0.016854
0.009731
0.000000
0.000000
0.019461
0.000000
0.000000
0.000000
0.015703
0.00000
0.00000
0.00000
Ennifar, E.
Walter, P.
Dumas, P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
59.333
59.333
63.683
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
H2 O
18.015
WATER
non-polymer
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
R
C
N
49
N
O
N
50
R
C
N
51
N
N
N
52
N
C
N
53
N
O
N
54
N
N
N
55
N
C
N
56
N
N
N
57
N
C
N
58
N
C
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
O
N
74
N
P
N
75
N
O
N
76
N
O
N
77
N
O
N
78
N
C
N
79
R
C
N
80
N
O
N
81
S
C
N
82
N
O
N
83
R
C
N
84
N
O
N
85
R
C
Y
86
N
N
Y
87
N
C
Y
88
N
N
Y
89
N
C
N
90
N
C
N
91
N
O
N
92
N
N
N
93
N
C
N
94
N
N
N
95
N
N
Y
96
N
C
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
O
N
112
N
H
N
113
N
H
N
114
N
O
N
115
N
P
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
C
N
120
R
C
N
121
N
O
N
122
S
C
N
123
N
O
N
124
R
C
N
125
N
O
N
126
R
C
N
127
N
N
N
128
N
C
N
129
N
O
N
130
N
N
N
131
N
C
N
132
N
O
N
133
N
C
N
134
N
C
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
doub
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
doub
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
Y
100
N
sing
Y
101
N
sing
Y
102
N
doub
N
103
N
sing
Y
104
N
sing
N
105
N
sing
Y
106
N
doub
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
31
2671
2682
10.1093/nar/gkg350
12736317
A crystallographic study of the binding of 13 metal ions to two related RNA duplexes.
2003
10.2210/pdb1nlc/pdb
pdb_00001nlc
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
MARRESEARCH
crystal
SINGLE WAVELENGTH
M
x-ray
1
1.26
1.0
BW7A
EMBL/DESY, HAMBURG
1.26
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE BW7A
7402.472
HIV-1 DIS(MAL) genomic RNA
2
syn
polymer
65.409
ZINC ION
6
syn
non-polymer
18.015
water
283
nat
water
no
no
CUUGCUGAGGUGCACACAGCAAG
CUUGCUGAGGUGCACACAGCAAG
A,B
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
1
2.19
43.72
VAPOR DIFFUSION, SITTING DROP
7.0
MPD, Cacodylate, KCl, MgCl2, spermine, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 310K
310
20.635
1
19
A
1
B
23
-0.986
A_C1:G23_B
1
-26.168
0.132
-0.281
-0.087
2.311
1
20
A
2
B
22
5.107
A_U2:A22_B
2
-21.085
0.082
-0.031
-0.246
4.777
1
20
A
3
B
21
4.025
A_U3:A21_B
3
-17.915
-0.091
-0.099
-0.215
-5.069
1
19
A
4
B
20
1.314
A_G4:C20_B
4
-15.017
0.044
0.130
-0.131
-5.373
1
19
A
5
B
19
-1.592
A_C5:G19_B
5
-15.986
0.262
0.042
-0.188
-7.417
1
20
A
6
B
18
2.208
A_U6:A18_B
6
-9.321
0.060
0.361
-0.141
-5.167
1
19
A
7
B
17
1.667
A_G7:C17_B
7
-18.322
-0.267
-0.208
-0.185
23.596
8
A
9
B
16
-10.386
A_G9:A16_B
8
-24.708
-0.200
-0.388
1.493
-8.056
1
19
A
10
B
15
3.032
A_G10:C15_B
9
-10.709
-0.284
-0.040
-0.083
-1.339
1
20
A
11
B
14
1.835
A_U11:A14_B
10
-15.404
-0.423
0.038
0.074
-5.081
1
19
A
12
B
13
-1.723
A_G12:C13_B
11
-12.620
-0.306
0.330
-0.130
-1.830
1
19
A
13
B
12
-1.940
A_C13:G12_B
12
-9.836
-0.194
0.322
-0.184
6.686
1
20
A
14
B
11
2.087
A_A14:U11_B
13
-10.562
0.240
0.362
-0.061
3.532
1
19
A
15
B
10
1.156
A_C15:G10_B
14
-13.428
0.214
0.314
-0.066
-21.322
8
A
16
B
9
-13.347
A_A16:G9_B
15
-25.391
-0.075
-0.358
1.385
4.350
1
19
A
17
B
7
-1.862
A_C17:G7_B
16
-10.039
0.260
-0.220
-0.033
10.104
1
20
A
18
B
6
2.190
A_A18:U6_B
17
-9.374
0.112
0.314
-0.170
4.628
1
19
A
19
B
5
-0.160
A_G19:C5_B
18
-21.334
-0.094
0.183
-0.231
0.744
1
19
A
20
B
4
4.497
A_C20:G4_B
19
-18.374
0.483
0.016
-0.116
-2.535
1
20
A
21
B
3
7.056
A_A21:U3_B
20
-11.874
-0.099
-0.080
-0.121
4.994
1
20
A
22
B
2
5.995
A_A22:U2_B
21
-10.834
-0.006
