0.025711 0.000000 0.000000 0.000000 0.018791 0.000000 0.000000 0.000000 0.007754 0.00000 0.00000 0.00000 Huang, M. Huang, G. Furie, B. Seaton, B. Furie, B.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 38.894 53.217 128.959 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Ca 2 40.078 CALCIUM ION non-polymer C6 H9 N O6 191.139 n GAMMA-CARBOXY-GLUTAMIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C21 H44 N O9 P 485.549 n O-{HYDROXY[((2R)-2-HYDROXY-3-{[(1S)-1-HYDROXYPENTADECYL]OXY}PROPYL)OXY]PHOSPHORYL}-L-SERINE LYSOPHOSPHOTIDYLSERINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CA N 75 N N N 76 S C N 77 N C N 78 N O N 79 N O N 80 N C N 81 N C N 82 N C N 83 N C N 84 N O N 85 N O N 86 N O N 87 N O N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N CL N 98 N N N 99 R C N 100 N C N 101 N O N 102 N C N 103 N S N 104 N O N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N N N 113 S C N 114 N C N 115 N O N 116 N C N 117 N C N 118 N C N 119 N O N 120 N N N 121 N O N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N N N 133 S C N 134 N C N 135 N O N 136 N C N 137 N C N 138 N C N 139 N O N 140 N O N 141 N O N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N N N 152 N C N 153 N C N 154 N O N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 N C Y 166 N C Y 167 N N Y 168 N C Y 169 N C Y 170 N N N 171 N O N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N O N 183 N H N 184 N H N 185 N N N 186 S C N 187 N C N 188 N O N 189 S C N 190 N C N 191 N C N 192 N C N 193 N O N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N N N 208 S C N 209 N C N 210 N O N 211 N C N 212 N C N 213 N C N 214 N C N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N O N 230 N C N 231 N O N 232 S C N 233 N N N 234 N C N 235 N O N 236 R P N 237 N O N 238 N O N 239 N O N 240 N C N 241 R C N 242 N O N 243 N C N 244 N O N 245 R C N 246 N O N 247 N C N 248 N C N 249 N C N 250 N C N 251 N C N 252 N C N 253 N C N 254 N C N 255 N C N 256 N C N 257 N C N 258 N C N 259 N C N 260 N C N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 N C N 310 N C N 311 N C N 312 N C N 313 N N N 314 N O N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N N N 331 S C N 332 N C N 333 N O N 334 N C N 335 N C N 336 N S N 337 N C N 338 N O N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 R C N 351 R C N 352 R C N 353 S C N 354 R C N 355 N C N 356 N C N 357 N C N 358 N N N 359 N O N 360 N O N 361 N O N 362 N O N 363 N O N 364 N O N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N N N 381 S C N 382 N C N 383 N O N 384 N C Y 385 N C Y 386 N C Y 387 N C Y 388 N C Y 389 N C Y 390 N C N 391 N O N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N N N 404 S C N 405 N C N 406 N O N 407 N C N 408 N C N 409 N C N 410 N O N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N N N 421 S C N 422 N C N 423 N O N 424 N C N 425 N O N 426 N O N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N N N 435 S C N 436 N C N 437 N O N 438 R C N 439 N O N 440 N C N 441 N O N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N N N 452 S C N 453 N C N 454 N O N 455 N C Y 456 N C Y 457 N C Y 458 N C Y 459 N N Y 460 N C Y 461 N C Y 462 N C Y 463 N C Y 464 N C N 465 N O N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N N N 479 S C N 480 N C N 481 N O N 482 N C Y 483 N C Y 484 N C Y 485 N C Y 486 N C Y 487 N C Y 488 N C N 489 N O N 490 N O N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N N N 503 S C N 504 N C N 505 N O N 506 N C N 507 N C N 508 N C N 509 N O N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N H N 517 N H N 518 N H N 519 N H N 520 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N doub N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N doub N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N