0.013924
0.000000
0.000000
0.000000
0.013177
0.000000
0.000000
0.000000
0.008708
0.00000
0.00000
0.00000
Smith, W.W.
Janson, C.A.
Zhao, B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
71.816
75.888
114.841
C40 H47 N5 O7
709.830
5-(2-MORPHOLIN-4-YLETHOXY)BENZOFURAN-2-CARBOXYLIC ACID ((S)-3-METHYL-1-{(S)-3-OXO-1-[2-(3-PYRIDIN-2-YLPHENYL)ACETYL]AZEPAN-4-YLCARBAMOYL}BUTYL)AMIDE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
O
N
3
N
C
N
4
N
C
N
5
N
N
N
6
N
C
N
7
N
C
N
8
N
C
N
9
N
O
Y
10
N
C
Y
11
N
C
Y
12
N
C
Y
13
N
C
Y
14
N
C
Y
15
N
C
Y
16
N
C
Y
17
N
C
Y
18
N
O
N
19
N
C
N
20
N
O
N
21
N
N
N
22
S
C
N
23
N
C
N
24
N
C
N
25
N
C
N
26
N
C
N
27
N
C
N
28
N
O
N
29
N
N
N
30
S
C
N
31
N
O
N
32
N
C
N
33
N
N
N
34
N
C
N
35
N
C
N
36
N
C
N
37
N
C
N
38
N
O
N
39
N
C
Y
40
N
C
Y
41
N
C
Y
42
N
C
Y
43
N
C
Y
44
N
C
Y
45
N
C
Y
46
N
C
Y
47
N
C
Y
48
N
C
Y
49
N
C
Y
50
N
C
Y
51
N
N
N
52
N
C
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
N
N
101
S
C
N
102
N
C
N
103
N
O
N
104
N
C
N
105
N
O
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
S
C
N
115
N
C
N
116
N
O
N
117
N
C
N
118
N
C
N
119
N
C
N
120
N
N
N
121
N
C
N
122
N
N
N
123
N
N
N
124
N
O
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
N
N
141
S
C
N
142
N
C
N
143
N
O
N
144
N
C
N
145
N
C
N
146
N
O
N
147
N
N
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
N
N
158
S
C
N
159
N
C
N
160
N
O
N
161
N
C
N
162
N
C
N
163
N
O
N
164
N
O
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
N
N
174
R
C
N
175
N
C
N
176
N
O
N
177
N
C
N
178
N
S
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
N
N
188
S
C
N
189
N
C
N
190
N
O
N
191
N
C
N
192
N
C
N
193
N
C
N
194
N
O
N
195
N
N
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
N
N
208
S
C
N
209
N
C
N
210
N
O
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
O
N
215
N
O
N
216
N
O
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
N
N
227
N
C
N
228
N
C
N
229
N
O
N
230
N
O
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
Y
241
N
C
Y
242
N
N
Y
243
N
C
Y
244
N
C
Y
245
N
N
N
246
N
O
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
N
N
258
S
C
N
259
N
C
N
260
N
O
N
261
S
C
N
262
N
C
N
263
N
C
N
264
N
C
N
265
N
O
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
N
N
280
S
C
N
281
N
C
N
282
N
O
N
283
N
C
N
284
N
C
N
285
N
C
N
286
N
C
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
N
C
N
306
N
C
N
307
N
C
N
308
N
C
N
309
N
N
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
N
331
N
C
N
332
N
S
N
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
N
374
N
C
N
375
N
C
N
376
N
O
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
N
N
387
S
C
N
388
N
C
N
389
N
O
N
390
N
C
N
391
N
O
N
392
N
O
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
N
N
401
S
C
N
402
N
C
N
403
N
O
N
404
R
C
N
405
N
O
N
406
N
C
N
407
N
O
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
N
N
418
S
C
N
419
N
C
N
420
N
O
N
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
C
Y
425
N
N
Y
