0.013535
0.000000
0.000000
0.000000
0.013535
0.000000
0.000000
0.000000
0.004620
0.00000
0.00000
0.00000
Khayat, R.
Batra, R.
Qian, C.
Halmos, T.
Bailey, M.
Tong, L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
73.880
73.880
216.430
C37 H63 N7 O7
717.939
N-(6-aminohexanoyl)-3-methyl-L-valyl-3-methyl-L-valyl-N~1~-[(2S,3S)-3-hydroxy-4-oxo-4-{[(1R)-1-phenylpropyl]amino}butan-2-yl]-N~4~,N~4~-dimethyl-L-aspartamide
BILC 408
peptide-like
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
C
N
3
N
O
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
C
N
8
N
N
N
9
N
N
N
10
S
C
N
11
N
C
N
12
N
C
N
13
N
C
N
14
N
C
N
15
N
C
N
16
N
O
N
17
N
N
N
18
S
C
N
19
N
C
N
20
N
C
N
21
N
C
N
22
N
C
N
23
N
C
N
24
N
O
N
25
N
N
N
26
S
C
N
27
N
C
N
28
N
C
N
29
N
O
N
30
N
N
N
31
N
C
N
32
N
C
N
33
N
C
N
34
N
O
N
35
N
N
N
36
S
C
N
37
S
C
N
38
N
O
N
39
N
C
N
40
N
C
N
41
N
O
N
42
N
N
N
43
R
C
N
44
N
C
N
45
N
C
Y
46
N
C
Y
47
N
C
Y
48
N
C
Y
49
N
C
Y
50
N
C
Y
51
N
C
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
N
N
116
S
C
N
117
N
C
N
118
N
O
N
119
N
C
N
120
N
O
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
S
C
N
130
N
C
N
131
N
O
N
132
N
C
N
133
N
C
N
134
N
C
N
135
N
N
N
136
N
C
N
137
N
N
N
138
N
N
N
139
N
O
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
N
N
156
S
C
N
157
N
C
N
158
N
O
N
159
N
C
N
160
N
C
N
161
N
O
N
162
N
N
N
163
N
O
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
N
N
173
S
C
N
174
N
C
N
175
N
O
N
176
N
C
N
177
N
C
N
178
N
O
N
179
N
O
N
180
N
O
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
N
N
189
R
C
N
190
N
C
N
191
N
O
N
192
N
C
N
193
N
S
N
194
N
O
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
N
N
223
S
C
N
224
N
C
N
225
N
O
N
226
N
C
N
227
N
C
N
228
N
C
N
229
N
O
N
230
N
O
N
231
N
O
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
N
N
242
N
C
N
243
N
C
N
244
N
O
N
245
N
O
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
Y
256
N
C
Y
257
N
N
Y
258
N
C
Y
259
N
C
Y
260
N
N
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
N
N
273
S
C
N
274
N
C
N
275
N
O
N
276
S
C
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
N
N
295
S
C
N
296
N
C
N
297
N
O
N
298
N
C
N
299
N
C
N
300
N
C
N
301
N
C
N
302
N
O
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
N
N
317
S
C
N
318
N
C
N
319
N
O
N
320
N
C
N
321
N
C
N
322
N
C
N
323
N
C
N
324
N
N
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
N
N
342
S
C
N
343
N
C
N
344
N
O
N
345
N
C
N
346
N
C
N
347
N
S
N
348
N
C
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
N
N
362
S
C
N
363
N
C
N
364
N
O
N
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
N
372
N
O
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
N
N
385
S
C
N
386
N
C
N
387
N
O
N
388
N
C
N
389
N
C
N
390
N
C
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
N
N
402
S
C
N
403
N
C
N
404
N
O
N
405
N
C
N
406
N
O
N
407
N
O
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
N
N
416
S
C
N
417
N
C
N
418
N
O
N
419
R
C
N
420
N
O
N
421
N
C
N
422
N
O
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
N
N
433
S
C
N
434
N
C
N
435
N
O
N
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
N
Y
441
N
C
Y
442
N
C
Y
443
N
C
Y
444
N
C
Y
445
N
C
N
446
N
O
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
N
N
460
S
C
N
461
N
C
N
462
N
O
N
463
N
C
Y
464
N
C
Y
465
N
C
Y
466
N
C
Y
467
N
C
Y
468
N
C
Y
469
N
C
N
470
N
O
N
471
N
O
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
N
N
484
S
C
N
485
N
C
N
486
N
O
N
487
N
C
N
488
N
C
N
489
N
C
N
490
N
O
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
doub
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
doub
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
doub
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
doub
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
Y
102
N
doub
Y
103
N
sing
Y
104
N
sing
N
105
N
sing
Y
106
N
doub
N
107
N
sing
Y
108
N
sing
N
109
N
sing
Y
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
doub
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
doub
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
doub
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
Y
254
N
sing
Y
255
N
doub
Y
256
N
doub
N
257
N
sing
Y
258
N
sing
N
259
N
sing
Y
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
doub
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
Y
360
N
doub
Y
361
N
sing
Y
362
N
sing
N
363
N
sing
Y
364
N
doub
N
365
N
sing
Y
366
N
doub
N
367
N
sing
Y
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
doub
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
doub
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
doub
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
doub
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
Y
429
N
doub
Y
430
N
sing
Y
431
N
sing
N
432
N
sing
Y
433
N
doub
Y
434
N
sing
Y
435
N
sing
N
436
N
sing
Y
437
N
sing
Y
438
N
doub
N
439
N
sing
Y
440
N
doub
N
441
N
sing
Y
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
doub
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
Y
457
N
doub
Y
458
N
sing
Y
459
N
sing
N
460
N
sing
Y
461
N
doub
N
462
N
sing
Y
463
N
doub
N
464
N
sing
Y
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
doub
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
42
885
891
10.1021/bi027045s
12549906
Structural and Biochemical Studies of Inhibitor Binding to Human Cytomegalovirus Protease
2003
10.2210/pdb1nkm/pdb
pdb_00001nkm
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2000-11-20
ADSC QUANTUM 4
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.97620
1.0
X4A
NSLS
0.97620
SYNCHROTRON
NSLS BEAMLINE X4A
28130.547
Assemblin
3.4.21.97
A143Q
2
man
polymer
Residue peptide of the Peptidomimetic Inhibitor was chemically synthesized.