doub N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N doub N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing Y 161 N sing Y 162 N doub Y 163 N doub N 164 N sing Y 165 N sing N 166 N sing Y 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N doub N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N doub N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N doub N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N doub N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N doub N 370 N sing N 371 N sing N 372 N sing N 373 N sing Y 374 N doub Y 375 N sing Y 376 N sing N 377 N sing Y 378 N doub N 379 N sing Y 380 N doub N 381 N sing Y 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N doub N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N doub N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N doub N 439 N sing N 440 N sing N 441 N sing N 442 N sing Y 443 N doub Y 444 N sing Y 445 N sing N 446 N sing Y 447 N doub Y 448 N sing Y 449 N sing N 450 N sing Y 451 N sing Y 452 N doub N 453 N sing Y 454 N doub N 455 N sing Y 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N doub N 467 N sing N 468 N sing N 469 N sing N 470 N sing Y 471 N doub Y 472 N sing Y 473 N sing N 474 N sing Y 475 N doub N 476 N sing Y 477 N doub N 478 N sing Y 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N doub N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing US Nat.Struct.Biol. NSBIEW 2024 1072-8368 10 751 756 10.1038/nsb971 12923575 Structural basis of membrane binding by Gla domains of vitamin K-dependent proteins. 2003 10.2210/pdb1nl2/pdb pdb_00001nl2 LPS A 451 HAS WRONG CHIRALITY AT ATOM C31 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 110 1 IMAGE PLATE MAR scanner 345 mm plate SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE 16857.311 Prothrombin 3.4.21.5 FRAGMENT 1 (residues 1-156) 1 nat polymer 424.401 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 1 syn branched 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose 1 syn non-polymer 40.078 CALCIUM ION 7 syn non-polymer 35.453 CHLORIDE ION 3 syn non-polymer 485.549 O-{HYDROXY[((2R)-2-HYDROXY-3-{[(1S)-1-HYDROXYPENTADECYL]OXY}PROPYL)OXY]PHOSPHORYL}-L-SERINE 1 syn non-polymer 18.015 water 60 nat water no yes ANKGFL(CGU)(CGU)VRKGNL(CGU)R(CGU)CL(CGU)(CGU)PCSR(CGU)(CGU)AF(CGU)AL(CGU)SLSATDA FWAKYTACESARNPREKLNECLEGNCAEGVGMNYRGNVSVTRSGIECQLWRSRYPHKPEINSTTHPGADLRENFCRNPDG SITGPWCYTTSPTLRREECSVPVCGQ ANKGFLEEVRKGNLERECLEEPCSREEAFEALESLSATDAFWAKYTACESARNPREKLNECLEGNCAEGVGMNYRGNVSV TRSGIECQLWRSRYPHKPEINSTTHPGADLRENFCRNPDGSITGPWCYTTSPTLRREECSVPVCGQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n cattle Bos sample 9913 Bos taurus 1 3.96 68.91 7.6 pH 7.6 atom_site chem_comp database_PDB_caveat entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen pdbx_struct_conn_angle struct_asym struct_conn struct_ref_seq_dif struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model chem_comp_atom chem_comp_bond repository Initial release Carbohydrate remediation repository Remediation Version format compliance Non-polymer description Version format compliance Advisory Atomic model Data collection Database references Derived calculations Structure summary Data collection Database references Refinement description Structure summary Data collection 1 0 2003-09-16 1 1 2008-04-29 1 2 2011-07-13 2 0 2020-07-29 2 1 2023-08-16 2 2 2023-11-15 _atom_site.auth_asym_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_entity_id _chem_comp.name _chem_comp.type _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _chem_comp_atom.atom_id _chem_comp_bond.atom_id_2 C NAG 301 n B NAG 1 C NAG 302 n B NAG 2 DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc RCSB Y RCSB 2003-01-06 REL oligosaccharide DGlcpNAcb1-4DGlcpNAcb1- 2 