426
N
C
Y
427
N
C
Y
428
N
C
Y
429
N
C
Y
430
N
C
N
431
N
O
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
N
N
445
S
C
N
446
N
C
N
447
N
O
N
448
N
C
Y
449
N
C
Y
450
N
C
Y
451
N
C
Y
452
N
C
Y
453
N
C
Y
454
N
C
N
455
N
O
N
456
N
O
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
N
N
469
S
C
N
470
N
C
N
471
N
O
N
472
N
C
N
473
N
C
N
474
N
C
N
475
N
O
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
Y
23
N
doub
Y
24
N
sing
Y
25
N
sing
N
26
N
sing
Y
27
N
doub
Y
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
N
33
N
sing
Y
34
N
doub
N
35
N
sing
Y
36
N
sing
N
37
N
sing
N
38
N
doub
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
doub
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
Y
84
N
doub
Y
85
N
sing
Y
86
N
sing
N
87
N
sing
Y
88
N
doub
N
89
N
sing
Y
90
N
sing
N
91
N
sing
Y
92
N
doub
Y
93
N
sing
N
94
N
sing
Y
95
N
doub
Y
96
N
sing
Y
97
N
sing
N
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
doub
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
doub
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
doub
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
Y
244
N
sing
Y
245
N
doub
Y
246
N
doub
N
247
N
sing
Y
248
N
sing
N
249
N
sing
Y
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
doub
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
Y
350
N
doub
Y
351
N
sing
Y
352
N
sing
N
353
N
sing
Y
354
N
doub
N
355
N
sing
Y
356
N
doub
N
357
N
sing
Y
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
doub
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
Y
419
N
doub
Y
420
N
sing
Y
421
N
sing
N
422
N
sing
Y
423
N
doub
Y
424
N
sing
Y
425
N
sing
N
426
N
sing
Y
427
N
sing
Y
428
N
doub
N
429
N
sing
Y
430
N
doub
N
431
N
sing
Y
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
doub
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
Y
447
N
doub
Y
448
N
sing
Y
449
N
sing
N
450
N
sing
Y
451
N
doub
N
452
N
sing
Y
453
N
doub
N
454
N
sing
Y
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
doub
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
44
1380
1395
10.1021/jm000481x
11311061
Azepanone-based inhibitors of human and rat cathepsin K
2001
10.2210/pdb1nl6/pdb
pdb_00001nl6
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2000-03-01
MARRESEARCH
Si 111
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
17-ID
APS
1.0
SYNCHROTRON
APS BEAMLINE 17-ID
23523.480
Cathepsin K
3.4.22.38
2
man
polymer
709.830
5-(2-MORPHOLIN-4-YLETHOXY)BENZOFURAN-2-CARBOXYLIC ACID ((S)-3-METHYL-1-{(S)-3-OXO-1-[2-(3-PYRIDIN-2-YLPHENYL)ACETYL]AZEPAN-4-YLCARBAMOYL}BUTYL)AMIDE
2
syn
non-polymer
Cathepsin O, Cathepsin X, Cathepsin O2
no
no
APDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRG
IDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNL
NHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM
APDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRG
IDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNL
NHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