717.939
N-(6-aminohexanoyl)-3-methyl-L-valyl-3-methyl-L-valyl-N~1~-[(2S,3S)-3-hydroxy-4-oxo-4-{[(1R)-1-phenylpropyl]amino}butan-2-yl]-N~4~,N~4~-dimethyl-L-aspartamide
1
syn
non-polymer
Protease, Capsid assembly protein
no
no
MTMDEQQSQAVAPVYVGGFLARYDQSPDEAELLLPRDVVEHWLHAQGQGQPSLSVALPLNINHDDTAVVGHVAAMQSVRD
GLFCLGCVTSPRFLEIVRRASEKSELVSRGPVSPLQPDKVVEFLSGSYAGLSLSSRRCDDVEQATSLSGSETTPFKHVAL
CSVGRRRGTLAVYGRDPEWVTQRFPDLTAADRDGLRAQWQRCGSTAVDASGDPFRSDSYGLLGNSVDALYIRERLPKLRY
DKQLVGVTERESYVKA
MTMDEQQSQAVAPVYVGGFLARYDQSPDEAELLLPRDVVEHWLHAQGQGQPSLSVALPLNINHDDTAVVGHVAAMQSVRD
GLFCLGCVTSPRFLEIVRRASEKSELVSRGPVSPLQPDKVVEFLSGSYAGLSLSSRRCDDVEQATSLSGSETTPFKHVAL
CSVGRRRGTLAVYGRDPEWVTQRFPDLTAADRDGLRAQWQRCGSTAVDASGDPFRSDSYGLLGNSVDALYIRERLPKLRY
DKQLVGVTERESYVKA
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human cytomegalovirus
sample
UL80, APNG
10359
Human herpesvirus 5
562
Escherichia coli
1
2.60
52.65
VAPOR DIFFUSION, HANGING DROP
7.0
PEG 4000, HEPES, EDTA, Sodium Chloride, Sodium Sulfate, DTT, Spermine_HCl, Glycerol, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
database_2
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
entity
pdbx_entity_src_syn
repository
Initial release
Version format compliance
Atomic model
Database references
Derived calculations
Non-polymer description
Source and taxonomy
Structure summary
Version format compliance
Other
Database references
Derived calculations
Data collection
Source and taxonomy
Structure summary
1
0
2003-02-11
1
1
2008-04-29
1
2
2011-07-13
1
3
2012-12-12
1
4
2021-10-27
1
5
2024-03-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_entity.details
RCSB
Y
RCSB
2003-01-03
REL
0FP
N-(6-aminohexanoyl)-3-methyl-L-valyl-3-methyl-L-valyl-N~1~-[(2S,3S)-3-hydroxy-4-oxo-4-{[(1R)-1-phenylpropyl]amino}butan-2-yl]-N~4~,N~4~-dimethyl-L-aspartamide
THE INHIBITOR 0FP IS COVALENTLY CONNECTED AT CARBON C4
TO THE ACTIVE SITE SERINE A 132 VIA HEMIKETAL LINKAGE
Inhibitor
N-(6-aminohexanoyl)-3-methyl-L-valyl-3-methyl-L-valyl-N~4~,N~4~-dimethyl-N~1~-[(1R)-1-methyl-2,3-dioxo-3-{[(1S)-1-
phenylpropyl]amino}propyl]-L-aspartamide
Peptide-like
DNL
260
2
0FP
0FP
260
A
n
1
1
A
n
2
2
A
n
3
3
A
ASP
4
n
4
ASP
4
A
GLU
5
n
5
GLU
5
A
GLN
6
n
6
GLN
6
A
GLN
7
n
7
GLN
7
A
SER
8
n
8
SER
8
A
GLN
9
n
9
GLN
9
A
ALA
10
n
10
ALA
10
A
VAL
11
n
11
VAL
11
A
ALA
12
n
12
ALA
12
A
PRO
13
n
13
PRO
13
A
VAL
14
n
14
VAL
14
A
TYR
15
n
15
TYR
15
A
VAL
16
n
16
VAL
16
A
GLY
17
n
17
GLY
17
A
GLY
18
n
18
GLY
18
A
PHE
19
n
19
PHE
19
A
LEU
20
n
20
LEU
20
A
ALA
21
n
21
ALA
21
A
ARG
22
n
22
ARG
22
A
TYR
23
n
23
TYR
23
A
ASP
24
n
24
ASP
24
A
GLN
25
n
25
GLN
25
A
SER
26
n
26
SER
26
A
PRO
27
n
27
PRO
27
A
ASP
28
n
28
ASP
28
A
GLU
29
n
29
GLU
29
A
ALA
30
n
30
ALA
30
A
GLU
31
n
31
GLU
31
A
LEU
32
n
32
LEU
32
A
LEU
33
n
33
LEU
33
A
LEU
34
n
34
LEU
34
A
PRO
35
n
35
PRO
35
A
ARG
36
n
36
ARG
36
A
ASP
37
n
37
ASP
37
A
VAL
38
n
38
VAL
38
A
VAL
39
n
39
VAL
39
A
GLU
40
n
