0.026212
0.000000
0.000000
0.000000
0.012114
0.000000
0.000000
0.000000
0.007634
0.00000
0.00000
0.00000
Davies, C.
Beauchamp, J.C.
Emery, D.
Rawas, A.
Muirhead, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
38.150
82.550
131.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
53
186
194
10.1107/S0907444996012048
15299953
Structure of the Fab fragment from a neutralizing monoclonal antibody directed against an epitope of gp41 from HIV-1.
1997
UK
Nature
NATUAS
0006
0028-0836
339
385
An Engineered Poliovirus Chimaera Elicits Broadly Reactive HIV-1 Neutralizing Antibodies
1989
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
AREA DETECTOR
1992
SIEMENS
M
x-ray
1
1.5418
1.0
1.5418
24186.941
FAB1583
1
nat
polymer
22959.670
FAB1583
1
nat
polymer
no
no
DVVMTQTPLTLSVTIGQPASISCKSSQSLLDSDGKTYLNWLLQRPGQSPKRLIYLVSKLDSGVPDRFTGSGSGTDFTLKI
SRVEAEDLGVYYCWQGTHFPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER
QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
DVVMTQTPLTLSVTIGQPASISCKSSQSLLDSDGKTYLNWLLQRPGQSPKRLIYLVSKLDSGVPDRFTGSGSGTDFTLKI
SRVEAEDLGVYYCWQGTHFPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER
QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
L
polypeptide(L)
no
no
QVKLQQSGPGLVQPSQSLSITCTVSGFSLTCYGVHWVRQSPGKGLEWLGVIWSGGDTDYNAAFISRLSITKDNSKSQVFF
KMNSLQPNDRAIYYCARRGGDFWGQGTTVTVSSASTTAPSVYPLAPVSGDQTNSSVTLGCLVKGYFPEPVTLTWNSGSLS
SGVHTFPAVLQSDLYTLSSSVTVTSSPWPSETITCNVAHPASSTKVDKKIEPRGC
QVKLQQSGPGLVQPSQSLSITCTVSGFSLTCYGVHWVRQSPGKGLEWLGVIWSGGDTDYNAAFISRLSITKDNSKSQVFF
KMNSLQPNDRAIYYCARRGGDFWGQGTTVTVSSASTTAPSVYPLAPVSGDQTNSSVTLGCLVKGYFPEPVTLTWNSGSLS
SGVHTFPAVLQSDLYTLSSSVTVTSSPWPSETITCNVAHPASSTKVDKKIEPRGC
H
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
sample
1583 HYBRIDOMA
10090
Mus musculus
house mouse
Mus
sample
1583 HYBRIDOMA
10090
Mus musculus
2.19
46.0
repository
Initial release
Version format compliance
Version format compliance
1
0
1996-12-23
1
1
2008-03-24
1
2
2011-07-13
Y
1996-07-02
REL
REL
ASP
1
n
1
ASP
1
L
VAL
2
n
2
VAL
2
L
VAL
3
n
3
VAL
3
L
MET
4
n
4
MET
4
L
THR
5
n
5
THR
5
L
GLN
6
n
6
GLN
6
L
THR
7
n
7
THR
7
L
PRO
8
n
8
PRO
8
L
LEU
9
n
9
LEU
9
L
THR
10
n
10
THR
10
L
LEU
11
n
11
LEU
11
L
SER
12
n
12
SER
12
L
VAL
13
n
13
VAL