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1 2 PDB2Glycan 1.1.0 WURCS []{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}} 2 PDB-CARE LINUCS C1 O4 NAG NAG 2 1 2 O1 HO4 sing n n NAG 2-acetamido-2-deoxy-beta-D-glucopyranose CA CALCIUM ION CL CHLORIDE ION LPS O-{HYDROXY[((2R)-2-HYDROXY-3-{[(1S)-1-HYDROXYPENTADECYL]OXY}PROPYL)OXY]PHOSPHORYL}-L-SERINE HOH water 1NL1 PDB experimental model NAG 303 3 NAG NAG 303 A CA 201 4 CA CA 201 A CA 202 4 CA CA 202 A CA 203 4 CA CA 203 A CA 204 4 CA CA 204 A CA 205 4 CA CA 205 A CA 206 4 CA CA 206 A CA 207 4 CA CA 207 A CL 250 5 CL CL 250 A CL 251 5 CL CL 251 A CL 252 5 CL CL 252 A LPS 451 6 LPS LPS 451 A HOH 501 7 HOH HOH 501 A HOH 502 7 HOH HOH 502 A HOH 503 7 HOH HOH 503 A HOH 504 7 HOH HOH 504 A HOH 505 7 HOH HOH 505 A HOH 506 7 HOH HOH 506 A HOH 507 7 HOH HOH 507 A HOH 508 7 HOH HOH 508 A HOH 509 7 HOH HOH 509 A HOH 510 7 HOH HOH 510 A HOH 511 7 HOH HOH 511 A HOH 512 7 HOH HOH 512 A HOH 513 7 HOH HOH 513 A HOH 514 7 HOH HOH 514 A HOH 515 7 HOH HOH 515 A HOH 516 7 HOH HOH 516 A HOH 517 7 HOH HOH 517 A HOH 518 7 HOH HOH 518 A HOH 519 7 HOH HOH 519 A HOH 520 7 HOH HOH 520 A HOH 521 7 HOH HOH 521 A HOH 522 7 HOH HOH 522 A HOH 523 7 HOH HOH 523 A HOH 524 7 HOH HOH 524 A HOH 525 7 HOH HOH 525 A HOH 526 7 HOH HOH 526 A HOH 527 7 HOH HOH 527 A HOH 528 7 HOH HOH 528 A HOH 529 7 HOH HOH 529 A HOH 530 7 HOH HOH 530 A HOH 531 7 HOH HOH 531 A HOH 532 7 HOH HOH 532 A HOH 533 7 HOH HOH 533 A HOH 534 7 HOH HOH 534 A HOH 535 7 HOH HOH 535 A HOH 536 7 HOH HOH 536 A HOH 537 7 HOH HOH 537 A HOH 538 7 HOH HOH 538 A HOH 539 7 HOH HOH 539 A HOH 540 7 HOH HOH 540 A HOH 541 7 HOH HOH 541 A HOH 542 7 HOH HOH 542 A HOH 543 7 HOH HOH 543 A HOH 544 7 HOH HOH 544 A HOH 545 7 HOH HOH 545 A HOH 546 7 HOH HOH 546 A HOH 547 7 HOH HOH 547 A HOH 548 7 HOH HOH 548 A HOH 549 7 HOH HOH 549 A HOH 550 7 HOH HOH 550 A HOH 551 7 HOH HOH 551 A HOH 552 7 HOH HOH 552 A HOH 553 7 HOH HOH 553 A HOH 554 7 HOH HOH 554 A HOH 555 7 HOH HOH 555 A HOH 556 7 HOH HOH 556 A HOH 557 7 HOH HOH 557 A HOH 558 7 HOH HOH 558 A HOH 559 7 HOH HOH 559 A HOH 560 7 HOH HOH 560 A ALA 1 n 1 ALA 1 A ASN 2 n 2 ASN 2 A LYS 3 n 3 LYS 3 A GLY 4 n 4 GLY 4 A PHE 5 n 5 PHE 5 A LEU 6 n 6 LEU 6 A CGU 7 n 7 CGU 7 A CGU 8 n 8 CGU 8 A VAL 9 n 9 VAL 9 A ARG 10 n 10 ARG 10 A LYS 11 n 11 LYS 11 A GLY 12 n 12 GLY 12 A ASN 13 n 13 ASN 13 A LEU 14 n 14 LEU 14 A CGU 15 n 15 CGU 15 A ARG 16 n 16 ARG 16 A CGU 17 n 17 CGU 17 A CYS 18 n 18 CYS 18 A LEU 19 n 19 LEU 19 A CGU 20 n 20 CGU 20 A CGU 21 n 21 CGU 21 A PRO 22 n 22 PRO 22 A CYS 23 n 23 CYS 23 A SER 24 n 24 SER 24 A ARG 25 n 25 ARG 25 A CGU 26 n 26 CGU 26 A CGU 27 n 27 CGU 27 A ALA 28 n 28 ALA 28 A PHE 29 n 29 PHE 29 A CGU 30 n 30 CGU 30 A ALA 31 n 31 ALA 31 A LEU 32 n 32 LEU 32 A CGU 33 n 33 CGU 33 A SER 34 n 34 SER 34 A LEU 35 n 35 LEU 35 A SER 36 n 36 SER 36 A ALA 37 n 37 ALA 37 A THR 38 n 38 THR 38 A ASP 39 n 39 ASP 39 A ALA 40 n 40 ALA 40 A PHE 41 n 41 PHE 41 A TRP 42 n 42 TRP 42 A ALA 43 n 43 ALA 43 A LYS 44 n 44 LYS 44 A TYR 45 n 45 TYR 45 A THR 46 n 46 THR 46 A ALA 47 n 47 ALA 47 A CYS 48 n 48 CYS 48 A GLU 49 n 49 GLU 49 A SER 50 n 50 SER 50 A ALA 51 n 51 ALA 51 A ARG 52 n 52 ARG 52 A ASN 53 n 53 ASN 53 A PRO 54 n 54 PRO 54 A ARG 55 n 55 ARG 55 A GLU 56 n 56 GLU 56 A LYS 57 n 57 LYS 57 A LEU 58 n 58 LEU 58 A ASN 59 n 59 ASN 59 A GLU 60 n 60 GLU 60 A CYS 61 n 61 CYS 61 A LEU 62 n 62 LEU 62 A GLU 63 n 63 GLU 63 A GLY 64 n 64 GLY 64 A ASN 65 n 65 ASN 65 A CYS 66 n 66 CYS 66 A ALA 67 n 67 ALA 67 A GLU 68 n 68 GLU 68 A GLY 69 n 69 GLY 69 A VAL 70 n 70 VAL 70 A GLY 71 n 71 GLY 71 A MET 72 n 72 MET 72 A ASN 73 n 73 ASN 73 A TYR 74 n 74 TYR 74 A ARG 75 n 75 ARG 75 A GLY 76 n 76 GLY 76 A ASN 77 n 77 ASN 77 A VAL 78 n 78 VAL 78 A SER 79 n 79 SER 79 A VAL 80 n 80 VAL 80 A THR 81 n 81 THR 81 A ARG 82 n 