40
GLU
40
A
HIS
41
n
41
HIS
41
A
TRP
42
n
42
TRP
42
A
LEU
43
n
43
LEU
43
A
HIS
44
n
44
HIS
44
A
ALA
45
n
45
ALA
45
A
GLN
46
n
46
GLN
46
A
n
47
47
A
n
48
48
A
n
49
49
A
n
50
50
A
n
51
51
A
n
52
52
A
n
53
53
A
n
54
54
A
n
55
55
A
ALA
56
n
56
ALA
56
A
LEU
57
n
57
LEU
57
A
PRO
58
n
58
PRO
58
A
LEU
59
n
59
LEU
59
A
ASN
60
n
60
ASN
60
A
ILE
61
n
61
ILE
61
A
ASN
62
n
62
ASN
62
A
HIS
63
n
63
HIS
63
A
ASP
64
n
64
ASP
64
A
ASP
65
n
65
ASP
65
A
THR
66
n
66
THR
66
A
ALA
67
n
67
ALA
67
A
VAL
68
n
68
VAL
68
A
VAL
69
n
69
VAL
69
A
GLY
70
n
70
GLY
70
A
HIS
71
n
71
HIS
71
A
VAL
72
n
72
VAL
72
A
ALA
73
n
73
ALA
73
A
ALA
74
n
74
ALA
74
A
MET
75
n
75
MET
75
A
GLN
76
n
76
GLN
76
A
SER
77
n
77
SER
77
A
VAL
78
n
78
VAL
78
A
ARG
79
n
79
ARG
79
A
ASP
80
n
80
ASP
80
A
GLY
81
n
81
GLY
81
A
LEU
82
n
82
LEU
82
A
PHE
83
n
83
PHE
83
A
CYS
84
n
84
CYS
84
A
LEU
85
n
85
LEU
85
A
GLY
86
n
86
GLY
86
A
CYS
87
n
87
CYS
87
A
VAL
88
n
88
VAL
88
A
THR
89
n
89
THR
89
A
SER
90
n
90
SER
90
A
PRO
91
n
91
PRO
91
A
ARG
92
n
92
ARG
92
A
PHE
93
n
93
PHE
93
A
LEU
94
n
94
LEU
94
A
GLU
95
n
95
GLU
95
A
ILE
96
n
96
ILE
96
A
VAL
97
n
97
VAL
97
A
ARG
98
n
98
ARG
98
A
ARG
99
n
99
ARG
99
A
ALA
100
n
100
ALA
100
A
SER
101
n
101
SER
101
A
GLU
102
n
102
GLU
102
A
LYS
103
n
103
LYS
103
A
SER
104
n
104
SER
104
A
GLU
105
n
105
GLU
105
A
LEU
106
n
106
LEU
106
A
VAL
107
n
107
VAL
107
A
SER
108
n
108
SER
108
A
ARG
109
n
109
ARG
109
A
GLY
110
n
110
GLY
110
A
PRO
111
n
111
PRO
111
A
VAL
112
n
112
VAL
112
A
SER
113
n
113
SER
113
A
PRO
114
n
114
PRO
114
A
LEU
115
n
115
LEU
115
A
GLN
116
n
116
GLN
116
A
PRO
117
n
117
PRO
117
A
ASP
118
n
118
ASP
118
A
LYS
119
n
119
LYS
119
A
VAL
120
n
120
VAL
120
A
VAL
121
n
121
VAL
121
A
GLU
122
n
122
GLU
122
A
PHE
123
n
123
PHE
123
A
LEU
124
n
124
LEU
124
A
SER
125
n
125
SER
125
A
GLY
126
n
126
GLY
126
A
SER
127
n
127
SER
127
A
TYR
128
n
128
TYR
128
A
ALA
129
n
129
ALA
129
A
GLY
130
n
130
GLY
130
A
LEU
131
n
131
LEU
131
A
SER
132
n
132
SER
132
A
LEU
133
n
133
LEU
133
A
SER
134
n
134
SER
134
A
SER
135
n
135
SER
135
A
ARG
136
n
136
ARG
136
A
ARG
137
n
137
ARG
137
A
n
138
138
A
n
139
139
A
n
140
140
A
n
141
141
A
n
142
142
A
n
143
143
A
n
144
144
A
n
145
145
A
n
146
146
A
n
147
147
A
n
148
148
A
n
149
149
A
n
150
150
A
n
151
151
A
THR
152
n
152
THR
152
A
THR
153
n
153
THR
153
A
PRO
154
n
154
PRO
154
A
PHE
155
n
155
PHE
155
A
LYS
156
n
156
LYS
156
A
HIS
157
n
157
HIS
157
A
VAL
158
n
158
VAL
158
A
ALA
159
n
159
ALA
159
A
LEU
160
n
160
LEU
160
A
CYS
161
n
161
CYS
161
A
SER
162
n
162
SER
162
A
VAL
163
n
163
VAL
163
A
GLY
164
n
164
GLY
164
A
ARG
165
n
165
ARG
165
A
ARG
166
n
166
ARG
166
A
ARG
167
n
167
ARG
167
A
GLY
168
n
168
GLY
168
A
THR
169
n
169
THR
169
A
LEU
170
n
170
LEU
170
A
ALA
171
n
171
ALA
171
A
VAL
172
n
172
VAL
172
A
TYR
173
n
173
TYR
173
A
GLY
174
n
174
GLY
174
A
ARG
175
n
175
ARG
175
A
ASP
176
n
176
ASP
176
A
PRO
177
n
177
PRO
177
A
GLU
178
n
178
GLU
178
A
TRP
179