fall armyworm
Spodoptera
sample
9606
Homo sapiens
SF9
7108
Spodoptera frugiperda
baculovirus
1
3.32
63.00
VAPOR DIFFUSION, SITTING DROP
8.0
10% PEG 8000, 0.1 M imidazole, 0.2 M calcium acetate, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2003-01-14
1
1
2008-04-29
1
2
2011-07-13
1
3
2017-10-11
1
4
2023-08-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Cysteine Protease Human Cathepsin K In Complex With The Covalent Inhibitor E-64
Cysteine Protease Human Cathepsin K In Complex With A Covalent Symmetric Diacylaminomethyl Ketone Inhibitor
Cysteine Protease Human Cathepsin K In Complex With A Covalent Propanone Inhibitor
Cysteine Protease Human Cathepsin K In Complex With A Covalent Pyrrolidinone Inhibitor
Cysteine Protease Human Cathepsin K In Complex With A Covalent Pyrrolidinone Inhibitor
RCSB
Y
RCSB
2003-01-06
REL
750
5-(2-MORPHOLIN-4-YLETHOXY)BENZOFURAN-2-CARBOXYLIC ACID ((S)-3-METHYL-1-{(S)-3-OXO-1-[2-(3-PYRIDIN-2-YLPHENYL)ACETYL]AZEPAN-4-YLCARBAMOYL}BUTYL)AMIDE
1ATK
PDB ENTRY 1ATK
PDB
experimental model
750
501
2
750
750
501
A
750
501
2
750
750
501
B
ALA
1
n
1
ALA
1
A
PRO
2
n
2
PRO
2
A
ASP
3
n
3
ASP
3
A
SER
4
n
4
SER
4
A
VAL
5
n
5
VAL
5
A
ASP
6
n
6
ASP
6
A
TYR
7
n
7
TYR
7
A
ARG
8
n
8
ARG
8
A
LYS
9
n
9
LYS
9
A
LYS
10
n
10
LYS
10
A
GLY
11
n
11
GLY
11
A
TYR
12
n
12
TYR
12
A
VAL
13
n
13
VAL
13
A
THR
14
n
14
THR
14
A
PRO
15
n
15
PRO
15
A
VAL
16
n
16
VAL
16
A
LYS
17
n
17
LYS
17
A
ASN
18
n
18
ASN
18
A
GLN
19
n
19
GLN
19
A
GLY
20
n
20
GLY
20
A
GLN
21
n
21
GLN
21
A
CYS
22
n
22
CYS
22
A
GLY
23
n
23
GLY
23
A
SER
24
n
24
SER
24
A
CYS
25
n
25
CYS
25
A
TRP
26
n
26
TRP
26
A
ALA
27
n
27
ALA
27
A
PHE
28
n
28
PHE
28
A
SER
29
n
29
SER
29
A
SER
30
n
30
SER
30
A
VAL
31
n
31
VAL
31
A
GLY
32
n
32
GLY
32
A
ALA
33
n
33
ALA
33
A
LEU
34
n
34
LEU
34
A
GLU
35
n
35
GLU
35
A
GLY
36
n
36
GLY
36
A
GLN
37
n
37
GLN
37
A
LEU
38
n
38
LEU
38
A
LYS
39
n
39
LYS
39
A
LYS
40
n
40
LYS
40
A
LYS
41
n
41
LYS
41
A
THR
42
n
42
THR
42
A
GLY
43
n
43
GLY
43
A
LYS
44
n
44
LYS
44
A
LEU
45
n
45
LEU
45
A
LEU
46
n
46
LEU
46
A
ASN
47
n
47
ASN
47
A
LEU
48
n
48
LEU
48
A
SER
49
n
49
SER
49
A
PRO
50
n
50
PRO
50
A
GLN
51
n
51
GLN
51
A
ASN
52
n
52
ASN
52
A
LEU
53
n
53
LEU
53
A
VAL
54
n
54
VAL
54
A
ASP
55
n
55
ASP
55
A
CYS
56
n
56
CYS
56
A
VAL
57
n
57
VAL
57
A
SER
58
n
58
SER
58
A
GLU
59
n
59
GLU
59
A
ASN
60
n
60
ASN
60
A
ASP
61
n
61
ASP
61
A
GLY
62
n
62
GLY
62
A
CYS
63
n
63
CYS
63
A
GLY
64
n
64
GLY
64
A
GLY
65
n
65
GLY
65
A
GLY
66
n
66
GLY
66
A
TYR
67
n
67
TYR
67
A
MET
68
n
68
MET
68
A
THR
69
n
69
THR
69
A
ASN
70
n
70
ASN
70
A
ALA
71
n
71
ALA
71
A
PHE
72
n
72
PHE
72
A
GLN
73
n
73
GLN
73
A
TYR
74
n
74
TYR
74
A
VAL
75
n
75
VAL
75
A
GLN
76
n
76
GLN
76
A
LYS
77
n
77
LYS
77
A
ASN
78
n
78
ASN
78
A
ARG
79
n
79
ARG
79
A
GLY
80
n
80
GLY
80
A
ILE
81
n
81
ILE
81
A
ASP
82
n
82
ASP
82
A
SER
83
n
83
SER
83
A
GLU
84
n
84
GLU
84
A
ASP
85
n
85
ASP
85
A
ALA
86
n
86
ALA
86
A
TYR
87
n
87
TYR
87
A
PRO
88
n
88
PRO
88
A