0.288
-0.136
1.482
1
19
A
23
B
1
-0.309
A_G23:C1_B
22
-21.738
-0.229
-0.004
-0.297
2.814
39.723
A
A
1
2
24.801
B
B
23
22
3.685
16.319
-0.407
-1.468
AA_C1U2:A22G23_BB
1
-6.203
9.427
35.821
-4.155
-0.160
2.832
32.022
A
A
2
3
12.648
B
B
22
21
3.105
6.920
-0.129
-0.970
AA_U2U3:A21A22_BB
2
-2.054
3.753
31.219
-2.906
-0.108
2.538
36.502
A
A
3
4
21.528
B
B
21
20
3.409
13.193
0.324
-1.810
AA_U3G4:C20A21_BB
3
-1.814
2.960
34.063
-4.611
-0.754
2.596
34.038
A
A
4
5
16.652
B
B
20
19
3.118
9.622
-0.685
-1.436
AA_G4C5:G19C20_BB
4
0.351
-0.608
32.686
-3.821
1.221
2.957
31.338
A
A
5
6
13.495
B
B
19
18
3.323
7.226
0.523
-1.180
AA_C5U6:A18G19_BB
5
-0.834
1.557
30.502
-3.510
-1.121
2.279
34.175
A
A
6
7
27.176
B
B
18
17
3.078
15.304
0.780
-1.314
AA_U6G7:C17A18_BB
6
7.191
-12.768
29.807
-4.364
-0.328
2.509
40.731
A
A
7
9
5.282
B
B
17
16
2.688
3.667
-1.803
0.111
AA_G7G9:A16C17_BB
7
3.932
-5.664
40.389
-0.164
2.937
2.309
40.044
A
A
9
10
27.084
B
B
16
15
3.720
17.832
0.076
-2.246
AA_G9G10:C15A16_BB
8
-7.380
11.209
35.255
-5.294
-0.944
2.904
32.582
A
A
10
11
4.244
B
B
15
14
3.010
2.379
-0.522
-1.397
AA_G10U11:A14C15_BB
9
-0.038
0.067
32.497
-2.865
0.925
2.636
32.736
A
A
11
12
16.800
B
B
14
13
3.274
9.343
0.611
-1.768
AA_U11G12:C13A14_BB
10
-0.881
1.584
31.397
-4.625
-1.225
3.009
29.580
A
A
12
13
5.998
B
B
13
12
3.195
3.057
-0.292
-1.748
AA_G12C13:G12C13_BB
11
-0.769
1.508
29.416
-4.039
0.417
2.416
33.058
A
A
13
14
11.955
B
B
12
11
2.780
6.752
0.038
-1.513
AA_C13A14:U11G12_BB
12
-2.144
3.796
32.310
-3.577
-0.358
3.325
32.681
A
A
14
15
1.788
B
B
11
10
3.361
1.005
0.368
-1.701
AA_A14C15:G10U11_BB
13
2.247
-3.997
32.591
-3.201
-0.256
2.226
38.683
A
A
15
16
23.030
B
B
10
9
3.407
14.788
-0.514
-2.076
AA_C15A16:G9G10_BB
14
7.777
-12.111
35.013
-4.784
1.644
2.740
39.941
A
A
16
17
-6.250
B
B
9
7
3.135
-4.222
1.282
-0.086
AA_A16C17:G7G9_BB
15
-9.711
14.375
38.567
0.318
-2.900
2.105
34.386
A
A
17
18
26.068
B
B
7
6
2.883
14.911
-0.122
-1.199
AA_C17A18:U6G7_BB
16
-2.684
4.692
30.959
-3.905
-0.132
2.886
32.787
A
A
18
19
18.623
B
B
6
5
3.417
10.338
0.257
-1.213
AA_A18G19:C5U6_BB
17
1.546
-2.785
31.119
-3.910
-0.191
3.167
37.703
A
A
19
20
6.764
B
B
5
4
3.318
4.359
0.802
-1.585
AA_G19C20:G4C5_BB
18
2.628
-4.078
37.370
-3.015
-0.902
2.315
30.544
A
A
20
21
24.909
B
B
4
3
3.240
12.738
-0.763
-1.543
AA_C20A21:U3G4_BB
19
0.461
-0.902
27.815
-5.183
1.530
2.692
32.462
A
A
21
22
17.351
B
B
3
2
3.032
9.560
-0.246
-0.767
AA_A21A22:U2U3_BB
20
-1.502
2.727
31.023
-2.875
0.204
2.736
34.615
A
A
22
23
20.840
B
B
2
1
3.336
12.121
0.364
-1.227
AA_A22G23:C1U2_BB
21
4.216
-7.249
32.216
-3.862
0.015
chem_comp_atom
chem_comp_bond
database_2
diffrn_source
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-05-13
1
1
2008-04-29
1
2
2011-07-13
1
3
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_diffrn_source.pdbx_synchrotron_site
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
HIV-1 DIS duplex(Mal) Mg-soaked
RCSB
Y
RCSB
2003-01-07
REL
REL
ZN
ZINC ION
HOH
water
HIV-1 5' untranslated region
sample
ZN
54
2
ZN
ZN
54
A
ZO3
50
2
ZN
ZN
50
A
ZN
53
2
ZN
ZN
53
B
ZN
55
2
ZN
ZN
55
B
ZNO
51
2
ZN
ZN
51
B
ZO3
52
2
ZN
ZN
52
B
HOH
102
3
HOH
HOH
102
A
HOH
103
3
HOH
HOH
103
A
HOH
104
3
HOH
HOH
104
A
HOH
105
3
HOH
HOH
105
A
HOH
106
3
HOH
HOH
106
A
HOH
107
3
HOH
HOH
107
A
HOH
116
3
HOH
HOH
116
A
HOH
117
3
HOH
HOH
117
A
HOH
118
3
HOH
HOH
118
A
HOH
119
3
HOH
HOH
119
A
HOH
120
3
HOH
HOH
120
A
HOH
121
3
HOH
HOH
121
A
HOH
123
3
HOH
HOH
123
A
HOH
124
3
HOH
HOH
124
A
HOH
127
3
HOH
HOH
127
A
HOH
132