n
179
TRP
179
A
VAL
180
n
180
VAL
180
A
THR
181
n
181
THR
181
A
GLN
182
n
182
GLN
182
A
ARG
183
n
183
ARG
183
A
PHE
184
n
184
PHE
184
A
PRO
185
n
185
PRO
185
A
ASP
186
n
186
ASP
186
A
LEU
187
n
187
LEU
187
A
THR
188
n
188
THR
188
A
ALA
189
n
189
ALA
189
A
ALA
190
n
190
ALA
190
A
ASP
191
n
191
ASP
191
A
ARG
192
n
192
ARG
192
A
ASP
193
n
193
ASP
193
A
GLY
194
n
194
GLY
194
A
LEU
195
n
195
LEU
195
A
ARG
196
n
196
ARG
196
A
ALA
197
n
197
ALA
197
A
GLN
198
n
198
GLN
198
A
TRP
199
n
199
TRP
199
A
GLN
200
n
200
GLN
200
A
n
201
201
A
n
202
202
A
n
203
203
A
n
204
204
A
n
205
205
A
n
206
206
A
n
207
207
A
n
208
208
A
n
209
209
A
n
210
210
A
GLY
211
n
211
GLY
211
A
ASP
212
n
212
ASP
212
A
PRO
213
n
213
PRO
213
A
PHE
214
n
214
PHE
214
A
ARG
215
n
215
ARG
215
A
SER
216
n
216
SER
216
A
ASP
217
n
217
ASP
217
A
SER
218
n
218
SER
218
A
TYR
219
n
219
TYR
219
A
GLY
220
n
220
GLY
220
A
LEU
221
n
221
LEU
221
A
LEU
222
n
222
LEU
222
A
GLY
223
n
223
GLY
223
A
ASN
224
n
224
ASN
224
A
SER
225
n
225
SER
225
A
VAL
226
n
226
VAL
226
A
ASP
227
n
227
ASP
227
A
ALA
228
n
228
ALA
228
A
LEU
229
n
229
LEU
229
A
TYR
230
n
230
TYR
230
A
ILE
231
n
231
ILE
231
A
ARG
232
n
232
ARG
232
A
GLU
233
n
233
GLU
233
A
ARG
234
n
234
ARG
234
A
LEU
235
n
235
LEU
235
A
PRO
236
n
236
PRO
236
A
LYS
237
n
237
LYS
237
A
LEU
238
n
238
LEU
238
A
ARG
239
n
239
ARG
239
A
TYR
240
n
240
TYR
240
A
ASP
241
n
241
ASP
241
A
LYS
242
n
242
LYS
242
A
GLN
243
n
243
GLN
243
A
LEU
244
n
244
LEU
244
A
VAL
245
n
245
VAL
245
A
GLY
246
n
246
GLY
246
A
VAL
247
n
247
VAL
247
A
THR
248
n
248
THR
248
A
GLU
249
n
249
GLU
249
A
ARG
250
n
250
ARG
250
A
GLU
251
n
251
GLU
251
A
SER
252
n
252
SER
252
A
TYR
253
n
253
TYR
253
A
VAL
254
n
254
VAL
254
A
LYS
255
n
255
LYS
255
A
ALA
256
n
256
ALA
256
A
n
1
301
B
n
2
302
B
n
3
303
B
ASP
304
n
4
ASP
304
B
GLU
305
n
5
GLU
305
B
GLN
306
n
6
GLN
306
B
GLN
307
n
7
GLN
307
B
SER
308
n
8
SER
308
B
GLN
309
n
9
GLN
309
B
ALA
310
n
10
ALA
310
B
VAL
311
n
11
VAL
311
B
ALA
312
n
12
ALA
312
B
PRO
313
n
13
PRO
313
B
VAL
314
n
14
VAL
314
B
TYR
315
n
15
TYR
315
B
VAL
316
n
16
VAL
316
B
GLY
317
n
17
GLY
317
B
GLY
318
n
18
GLY
318
B
PHE
319
n
19
PHE
319
B
LEU
320
n
20
LEU
320
B
ALA
321
n
21
ALA
321
B
ARG
322
n
22
ARG
322
B
TYR
323
n
23
TYR
323
B
ASP
324
n
24
ASP
324
B
GLN
325
n
25
GLN
325
B
SER
326
n
26
SER
326
B
PRO
327
n
27
PRO
327
B
ASP
328
n
28
ASP
328
B
GLU
329
n
29
GLU
329
B
ALA
330
n
30
ALA
330
B
GLU
331
n
31
GLU
331
B
LEU
332
n
32
LEU
332
B
LEU
333
n
33
LEU
333
B
LEU
334
n
34
LEU
334
B
PRO
335
n
35
PRO
335
B
ARG
336
n
36
ARG
336
B
ASP
337
n
37
ASP
337
B
VAL
338
n
38
VAL
338
B
VAL
339
n
39
VAL
339
B
GLU
340
n
40
GLU
340
B
HIS
341
n
41
HIS
341
B
TRP
342
n
42
TRP
342
B
LEU
343
n
43
LEU
343
B
HIS
344
n
44
HIS
344
B
ALA
345
n
45
ALA
345
B
GLN
346
n
46
GLN
346
B
n
47
347
B
n
48
348
B
n
49
349
B
n
50
350
B
n
51
351
B
n
52
352
B
LEU
353
n
53
LEU
353
B
SER
354
n
54
SER
354
B
VAL
355
n
55
VAL
355