82 ARG 82 A SER 83 n 83 SER 83 A GLY 84 n 84 GLY 84 A ILE 85 n 85 ILE 85 A GLU 86 n 86 GLU 86 A CYS 87 n 87 CYS 87 A GLN 88 n 88 GLN 88 A LEU 89 n 89 LEU 89 A TRP 90 n 90 TRP 90 A ARG 91 n 91 ARG 91 A SER 92 n 92 SER 92 A ARG 93 n 93 ARG 93 A TYR 94 n 94 TYR 94 A PRO 95 n 95 PRO 95 A HIS 96 n 96 HIS 96 A LYS 97 n 97 LYS 97 A PRO 98 n 98 PRO 98 A GLU 99 n 99 GLU 99 A ILE 100 n 100 ILE 100 A ASN 101 n 101 ASN 101 A SER 102 n 102 SER 102 A THR 103 n 103 THR 103 A THR 104 n 104 THR 104 A HIS 105 n 105 HIS 105 A PRO 106 n 106 PRO 106 A GLY 107 n 107 GLY 107 A ALA 108 n 108 ALA 108 A ASP 109 n 109 ASP 109 A LEU 110 n 110 LEU 110 A ARG 111 n 111 ARG 111 A GLU 112 n 112 GLU 112 A ASN 113 n 113 ASN 113 A PHE 114 n 114 PHE 114 A CYS 115 n 115 CYS 115 A ARG 116 n 116 ARG 116 A ASN 117 n 117 ASN 117 A PRO 118 n 118 PRO 118 A ASP 119 n 119 ASP 119 A GLY 120 n 120 GLY 120 A SER 121 n 121 SER 121 A ILE 122 n 122 ILE 122 A THR 123 n 123 THR 123 A GLY 124 n 124 GLY 124 A PRO 125 n 125 PRO 125 A TRP 126 n 126 TRP 126 A CYS 127 n 127 CYS 127 A TYR 128 n 128 TYR 128 A THR 129 n 129 THR 129 A THR 130 n 130 THR 130 A SER 131 n 131 SER 131 A PRO 132 n 132 PRO 132 A THR 133 n 133 THR 133 A LEU 134 n 134 LEU 134 A ARG 135 n 135 ARG 135 A ARG 136 n 136 ARG 136 A GLU 137 n 137 GLU 137 A GLU 138 n 138 GLU 138 A CYS 139 n 139 CYS 139 A SER 140 n 140 SER 140 A VAL 141 n 141 VAL 141 A PRO 142 n 142 PRO 142 A VAL 143 n 143 VAL 143 A CYS 144 n 144 CYS 144 A GLY 145 n 145 GLY 145 A GLN 146 n 146 GLN 146 A author_defined_assembly 1 monomeric A ALA 1 A O ALA 1 1_555 A CA 205 H CA CA 1_555 A CGU 7 A OE11 CGU 7 1_555 80.5 A ALA 1 A O ALA 1 1_555 A CA 205 H CA CA 1_555 A CGU 7 A OE12 CGU 7 1_555 64.0 A CGU 7 A OE11 CGU 7 1_555 A CA 205 H CA CA 1_555 A CGU 7 A OE12 CGU 7 1_555 53.0 A ALA 1 A O ALA 1 1_555 A CA 205 H CA CA 1_555 A CGU 17 A OE21 CGU 17 1_555 66.2 A CGU 7 A OE11 CGU 7 1_555 A CA 205 H CA CA 1_555 A CGU 17 A OE21 CGU 17 1_555 71.6 A CGU 7 A OE12 CGU 7 1_555 A CA 205 H CA CA 1_555 A CGU 17 A OE21 CGU 17 1_555 108.7 A ALA 1 A O ALA 1 1_555 A CA 205 H CA CA 1_555 A CGU 17 A OE22 CGU 17 1_555 120.8 A CGU 7 A OE11 CGU 7 1_555 A CA 205 H CA CA 1_555 A CGU 17 A OE22 CGU 17 1_555 78.8 A CGU 7 A OE12 CGU 7 1_555 A CA 205 H CA CA 1_555 A CGU 17 A OE22 CGU 17 1_555 131.1 A CGU 17 A OE21 CGU 17 1_555 A CA 205 H CA CA 1_555 A CGU 17 A OE22 CGU 17 1_555 54.7 A ALA 1 A O ALA 1 1_555 A CA 205 H CA CA 1_555 A CGU 21 A OE11 CGU 21 1_555 78.0 A CGU 7 A OE11 CGU 7 1_555 A CA 205 H CA CA 1_555 A CGU 21 A OE11 CGU 21 1_555 146.8 A CGU 7 A OE12 CGU 7 1_555 A CA 205 H CA CA 1_555 A CGU 21 A OE11 CGU 21 1_555 133.3 A CGU 17 A OE21 CGU 17 1_555 A CA 205 H CA CA 1_555 A CGU 21 A OE11 CGU 21 1_555 76.6 A CGU 17 A OE22 CGU 17 1_555 A CA 205 H CA CA 1_555 A CGU 21 A OE11 CGU 21 1_555 90.8 A ALA 1 A O ALA 1 1_555 A CA 205 H CA CA 1_555 A HOH 527 O O HOH 1_555 78.1 A CGU 7 A OE11 CGU 7 1_555 A CA 205 H CA CA 1_555 A HOH 527 O O HOH 1_555 122.4 A CGU 7 A OE12 CGU 7 1_555 A CA 205 H CA CA 1_555 A HOH 527 O O HOH 1_555 69.6 A CGU 17 A OE21 CGU 17 1_555 A CA 205 H CA CA 1_555 A HOH 527 O O HOH 1_555 139.2 A CGU 17 A OE22 CGU 17 1_555 A CA 205 H CA CA 1_555 A HOH 527 O O HOH 1_555 155.4 A CGU 21 A OE11 CGU 21 1_555 A CA 205 H CA CA 1_555 A HOH 527 O O HOH 1_555 77.2 A ASN 2 A OD1 ASN 2 1_555 A CA 204 G CA CA 1_555 A CGU 7 A OE11 CGU 7 1_555 91.5 A ASN 2 A OD1 ASN 2 1_555 A CA 204 G CA CA 1_555 A CGU 8 A OE22 CGU 8 1_555 65.3 A CGU 7 A OE11 CGU 7 1_555 A CA 204 G CA CA 1_555 A CGU 8 A OE22 CGU 8 1_555 81.0 A ASN 2 A OD1 ASN 2 1_555 A CA 204 G CA CA 1_555 A CGU 17 A OE21 CGU 17 1_555 129.4 A CGU 7 A OE11 CGU 7 1_555 A CA 204 G CA CA 1_555 A CGU 17 A OE21 CGU 17 1_555 67.7 A CGU 8 A OE22 CGU 8 1_555 A CA 204 G CA CA 1_555 A CGU 17 A OE21 CGU 17 1_555 144.4 A ASN 2 A OD1 ASN 2 