3
HOH
HOH
132
A
HOH
135
3
HOH
HOH
135
A
HOH
136
3
HOH
HOH
136
A
HOH
137
3
HOH
HOH
137
A
HOH
138
3
HOH
HOH
138
A
HOH
139
3
HOH
HOH
139
A
HOH
141
3
HOH
HOH
141
A
HOH
143
3
HOH
HOH
143
A
HOH
144
3
HOH
HOH
144
A
HOH
146
3
HOH
HOH
146
A
HOH
147
3
HOH
HOH
147
A
HOH
149
3
HOH
HOH
149
A
HOH
156
3
HOH
HOH
156
A
HOH
162
3
HOH
HOH
162
A
HOH
163
3
HOH
HOH
163
A
HOH
164
3
HOH
HOH
164
A
HOH
165
3
HOH
HOH
165
A
HOH
168
3
HOH
HOH
168
A
HOH
169
3
HOH
HOH
169
A
HOH
171
3
HOH
HOH
171
A
HOH
172
3
HOH
HOH
172
A
HOH
175
3
HOH
HOH
175
A
HOH
182
3
HOH
HOH
182
A
HOH
183
3
HOH
HOH
183
A
HOH
185
3
HOH
HOH
185
A
HOH
186
3
HOH
HOH
186
A
HOH
189
3
HOH
HOH
189
A
HOH
191
3
HOH
HOH
191
A
HOH
192
3
HOH
HOH
192
A
HOH
193
3
HOH
HOH
193
A
HOH
194
3
HOH
HOH
194
A
HOH
195
3
HOH
HOH
195
A
HOH
196
3
HOH
HOH
196
A
HOH
197
3
HOH
HOH
197
A
HOH
198
3
HOH
HOH
198
A
HOH
200
3
HOH
HOH
200
A
HOH
201
3
HOH
HOH
201
A
HOH
202
3
HOH
HOH
202
A
HOH
203
3
HOH
HOH
203
A
HOH
204
3
HOH
HOH
204
A
HOH
205
3
HOH
HOH
205
A
HOH
207
3
HOH
HOH
207
A
HOH
211
3
HOH
HOH
211
A
HOH
212
3
HOH
HOH
212
A
HOH
213
3
HOH
HOH
213
A
HOH
214
3
HOH
HOH
214
A
HOH
216
3
HOH
HOH
216
A
HOH
218
3
HOH
HOH
218
A
HOH
219
3
HOH
HOH
219
A
HOH
220
3
HOH
HOH
220
A
HOH
223
3
HOH
HOH
223
A
HOH
225
3
HOH
HOH
225
A
HOH
227
3
HOH
HOH
227
A
HOH
228
3
HOH
HOH
228
A
HOH
229
3
HOH
HOH
229
A
HOH
231
3
HOH
HOH
231
A
HOH
232
3
HOH
HOH
232
A
HOH
233
3
HOH
HOH
233
A
HOH
234
3
HOH
HOH
234
A
HOH
237
3
HOH
HOH
237
A
HOH
239
3
HOH
HOH
239
A
HOH
240
3
HOH
HOH
240
A
HOH
241
3
HOH
HOH
241
A
HOH
242
3
HOH
HOH
242
A
HOH
243
3
HOH
HOH
243
A
HOH
244
3
HOH
HOH
244
A
HOH
245
3
HOH
HOH
245
A
HOH
246
3
HOH
HOH
246
A
HOH
247
3
HOH
HOH
247
A
HOH
248
3
HOH
HOH
248
A
HOH
249
3
HOH
HOH
249
A
HOH
250
3
HOH
HOH
250
A
HOH
253
3
HOH
HOH
253
A
HOH
256
3
HOH
HOH
256
A
HOH
257
3
HOH
HOH
257
A
HOH
260
3
HOH
HOH
260
A
HOH
261
3
HOH
HOH
261
A
HOH
264
3
HOH
HOH
264
A
HOH
266
3
HOH
HOH
266
A
HOH
267
3
HOH
HOH
267
A
HOH
268
3
HOH
HOH
268
A
HOH
269
3
HOH
HOH
269
A
HOH
270
3
HOH
HOH
270
A
HOH
271
3
HOH
HOH
271
A
HOH
272
3
HOH
HOH
272
A
HOH
273
3
HOH
HOH
273
A
HOH
274
3
HOH
HOH
274
A
HOH
277
3
HOH
HOH
277
A
HOH
278
3
HOH
HOH
278
A
HOH
279
3
HOH
HOH
279
A
HOH
280
3
HOH
HOH
280
A
HOH
281
3
HOH
HOH
281
A
HOH
283
3
HOH
HOH
283
A
HOH
286
3
HOH
HOH
286
A
HOH
287
3
HOH
HOH
287
A
HOH
288
3
HOH
HOH
288
A
HOH
289
3
HOH
HOH
289
A
HOH
290
3
HOH
HOH
290
A
HOH
293
3
HOH
HOH
293
A
HOH
294
3
HOH
HOH
294
A
HOH
295
3
HOH
HOH
295
A
HOH
297
3
HOH
HOH
297
A
HOH
298
3
HOH
HOH
298
A
HOH
299
3
HOH
HOH
299
A
HOH
300
3
HOH
HOH
300
A
HOH
303
3
HOH
HOH
303
A
HOH
304
3
HOH
HOH
304
A
HOH
306
3
HOH
HOH
306
A
HOH
308
3
HOH
HOH
308
A
HOH
311
3
HOH
HOH
311
A
HOH
313
3
HOH
HOH
313
A
HOH
318
3
HOH
HOH
318
A
HOH
319
3
HOH
HOH
319
A
HOH
320
3
HOH
HOH
320
A
HOH
322
3
HOH
HOH
322
A
HOH
323
3
HOH
HOH
323
A
HOH
327
3
HOH
HOH
327
A
HOH
329
3
HOH
HOH
329
A
HOH
331
3
HOH
HOH
331
A
HOH
332
3
HOH
HOH
332
A
HOH
338
3
HOH
HOH
338
A
HOH
339
3
HOH
HOH
339
A
HOH
340
3
HOH
HOH
340
A
HOH
343
3
HOH
HOH
343
A
HOH
344
3
HOH
HOH
344
A
HOH
345
3
HOH
HOH
345
A
HOH
347
3
HOH
HOH
347
A
HOH
348
3
HOH
HOH
348
A
HOH
350
3
HOH
HOH
350
A
HOH
351
3
HOH
HOH
351
A
HOH
352
3
HOH
HOH
352
A
HOH
359
3
HOH
HOH
359
A
HOH
360
3
HOH
HOH
360
A
HOH
363
3
HOH
HOH
363
A
HOH
365
3
HOH
HOH
365
A
HOH
367
3
HOH
HOH
367
A
HOH
369
3
HOH
HOH
369
A
HOH
370
3
HOH
HOH
370
A
HOH
374
3
HOH
HOH
374
A
HOH
377
3
HOH
HOH
377
A
ZO3
50
3
HOH
HOH
386
A
ZO3
50
3
HOH
HOH
387
A
ZO3
50
3
HOH
HOH
388
A
ZNO
51
3
HOH
HOH
389
A
HOH
100
3
HOH
HOH
100
B
HOH
101
3
HOH
HOH
