21
5.44
75.11
11
A
ILE
40
75.41
-59.84
11
A
PHE
52
-142.07
40.99
11
A
LYS
74
79.99
80.92
11
A
ILE
75
-140.70
-22.95
11
A
CYS
76
-83.88
-92.60
11
A
LYS
77
-164.82
77.84
12
A
GLN
21
26.14
62.15
12
A
PRO
22
-79.44
-168.47
12
A
ILE
40
75.56
-57.69
12
A
LYS
74
59.42
85.47
12
A
CYS
76
-108.64
-156.33
13
A
ILE
40
80.83
-58.82
13
A
PHE
52
-145.75
39.00
13
A
LYS
74
70.29
69.43
13
A
CYS
76
-86.64
-158.60
14
A
GLN
21
-14.60
87.97
14
A
ILE
40
80.93
-57.09
14
A
PHE
52
-144.05
51.05
14
A
LYS
74
58.31
81.05
14
A
ILE
75
-140.93
-19.61
15
A
ILE
40
80.79
-61.74
15
A
LYS
74
58.83
84.93
15
A
ILE
75
-140.79
-22.46
16
A
GLN
21
30.15
58.91
16
A
ILE
40
75.24
-64.21
16
A
PHE
52
-143.82
38.40
16
A
LYS
74
69.55
75.55
16
A
ILE
75
-141.01
-19.87
16
A
CYS
76
-83.66
-87.15
16
A
LYS
77
-152.37
71.08
17
A
TYR
2
64.68
-42.12
17
A
ILE
40
72.76
-58.40
17
A
PHE
52
-141.35
38.35
17
A
LYS
74
61.54
82.27
17
A
ILE
75
-141.20
-20.42
17
A
LYS
77
145.30
81.26
18
A
GLN
21
31.82
58.98
18
A
ILE
40
81.15
-57.62
18
A
LYS
74
63.75
66.77
18
A
CYS
76
-83.49
-87.00
18
A
LYS
77
-169.02
64.34
19
A
GLN
21
35.04
59.41
19
A
PRO
22
-77.26
-167.91
19
A
ILE
40
70.79
-56.88
19
A
PHE
52
-142.56
38.79
19
A
LYS
74
58.65
76.53
19
A
LYS
77
57.66
82.08
20
A
TYR
2
62.19
-41.23
20
A
ILE
40
78.47
-57.24
20
A
PHE
52
-140.85
38.94
20
A
LYS
74
66.32
73.65
20
A
ILE
75
-140.97
-19.29
20
A
CYS
76
-103.24
-98.68
NK-LYSIN FROM PIG, NMR, 20 STRUCTURES
1
Y
N
A
PHE
3
A
PHE
3
HELX_P
A
VAL
18
A
VAL
18
1
1
16
A
GLU
24
A
GLU
24
HELX_P
A
LYS
37
A
LYS
37
1
2
14
A
ARG
42
A
ARG
42
HELX_P
A
SER
51
A
SER
51
1
3
10
A
LEU
53
A
LEU
53
HELX_P
A
LEU
61
A
LEU
61
1
4
9
A
PRO
66
A
PRO
66
HELX_P
A
ASP
72
A
ASP
72
1
5
7
disulf
2.039
A
CYS
4
A
SG
CYS
4
1_555
A
CYS
76
A
SG
CYS
76
1_555
disulf
2.030
A
CYS
7
A
SG
CYS
7
1_555
A
CYS
70
A
SG
CYS
70
1_555
disulf
2.012
A
CYS
35
A
SG
CYS
35
1_555
A
CYS
45
A
SG
CYS
45
1_555
SAPOSIN FOLD
SAPOSIN FOLD, ANTIBACTERIAL PEPTIDE, TUMOUROLYTIC PEPTIDE
NKL_PIG
UNP
1
1
Q29075
PGLAFSGLTPEHSALARAHPCDGEQFCQNLAPEDPQGDQLLQREELGLICESCRKIIQKLEDMVGPQPNEDTVTQAASRV
CDKMKILRGVCKKIMRTFLRRISKDILTGKKPQAICVDIKICKEKTGLI
47
124
1NKL
1
78
Q29075
A
1
1
78
1
LEU
conflict
TYR
2
1NKL
A
Q29075
UNP
48
2
1
ILE
conflict
PHE
3
1NKL
A
Q29075
UNP
49
3
1
ARG
conflict
GLN
33
1NKL
A
Q29075
UNP
79
33
1
MET
conflict
LEU
38
1NKL
A
Q29075
UNP
84
38
1
VAL
conflict
LEU
44
1NKL
A
Q29075
UNP
90
44
1
THR
conflict
SER
51
1NKL
A
Q29075
UNP
97
51
1
LYS
conflict
TRP
58
1NKL
A
Q29075
UNP
104
58
1
P 1