1_555 A CA 204 G CA CA 1_555 A CGU 17 A OE11 CGU 17 1_555 143.8 A CGU 7 A OE11 CGU 7 1_555 A CA 204 G CA CA 1_555 A CGU 17 A OE11 CGU 17 1_555 94.1 A CGU 8 A OE22 CGU 8 1_555 A CA 204 G CA CA 1_555 A CGU 17 A OE11 CGU 17 1_555 80.4 A CGU 17 A OE21 CGU 17 1_555 A CA 204 G CA CA 1_555 A CGU 17 A OE11 CGU 17 1_555 85.3 A ASN 2 A OD1 ASN 2 1_555 A CA 204 G CA CA 1_555 A CGU 27 A OE22 CGU 27 1_555 86.5 A CGU 7 A OE11 CGU 7 1_555 A CA 204 G CA CA 1_555 A CGU 27 A OE22 CGU 27 1_555 128.3 A CGU 8 A OE22 CGU 8 1_555 A CA 204 G CA CA 1_555 A CGU 27 A OE22 CGU 27 1_555 141.0 A CGU 17 A OE21 CGU 17 1_555 A CA 204 G CA CA 1_555 A CGU 27 A OE22 CGU 27 1_555 74.3 A CGU 17 A OE11 CGU 17 1_555 A CA 204 G CA CA 1_555 A CGU 27 A OE22 CGU 27 1_555 116.6 A ASN 2 A OD1 ASN 2 1_555 A CA 204 G CA CA 1_555 A CGU 27 A OE11 CGU 27 1_555 87.5 A CGU 7 A OE11 CGU 7 1_555 A CA 204 G CA CA 1_555 A CGU 27 A OE11 CGU 27 1_555 149.1 A CGU 8 A OE22 CGU 8 1_555 A CA 204 G CA CA 1_555 A CGU 27 A OE11 CGU 27 1_555 70.6 A CGU 17 A OE21 CGU 17 1_555 A CA 204 G CA CA 1_555 A CGU 27 A OE11 CGU 27 1_555 133.5 A CGU 17 A OE11 CGU 17 1_555 A CA 204 G CA CA 1_555 A CGU 27 A OE11 CGU 27 1_555 69.9 A CGU 27 A OE22 CGU 27 1_555 A CA 204 G CA CA 1_555 A CGU 27 A OE11 CGU 27 1_555 82.4 A CGU 8 A OE12 CGU 8 1_555 A CA 202 E CA CA 1_555 A CGU 8 A OE21 CGU 8 1_555 86.8 A CGU 8 A OE12 CGU 8 1_555 A CA 202 E CA CA 1_555 A CGU 27 A OE12 CGU 27 1_555 104.6 A CGU 8 A OE21 CGU 8 1_555 A CA 202 E CA CA 1_555 A CGU 27 A OE12 CGU 27 1_555 96.7 A CGU 8 A OE12 CGU 8 1_555 A CA 202 E CA CA 1_555 A CGU 30 A OE21 CGU 30 1_555 155.2 A CGU 8 A OE21 CGU 8 1_555 A CA 202 E CA CA 1_555 A CGU 30 A OE21 CGU 30 1_555 68.4 A CGU 27 A OE12 CGU 27 1_555 A CA 202 E CA CA 1_555 A CGU 30 A OE21 CGU 30 1_555 78.2 A CGU 8 A OE12 CGU 8 1_555 A CA 202 E CA CA 1_555 A CGU 30 A OE22 CGU 30 1_555 150.5 A CGU 8 A OE21 CGU 8 1_555 A CA 202 E CA CA 1_555 A CGU 30 A OE22 CGU 30 1_555 112.7 A CGU 27 A OE12 CGU 27 1_555 A CA 202 E CA CA 1_555 A CGU 30 A OE22 CGU 30 1_555 95.1 A CGU 30 A OE21 CGU 30 1_555 A CA 202 E CA CA 1_555 A CGU 30 A OE22 CGU 30 1_555 50.1 A CGU 8 A OE12 CGU 8 1_555 A CA 202 E CA CA 1_555 A HOH 504 O O HOH 1_555 83.4 A CGU 8 A OE21 CGU 8 1_555 A CA 202 E CA CA 1_555 A HOH 504 O O HOH 1_555 169.5 A CGU 27 A OE12 CGU 27 1_555 A CA 202 E CA CA 1_555 A HOH 504 O O HOH 1_555 82.2 A CGU 30 A OE21 CGU 30 1_555 A CA 202 E CA CA 1_555 A HOH 504 O O HOH 1_555 121.2 A CGU 30 A OE22 CGU 30 1_555 A CA 202 E CA CA 1_555 A HOH 504 O O HOH 1_555 77.8 A CGU 8 A OE12 CGU 8 1_555 A CA 202 E CA CA 1_555 A HOH 507 O O HOH 1_555 91.1 A CGU 8 A OE21 CGU 8 1_555 A CA 202 E CA CA 1_555 A HOH 507 O O HOH 1_555 82.4 A CGU 27 A OE12 CGU 27 1_555 A CA 202 E CA CA 1_555 A HOH 507 O O HOH 1_555 164.2 A CGU 30 A OE21 CGU 30 1_555 A CA 202 E CA CA 1_555 A HOH 507 O O HOH 1_555 86.9 A CGU 30 A OE22 CGU 30 1_555 A CA 202 E CA CA 1_555 A HOH 507 O O HOH 1_555 71.0 A HOH 504 O O HOH 1_555 A CA 202 E CA CA 1_555 A HOH 507 O O HOH 1_555 101.6 A CGU 8 A OE21 CGU 8 1_555 A CA 203 F CA CA 1_555 A CGU 8 A OE22 CGU 8 1_555 47.7 A CGU 8 A OE21 CGU 8 1_555 A CA 203 F CA CA 1_555 A CGU 17 A OE11 CGU 17 1_555 115.1 A CGU 8 A OE22 CGU 8 1_555 A CA 203 F CA CA 1_555 A CGU 17 A OE11 CGU 17 1_555 69.6 A CGU 8 A OE21 CGU 8 1_555 A CA 203 F CA CA 1_555 A CGU 27 A OE11 CGU 27 1_555 86.5 A CGU 8 A OE22 CGU 8 1_555 A CA 203 F CA CA 1_555 A CGU 27 A OE11 CGU 27 1_555 65.0 A CGU 17 A OE11 CGU 17 1_555 A CA 203 F CA CA 1_555 A CGU 27 A OE11 CGU 27 1_555 80.4 A CGU 8 A OE21 CGU 8 1_555 A CA 203 F CA CA 1_555 A CGU 30 A OE21 CGU 30 1_555 72.7 A CGU 8 A OE22 CGU 8 1_555 A CA 203 F CA CA 1_555 A CGU 30 A OE21 CGU 30 1_555 108.5 A CGU 17 A OE11 CGU 17 1_555 A CA 203 F CA CA 1_555 A CGU 30 A OE21 CGU 30 1_555 156.4 A CGU 27 A OE11 CGU 27 1_555 A CA 203 