101
B
HOH
108
3
HOH
HOH
108
B
HOH
109
3
HOH
HOH
109
B
HOH
110
3
HOH
HOH
110
B
HOH
111
3
HOH
HOH
111
B
HOH
112
3
HOH
HOH
112
B
HOH
113
3
HOH
HOH
113
B
HOH
114
3
HOH
HOH
114
B
HOH
115
3
HOH
HOH
115
B
HOH
122
3
HOH
HOH
122
B
HOH
125
3
HOH
HOH
125
B
HOH
126
3
HOH
HOH
126
B
HOH
128
3
HOH
HOH
128
B
HOH
129
3
HOH
HOH
129
B
HOH
130
3
HOH
HOH
130
B
HOH
131
3
HOH
HOH
131
B
HOH
133
3
HOH
HOH
133
B
HOH
134
3
HOH
HOH
134
B
HOH
140
3
HOH
HOH
140
B
HOH
142
3
HOH
HOH
142
B
HOH
145
3
HOH
HOH
145
B
HOH
148
3
HOH
HOH
148
B
HOH
150
3
HOH
HOH
150
B
HOH
151
3
HOH
HOH
151
B
HOH
152
3
HOH
HOH
152
B
HOH
153
3
HOH
HOH
153
B
HOH
155
3
HOH
HOH
155
B
HOH
157
3
HOH
HOH
157
B
HOH
158
3
HOH
HOH
158
B
HOH
159
3
HOH
HOH
159
B
HOH
160
3
HOH
HOH
160
B
HOH
167
3
HOH
HOH
167
B
HOH
170
3
HOH
HOH
170
B
HOH
173
3
HOH
HOH
173
B
HOH
174
3
HOH
HOH
174
B
HOH
176
3
HOH
HOH
176
B
HOH
177
3
HOH
HOH
177
B
HOH
178
3
HOH
HOH
178
B
HOH
179
3
HOH
HOH
179
B
HOH
180
3
HOH
HOH
180
B
HOH
181
3
HOH
HOH
181
B
HOH
184
3
HOH
HOH
184
B
HOH
187
3
HOH
HOH
187
B
HOH
188
3
HOH
HOH
188
B
HOH
190
3
HOH
HOH
190
B
HOH
199
3
HOH
HOH
199
B
HOH
206
3
HOH
HOH
206
B
HOH
208
3
HOH
HOH
208
B
HOH
209
3
HOH
HOH
209
B
HOH
210
3
HOH
HOH
210
B
HOH
215
3
HOH
HOH
215
B
HOH
217
3
HOH
HOH
217
B
HOH
221
3
HOH
HOH
221
B
HOH
222
3
HOH
HOH
222
B
HOH
224
3
HOH
HOH
224
B
HOH
226
3
HOH
HOH
226
B
HOH
230
3
HOH
HOH
230
B
HOH
235
3
HOH
HOH
235
B
HOH
236
3
HOH
HOH
236
B
HOH
238
3
HOH
HOH
238
B
HOH
251
3
HOH
HOH
251
B
HOH
252
3
HOH
HOH
252
B
HOH
254
3
HOH
HOH
254
B
HOH
255
3
HOH
HOH
255
B
HOH
258
3
HOH
HOH
258
B
HOH
259
3
HOH
HOH
259
B
HOH
262
3
HOH
HOH
262
B
HOH
263
3
HOH
HOH
263
B
HOH
265
3
HOH
HOH
265
B
HOH
275
3
HOH
HOH
275
B
HOH
276
3
HOH
HOH
276
B
HOH
282
3
HOH
HOH
282
B
HOH
284
3
HOH
HOH
284
B
HOH
292
3
HOH
HOH
292
B
HOH
296
3
HOH
HOH
296
B
HOH
301
3
HOH
HOH
301
B
HOH
302
3
HOH
HOH
302
B
HOH
305
3
HOH
HOH
305
B
HOH
307
3
HOH
HOH
307
B
HOH
309
3
HOH
HOH
309
B
HOH
310
3
HOH
HOH
310
B
HOH
312
3
HOH
HOH
312
B
HOH
314
3
HOH
HOH
314
B
HOH
315
3
HOH
HOH
315
B
HOH
316
3
HOH
HOH
316
B
HOH
317
3
HOH
HOH
317
B
HOH
321
3
HOH
HOH
321
B
HOH
324
3
HOH
HOH
324
B
HOH
325
3
HOH
HOH
325
B
HOH
326
3
HOH
HOH
326
B
HOH
328
3
HOH
HOH
328
B
HOH
330
3
HOH
HOH
330
B
HOH
333
3
HOH
HOH
333
B
HOH
334
3
HOH
HOH
334
B
HOH
335
3
HOH
HOH
335
B
HOH
336
3
HOH
HOH
336
B
HOH
337
3
HOH
HOH
337
B
HOH
341
3
HOH
HOH
341
B
HOH
342
3
HOH
HOH
342
B
HOH
349
3
HOH
HOH
349
B
HOH
353
3
HOH
HOH
353
B
HOH
354
3
HOH
HOH
354
B
HOH
355
3
HOH
HOH
355
B
HOH
357
3
HOH
HOH
357
B
HOH
361
3
HOH
HOH
361
B
HOH
362
3
HOH
HOH
362
B
HOH
364
3
HOH
HOH
364
B
HOH
366
3
HOH
HOH
366
B
HOH
368
3
HOH
HOH
368
B
HOH
371
3
HOH
HOH
371
B
HOH
372
3
HOH
HOH
372
B
HOH
373
3
HOH
HOH
373
B
HOH
375
3
HOH
HOH
375
B
HOH
376
3
HOH
HOH
376
B
HOH
378
3
HOH
HOH
378
B
HOH
380
3
HOH
HOH
380
B
HOH
381
3
HOH
HOH
381
B
HOH
384
3
HOH
HOH
384
B
HOH
385
3
HOH
HOH
385
B
ZNO
51
3
HOH
HOH
390
B
ZO3
52
3
HOH
HOH
391
B
ZO3
52
3
HOH
HOH
392
B
ZO3
52
3
HOH
HOH
393
B
C
1
n
1
C
1
A
U
2
n
2
U
2
A
U
3
n
3
U
3
A
G
4
n
4
G
4
A
C
5
n
5
C
5
A
U
6
n
6
U
6
A
G
7
n
7
G
7
A
A
8
n
8
A
8
A
G
9
n
9
G
9
A
G
10
n
10
G
10
A
U
11
n
11
U
11
A
G
12
n
12
G
12
A
C
13
n
13
C
13
A
A
14
n
14
A
14
A
C
15
n
15
C
15
A
A
16
n
16
A
16
A
C
17
n
17
C
17
A
A
18
n
18
A
18
A
G
19
n
19
G
19
A
C
20
n
20
C
20
A
A
21
n
21
A
21
A
A
22
n
22
A
22
A
G
23
n
23
G
23
A
C
1
n
1
C
1
B
U
2
n
2
U
2
B
U
3
n
3
U
3
B
G
4
n
4
G
4
B
C
5
n
5
C
5
B
U
6
n
6
U
6
B
G
7
n
7
G
7
B
A
8
n
8
A
8
B
G
9
n
9
G
9
B
G
10
n
10
G
10
B
U
11
n
11
U
11
B
G
12
n
12
G
12
B
C
13
n
13
C
13
B