TYR
89
n
89
TYR
89
A
VAL
90
n
90
VAL
90
A
GLY
91
n
91
GLY
91
A
GLN
92
n
92
GLN
92
A
GLU
93
n
93
GLU
93
A
GLU
94
n
94
GLU
94
A
SER
95
n
95
SER
95
A
CYS
96
n
96
CYS
96
A
MET
97
n
97
MET
97
A
TYR
98
n
98
TYR
98
A
ASN
99
n
99
ASN
99
A
PRO
100
n
100
PRO
100
A
THR
101
n
101
THR
101
A
GLY
102
n
102
GLY
102
A
LYS
103
n
103
LYS
103
A
ALA
104
n
104
ALA
104
A
ALA
105
n
105
ALA
105
A
LYS
106
n
106
LYS
106
A
CYS
107
n
107
CYS
107
A
ARG
108
n
108
ARG
108
A
GLY
109
n
109
GLY
109
A
TYR
110
n
110
TYR
110
A
ARG
111
n
111
ARG
111
A
GLU
112
n
112
GLU
112
A
ILE
113
n
113
ILE
113
A
PRO
114
n
114
PRO
114
A
GLU
115
n
115
GLU
115
A
GLY
116
n
116
GLY
116
A
ASN
117
n
117
ASN
117
A
GLU
118
n
118
GLU
118
A
LYS
119
n
119
LYS
119
A
ALA
120
n
120
ALA
120
A
LEU
121
n
121
LEU
121
A
LYS
122
n
122
LYS
122
A
ARG
123
n
123
ARG
123
A
ALA
124
n
124
ALA
124
A
VAL
125
n
125
VAL
125
A
ALA
126
n
126
ALA
126
A
ARG
127
n
127
ARG
127
A
VAL
128
n
128
VAL
128
A
GLY
129
n
129
GLY
129
A
PRO
130
n
130
PRO
130
A
VAL
131
n
131
VAL
131
A
SER
132
n
132
SER
132
A
VAL
133
n
133
VAL
133
A
ALA
134
n
134
ALA
134
A
ILE
135
n
135
ILE
135
A
ASP
136
n
136
ASP
136
A
ALA
137
n
137
ALA
137
A
SER
138
n
138
SER
138
A
LEU
139
n
139
LEU
139
A
THR
140
n
140
THR
140
A
SER
141
n
141
SER
141
A
PHE
142
n
142
PHE
142
A
GLN
143
n
143
GLN
143
A
PHE
144
n
144
PHE
144
A
TYR
145
n
145
TYR
145
A
SER
146
n
146
SER
146
A
LYS
147
n
147
LYS
147
A
GLY
148
n
148
GLY
148
A
VAL
149
n
149
VAL
149
A
TYR
150
n
150
TYR
150
A
TYR
151
n
151
TYR
151
A
ASP
152
n
152
ASP
152
A
GLU
153
n
153
GLU
153
A
SER
154
n
154
SER
154
A
CYS
155
n
155
CYS
155
A
ASN
156
n
156
ASN
156
A
SER
157
n
157
SER
157
A
ASP
158
n
158
ASP
158
A
ASN
159
n
159
ASN
159
A
LEU
160
n
160
LEU
160
A
ASN
161
n
161
ASN
161
A
HIS
162
n
162
HIS
162
A
ALA
163
n
163
ALA
163
A
VAL
164
n
164
VAL
164
A
LEU
165
n
165
LEU
165
A
ALA
166
n
166
ALA
166
A
VAL
167
n
167
VAL
167
A
GLY
168
n
168
GLY
168
A
TYR
169
n
169
TYR
169
A
GLY
170
n
170
GLY
170
A
ILE
171
n
171
ILE
171
A
GLN
172
n
172
GLN
172
A
LYS
173
n
173
LYS
173
A
GLY
174
n
174
GLY
174
A
ASN
175
n
175
ASN
175
A
LYS
176
n
176
LYS
176
A
HIS
177
n
177
HIS
177
A
TRP
178
n
178
TRP
178
A
ILE
179
n
179
ILE
179
A
ILE
180
n
180
ILE
180
A
LYS
181
n
181
LYS
181
A
ASN
182
n
182
ASN
182
A
SER
183
n
183
SER
183
A
TRP
184
n
184
TRP
184
A
GLY
185
n
185
GLY
185
A
GLU
186
n
186
GLU
186
A
ASN
187
n
187
ASN
187
A
TRP
188
n
188
TRP
188
A
GLY
189
n
189
GLY
189
A
ASN
190
n
190
ASN
190
A
LYS
191
n
191
LYS
191
A
GLY
192
n
192
GLY
192
A
TYR
193
n
193
TYR
193
A
ILE
194
n
194
ILE
194
A
LEU
195
n
195
LEU
195
A
MET
196
n
196
MET
196
A
ALA
197
n
197
ALA
197
A
ARG
198
n
198
ARG
198
A
ASN
199
n
199
ASN
199
A
LYS
200
n
200
LYS
200
A
ASN
201
n
201
ASN
201
A
ASN
202
n
202
ASN
202
A
ALA
203
n
203
ALA
203
A
CYS
204
n
204
CYS
204
A
GLY
205
n
205
GLY
205
A
ILE
206
n
206
ILE
206
A
ALA
207
n
207
ALA
207
A
ASN
208
n
208
ASN
208
A
LEU
209
n
209
LEU
209
A
ALA
210
n
210
ALA
210
A
SER
211
n
211
SER
211
A
PHE
212
n
212