F CA CA 1_555 A CGU 30 A OE21 CGU 30 1_555 77.8 A CGU 8 A OE21 CGU 8 1_555 A CA 203 F CA CA 1_555 A HOH 514 O O HOH 1_555 76.4 A CGU 8 A OE22 CGU 8 1_555 A CA 203 F CA CA 1_555 A HOH 514 O O HOH 1_555 117.2 A CGU 17 A OE11 CGU 17 1_555 A CA 203 F CA CA 1_555 A HOH 514 O O HOH 1_555 131.7 A CGU 27 A OE11 CGU 27 1_555 A CA 203 F CA CA 1_555 A HOH 514 O O HOH 1_555 147.6 A CGU 30 A OE21 CGU 30 1_555 A CA 203 F CA CA 1_555 A HOH 514 O O HOH 1_555 70.9 A CGU 8 A OE21 CGU 8 1_555 A CA 203 F CA CA 1_555 A HOH 519 O O HOH 1_555 93.4 A CGU 8 A OE22 CGU 8 1_555 A CA 203 F CA CA 1_555 A HOH 519 O O HOH 1_555 86.1 A CGU 17 A OE11 CGU 17 1_555 A CA 203 F CA CA 1_555 A HOH 519 O O HOH 1_555 63.9 A CGU 27 A OE11 CGU 27 1_555 A CA 203 F CA CA 1_555 A HOH 519 O O HOH 1_555 140.5 A CGU 30 A OE21 CGU 30 1_555 A CA 203 F CA CA 1_555 A HOH 519 O O HOH 1_555 139.5 A HOH 514 O O HOH 1_555 A CA 203 F CA CA 1_555 A HOH 519 O O HOH 1_555 68.9 A CGU 8 A OE21 CGU 8 1_555 A CA 203 F CA CA 1_555 A HOH 522 O O HOH 1_555 161.9 A CGU 8 A OE22 CGU 8 1_555 A CA 203 F CA CA 1_555 A HOH 522 O O HOH 1_555 148.0 A CGU 17 A OE11 CGU 17 1_555 A CA 203 F CA CA 1_555 A HOH 522 O O HOH 1_555 83.0 A CGU 27 A OE11 CGU 27 1_555 A CA 203 F CA CA 1_555 A HOH 522 O O HOH 1_555 95.1 A CGU 30 A OE21 CGU 30 1_555 A CA 203 F CA CA 1_555 A HOH 522 O O HOH 1_555 90.0 A HOH 514 O O HOH 1_555 A CA 203 F CA CA 1_555 A HOH 522 O O HOH 1_555 93.2 A HOH 519 O O HOH 1_555 A CA 203 F CA CA 1_555 A HOH 522 O O HOH 1_555 96.7 A CGU 15 A OE21 CGU 15 1_555 A CA 207 J CA CA 1_555 A CGU 15 A OE12 CGU 15 1_555 86.1 A CGU 15 A OE21 CGU 15 1_555 A CA 207 J CA CA 1_555 A CGU 20 A OE21 CGU 20 1_555 158.1 A CGU 15 A OE12 CGU 15 1_555 A CA 207 J CA CA 1_555 A CGU 20 A OE21 CGU 20 1_555 78.6 A CGU 15 A OE21 CGU 15 1_555 A CA 207 J CA CA 1_555 A CGU 20 A OE11 CGU 20 1_555 85.1 A CGU 15 A OE12 CGU 15 1_555 A CA 207 J CA CA 1_555 A CGU 20 A OE11 CGU 20 1_555 93.5 A CGU 20 A OE21 CGU 20 1_555 A CA 207 J CA CA 1_555 A CGU 20 A OE11 CGU 20 1_555 80.5 A CGU 15 A OE21 CGU 15 1_555 A CA 207 J CA CA 1_555 A HOH 537 O O HOH 1_555 109.8 A CGU 15 A OE12 CGU 15 1_555 A CA 207 J CA CA 1_555 A HOH 537 O O HOH 1_555 88.3 A CGU 20 A OE21 CGU 20 1_555 A CA 207 J CA CA 1_555 A HOH 537 O O HOH 1_555 85.4 A CGU 20 A OE11 CGU 20 1_555 A CA 207 J CA CA 1_555 A HOH 537 O O HOH 1_555 165.1 A CGU 21 A OE12 CGU 21 1_555 A CA 206 I CA CA 1_555 A CGU 21 A OE22 CGU 21 1_555 77.8 A CGU 21 A OE12 CGU 21 1_555 A CA 206 I CA CA 1_555 A LPS 451 N OT1 LPS 1_555 92.1 A CGU 21 A OE22 CGU 21 1_555 A CA 206 I CA CA 1_555 A LPS 451 N OT1 LPS 1_555 168.5 A CGU 21 A OE12 CGU 21 1_555 A CA 206 I CA CA 1_555 A HOH 557 O O HOH 1_555 150.8 A CGU 21 A OE22 CGU 21 1_555 A CA 206 I CA CA 1_555 A HOH 557 O O HOH 1_555 129.7 A LPS 451 N OT1 LPS 1_555 A CA 206 I CA CA 1_555 A HOH 557 O O HOH 1_555 61.3 A CGU 26 A OE12 CGU 26 1_555 A CA 201 D CA CA 1_555 A CGU 26 A OE21 CGU 26 1_555 75.5 A CGU 26 A OE12 CGU 26 1_555 A CA 201 D CA CA 1_555 A CGU 30 A OE11 CGU 30 1_555 88.2 A CGU 26 A OE21 CGU 26 1_555 A CA 201 D CA CA 1_555 A CGU 30 A OE11 CGU 30 1_555 148.5 A CGU 26 A OE12 CGU 26 1_555 A CA 201 D CA CA 1_555 A CGU 30 A OE22 CGU 30 1_555 81.1 A CGU 26 A OE21 CGU 26 1_555 A CA 201 D CA CA 1_555 A CGU 30 A OE22 CGU 30 1_555 71.8 A CGU 30 A OE11 CGU 30 1_555 A CA 201 D CA CA 1_555 A CGU 30 A OE22 CGU 30 1_555 79.3 A ASN 77 GLYCOSYLATION SITE A ASN 77 ASN A ASN 101 GLYCOSYLATION SITE A ASN 101 ASN A CGU 7 GAMMA-CARBOXY-GLUTAMIC ACID A CGU 7 GLU A CGU 8 GAMMA-CARBOXY-GLUTAMIC ACID A CGU 8 GLU A CGU 15 GAMMA-CARBOXY-GLUTAMIC ACID A CGU 15 GLU A CGU 17 GAMMA-CARBOXY-GLUTAMIC ACID A CGU 17 GLU A CGU 20 GAMMA-CARBOXY-GLUTAMIC ACID A CGU 20 GLU A CGU 21 GAMMA-CARBOXY-GLUTAMIC ACID A CGU 21 GLU A CGU 26 GAMMA-CARBOXY-GLUTAMIC ACID A CGU 26 GLU A CGU 27 