A
14
n
14
A
14
B
C
15
n
15
C
15
B
A
16
n
16
A
16
B
C
17
n
17
C
17
B
A
18
n
18
A
18
B
G
19
n
19
G
19
B
C
20
n
20
C
20
B
A
21
n
21
A
21
B
A
22
n
22
A
22
B
G
23
n
23
G
23
B
author_defined_assembly
2
dimeric
A
A
8
A
OP2
A
8
1_555
A
ZN
54
C
ZN
ZN
1_555
A
G
9
A
N7
G
9
1_555
85.8
A
A
8
A
OP2
A
8
1_555
A
ZN
54
C
ZN
ZN
1_555
A
HOH
137
I
O
HOH
1_555
89.3
A
G
9
A
N7
G
9
1_555
A
ZN
54
C
ZN
ZN
1_555
A
HOH
137
I
O
HOH
1_555
174.6
A
A
8
A
OP2
A
8
1_555
A
ZN
54
C
ZN
ZN
1_555
A
HOH
156
I
O
HOH
1_555
87.0
A
G
9
A
N7
G
9
1_555
A
ZN
54
C
ZN
ZN
1_555
A
HOH
156
I
O
HOH
1_555
88.8
A
HOH
137
I
O
HOH
1_555
A
ZN
54
C
ZN
ZN
1_555
A
HOH
156
I
O
HOH
1_555
93.2
A
A
8
A
OP2
A
8
1_555
A
ZN
54
C
ZN
ZN
1_555
A
HOH
241
I
O
HOH
1_555
91.3
A
G
9
A
N7
G
9
1_555
A
ZN
54
C
ZN
ZN
1_555
A
HOH
241
I
O
HOH
1_555
83.9
A
HOH
137
I
O
HOH
1_555
A
ZN
54
C
ZN
ZN
1_555
A
HOH
241
I
O
HOH
1_555
93.9
A
HOH
156
I
O
HOH
1_555
A
ZN
54
C
ZN
ZN
1_555
A
HOH
241
I
O
HOH
1_555
172.6
A
A
8
A
OP2
A
8
1_555
A
ZN
54
C
ZN
ZN
1_555
A
HOH
256
I
O
HOH
1_555
165.4
A
G
9
A
N7
G
9
1_555
A
ZN
54
C
ZN
ZN
1_555
A
HOH
256
I
O
HOH
1_555
82.0
A
HOH
137
I
O
HOH
1_555
A
ZN
54
C
ZN
ZN
1_555
A
HOH
256
I
O
HOH
1_555
103.1
A
HOH
156
I
O
HOH
1_555
A
ZN
54
C
ZN
ZN
1_555
A
HOH
256
I
O
HOH
1_555
84.8
A
HOH
241
I
O
HOH
1_555
A
ZN
54
C
ZN
ZN
1_555
A
HOH
256
I
O
HOH
1_555
95.3
A
HOH
168
I
O
HOH
1_555
A
ZN
50
D
ZN
ZN
1_555
A
HOH
319
I
O
HOH
1_555
94.5
A
HOH
168
I
O
HOH
1_555
A
ZN
50
D
ZN
ZN
1_555
A
HOH
386
I
O
HOH
1_555
170.1
A
HOH
319
I
O
HOH
1_555
A
ZN
50
D
ZN
ZN
1_555
A
HOH
386
I
O
HOH
1_555
93.6
A
HOH
168
I
O
HOH
1_555
A
ZN
50
D
ZN
ZN
1_555
A
HOH
387
I
O
HOH
1_555
86.3
A
HOH
319
I
O
HOH
1_555
A
ZN
50
D
ZN
ZN
1_555
A
HOH
387
I
O
HOH
1_555
78.4
A
HOH
386
I
O
HOH
1_555
A
ZN
50
D
ZN
ZN
1_555
A
HOH
387
I
O
HOH
1_555
100.8
A
HOH
168
I
O
HOH
1_555
A
ZN
50
D
ZN
ZN
1_555
A
HOH
388
I
O
HOH
1_555
86.7
A
HOH
319
I
O
HOH
1_555
A
ZN
50
D
ZN
ZN
1_555
A
HOH
388
I
O
HOH
1_555
172.9
A
HOH
386
I
O
HOH
1_555
A
ZN
50
D
ZN
ZN
1_555
A
HOH
388
I
O
HOH
1_555
85.9
A
HOH
387
I
O
HOH
1_555
A
ZN
50
D
ZN
ZN
1_555
A
HOH
388
I
O
HOH
1_555
94.7
A
HOH
389
I
O
HOH
1_555
B
ZN
51
G
ZN
ZN
1_555
B
HOH
330
J
O
HOH
1_555
95.8
A
HOH
389
I
O
HOH
1_555
B
ZN
51
G
ZN
ZN
1_555
B
HOH
376
J
O
HOH
1_555
167.6
B
HOH
330
J
O
HOH
1_555
B
ZN
51
G
ZN
ZN
1_555
B
HOH
376
J
O
HOH
1_555
83.3
A
HOH
389
I
O
HOH
1_555
B
ZN
51
G
ZN
ZN
1_555
B
HOH
384
J
O
HOH
1_555
92.7
B
HOH
330
J
O
HOH
1_555
B
ZN
51
G
ZN
ZN
1_555
B
HOH
384
J
O
HOH
1_555
100.5
B
HOH
376
J
O
HOH
1_555
B
ZN
51
G
ZN
ZN
1_555
B
HOH
384
J
O
HOH
1_555
75.4
A
HOH
389
I
O
HOH
1_555
B
ZN
51
G
ZN
ZN
1_555
B
HOH
385
J
O
HOH
1_555
105.0
B
HOH
330
J
O
HOH
1_555
B
ZN
51
G
ZN
ZN
1_555
B
HOH
385
J
O
HOH
1_555
76.9
B
HOH
376
J
O
HOH
1_555
B
ZN
51
G
ZN
ZN
1_555
B
HOH
385
J
O
HOH
1_555
86.9
B
HOH
384
J
O
HOH
1_555
B
ZN
51
G
ZN
ZN
1_555
B
HOH
385
J
O
HOH
1_555
162.3
A
HOH
389
I
O
HOH
1_555
B
ZN
51
G
ZN
ZN
1_555
B
HOH
390
J
O
HOH
1_555
86.5
B
HOH
330
J
O
HOH
1_555
B
ZN
51
G
ZN
ZN
1_555
B
HOH
390
J
O
HOH
1_555
174.7
B
HOH
376
J
O
HOH
1_555
B
ZN
51
G
ZN
ZN
1_555
B
HOH
390
J
O
HOH
1_555
95.4
B
HOH
384
J
O
HOH
1_555
B
ZN
51
G
ZN
ZN
1_555
B
HOH
390
J
O
HOH
1_555
84.1
B
HOH
385
J
O
HOH
1_555
B
ZN
51
G
ZN
ZN
1_555
B
HOH
390
J
O
HOH
1_555
97.9
B
A
8
A
B
OP2
A
8
1_555
B
ZN
53
E
ZN
ZN
1_555
B
A
8
B
B
OP2
A
8
1_555
16.8
B
A
8
A
B
OP2
A
8
1_555
B
ZN
53
E
ZN
ZN
1_555
B
G
9
A
B
N7
G
9
1_555
91.1
B
A
8
B
B
OP2
A
8
1_555
B
ZN
53
E
ZN
ZN
1_555
B
G
9
A
B
N7
G
9
1_555
101.0
B
A
8
A
B
OP2
A
8
1_555
B
ZN
53
E
ZN
ZN
1_555
B
G
9
B
B
N7
G
9
1_555
74.0