13
L
THR
14
n
14
THR
14
L
ILE
15
n
15
ILE
15
L
GLY
16
n
16
GLY
16
L
GLN
17
n
17
GLN
17
L
PRO
18
n
18
PRO
18
L
ALA
19
n
19
ALA
19
L
SER
20
n
20
SER
20
L
ILE
21
n
21
ILE
21
L
SER
22
n
22
SER
22
L
CYS
23
n
23
CYS
23
L
LYS
24
n
24
LYS
24
L
SER
25
n
25
SER
25
L
SER
26
n
26
SER
26
L
GLN
27
n
27
GLN
27
L
SER
27
n
28
A
SER
27
L
LEU
27
n
29
B
LEU
27
L
LEU
27
n
30
C
LEU
27
L
ASP
27
n
31
D
ASP
27
L
SER
27
n
32
E
SER
27
L
ASP
28
n
33
ASP
28
L
GLY
29
n
34
GLY
29
L
LYS
30
n
35
LYS
30
L
THR
31
n
36
THR
31
L
TYR
32
n
37
TYR
32
L
LEU
33
n
38
LEU
33
L
ASN
34
n
39
ASN
34
L
TRP
35
n
40
TRP
35
L
LEU
36
n
41
LEU
36
L
LEU
37
n
42
LEU
37
L
GLN
38
n
43
GLN
38
L
ARG
39
n
44
ARG
39
L
PRO
40
n
45
PRO
40
L
GLY
41
n
46
GLY
41
L
GLN
42
n
47
GLN
42
L
SER
43
n
48
SER
43
L
PRO
44
n
49
PRO
44
L
LYS
45
n
50
LYS
45
L
ARG
46
n
51
ARG
46
L
LEU
47
n
52
LEU
47
L
ILE
48
n
53
ILE
48
L
TYR
49
n
54
TYR
49
L
LEU
50
n
55
LEU
50
L
VAL
51
n
56
VAL
51
L
SER
52
n
57
SER
52
L
LYS
53
n
58
LYS
53
L
LEU
54
n
59
LEU
54
L
ASP
55
n
60
ASP
55
L
SER
56
n
61
SER
56
L
GLY
57
n
62
GLY
57
L
VAL
58
n
63
VAL
58
L
PRO
59
n
64
PRO
59
L
ASP
60
n
65
ASP
60
L
ARG
61
n
66
ARG
61
L
PHE
62
n
67
PHE
62
L
THR
63
n
68
THR
63
L
GLY
64
n
69
GLY
64
L
SER
65
n
70
SER
65
L
GLY
66
n
71
GLY
66
L
SER
67
n
72
SER
67
L
GLY
68
n
73
GLY
68
L
THR
69
n
74
THR
69
L
ASP
70
n
75
ASP
70
L
PHE
71
n
76
PHE
71
L
THR
72
n
77
THR
72
L
LEU
73
n
78
LEU
73
L
LYS
74
n
79
LYS
74
L
ILE
75
n
80
ILE
75
L
SER
76
n
81
SER
76
L
ARG
77
n
82
ARG
77
L
VAL
78
n
83
VAL
78
L
GLU
79
n
84
GLU
79
L
ALA
80
n
85
ALA
80
L
GLU
81
n
86
GLU
81
L
ASP
82
n
87
ASP
82
L
LEU
83
n
88
LEU
83
L
GLY
84
n
89
GLY
84
L
VAL
85
n
90
VAL
85
L
TYR
86
n
91
TYR
86
L
TYR
87
n
92
TYR
87
L
CYS
88
n
93
CYS
88
L
TRP
89
n
94
TRP
89
L
GLN
90
n
95
GLN
90
L
GLY
91
n
96
GLY
91
L
THR
92
n
97
THR
92
L
HIS
93
n
98
HIS
93
L
PHE
94
n
99
PHE
94
L
PRO
95
n
100
PRO
95
L
ARG
96
n
101
ARG
96
L
THR
97
n
102
THR
97
L
PHE
98
n
103
PHE
98
L
GLY
99
n
104
GLY
99
L
GLY
100
n
105
GLY
100
L
GLY
101
n
106
GLY
101
L
THR
102
n
107
THR
102
L
LYS
103
n
108
LYS
103
L
LEU
104
n
109
LEU
104
L
GLU
105
n
110
GLU
105
L
ILE
106
n
111
ILE
106
L
LYS
107
n
112
LYS
107
L
ARG
108
n
113
ARG
108
L
ALA
109
n
114
ALA
109
L
ASP
110
n
115
ASP
110
L
ALA