B
ALA
356
n
56
ALA
356
B
LEU
357
n
57
LEU
357
B
PRO
358
n
58
PRO
358
B
LEU
359
n
59
LEU
359
B
ASN
360
n
60
ASN
360
B
ILE
361
n
61
ILE
361
B
ASN
362
n
62
ASN
362
B
HIS
363
n
63
HIS
363
B
ASP
364
n
64
ASP
364
B
ASP
365
n
65
ASP
365
B
THR
366
n
66
THR
366
B
ALA
367
n
67
ALA
367
B
VAL
368
n
68
VAL
368
B
VAL
369
n
69
VAL
369
B
GLY
370
n
70
GLY
370
B
HIS
371
n
71
HIS
371
B
VAL
372
n
72
VAL
372
B
ALA
373
n
73
ALA
373
B
ALA
374
n
74
ALA
374
B
MET
375
n
75
MET
375
B
GLN
376
n
76
GLN
376
B
SER
377
n
77
SER
377
B
VAL
378
n
78
VAL
378
B
ARG
379
n
79
ARG
379
B
ASP
380
n
80
ASP
380
B
GLY
381
n
81
GLY
381
B
LEU
382
n
82
LEU
382
B
PHE
383
n
83
PHE
383
B
CYS
384
n
84
CYS
384
B
LEU
385
n
85
LEU
385
B
GLY
386
n
86
GLY
386
B
CYS
387
n
87
CYS
387
B
VAL
388
n
88
VAL
388
B
THR
389
n
89
THR
389
B
SER
390
n
90
SER
390
B
PRO
391
n
91
PRO
391
B
ARG
392
n
92
ARG
392
B
PHE
393
n
93
PHE
393
B
LEU
394
n
94
LEU
394
B
GLU
395
n
95
GLU
395
B
ILE
396
n
96
ILE
396
B
VAL
397
n
97
VAL
397
B
ARG
398
n
98
ARG
398
B
ARG
399
n
99
ARG
399
B
ALA
400
n
100
ALA
400
B
SER
401
n
101
SER
401
B
GLU
402
n
102
GLU
402
B
LYS
403
n
103
LYS
403
B
SER
404
n
104
SER
404
B
GLU
405
n
105
GLU
405
B
LEU
406
n
106
LEU
406
B
VAL
407
n
107
VAL
407
B
SER
408
n
108
SER
408
B
ARG
409
n
109
ARG
409
B
GLY
410
n
110
GLY
410
B
PRO
411
n
111
PRO
411
B
VAL
412
n
112
VAL
412
B
SER
413
n
113
SER
413
B
PRO
414
n
114
PRO
414
B
LEU
415
n
115
LEU
415
B
GLN
416
n
116
GLN
416
B
PRO
417
n
117
PRO
417
B
ASP
418
n
118
ASP
418
B
LYS
419
n
119
LYS
419
B
VAL
420
n
120
VAL
420
B
VAL
421
n
121
VAL
421
B
GLU
422
n
122
GLU
422
B
PHE
423
n
123
PHE
423
B
LEU
424
n
124
LEU
424
B
SER
425
n
125
SER
425
B
GLY
426
n
126
GLY
426
B
SER
427
n
127
SER
427
B
TYR
428
n
128
TYR
428
B
ALA
429
n
129
ALA
429
B
GLY
430
n
130
GLY
430
B
LEU
431
n
131
LEU
431
B
SER
432
n
132
SER
432
B
LEU
433
n
133
LEU
433
B
SER
434
n
134
SER
434
B
n
135
435
B
n
136
436
B
n
137
437
B
n
138
438
B
n
139
439
B
n
140
440
B
n
141
441
B
n
142
442
B
n
143
443
B
n
144
444
B
n
145
445
B
n
146
446
B
n
147
447
B
n
148
448
B
n
149
449
B
n
150
450
B
n
151
451
B
n
152
452
B
THR
453
n
153
THR
453
B
PRO
454
n
154
PRO
454
B
PHE
455
n
155
PHE
455
B
LYS
456
n
156
LYS
456
B
HIS
457
n
157
HIS
457
B
VAL
458
n
158
VAL
458
B
ALA
459
n
159
ALA
459
B
LEU
460
n
160
LEU
460
B
CYS
461
n
161
CYS
461
B
SER
462
n
162
SER
462
B
VAL
463
n
163
VAL
463
B
GLY
464
n
164
GLY
464
B
ARG
465
n
165
ARG
465
B
ARG
466
n
166
ARG
466
B
ARG
467
n
167
ARG
467
B
GLY
468
n
168
GLY
468
B
THR
469
n
169
THR
469
B
LEU
470
n
170
LEU
470
B
ALA
471
n
171
ALA
471
B
VAL
472
n
172
VAL
472
B
TYR
473
n
173
TYR
473
B
GLY
474
n
174
GLY
474
B
ARG
475
n
175
ARG
475
B
ASP
476
n
176
ASP
476
B
PRO
477
n
177
PRO
477
B
GLU
478
n
178
GLU
478
B
TRP
479
n
179
TRP
479
B
VAL
480
n
180
VAL
480
B
THR
481
n
181
THR
481
B
GLN
482
n
182
GLN
482
B
ARG
483
n
183
ARG
483
B
PHE
484
n
184
PHE
484
B
PRO
485
n
185
PRO
485
B
ASP
486
n
186
ASP
486
B