B
A
8
B
B
OP2
A
8
1_555
B
ZN
53
E
ZN
ZN
1_555
B
G
9
B
B
N7
G
9
1_555
87.2
B
G
9
A
B
N7
G
9
1_555
B
ZN
53
E
ZN
ZN
1_555
B
G
9
B
B
N7
G
9
1_555
21.7
B
A
8
A
B
OP2
A
8
1_555
B
ZN
53
E
ZN
ZN
1_555
B
HOH
353
J
O
HOH
1_555
102.3
B
A
8
B
B
OP2
A
8
1_555
B
ZN
53
E
ZN
ZN
1_555
B
HOH
353
J
O
HOH
1_555
90.9
B
G
9
A
B
N7
G
9
1_555
B
ZN
53
E
ZN
ZN
1_555
B
HOH
353
J
O
HOH
1_555
165.7
B
G
9
B
B
N7
G
9
1_555
B
ZN
53
E
ZN
ZN
1_555
B
HOH
353
J
O
HOH
1_555
171.1
B
A
8
A
B
OP2
A
8
1_555
B
ZN
53
E
ZN
ZN
1_555
B
HOH
354
J
O
HOH
1_555
176.7
B
A
8
B
B
OP2
A
8
1_555
B
ZN
53
E
ZN
ZN
1_555
B
HOH
354
J
O
HOH
1_555
166.5
B
G
9
A
B
N7
G
9
1_555
B
ZN
53
E
ZN
ZN
1_555
B
HOH
354
J
O
HOH
1_555
86.9
B
G
9
B
B
N7
G
9
1_555
B
ZN
53
E
ZN
ZN
1_555
B
HOH
354
J
O
HOH
1_555
103.4
B
HOH
353
J
O
HOH
1_555
B
ZN
53
E
ZN
ZN
1_555
B
HOH
354
J
O
HOH
1_555
79.9
B
A
8
A
B
OP2
A
8
1_555
B
ZN
53
E
ZN
ZN
1_555
B
HOH
355
J
O
HOH
1_555
91.7
B
A
8
B
B
OP2
A
8
1_555
B
ZN
53
E
ZN
ZN
1_555
B
HOH
355
J
O
HOH
1_555
103.5
B
G
9
A
B
N7
G
9
1_555
B
ZN
53
E
ZN
ZN
1_555
B
HOH
355
J
O
HOH
1_555
98.0
B
G
9
B
B
N7
G
9
1_555
B
ZN
53
E
ZN
ZN
1_555
B
HOH
355
J
O
HOH
1_555
85.2
B
HOH
353
J
O
HOH
1_555
B
ZN
53
E
ZN
ZN
1_555
B
HOH
355
J
O
HOH
1_555
86.8
B
HOH
354
J
O
HOH
1_555
B
ZN
53
E
ZN
ZN
1_555
B
HOH
355
J
O
HOH
1_555
85.9
B
A
8
A
B
OP2
A
8
1_555
B
ZN
53
E
ZN
ZN
1_555
B
HOH
378
J
O
HOH
1_555
99.3
B
A
8
B
B
OP2
A
8
1_555
B
ZN
53
E
ZN
ZN
1_555
B
HOH
378
J
O
HOH
1_555
86.3
B
G
9
A
B
N7
G
9
1_555
B
ZN
53
E
ZN
ZN
1_555
B
HOH
378
J
O
HOH
1_555
86.6
B
G
9
B
B
N7
G
9
1_555
B
ZN
53
E
ZN
ZN
1_555
B
HOH
378
J
O
HOH
1_555
102.3
B
HOH
353
J
O
HOH
1_555
B
ZN
53
E
ZN
ZN
1_555
B
HOH
378
J
O
HOH
1_555
86.3
B
HOH
354
J
O
HOH
1_555
B
ZN
53
E
ZN
ZN
1_555
B
HOH
378
J
O
HOH
1_555
83.3
B
HOH
355
J
O
HOH
1_555
B
ZN
53
E
ZN
ZN
1_555
B
HOH
378
J
O
HOH
1_555
168.0
B
A
22
B
N7
A
22
1_555
B
ZN
55
F
ZN
ZN
1_555
B
HOH
174
J
O
HOH
1_555
142.8
B
HOH
380
J
O
HOH
1_555
B
ZN
52
H
ZN
ZN
1_555
B
HOH
381
J
O
HOH
1_555
86.3
B
HOH
380
J
O
HOH
1_555
B
ZN
52
H
ZN
ZN
1_555
B
HOH
391
B
J
O
HOH
1_555
87.6
B
HOH
381
J
O
HOH
1_555
B
ZN
52
H
ZN
ZN
1_555
B
HOH
391
B
J
O
HOH
1_555
90.5
B
HOH
380
J
O
HOH
1_555
B
ZN
52
H
ZN
ZN
1_555
B
HOH
392
J
O
HOH
1_555
115.2
B
HOH
381
J
O
HOH
1_555
B
ZN
52
H
ZN
ZN
1_555
B
HOH
392
J
O
HOH
1_555
98.5
B
HOH
391
B
J
O
HOH
1_555
B
ZN
52
H
ZN
ZN
1_555
B
HOH
392
J
O
HOH
1_555
155.9
B
HOH
380
J
O
HOH
1_555
B
ZN
52
H
ZN
ZN
1_555
B
HOH
393
J
O
HOH
1_555
92.4
B
HOH
381
J
O
HOH
1_555
B
ZN
52
H
ZN
ZN
1_555
B
HOH
393
J
O
HOH
1_555
172.0
B
HOH
391
B
J
O
HOH
1_555
B
ZN
52
H
ZN
ZN
1_555
B
HOH
393
J
O
HOH
1_555
97.3
B
HOH
392
J
O
HOH
1_555
B
ZN
52
H
ZN
ZN
1_555
B
HOH
393
J
O
HOH
1_555
74.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
HOH
136
I
HOH
1
A
HOH
203
I
HOH
1
A
HOH
257
I
HOH
1
A
HOH
264
I
HOH
1
B
HOH
148
J
HOH
1
B
HOH
333
J
HOH
1
A
C
1
0.081
SIDE CHAIN
1
B
G
7
A
0.057
SIDE CHAIN
1
B
G
10
0.058
SIDE CHAIN
1
-7.43
0.90
105.70
98.27
B
B
B
O5'
P
OP2
G
G
G
4
4
4
N
1
-9.74
1.20
119.70
109.96
B
B
B
C3'
O3'
P
U
U
G
6
6
7
B
Y
1
-15.04
1.50
119.60
104.56
B
B
B
OP1
P
OP2
G
G
G
9
9
9
A
A
A
N
1
7.89
1.20
110.70
118.59
B
B
B
O5'
P
OP2
G
G
G
9
9
9
A
A
A
N
1
10.15
1.60
113.70
123.85
B
B
B
C2'
C3'
O3'
G
G
G
9
9
9
A
A
A
N
LUC.PARAM
DNA-RNA.TOP
WATER_REP.PARAM
WATER.TOP
ION.PARAM
ION.TOP
34.5
-3.12
0.51
0.00
-3.12
0.00
6.23
0.219
0.006
0.218
0.218
1.85
8.00
1476
21156
19553
7.5
92.4
RANDOM
1639517.06
0.0
1
RESTRAINED
THROUGHOUT
2.0
MAD
FLAT MODEL
56.6762
0.272173
0.26
0.26
10.00
0.23
0.22
1.85
8.00
277
1340
15
1048
0
0.014
1.6
9.1