GAMMA-CARBOXY-GLUTAMIC ACID A CGU 27 GLU A CGU 30 GAMMA-CARBOXY-GLUTAMIC ACID A CGU 30 GLU A CGU 33 GAMMA-CARBOXY-GLUTAMIC ACID A CGU 33 GLU 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N CYS 127 A N CYS 127 A O GLU 137 A O GLU 137 1 A C31 LPS 451 PLANAR 1 A A CG C8 ASN NAG 101 303 1.66 1 A A OD1 C8 ASN NAG 101 303 1.68 1 A A CB C8 ASN NAG 101 303 2.16 1 A A OE1 O GLU HOH 56 541 1.01 B 1_555 4_567 1 A A ND2 O ASN HOH 2 558 1.51 1_555 4_467 1 A A NE O ARG VAL 93 141 1.63 1_555 3_656 1 A A O O HOH HOH 502 541 1.71 1_555 4_567 1 A A CB CL GLN CL 146 251 1.92 1_555 3_646 1 A A ND2 O ASN HOH 2 509 1.93 1_555 4_467 1 A A CA O PRO HOH 95 549 1.97 1_555 3_656 1 A A CD O ARG VAL 93 141 1.98 1_555 3_656 1 A A CE O LYS GLN 97 146 1.98 1_555 3_656 1 A A CB O PRO HOH 95 549 2.01 1_555 3_656 1 A A NZ O LYS GLN 97 146 2.05 1_555 3_656 1 A A OE12 O CGU HOH 27 509 2.05 1_555 4_467 1 A A O CG2 ARG VAL 93 143 2.08 1_555 3_656 1 A A O CB GLY TYR 69 94 2.13 1_555 3_646 1 A A OH CB TYR VAL 94 141 2.14 1_555 3_656 1 A A CD O GLU HOH 56 541 2.19 B 1_555 4_567 1 A PHE 5 -52.73 -123.60 1 A ALA 51 -142.33 35.12 1 A GLU 112 43.80 -125.10 PROTEIN_REP.PARAM PROTEIN.TOP PT.PAR CARBOHYDRATE.PARAM WATER_REP.PARAM ION.PARAM 46.1 9.58 0.00 0.00 -0.71 0.00 -8.87 0.274 0.010 0.236 0.236 2.30 40.98 793 11181 7.1 89.5 RANDOM 1 RESTRAINED THROUGHOUT 0.0 MOLECULAR REPLACEMENT 1NL1 Engh & Huber FLAT MODEL 42.0849 0.354745 0.40 0.31 5.00 0.30 0.25 2.30 40.98 60 1319 84 0 1175 0.006 1.9 23.2 1.77 5.34 1.50 6.43 2.00 7.68 2.00 9.00 2.50 0.312 0.027 0.281 2.44 129 1622 6 7.4 86.0 38.5 2.3 50 1NL2 11566 -3 0.085 1 15.8 9.7 92.2 0.314 2.30 2.38 2.8 1 93.4 refinement CNS 1.1 data reduction DENZO data scaling SCALEPACK phasing AMoRE BOVINE PROTHROMBIN FRAGMENT 1 IN COMPLEX WITH CALCIUM AND LYSOPHOSPHOTIDYLSERINE 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 5 N N 5 N N 5 N N 6 N N 7 N N A LEU 6 A LEU 6 HELX_P A ARG 10 A ARG 10 5 1 5 A ASN 13 A ASN 13 HELX_P A CYS 18 A CYS 18 1 2 6 A SER 24 A SER 24 HELX_P A LEU 32 A LEU 32 1 3 9 A SER 34 A SER 34 HELX_P A ALA 47 A ALA 47 1 4 14 A CYS 48 A CYS 48 HELX_P A ARG 52 A ARG 52 5 5 5 A PRO 54 A PRO 54 HELX_P A GLY 64 A GLY 64 1 6 11 disulf 2.031 A CYS 18 A SG CYS 18 1_555 A CYS 23 A SG CYS 23 1_555 disulf 2.029 A CYS 48 A SG CYS 48 1_555 A CYS 61 A SG CYS 61 1_555 disulf 2.029 A CYS 66 A SG CYS 66 1_555 A CYS 144 A SG CYS 144 1_555 disulf 2.028 A CYS 87 A SG CYS 87 1_555 A CYS 127 A SG CYS 127 1_555 disulf 2.031 A CYS 115 A SG CYS 115 1_555 A CYS 139 A SG CYS 139 1_555 covale 1.327 both A LEU 6 A C LEU 6 1_555 A CGU 7 A N CGU 7 1_555 covale 1.328 both A CGU 7 A C CGU 7 1_555 A CGU 8 A N CGU 8 1_555 covale 1.330 both A CGU 8 A C CGU 8 1_555 A VAL 9 A N VAL 9 1_555 covale 1.327 both A LEU 14 A C LEU 14 1_555 A CGU 15 A N CGU 15 1_555 covale 1.329 both A CGU 15 A C CGU 15 1_555 A ARG 16 A N ARG 16 1_555 covale 1.328 both A ARG 16 A C ARG 16 1_555 A CGU 17 A N CGU 17 1_555 covale 1.332 both A CGU 17 A C CGU 17 1_555 A CYS 18 A N CYS 18 1_555 covale 1.330 both A LEU 19 A C LEU 19 1_555 A CGU 20 A N CGU 20 1_555 covale 1.330 both A CGU 20 A C CGU 20 1_555 A CGU 21 A N CGU 21 1_555 covale 1.340 both A CGU 21 A C CGU 21 1_555 A PRO 22 A N PRO 22 1_555 covale 1.331 both A ARG 25 A C ARG 25 1_555 A CGU 26 A N CGU 26 1_555 covale 1.331 both A CGU 26 A C CGU 26 1_555 A CGU 27 A N CGU 27 1_555 covale 1.331 both A CGU 27 A C CGU 27 1_555 A ALA 28 A N ALA 28 1_555 covale 1.331 both A PHE 29 A C PHE 29 1_555 A CGU 30 A N CGU 30 1_555 covale 1.332 both A CGU 30 A C CGU 30 1_555 A ALA 31 A N ALA 31 1_555 covale 1.331 both A LEU 32 A C LEU 32 1_555 A CGU 33 A N CGU 33 1_555 covale 1.332 both A CGU 33 A C CGU 33 1_555 A SER 34 A N SER 34 1_555 covale 1.458 one N-Glycosylation A ASN 77 A ND2 ASN 77 1_555 B NAG 1 B C1 NAG 