LEU
487
n
187
LEU
487
B
THR
488
n
188
THR
488
B
ALA
489
n
189
ALA
489
B
ALA
490
n
190
ALA
490
B
ASP
491
n
191
ASP
491
B
ARG
492
n
192
ARG
492
B
ASP
493
n
193
ASP
493
B
GLY
494
n
194
GLY
494
B
LEU
495
n
195
LEU
495
B
ARG
496
n
196
ARG
496
B
ALA
497
n
197
ALA
497
B
GLN
498
n
198
GLN
498
B
TRP
499
n
199
TRP
499
B
GLN
500
n
200
GLN
500
B
n
201
501
B
n
202
502
B
n
203
503
B
n
204
504
B
n
205
505
B
n
206
506
B
n
207
507
B
n
208
508
B
n
209
509
B
SER
510
n
210
SER
510
B
GLY
511
n
211
GLY
511
B
ASP
512
n
212
ASP
512
B
PRO
513
n
213
PRO
513
B
PHE
514
n
214
PHE
514
B
ARG
515
n
215
ARG
515
B
SER
516
n
216
SER
516
B
ASP
517
n
217
ASP
517
B
SER
518
n
218
SER
518
B
TYR
519
n
219
TYR
519
B
GLY
520
n
220
GLY
520
B
LEU
521
n
221
LEU
521
B
LEU
522
n
222
LEU
522
B
GLY
523
n
223
GLY
523
B
ASN
524
n
224
ASN
524
B
SER
525
n
225
SER
525
B
VAL
526
n
226
VAL
526
B
ASP
527
n
227
ASP
527
B
ALA
528
n
228
ALA
528
B
LEU
529
n
229
LEU
529
B
TYR
530
n
230
TYR
530
B
ILE
531
n
231
ILE
531
B
ARG
532
n
232
ARG
532
B
GLU
533
n
233
GLU
533
B
ARG
534
n
234
ARG
534
B
LEU
535
n
235
LEU
535
B
PRO
536
n
236
PRO
536
B
LYS
537
n
237
LYS
537
B
LEU
538
n
238
LEU
538
B
ARG
539
n
239
ARG
539
B
TYR
540
n
240
TYR
540
B
ASP
541
n
241
ASP
541
B
LYS
542
n
242
LYS
542
B
GLN
543
n
243
GLN
543
B
LEU
544
n
244
LEU
544
B
VAL
545
n
245
VAL
545
B
GLY
546
n
246
GLY
546
B
VAL
547
n
247
VAL
547
B
THR
548
n
248
THR
548
B
GLU
549
n
249
GLU
549
B
ARG
550
n
250
ARG
550
B
GLU
551
n
251
GLU
551
B
SER
552
n
252
SER
552
B
TYR
553
n
253
TYR
553
B
VAL
554
n
254
VAL
554
B
LYS
555
n
255
LYS
555
B
ALA
556
n
256
ALA
556
B
author_and_software_defined_assembly
PISA
2
dimeric
4460
-17
19720
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
SER
132
A
N
SER
132
A
O
ALA
159
A
O
ALA
159
A
O
LEU
160
A
O
LEU
160
A
N
ASN
60
A
N
ASN
60
A
N
ILE
61
A
N
ILE
61
A
O
ASP
64
A
O
ASP
64
A
N
GLN
76
A
N
GLN
76
A
O
PHE
83
A
O
PHE
83
A
O
VAL
88
A
O
VAL
88
A
N
VAL
14
A
N
VAL
14
A
N
TYR
15
A
N
TYR
15
A
O
GLY
174
A
O
GLY
174
B
N
SER
432
B
N
SER
132
B
O
ALA
459
B
O
ALA
159
B
O
LEU
460
B
O
LEU
160
B
N
ASN
360
B
N
ASN
60
B
N
LEU
359
B
N
LEU
59
B
O
VAL
369
B
O
VAL
69
B
N
HIS
371
B
N
HIS
71
B
O
CYS
387
B
O
CYS
87
B
O
VAL
388
B
O
VAL
88
B
N
VAL
314
B
N
VAL
14
B
N
TYR
315
B
N
TYR
15
B
O
GLY
474
B
O
GLY
174
1
A
MET
1
A
MET
1
1
Y
1
A
THR
2
A
THR
2
1
Y
1
A
MET
3
A
MET
3
1
Y
1
A
GLY
47
A
GLY
47
1
Y
1
A
GLN
48
A
GLN
48
1
Y
1
A
GLY
49
A
GLY
49
1
Y
1
A
GLN
50
A
GLN
50
1
Y
1
A
PRO
51
A
PRO
51
1
Y
1
A
SER
52
A
SER
52
1
Y
1
A
LEU
53
A
LEU
53
1
Y
1
A
SER
54
A
SER
54
1
Y
1
A
VAL
55
A
VAL
55
1
Y
1
A
CYS
138
A
CYS
138
1
Y
1
A
ASP
139
A
ASP
139
1
Y
1
A
ASP
140
A
ASP
140
1
Y
1
A
VAL
141
A
VAL
141
1
Y
1
A
GLU
142
A
GLU
142
1
Y
1
A
GLN
143
A
GLN
143
1
Y
1
A
ALA
144
A
ALA
144
1
Y
1
A
THR
145
A
THR
145
1
Y
1
A
SER
146
A
SER
146
1
Y
1
A
LEU
147
A
LEU
147
1
Y
1
A
SER
148
A
SER
148
1
Y
1
A
GLY
149
A
GLY
149
1
Y
1
A
SER
150
A
SER
150
1
Y
1
A
GLU
151
A
GLU
151
1
Y
1