1.76
0.284
0.020
0.279
1.96
193
2511
6
7.1
77.3
22.7
1.85
15
1NLC
21273
21043
0
0
0.052
1
32.3
4.9
98.9
1.85
1.90
0.188
98.7
refinement
CNS
0.4
data reduction
DENZO
data scaling
SCALEPACK
phasing
SHARP
HIV-1 DIS(Mal) duplex Zn-soaked
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
metalc
2.196
A
A
8
A
OP2
A
8
1_555
A
ZN
54
C
ZN
ZN
1_555
metalc
2.517
A
G
9
A
N7
G
9
1_555
A
ZN
54
C
ZN
ZN
1_555
metalc
2.038
A
ZN
50
D
ZN
ZN
1_555
A
HOH
168
I
O
HOH
1_555
metalc
2.292
A
ZN
50
D
ZN
ZN
1_555
A
HOH
319
I
O
HOH
1_555
metalc
2.001
A
ZN
50
D
ZN
ZN
1_555
A
HOH
386
I
O
HOH
1_555
metalc
2.091
A
ZN
50
D
ZN
ZN
1_555
A
HOH
387
I
O
HOH
1_555
metalc
2.191
A
ZN
50
D
ZN
ZN
1_555
A
HOH
388
I
O
HOH
1_555
metalc
2.237
A
ZN
54
C
ZN
ZN
1_555
A
HOH
137
I
O
HOH
1_555
metalc
2.049
A
ZN
54
C
ZN
ZN
1_555
A
HOH
156
I
O
HOH
1_555
metalc
2.345
A
ZN
54
C
ZN
ZN
1_555
A
HOH
241
I
O
HOH
1_555
metalc
2.442
A
ZN
54
C
ZN
ZN
1_555
A
HOH
256
I
O
HOH
1_555
metalc
2.091
A
HOH
389
I
O
HOH
1_555
B
ZN
51
G
ZN
ZN
1_555
metalc
2.401
A
B
A
8
B
OP2
A
8
1_555
B
ZN
53
E
ZN
ZN
1_555
metalc
2.081
B
B
A
8
B
OP2
A
8
1_555
B
ZN
53
E
ZN
ZN
1_555
metalc
2.205
A
B
G
9
B
N7
G
9
1_555
B
ZN
53
E
ZN
ZN
1_555
metalc
2.166
B
B
G
9
B
N7
G
9
1_555
B
ZN
53
E
ZN
ZN
1_555
metalc
2.520
B
A
22
B
N7
A
22
1_555
B
ZN
55
F
ZN
ZN
1_555
metalc
2.446
B
ZN
51
G
ZN
ZN
1_555
B
HOH
330
J
O
HOH
1_555
metalc
2.325
B
ZN
51
G
ZN
ZN
1_555
B
HOH
376
J
O
HOH
1_555
metalc
2.187
B
ZN
51
G
ZN
ZN
1_555
B
HOH
384
J
O
HOH
1_555
metalc
2.059
B
ZN
51
G
ZN
ZN
1_555
B
HOH
385
J
O
HOH
1_555
metalc
2.170
B
ZN
51
G
ZN
ZN
1_555
B
HOH
390
J
O
HOH
1_555
metalc
2.289
B
ZN
52
H
ZN
ZN
1_555
B
HOH
380
J
O
HOH
1_555
metalc
2.483
B
ZN
52
H
ZN
ZN
1_555
B
HOH
381
J
O
HOH
1_555
metalc
2.141
B
B
ZN
52
H
ZN
ZN
1_555
B
HOH
391
J
O
HOH
1_555
metalc
2.014
B
ZN
52
H
ZN
ZN
1_555
B
HOH
392
J
O
HOH
1_555
metalc
2.183
B
ZN
52
H
ZN
ZN
1_555
B
HOH
393
J
O
HOH
1_555
metalc
2.338
B
ZN
53
E
ZN
ZN
1_555
B
HOH
353
J
O
HOH
1_555
metalc
2.162
B
ZN
53
E
ZN
ZN
1_555
B
HOH
354
J
O
HOH
1_555
metalc
2.209
B
ZN
53
E
ZN
ZN
1_555
B
HOH
355
J
O
HOH
1_555
metalc
2.059
B
ZN
53
E
ZN
ZN
1_555
B
HOH
378
J
O
HOH
1_555
metalc
2.726
B
ZN
55
F
ZN
ZN
1_555
B
HOH
174
J
O
HOH
1_555
hydrog
WATSON-CRICK
A
C
1
A
N3
C
1
1_555
B
G
23
B
N1
G
23
1_555
hydrog
WATSON-CRICK
A
C
1
A
N4
C
1
1_555
B
G
23
B
O6
G
23
1_555
hydrog
WATSON-CRICK
A
C
1
A
O2
C
1
1_555
B
G
23
B
N2
G
23
1_555
hydrog
WATSON-CRICK
A
U
2
A
N3
U
2
1_555
B
A
22
B
N1
A
22
1_555
hydrog
WATSON-CRICK
A
U
2
A
O4
U
2
1_555
B
A
22
B
N6
A
22
1_555
hydrog
WATSON-CRICK
A
U
3
A
N3
U
3
1_555
B
A
21
B
N1
A
21
1_555
hydrog
WATSON-CRICK
A
U
3
A
O4
U
3
1_555
B
A
21
B
N6
A
21
1_555
hydrog
WATSON-CRICK
A
G
4
A
N1
G
4
1_555
B
C
20
B
N3
C
20
1_555
hydrog
WATSON-CRICK
A
G
4
A
N2
G
4
1_555
B
C
20
B
O2
C
20
1_555
hydrog
WATSON-CRICK
A
G
4
A
O6
G
4
1_555
B
C
20
B
N4
C
20
1_555
hydrog
WATSON-CRICK
A
C
5
A
N3
C
5
1_555
B
G
19
B
N1
G
19
1_555
hydrog
WATSON-CRICK
A
C
5
A
N4
C
5
1_555
B
G
19
B
O6
G
19
1_555
hydrog
WATSON-CRICK
A
C
5
A
O2
C
5
1_555
B
G
19
B
N2
G
19
1_555
hydrog
WATSON-CRICK
A
U
6
A
N3
U
6
1_555
B
A
18
B
N1
A
18
1_555
hydrog
WATSON-CRICK
A
U
6
A
O4
U
6
1_555
B
A
18
B
N6
A
18
1_555
hydrog
WATSON-CRICK
A
G
7
A
N1
G
7
1_555
B
C
17
B
N3
C
17
1_555
hydrog
WATSON-CRICK
A
G
7
A
N2
G
7
1_555
B
C
17
B
O2
C
17
1_555
hydrog
WATSON-CRICK
A
G
7
A
O6
G
7
1_555
B
C
17
B
N4
C
17
1_555
hydrog
TYPE_8_PAIR
A
G
9
A
N1
G
9
1_555
B
A
16
B
N1
A
16
1_555
hydrog
TYPE_8_PAIR
A
G
9
A
O6
G
9
1_555
B
A
16
B
N6
A
16
1_555
hydrog
G-C PAIR
A
G
9
A
N2
G
9
1_555