111
n
116
ALA
111
L
ALA
112
n
117
ALA
112
L
PRO
113
n
118
PRO
113
L
THR
114
n
119
THR
114
L
VAL
115
n
120
VAL
115
L
SER
116
n
121
SER
116
L
ILE
117
n
122
ILE
117
L
PHE
118
n
123
PHE
118
L
PRO
119
n
124
PRO
119
L
PRO
120
n
125
PRO
120
L
SER
121
n
126
SER
121
L
SER
122
n
127
SER
122
L
GLU
123
n
128
GLU
123
L
GLN
124
n
129
GLN
124
L
LEU
125
n
130
LEU
125
L
THR
126
n
131
THR
126
L
SER
127
n
132
SER
127
L
GLY
128
n
133
GLY
128
L
GLY
129
n
134
GLY
129
L
ALA
130
n
135
ALA
130
L
SER
131
n
136
SER
131
L
VAL
132
n
137
VAL
132
L
VAL
133
n
138
VAL
133
L
CYS
134
n
139
CYS
134
L
PHE
135
n
140
PHE
135
L
LEU
136
n
141
LEU
136
L
ASN
137
n
142
ASN
137
L
ASN
138
n
143
ASN
138
L
PHE
139
n
144
PHE
139
L
TYR
140
n
145
TYR
140
L
PRO
141
n
146
PRO
141
L
LYS
142
n
147
LYS
142
L
ASP
143
n
148
ASP
143
L
ILE
144
n
149
ILE
144
L
ASN
145
n
150
ASN
145
L
VAL
146
n
151
VAL
146
L
LYS
147
n
152
LYS
147
L
TRP
148
n
153
TRP
148
L
LYS
149
n
154
LYS
149
L
ILE
150
n
155
ILE
150
L
ASP
151
n
156
ASP
151
L
GLY
152
n
157
GLY
152
L
SER
153
n
158
SER
153
L
GLU
154
n
159
GLU
154
L
ARG
155
n
160
ARG
155
L
GLN
156
n
161
GLN
156
L
ASN
157
n
162
ASN
157
L
GLY
158
n
163
GLY
158
L
VAL
159
n
164
VAL
159
L
LEU
160
n
165
LEU
160
L
ASN
161
n
166
ASN
161
L
SER
162
n
167
SER
162
L
TRP
163
n
168
TRP
163
L
THR
164
n
169
THR
164
L
ASP
165
n
170
ASP
165
L
GLN
166
n
171
GLN
166
L
ASP
167
n
172
ASP
167
L
SER
168
n
173
SER
168
L
LYS
169
n
174
LYS
169
L
ASP
170
n
175
ASP
170
L
SER
171
n
176
SER
171
L
THR
172
n
177
THR
172
L
TYR
173
n
178
TYR
173
L
SER
174
n
179
SER
174
L
MET
175
n
180
MET
175
L
SER
176
n
181
SER
176
L
SER
177
n
182
SER
177
L
THR
178
n
183
THR
178
L
LEU
179
n
184
LEU
179
L
THR
180
n
185
THR
180
L
LEU
181
n
186
LEU
181
L
THR
182
n
187
THR
182
L
LYS
183
n
188
LYS
183
L
ASP
184
n
189
ASP
184
L
GLU
185
n
190
GLU
185
L
TYR
186
n
191
TYR
186
L
GLU
187
n
192
GLU
187
L
ARG
188
n
193
ARG
188
L
HIS
189
n
194
HIS
189
L
ASN
190
n
195
ASN
190
L
SER
191
n
196
SER
191
L
TYR
192
n
197
TYR
192
L
THR
193
n
198
THR
193
L
CYS
194
n
199
CYS
194
L
GLU
195
n
200
GLU
195
L
ALA
196
n
201
ALA
196
L
THR
197
n
202
THR
197
L
HIS
198
n
203
HIS
198
L
LYS
199
n
204
LYS
199
L
THR
200
n
205
THR
200
L
SER
201
n
206
SER
201
L
THR
202
n
207
THR
202