PHE
212
A
PRO
213
n
213
PRO
213
A
LYS
214
n
214
LYS
214
A
MET
215
n
215
MET
215
A
ALA
1
n
1
ALA
1
B
PRO
2
n
2
PRO
2
B
ASP
3
n
3
ASP
3
B
SER
4
n
4
SER
4
B
VAL
5
n
5
VAL
5
B
ASP
6
n
6
ASP
6
B
TYR
7
n
7
TYR
7
B
ARG
8
n
8
ARG
8
B
LYS
9
n
9
LYS
9
B
LYS
10
n
10
LYS
10
B
GLY
11
n
11
GLY
11
B
TYR
12
n
12
TYR
12
B
VAL
13
n
13
VAL
13
B
THR
14
n
14
THR
14
B
PRO
15
n
15
PRO
15
B
VAL
16
n
16
VAL
16
B
LYS
17
n
17
LYS
17
B
ASN
18
n
18
ASN
18
B
GLN
19
n
19
GLN
19
B
GLY
20
n
20
GLY
20
B
GLN
21
n
21
GLN
21
B
CYS
22
n
22
CYS
22
B
GLY
23
n
23
GLY
23
B
SER
24
n
24
SER
24
B
CYS
25
n
25
CYS
25
B
TRP
26
n
26
TRP
26
B
ALA
27
n
27
ALA
27
B
PHE
28
n
28
PHE
28
B
SER
29
n
29
SER
29
B
SER
30
n
30
SER
30
B
VAL
31
n
31
VAL
31
B
GLY
32
n
32
GLY
32
B
ALA
33
n
33
ALA
33
B
LEU
34
n
34
LEU
34
B
GLU
35
n
35
GLU
35
B
GLY
36
n
36
GLY
36
B
GLN
37
n
37
GLN
37
B
LEU
38
n
38
LEU
38
B
LYS
39
n
39
LYS
39
B
LYS
40
n
40
LYS
40
B
LYS
41
n
41
LYS
41
B
THR
42
n
42
THR
42
B
GLY
43
n
43
GLY
43
B
LYS
44
n
44
LYS
44
B
LEU
45
n
45
LEU
45
B
LEU
46
n
46
LEU
46
B
ASN
47
n
47
ASN
47
B
LEU
48
n
48
LEU
48
B
SER
49
n
49
SER
49
B
PRO
50
n
50
PRO
50
B
GLN
51
n
51
GLN
51
B
ASN
52
n
52
ASN
52
B
LEU
53
n
53
LEU
53
B
VAL
54
n
54
VAL
54
B
ASP
55
n
55
ASP
55
B
CYS
56
n
56
CYS
56
B
VAL
57
n
57
VAL
57
B
SER
58
n
58
SER
58
B
GLU
59
n
59
GLU
59
B
ASN
60
n
60
ASN
60
B
ASP
61
n
61
ASP
61
B
GLY
62
n
62
GLY
62
B
CYS
63
n
63
CYS
63
B
GLY
64
n
64
GLY
64
B
GLY
65
n
65
GLY
65
B
GLY
66
n
66
GLY
66
B
TYR
67
n
67
TYR
67
B
MET
68
n
68
MET
68
B
THR
69
n
69
THR
69
B
ASN
70
n
70
ASN
70
B
ALA
71
n
71
ALA
71
B
PHE
72
n
72
PHE
72
B
GLN
73
n
73
GLN
73
B
TYR
74
n
74
TYR
74
B
VAL
75
n
75
VAL
75
B
GLN
76
n
76
GLN
76
B
LYS
77
n
77
LYS
77
B
ASN
78
n
78
ASN
78
B
ARG
79
n
79
ARG
79
B
GLY
80
n
80
GLY
80
B
ILE
81
n
81
ILE
81
B
ASP
82
n
82
ASP
82
B
SER
83
n
83
SER
83
B
GLU
84
n
84
GLU
84
B
ASP
85
n
85
ASP
85
B
ALA
86
n
86
ALA
86
B
TYR
87
n
87
TYR
87
B
PRO
88
n
88
PRO
88
B
TYR
89
n
89
TYR
89
B
VAL
90
n
90
VAL
90
B
GLY
91
n
91
GLY
91
B
GLN
92
n
92
GLN
92
B
GLU
93
n
93
GLU
93
B
GLU
94
n
94
GLU
94
B
SER
95
n
95
SER
95
B
CYS
96
n
96
CYS
96
B
MET
97
n
97
MET
97
B
TYR
98
n
98
TYR
98
B
ASN
99
n
99
ASN
99
B
PRO
100
n
100
PRO
100
B
THR
101
n
101
THR
101
B
GLY
102
n
102
GLY
102
B
LYS
103
n
103
LYS
103
B
ALA
104
n
104
ALA
104
B
ALA
105
n
105
ALA
105
B
LYS
106
n
106
LYS
106
B
CYS
107
n
107
CYS
107
B
ARG
108
n
108
ARG
108
B
GLY
109
n
109
GLY
109
B
TYR
110
n
110
TYR
110
B
ARG
111
n
111
ARG
111
B
GLU
112
n
112
GLU
112
B
ILE
113
n
113
ILE
113
B
PRO
114
n
114
PRO
114
B
GLU
115
n
115
GLU
115
B
GLY
116
n
116
GLY
116
B
ASN
117
n
117
ASN
117
B
GLU
118
n
118
GLU
118
B
LYS
119
n
119
LYS
119
B
ALA
120
n
120
ALA
120
B
LEU
121
n
121
LEU
121
B
LYS
122
n
122
LYS
122
B
ARG
123
n
123
ARG
123
B
ALA
124
n
124
ALA
124
B
VAL
125
n
125
VAL
125
B
ALA
126
n
126
ALA
126
B
ARG
127
n
127
ARG
127
B
VAL
128
n
128
VAL
128
B
GLY
129
n
129
GLY
129
B
PRO
130
n
130
PRO
130
B
VAL
131
n
131
VAL
131
B
SER
132
n
132
SER
132
B
VAL