1_555 covale 1.476 one N-Glycosylation A ASN 101 A ND2 ASN 101 1_555 A NAG 303 C C1 NAG 1_555 covale 1.379 both B NAG 1 B O4 NAG 1_555 B NAG 2 B C1 NAG 1_555 metalc 2.347 A ALA 1 A O ALA 1 1_555 A CA 205 H CA CA 1_555 metalc 2.414 A ASN 2 A OD1 ASN 2 1_555 A CA 204 G CA CA 1_555 metalc 2.611 A CGU 7 A OE11 CGU 7 1_555 A CA 204 G CA CA 1_555 metalc 2.485 A CGU 7 A OE11 CGU 7 1_555 A CA 205 H CA CA 1_555 metalc 2.463 A CGU 7 A OE12 CGU 7 1_555 A CA 205 H CA CA 1_555 metalc 2.453 A CGU 8 A OE12 CGU 8 1_555 A CA 202 E CA CA 1_555 metalc 2.577 A CGU 8 A OE21 CGU 8 1_555 A CA 202 E CA CA 1_555 metalc 2.268 A CGU 8 A OE21 CGU 8 1_555 A CA 203 F CA CA 1_555 metalc 2.952 A CGU 8 A OE22 CGU 8 1_555 A CA 203 F CA CA 1_555 metalc 2.258 A CGU 8 A OE22 CGU 8 1_555 A CA 204 G CA CA 1_555 metalc 2.050 A CGU 15 A OE21 CGU 15 1_555 A CA 207 J CA CA 1_555 metalc 2.373 A CGU 15 A OE12 CGU 15 1_555 A CA 207 J CA CA 1_555 metalc 2.414 A CGU 17 A OE11 CGU 17 1_555 A CA 203 F CA CA 1_555 metalc 2.372 A CGU 17 A OE21 CGU 17 1_555 A CA 204 G CA CA 1_555 metalc 2.526 A CGU 17 A OE11 CGU 17 1_555 A CA 204 G CA CA 1_555 metalc 2.257 A CGU 17 A OE21 CGU 17 1_555 A CA 205 H CA CA 1_555 metalc 2.514 A CGU 17 A OE22 CGU 17 1_555 A CA 205 H CA CA 1_555 metalc 2.388 A CGU 20 A OE21 CGU 20 1_555 A CA 207 J CA CA 1_555 metalc 2.273 A CGU 20 A OE11 CGU 20 1_555 A CA 207 J CA CA 1_555 metalc 2.495 A CGU 21 A OE11 CGU 21 1_555 A CA 205 H CA CA 1_555 metalc 2.421 A CGU 21 A OE12 CGU 21 1_555 A CA 206 I CA CA 1_555 metalc 2.415 A CGU 21 A OE22 CGU 21 1_555 A CA 206 I CA CA 1_555 metalc 2.423 A CGU 26 A OE12 CGU 26 1_555 A CA 201 D CA CA 1_555 metalc 2.389 A CGU 26 A OE21 CGU 26 1_555 A CA 201 D CA CA 1_555 metalc 2.451 A CGU 27 A OE12 CGU 27 1_555 A CA 202 E CA CA 1_555 metalc 2.111 A CGU 27 A OE11 CGU 27 1_555 A CA 203 F CA CA 1_555 metalc 2.343 A CGU 27 A OE22 CGU 27 1_555 A CA 204 G CA CA 1_555 metalc 2.585 A CGU 27 A OE11 CGU 27 1_555 A CA 204 G CA CA 1_555 metalc 2.166 A CGU 30 A OE11 CGU 30 1_555 A CA 201 D CA CA 1_555 metalc 2.503 A CGU 30 A OE22 CGU 30 1_555 A CA 201 D CA CA 1_555 metalc 2.452 A CGU 30 A OE21 CGU 30 1_555 A CA 202 E CA CA 1_555 metalc 2.712 A CGU 30 A OE22 CGU 30 1_555 A CA 202 E CA CA 1_555 metalc 2.497 A CGU 30 A OE21 CGU 30 1_555 A CA 203 F CA CA 1_555 metalc 2.481 A CA 202 E CA CA 1_555 A HOH 504 O O HOH 1_555 metalc 2.045 A CA 202 E CA CA 1_555 A HOH 507 O O HOH 1_555 metalc 2.139 A CA 203 F CA CA 1_555 A HOH 514 O O HOH 1_555 metalc 2.447 A CA 203 F CA CA 1_555 A HOH 519 O O HOH 1_555 metalc 2.577 A CA 203 F CA CA 1_555 A HOH 522 O O HOH 1_555 metalc 2.430 A CA 205 H CA CA 1_555 A HOH 527 O O HOH 1_555 metalc 2.202 A CA 206 I CA CA 1_555 A LPS 451 N OT1 LPS 1_555 metalc 2.722 A CA 206 I CA CA 1_555 A HOH 557 O O HOH 1_555 metalc 2.763 A CA 207 J CA CA 1_555 A HOH 537 O O HOH 1_555 HYDROLASE HYDROLASE A ASN 53 A ASN 53 1 A PRO 54 A PRO 54 -0.17 A TYR 94 A TYR 94 1 A PRO 95 A PRO 95 0.01 THRB_BOVIN UNP 1 44 P00735 ANKGFLEEVRKGNLERECLEEPCSREEAFEALESLSATDAFWAKYTACESARNPREKLNECLEGNCAEGVGMNYRGNVSV TRSGIECQLWRSRYPHKPEINSTTHPGADLRENFCRNPDGSITGPWCYTTSPTLRREECSVPVCGQ 44 189 1NL2 1 146 P00735 A 1 1 146 1 GLU modified residue CGU 7 1NL2 A P00735 UNP 50 7 1 GLU modified residue CGU 8 1NL2 A P00735 UNP 51 8 1 GLU modified residue CGU 15 1NL2 A P00735 UNP 58 15 1 GLU modified residue CGU 17 1NL2 A P00735 UNP 60 17 1 GLU modified residue CGU 20 1NL2 A P00735 UNP 63 20 1 GLU modified residue CGU 21 1NL2 A P00735 UNP 64 21 1 GLU modified residue CGU 26 1NL2 A P00735 UNP 69 26 1 GLU modified residue CGU 27 1NL2 A P00735 UNP 70 27 1 GLU modified residue CGU 30 1NL2 A P00735 UNP 73 30 1 GLU modified residue CGU 33 1NL2 A P00735 UNP 76 33 2 anti-parallel A TRP 126 A TRP 126 A TYR 128 A TYR 128 A ARG 136 A ARG 136 A GLU 138 A GLU 138 19 P 21 21 21