A
ARG
201
A
ARG
201
1
Y
1
A
CYS
202
A
CYS
202
1
Y
1
A
GLY
203
A
GLY
203
1
Y
1
A
SER
204
A
SER
204
1
Y
1
A
THR
205
A
THR
205
1
Y
1
A
ALA
206
A
ALA
206
1
Y
1
A
VAL
207
A
VAL
207
1
Y
1
A
ASP
208
A
ASP
208
1
Y
1
A
ALA
209
A
ALA
209
1
Y
1
A
SER
210
A
SER
210
1
Y
1
B
MET
301
B
MET
1
1
Y
1
B
THR
302
B
THR
2
1
Y
1
B
MET
303
B
MET
3
1
Y
1
B
GLY
347
B
GLY
47
1
Y
1
B
GLN
348
B
GLN
48
1
Y
1
B
GLY
349
B
GLY
49
1
Y
1
B
GLN
350
B
GLN
50
1
Y
1
B
PRO
351
B
PRO
51
1
Y
1
B
SER
352
B
SER
52
1
Y
1
B
SER
435
B
SER
135
1
Y
1
B
ARG
436
B
ARG
136
1
Y
1
B
ARG
437
B
ARG
137
1
Y
1
B
CYS
438
B
CYS
138
1
Y
1
B
ASP
439
B
ASP
139
1
Y
1
B
ASP
440
B
ASP
140
1
Y
1
B
VAL
441
B
VAL
141
1
Y
1
B
GLU
442
B
GLU
142
1
Y
1
B
GLN
443
B
GLN
143
1
Y
1
B
ALA
444
B
ALA
144
1
Y
1
B
THR
445
B
THR
145
1
Y
1
B
SER
446
B
SER
146
1
Y
1
B
LEU
447
B
LEU
147
1
Y
1
B
SER
448
B
SER
148
1
Y
1
B
GLY
449
B
GLY
149
1
Y
1
B
SER
450
B
SER
150
1
Y
1
B
GLU
451
B
GLU
151
1
Y
1
B
THR
452
B
THR
152
1
Y
1
B
ARG
501
B
ARG
201
1
Y
1
B
CYS
502
B
CYS
202
1
Y
1
B
GLY
503
B
GLY
203
1
Y
1
B
SER
504
B
SER
204
1
Y
1
B
THR
505
B
THR
205
1
Y
1
B
ALA
506
B
ALA
206
1
Y
1
B
VAL
507
B
VAL
207
1
Y
1
B
ASP
508
B
ASP
208
1
Y
1
B
ALA
509
B
ALA
209
1
Y
1
B
TYR
530
0.067
SIDE CHAIN
1
10.90
1.50
119.30
130.20
B
B
B
C
N
CA
GLY
PRO
PRO
410
411
411
Y
1
A
GLU
5
62.72
-73.74
1
A
GLN
7
-55.81
-7.66
1
A
VAL
11
-67.15
17.74
1
A
PRO
13
-49.56
152.15
1
A
ASP
24
-76.29
28.08
1
A
PRO
27
-41.40
161.72
1
A
LEU
34
-150.89
85.94
1
A
ALA
45
-82.25
-99.61
1
A
ALA
67
-140.04
53.12
1
A
VAL
78
-80.89
-145.32
1
A
THR
89
-133.56
-30.69
1
A
SER
90
-45.14
108.99
1
A
SER
113
12.90
-83.88
1
A
ARG
136
-108.54
-75.27
1
A
THR
153
66.54
87.75
1
A
VAL
163
-170.93
126.59
1
A
ALA
197
-80.24
31.75
1
A
GLN
198
-138.86
-48.62
1
A
ASP
212
-27.34
98.68
1
A
ARG
215
-144.57
-4.14
1
A
ARG
234
-51.38
-75.72
1
A
GLU
249
73.22
-2.79
1
A
GLU
251
-153.02
-0.42
1
B
GLU
305
71.14
-67.73
1
B
VAL
311
-81.63
35.64
1
B
ALA
321
179.05
144.12
1
B
ASP
328
-58.72
-0.86
1
B
ALA
330
-38.62
-92.90
1
B
GLU
331
36.16
-74.11
1
B
LEU
332
-52.76
-76.71
1
B
LEU
333
70.58
116.18
1
B
PRO
335
-12.26
125.45
1
B
ARG
336
-23.24
-85.54
1
B
ASP
337
-38.97
-29.14
1
B
VAL
338
-55.32
-86.60
1
B
ASN
362
35.48
47.68
1
B
ASP
365
-58.77
-2.09
1
B
SER
390
-34.74
105.09
1
B
SER
413
25.20
-97.15
1
B
ASP
418
-166.90
79.12
1
B
TYR
428
-114.13
56.36
1
B
SER
516
-76.48
-169.63
1
B
GLU
549
-74.40
27.43
1
B
SER
552
-149.07
-155.06
PROTEIN_REP.PARAM
PROTEIN.TOP
PARAM.HCMV
TOP.HCMV
62.0
14.93
0.00
0.00
22.98
0.00
-37.91
0.298
0.010
0.236
0.236
2.70
19.71
952
13926
13923
6.8
80.7
RANDOM
0.000000
2631533.36
2631533.36
1
RESTRAINED
THROUGHOUT
2.0
COMO
Engh & Huber
FLAT MODEL
26.1713
0.299306
0.45
0.37
5.00
0.65
0.53
2.70
19.71
0
3503
51
0
3452
0.008
1.4
23.1
0.99
1
CONSTR
1
X-RAY DIFFRACTION
0.404
0.038
0.361
2.87
115
1362
6
7.8
52.6
4.6
2.70
20.00
1NKM
16733
16733
0.0
1
96.7
2.70
2.80
1
92.2
refinement
CNS
1.0
data reduction