B
C
17
B
O2
C
17
1_555
hydrog
WATSON-CRICK
A
G
10
A
N1
G
10
1_555
B
C
15
B
N3
C
15
1_555
hydrog
WATSON-CRICK
A
G
10
A
N2
G
10
1_555
B
C
15
B
O2
C
15
1_555
hydrog
WATSON-CRICK
A
G
10
A
O6
G
10
1_555
B
C
15
B
N4
C
15
1_555
hydrog
WATSON-CRICK
A
U
11
A
N3
U
11
1_555
B
A
14
B
N1
A
14
1_555
hydrog
WATSON-CRICK
A
U
11
A
O4
U
11
1_555
B
A
14
B
N6
A
14
1_555
hydrog
WATSON-CRICK
A
G
12
A
N1
G
12
1_555
B
C
13
B
N3
C
13
1_555
hydrog
WATSON-CRICK
A
G
12
A
N2
G
12
1_555
B
C
13
B
O2
C
13
1_555
hydrog
WATSON-CRICK
A
G
12
A
O6
G
12
1_555
B
C
13
B
N4
C
13
1_555
hydrog
WATSON-CRICK
A
C
13
A
N3
C
13
1_555
B
G
12
B
N1
G
12
1_555
hydrog
WATSON-CRICK
A
C
13
A
N4
C
13
1_555
B
G
12
B
O6
G
12
1_555
hydrog
WATSON-CRICK
A
C
13
A
O2
C
13
1_555
B
G
12
B
N2
G
12
1_555
hydrog
WATSON-CRICK
A
A
14
A
N1
A
14
1_555
B
U
11
B
N3
U
11
1_555
hydrog
WATSON-CRICK
A
A
14
A
N6
A
14
1_555
B
U
11
B
O4
U
11
1_555
hydrog
WATSON-CRICK
A
C
15
A
N3
C
15
1_555
B
G
10
B
N1
G
10
1_555
hydrog
WATSON-CRICK
A
C
15
A
N4
C
15
1_555
B
G
10
B
O6
G
10
1_555
hydrog
WATSON-CRICK
A
C
15
A
O2
C
15
1_555
B
G
10
B
N2
G
10
1_555
hydrog
TYPE_8_PAIR
A
A
A
16
A
N1
A
16
1_555
B
G
9
B
N1
G
9
1_555
hydrog
TYPE_8_PAIR
A
A
A
16
A
N6
A
16
1_555
B
G
9
B
O6
G
9
1_555
hydrog
WATSON-CRICK
A
A
C
17
A
N3
C
17
1_555
B
G
7
B
N1
G
7
1_555
hydrog
WATSON-CRICK
A
A
C
17
A
N4
C
17
1_555
B
G
7
B
O6
G
7
1_555
hydrog
WATSON-CRICK
A
A
C
17
A
O2
C
17
1_555
B
G
7
B
N2
G
7
1_555
hydrog
WATSON-CRICK
A
A
18
A
N1
A
18
1_555
B
U
6
B
N3
U
6
1_555
hydrog
WATSON-CRICK
A
A
18
A
N6
A
18
1_555
B
U
6
B
O4
U
6
1_555
hydrog
WATSON-CRICK
A
G
19
A
N1
G
19
1_555
B
C
5
B
N3
C
5
1_555
hydrog
WATSON-CRICK
A
G
19
A
N2
G
19
1_555
B
C
5
B
O2
C
5
1_555
hydrog
WATSON-CRICK
A
G
19
A
O6
G
19
1_555
B
C
5
B
N4
C
5
1_555
hydrog
WATSON-CRICK
A
C
20
A
N3
C
20
1_555
B
G
4
B
N1
G
4
1_555
hydrog
WATSON-CRICK
A
C
20
A
N4
C
20
1_555
B
G
4
B
O6
G
4
1_555
hydrog
WATSON-CRICK
A
C
20
A
O2
C
20
1_555
B
G
4
B
N2
G
4
1_555
hydrog
WATSON-CRICK
A
A
21
A
N1
A
21
1_555
B
U
3
B
N3
U
3
1_555
hydrog
WATSON-CRICK
A
A
21
A
N6
A
21
1_555
B
U
3
B
O4
U
3
1_555
hydrog
WATSON-CRICK
A
A
22
A
N1
A
22
1_555
B
U
2
B
N3
U
2
1_555
hydrog
WATSON-CRICK
A
A
22
A
N6
A
22
1_555
B
U
2
B
O4
U
2
1_555
hydrog
WATSON-CRICK
A
G
23
A
N1
G
23
1_555
B
C
1
B
N3
C
1
1_555
hydrog
WATSON-CRICK
A
G
23
A
N2
G
23
1_555
B
C
1
B
O2
C
1
1_555
hydrog
WATSON-CRICK
A
G
23
A
O6
G
23
1_555
B
C
1
B
N4
C
1
1_555
RNA
HIV-1, RNA, Zinc
1NLC
PDB
1
1NLC
1
23
1NLC
1
23
1NLC
A
1
1
23
1
23
1NLC
1
23
1NLC
B
1
1
23
BINDING SITE FOR RESIDUE ZN B 53
B
ZN
53
Software
6
BINDING SITE FOR RESIDUE ZN A 54
A
ZN
54
Software
6
BINDING SITE FOR RESIDUE ZN B 55
B
ZN
55
Software
2
BINDING SITE FOR RESIDUE ZN A 50
A
ZN
50
Software
5
BINDING SITE FOR RESIDUE ZN B 51
B
ZN
51
Software
6
BINDING SITE FOR RESIDUE ZN B 52
B
ZN
52
Software
5
B
A
8
B
A
8
6
1_555
B
G
9
B
G
9
6
1_555
B
HOH
353
J
HOH
6
1_555
B
HOH
354
J
HOH
6
1_555
B
HOH
355
J
HOH
6
1_555
B
HOH
378
J
HOH
6
1_555
A
A
8
A
A
8
6
1_555
A
G
9
A
G
9
6
1_555
A
HOH
137
I
HOH
6
1_555
A
HOH
156
I
HOH
6
1_555
A
HOH
241
I
HOH
6
1_555
A
HOH
256
I
HOH
6
1_555
B
A
22
B
A
22
2
1_555
B
HOH
174
J
HOH
2
1_555
A
HOH
168
I
HOH
5
1_555
A
HOH
319
I
HOH
5
1_555
A
HOH
386
I
HOH
5
1_555
A
HOH
387
I
HOH
5
1_555
A
HOH
388
I
HOH
5
1_555
A
HOH
389
I
HOH
6
1_555
B
HOH
330
J
HOH
6
1_555
B
HOH
376
J
HOH
6
1_555
B
HOH
384
J
HOH
6
1_555
B
HOH
385
J
HOH
6
1_555
B
HOH
390
J
HOH
6
1_555
B
HOH
380
J
HOH
5
1_555
B
HOH
381
J
HOH
5
1_555
B
HOH
391
J
HOH
5
1_555
B
HOH
392
J
HOH
5
1_555
B
HOH
393
J
HOH
5
1_555
152
P 31 2 1