133
n
133
VAL
133
B
ALA
134
n
134
ALA
134
B
ILE
135
n
135
ILE
135
B
ASP
136
n
136
ASP
136
B
ALA
137
n
137
ALA
137
B
SER
138
n
138
SER
138
B
LEU
139
n
139
LEU
139
B
THR
140
n
140
THR
140
B
SER
141
n
141
SER
141
B
PHE
142
n
142
PHE
142
B
GLN
143
n
143
GLN
143
B
PHE
144
n
144
PHE
144
B
TYR
145
n
145
TYR
145
B
SER
146
n
146
SER
146
B
LYS
147
n
147
LYS
147
B
GLY
148
n
148
GLY
148
B
VAL
149
n
149
VAL
149
B
TYR
150
n
150
TYR
150
B
TYR
151
n
151
TYR
151
B
ASP
152
n
152
ASP
152
B
GLU
153
n
153
GLU
153
B
SER
154
n
154
SER
154
B
CYS
155
n
155
CYS
155
B
ASN
156
n
156
ASN
156
B
SER
157
n
157
SER
157
B
ASP
158
n
158
ASP
158
B
ASN
159
n
159
ASN
159
B
LEU
160
n
160
LEU
160
B
ASN
161
n
161
ASN
161
B
HIS
162
n
162
HIS
162
B
ALA
163
n
163
ALA
163
B
VAL
164
n
164
VAL
164
B
LEU
165
n
165
LEU
165
B
ALA
166
n
166
ALA
166
B
VAL
167
n
167
VAL
167
B
GLY
168
n
168
GLY
168
B
TYR
169
n
169
TYR
169
B
GLY
170
n
170
GLY
170
B
ILE
171
n
171
ILE
171
B
GLN
172
n
172
GLN
172
B
LYS
173
n
173
LYS
173
B
GLY
174
n
174
GLY
174
B
ASN
175
n
175
ASN
175
B
LYS
176
n
176
LYS
176
B
HIS
177
n
177
HIS
177
B
TRP
178
n
178
TRP
178
B
ILE
179
n
179
ILE
179
B
ILE
180
n
180
ILE
180
B
LYS
181
n
181
LYS
181
B
ASN
182
n
182
ASN
182
B
SER
183
n
183
SER
183
B
TRP
184
n
184
TRP
184
B
GLY
185
n
185
GLY
185
B
GLU
186
n
186
GLU
186
B
ASN
187
n
187
ASN
187
B
TRP
188
n
188
TRP
188
B
GLY
189
n
189
GLY
189
B
ASN
190
n
190
ASN
190
B
LYS
191
n
191
LYS
191
B
GLY
192
n
192
GLY
192
B
TYR
193
n
193
TYR
193
B
ILE
194
n
194
ILE
194
B
LEU
195
n
195
LEU
195
B
MET
196
n
196
MET
196
B
ALA
197
n
197
ALA
197
B
ARG
198
n
198
ARG
198
B
ASN
199
n
199
ASN
199
B
LYS
200
n
200
LYS
200
B
ASN
201
n
201
ASN
201
B
ASN
202
n
202
ASN
202
B
ALA
203
n
203
ALA
203
B
CYS
204
n
204
CYS
204
B
GLY
205
n
205
GLY
205
B
ILE
206
n
206
ILE
206
B
ALA
207
n
207
ALA
207
B
ASN
208
n
208
ASN
208
B
LEU
209
n
209
LEU
209
B
ALA
210
n
210
ALA
210
B
SER
211
n
211
SER
211
B
PHE
212
n
212
PHE
212
B
PRO
213
n
213
PRO
213
B
LYS
214
n
214
LYS
214
B
MET
215
n
215
MET
215
B
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
150
A
N
TYR
150
A
O
LEU
195
A
O
LEU
195
A
O
ILE
194
A
O
ILE
194
A
N
ILE
180
A
N
ILE
180
A
O
HIS
177
A
O
HIS
177
A
N
GLY
170
A
N
GLY
170
A
O
TYR
169
A
O
TYR
169
A
N
VAL
5
A
N
VAL
5
A
N
TYR
150
A
N
TYR
150
A
O
LEU
195
A
O
LEU
195
A
O
ILE
194
A
O
ILE
194
A
N
ILE
180
A
N
ILE
180
A
O
HIS
177
A
O
HIS
177
A
N
GLY
170
A
N
GLY
170
A
O
HIS
162
A
O
HIS
162
A
N
ILE
135
A
N
ILE
135
A
N
ARG
111
A
N
ARG
111
A
O
PHE
212
A
O
PHE
212
B
N
TYR
150
B
N
TYR
150
B
O
LEU
195
B
O
LEU
195
B
O
ILE
194
B
O
ILE
194
B
N
ILE
180
B
N
ILE
180
B
O
LYS
181
B
O
LYS
181
B
N
LEU
165
B
N
LEU
165
B
O
HIS
162
B
O
HIS
162
B
N
ILE
135
B
N
ILE
135
B
N
TYR
150
B
N
TYR
150
B
O
LEU
195
B
O
LEU
195
B
O
ILE
194
B
O
ILE
194
B
N
ILE
180
B
N
ILE
180
B
O
HIS
177
B
O
HIS
177
B
N
GLY
170
B
N
GLY
170
B
O
TYR
169
B
O
TYR
169
B
N
VAL
5
B
N
VAL
5
B
N
ARG
111
B
N
ARG
111
B
O
PHE
212
B
O
PHE
212
1
A
B
OE2
N
GLU
THR
186
101
2.14
1_555