DENZO
data scaling
SCALEPACK
phasing
COMO
Complex structure of HCMV Protease and a peptidomimetic inhibitor
1
N
N
1
N
N
2
N
N
A
GLU
5
A
GLU
5
HELX_P
A
VAL
11
A
VAL
11
1
1
7
A
GLU
29
A
GLU
29
HELX_P
A
LEU
33
A
LEU
33
5
2
5
A
PRO
35
A
PRO
35
HELX_P
A
ALA
45
A
ALA
45
1
3
11
A
SER
90
A
SER
90
HELX_P
A
GLU
102
A
GLU
102
1
4
13
A
SER
104
A
SER
104
HELX_P
A
ARG
109
A
ARG
109
1
5
6
A
ASP
118
A
ASP
118
HELX_P
A
TYR
128
A
TYR
128
1
6
11
A
ASP
176
A
ASP
176
HELX_P
A
GLN
182
A
GLN
182
1
7
7
A
THR
188
A
THR
188
HELX_P
A
GLN
200
A
GLN
200
1
8
13
A
ASP
217
A
ASP
217
HELX_P
A
LEU
229
A
LEU
229
1
9
13
A
GLU
233
A
GLU
233
HELX_P
A
GLY
246
A
GLY
246
1
10
14
B
GLU
305
B
GLU
5
HELX_P
B
VAL
311
B
VAL
11
1
11
7
B
GLU
329
B
GLU
29
HELX_P
B
LEU
333
B
LEU
33
5
12
5
B
PRO
335
B
PRO
35
HELX_P
B
HIS
344
B
HIS
44
1
13
10
B
SER
390
B
SER
90
HELX_P
B
GLU
402
B
GLU
102
1
14
13
B
SER
404
B
SER
104
HELX_P
B
ARG
409
B
ARG
109
1
15
6
B
ASP
418
B
ASP
118
HELX_P
B
TYR
428
B
TYR
128
1
16
11
B
ASP
476
B
ASP
176
HELX_P
B
GLN
482
B
GLN
182
1
17
7
B
THR
488
B
THR
188
HELX_P
B
GLN
500
B
GLN
200
1
18
13
B
ASP
517
B
ASP
217
HELX_P
B
TYR
530
B
TYR
230
1
19
14
B
GLU
533
B
GLU
233
HELX_P
B
VAL
545
B
VAL
245
1
20
13
covale
1.443
none
A
SER
132
A
OG
SER
132
1_555
A
0FP
260
C
C4
0FP
1_555
HYDROLASE/HYDROLASE INHIBITOR
Protease, Peptidomimetic Inhibitor, Induced-fit, HYDROLASE-HYDROLASE INHIBITOR complex
VP40_HCMVA
UNP
1
1
P16753
MTMDEQQSQAVAPVYVGGFLARYDQSPDEAELLLPRDVVEHWLHAQGQGQPSLSVALPLNINHDDTAVVGHVAAMQSVRD
GLFCLGCVTSPRFLEIVRRASEKSELVSRGPVSPLQPDKVVEFLSGSYAGLSLSSRRCDDVEAATSLSGSETTPFKHVAL
CSVGRRRGTLAVYGRDPEWVTQRFPDLTAADRDGLRAQWQRCGSTAVDASGDPFRSDSYGLLGNSVDALYIRERLPKLRY
DKQLVGVTERESYVKA
1
256
1NKM
1
256
P16753
A
1
1
256
1
256
1NKM
301
556
P16753
B
1
1
256
1
ALA
engineered mutation
GLN
143
1NKM
A
P16753
UNP
143
143
2
ALA
engineered mutation
GLN
443
1NKM
B
P16753
UNP
143
143
7
7
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLY
130
A
GLY
130
A
SER
134
A
SER
134
A
HIS
157
A
HIS
157
A
CYS
161
A
CYS
161
A
PRO
58
A
PRO
58
A
ILE
61
A
ILE
61
A
ASP
64
A
ASP
64
A
SER
77
A
SER
77
A
LEU
82
A
LEU
82
A
VAL
88
A
VAL
88
A
VAL
14
A
VAL
14
A
ALA
21
A
ALA
21
A
VAL
172
A
VAL
172
A
GLY
174
A
GLY
174
B
GLY
430
B
GLY
130
B
SER
434
B
SER
134
B
HIS
457
B
HIS
157
B
CYS
461
B
CYS
161
B
PRO
358
B
PRO
58
B
ILE
361
B
ILE
61
B
VAL
368
B
VAL
68
B
SER
377
B
SER
77
B
GLY
381
B
GLY
81
B
VAL
388
B
VAL
88
B
VAL
314
B
VAL
14
B
ARG
322
B
ARG
22
B
VAL
472
B
VAL
172
B
GLY
474
B
GLY
174
BINDING SITE FOR RESIDUE 0FP A 260
A
0FP
260
Software
13
A
ASN
62
A
ASN
62
13
1_555
A
HIS
63
A
HIS
63
13
1_555
A
SER
132
A
SER
132
13
1_555
A
LEU
133
A
LEU
133
13
1_555
A
SER
134
A
SER
134
13
1_555
A
SER
135
A
SER
135
13
1_555
A
ARG
136
A
ARG
136
13
1_555
A
LYS
156
A
LYS
156
13
1_555
A
CYS
161
A
CYS
161
13
1_555
A
VAL
163
A
VAL
163
13
1_555
A
GLY
164
A
GLY
164
13
1_555
A
ARG
165
A
ARG
165
13
1_555
A
ILE
231
A
ILE
231
13
1_555
92
P 41 21 2