2_454
1
A
ASP
3
-66.82
78.98
1
A
PRO
15
-48.30
162.40
1
A
SER
24
-99.08
40.46
1
A
GLN
76
-59.19
-70.32
1
A
GLN
92
-177.26
126.02
1
A
LYS
103
-31.74
119.82
1
A
ARG
108
-105.27
43.88
1
A
ALA
124
-46.00
-73.11
1
A
VAL
125
-38.92
-36.70
1
A
PRO
130
-39.34
123.19
1
A
SER
146
-151.00
-26.04
1
A
TYR
151
172.36
117.19
1
A
GLU
153
-59.37
6.24
1
A
ASN
161
-155.84
-3.62
1
A
GLN
172
-95.57
-90.57
1
A
LYS
173
-101.09
55.06
1
A
ALA
197
-38.57
136.97
1
A
LYS
200
-90.09
59.46
1
A
CYS
204
47.67
18.67
1
A
ALA
207
-104.46
51.26
1
A
LEU
209
-153.88
51.47
1
B
ASP
3
-67.19
80.25
1
B
TYR
7
-51.56
-7.17
1
B
PRO
15
-49.04
161.64
1
B
SER
24
-99.32
40.28
1
B
THR
42
-149.18
-1.35
1
B
GLN
92
-173.29
126.10
1
B
LYS
103
-35.10
116.94
1
B
ALA
105
178.08
178.35
1
B
ARG
108
-106.34
41.35
1
B
ALA
124
-43.88
-72.76
1
B
SER
146
-145.37
-25.11
1
B
TYR
151
173.20
119.79
1
B
GLU
153
-59.43
8.22
1
B
ASN
161
-157.02
-6.75
1
B
VAL
164
-123.25
-168.75
1
B
TYR
169
-174.31
148.73
1
B
GLN
172
-96.03
-91.55
1
B
LYS
173
-100.25
56.22
1
B
ALA
197
-32.71
137.14
1
B
ASN
199
67.62
-0.40
1
B
CYS
204
47.62
22.51
1
B
ALA
207
-108.91
49.32
1
B
LEU
209
-147.98
48.91
protein_rep.param
sb331750.param
-21.858
0
0
13.558
0
8.300
0.2979
0.2461
0.25
0.2461
2.8
6
1578
16025
15561
10
97
RANDOM
1
THROUGHOUT
2
MOLECULAR REPLACEMENT
PDB ENTRY 1ATK
Engh & Huber
2.8
6
0
3402
104
0
3298
.01
1.39
0.368
0.324
2.83
22
160
14141
13
95
2.55
99
1NL6
19740
17372
2
2
0.58
0.58
1
32
9.8
88
0.94
2.55
2.59
9.9
631
0.94
65
data collection
MAR345
data scaling
SCALEPACK
refinement
CNS
phasing
CNS
Crystal Structure Of The Cysteine Protease Human Cathepsin K In Complex With A Covalent Azepanone Inhibitor
1
N
N
1
N
N
2
N
N
2
N
N
A
TYR
7
A
TYR
7
HELX_P
A
GLY
11
A
GLY
11
1
1
5
A
SER
24
A
SER
24
HELX_P
A
GLY
43
A
GLY
43
1
2
20
A
SER
49
A
SER
49
HELX_P
A
VAL
57
A
VAL
57
1
3
9
A
ASP
61
A
ASP
61
HELX_P
A
GLY
65
A
GLY
65
5
4
5
A
MET
68
A
MET
68
HELX_P
A
ARG
79
A
ARG
79
1
5
12
A
ASN
99
A
ASN
99
HELX_P
A
LYS
103
A
LYS
103
5
6
5
A
ASN
117
A
ASN
117
HELX_P
A
GLY
129
A
GLY
129
1
7
13
A
LEU
139
A
LEU
139
HELX_P
A
PHE
144
A
PHE
144
1
8
6
A
ASN
202
A
ASN
202
HELX_P
A
ILE
206
A
ILE
206
5
9
5
B
TYR
7
B
TYR
7
HELX_P
B
GLY
11
B
GLY
11
1
10
5
B
SER
24
B
SER
24
HELX_P
B
GLY
43
B
GLY
43
1
11
20
B
SER
49
B
SER
49
HELX_P
B
VAL
57
B
VAL
57
1
12
9
B
ASP
61
B
ASP
61
HELX_P
B
GLY
65
B
GLY
65
5
13
5
B
MET
68
B
MET
68
HELX_P
B
ARG
79
B
ARG
79
1
14
12
B
ASN
99
B
ASN
99
HELX_P
B
LYS
103
B
LYS
103
5
15
5
B
ASN
117
B
ASN
117
HELX_P
B
GLY
129
B
GLY
129
1
16
13
B
LEU
139
B
LEU
139
HELX_P
B
PHE
144
B
PHE
144
1
17
6
B
ASN
202
B
ASN
202
HELX_P
B
ILE
206
B
ILE
206
5
18
5
disulf
2.022
A
CYS
22
A
SG
CYS
22
1_555
A
CYS
63
A
SG
CYS
63
1_555
disulf
2.046
A
CYS
56
A
SG
CYS
56
1_555
A
CYS
96
A
SG
CYS
96
1_555
disulf
2.036
A
CYS
155
A
SG
CYS
155
1_555
A
CYS
204
A
SG
CYS
204
1_555
disulf
2.032
B
CYS
22
B
SG
CYS
22
1_555
B
CYS
63
B
SG
CYS
63
1_555
disulf
2.043
B
CYS
56
B
SG
CYS
56
1_555
B
CYS
96
B
SG
CYS
96
1_555
disulf
2.038
B
CYS
155
B
SG
CYS
155
1_555
B
CYS
204
B
SG
CYS
204
1_555
covale
1.790
none
A
CYS
25
A
SG
CYS
25
1_555
A
750
501
C
C31
750
1_555
covale
1.820
none
B
CYS
25
B
SG
CYS
25
1_555
B
750
501
D
C31
750
1_555
HYDROLASE
HYDROLASE, SULFHYDRYL PROTEINASE
CATK_HUMAN
UNP
1
115
P43235
APDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRG
IDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNL
NHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM
115
329
1NL6
1
215
P43235
A
1
1
215
115
329
1NL6
1
215
P43235
B
1
1
215
5
5
2
5
5
2
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
149
A
VAL
149
A
TYR
150
A
TYR
150
A
TYR
193
A
TYR
193
A
ALA
197
A
ALA
197
A
LYS
176
A
LYS
176
A
LYS
181
A
LYS
181
A
HIS
162
A
HIS
162
A
ILE
171
A
ILE
171
A
VAL
5
A
VAL
5
A
ASP
6
A
ASP
6
A
VAL
149
A
VAL
149
A
TYR
150
A
TYR
150
A
TYR
193
A
TYR
193
A
ALA
197
A
ALA
197
A
LYS
176
A
LYS
176
A
LYS
181
A
LYS
181
A
HIS
162
A
HIS
162
A
ILE
171
A
ILE
171
A
VAL
131
A
VAL
131
A
ILE
135
A
ILE
135
A
TYR
110
A
TYR
110
A
GLU
112
A
GLU
112
A
SER
211
A
SER
211
A
PRO
213
A
PRO
213
B
VAL
149
B
VAL
149
B
TYR
150
B
TYR
150
B
TYR
193
B
TYR
193
B
ALA
197
B
ALA
197
B
LYS
176
B
LYS
176
B
LYS
181
B
LYS
181
B
HIS
162
B
HIS
162
B
ALA
166
B
ALA
166
B
VAL
131
B
VAL
131
B
ILE
135
B
ILE
135
B
VAL
149
B
VAL
149
B
TYR
150
B
TYR
150
B
TYR
193
B
TYR
193
B
ALA
197
B
ALA
197
B
LYS
176
B
LYS
176
B
LYS
181
B
LYS
181
B
GLY
168
B
GLY
168
B
ILE
171
B
ILE
171
B
VAL
5
B
VAL
5
B
ASP
6
B
ASP
6
B
TYR
110
B
TYR
110
B
GLU
112
B
GLU
112
B
SER
211
B
SER
211
B
PRO
213
B
PRO
213
BINDING SITE FOR RESIDUE 750 A 501
A
750
501
Software
22
BINDING SITE FOR RESIDUE 750 B 501
B
750
501
Software
24
A
GLN
19
A
GLN
19
22
1_555
A
GLY
20
A
GLY
20
22
1_555
A
CYS
22
A
CYS
22
22
1_555
A
GLY
23
A
GLY
23
22
1_555
A
SER
24
A
SER
24
22
1_555
A
CYS
25
A
CYS
25
22
1_555
A
TRP
26
A
TRP
26
22
1_555
A
SER
58
A
SER
58
22
1_555
A
GLU
59
A
GLU
59
22
1_555
A
GLY
65
A
GLY
65
22
1_555
A
GLY
66
A
GLY
66
22
1_555
A
TYR
67
A
TYR
67
22
1_555
A
ALA
134
A
ALA
134
22
1_555
A
LEU
160
A
LEU
160
22
1_555
A
ASN
161
A
ASN
161
22
1_555
A
HIS
162
A
HIS
162
22
1_555
A
TRP
184
A
TRP
184
22
1_555
A
TRP
188
A
TRP
188
22
1_555
B
TYR
67
B
TYR
67
22
4_446
B
THR
69
B
THR
69
22
4_446
B
GLU
112
B
GLU
112
22
4_446
B
LEU
209
B
LEU
209
22
4_446
A
TYR
67
A
TYR
67
24
4_546
A
THR
69
A
THR
69
24
4_546
A
GLU
112
A
GLU
112
24
4_546
A
LEU
209
A
LEU
209
24
4_546
B
GLN
19
B
GLN
19
24
1_555
B
GLY
20
B
GLY
20
24
1_555
B
CYS
22
B
CYS
22
24
1_555
B
GLY
23
B
GLY
23
24
1_555
B
SER
24
B
SER
24
24
1_555
B
CYS
25
B
CYS
25
24
1_555
B
TRP
26
B
TRP
26
24
1_555
B
LYS
41
B
LYS
41
24
4_546
B
THR
42
B
THR
42
24
4_546
B
SER
58
B
SER
58
24
1_555
B
GLU
59
B
GLU
59
24
1_555
B
GLY
65
B
GLY
65
24
1_555
B
GLY
66
B
GLY
66
24
1_555
B
TYR
67
B
TYR
67
24
1_555
B
ALA
134
B
ALA
134
24
1_555
B
LEU
160
B
LEU
160
24
1_555
B
ASN
161
B
ASN
161
24
1_555
B
HIS
162
B
HIS
162
24
1_555
B
TRP
184
B
TRP
184
24
1_555
B
TRP
188
B
TRP
188
24
1_555
19
P 21 21 21