L
SER
203
n
208
SER
203
L
PRO
204
n
209
PRO
204
L
ILE
205
n
210
ILE
205
L
VAL
206
n
211
VAL
206
L
LYS
207
n
212
LYS
207
L
SER
208
n
213
SER
208
L
PHE
209
n
214
PHE
209
L
ASN
210
n
215
ASN
210
L
ARG
211
n
216
ARG
211
L
ASN
212
n
217
ASN
212
L
GLU
213
n
218
GLU
213
L
CYS
214
n
219
CYS
214
L
GLN
1
n
1
GLN
1
H
VAL
2
n
2
VAL
2
H
LYS
3
n
3
LYS
3
H
LEU
4
n
4
LEU
4
H
GLN
5
n
5
GLN
5
H
GLN
6
n
6
GLN
6
H
SER
7
n
7
SER
7
H
GLY
8
n
8
GLY
8
H
PRO
9
n
9
PRO
9
H
GLY
10
n
10
GLY
10
H
LEU
11
n
11
LEU
11
H
VAL
12
n
12
VAL
12
H
GLN
13
n
13
GLN
13
H
PRO
14
n
14
PRO
14
H
SER
15
n
15
SER
15
H
GLN
16
n
16
GLN
16
H
SER
17
n
17
SER
17
H
LEU
18
n
18
LEU
18
H
SER
19
n
19
SER
19
H
ILE
20
n
20
ILE
20
H
THR
21
n
21
THR
21
H
CYS
22
n
22
CYS
22
H
THR
23
n
23
THR
23
H
VAL
24
n
24
VAL
24
H
SER
25
n
25
SER
25
H
GLY
26
n
26
GLY
26
H
PHE
27
n
27
PHE
27
H
SER
28
n
28
SER
28
H
LEU
29
n
29
LEU
29
H
THR
30
n
30
THR
30
H
CYS
31
n
31
CYS
31
H
TYR
32
n
32
TYR
32
H
GLY
33
n
33
GLY
33
H
VAL
34
n
34
VAL
34
H
HIS
35
n
35
HIS
35
H
TRP
36
n
36
TRP
36
H
VAL
37
n
37
VAL
37
H
ARG
38
n
38
ARG
38
H
GLN
39
n
39
GLN
39
H
SER
40
n
40
SER
40
H
PRO
41
n
41
PRO
41
H
GLY
42
n
42
GLY
42
H
LYS
43
n
43
LYS
43
H
GLY
44
n
44
GLY
44
H
LEU
45
n
45
LEU
45
H
GLU
46
n
46
GLU
46
H
TRP
47
n
47
TRP
47
H
LEU
48
n
48
LEU
48
H
GLY
49
n
49
GLY
49
H
VAL
50
n
50
VAL
50
H
ILE
51
n
51
ILE
51
H
TRP
52
n
52
TRP
52
H
SER
53
n
53
SER
53
H
GLY
54
n
54
GLY
54
H
GLY
55
n
55
GLY
55
H
ASP
56
n
56
ASP
56
H
THR
57
n
57
THR
57
H
ASP
58
n
58
ASP
58
H
TYR
59
n
59
TYR
59
H
ASN
60
n
60
ASN
60
H
ALA
61
n
61
ALA
61
H
ALA
62
n
62
ALA
62
H
PHE
63
n
63
PHE
63
H
ILE
64
n
64
ILE
64
H
SER
65
n
65
SER
65
H
ARG
66
n
66
ARG
66
H
LEU
67
n
67
LEU
67
H
SER
68
n
68
SER
68
H
ILE
69
n
69
ILE
69
H
THR
70
n
70
THR
70
H
LYS
71
n
71
LYS
71
H
ASP
72
n
72
ASP
72
H
ASN
73
n
73
ASN
73
H
SER
74
n
74
SER
74
H
LYS
75
n
75
LYS
75
H
SER
76
n
76
SER
76
H
GLN
77
n
77
GLN
77
H
VAL
78
n
78
VAL
78
H
PHE
79
n
79
PHE
79
H
PHE
80
n
80
PHE
80
H
LYS
81
n
81
LYS
81
H
MET
82
n
82
MET
82
H
ASN
82
n
83
A
ASN
82
H
SER
82
n
84
B
SER
82
H
LEU
82
n
85
C
LEU
82
H
GLN
83
n
86
GLN
83
H
PRO
84
n
87
PRO
84
H
ASN
85
n
88
ASN
85
H
ASP
86
n
89
ASP
86
H
ARG
87
n
90
ARG
87
H
ALA
88
n
91
ALA
88
H
ILE
89
n
92
ILE
89
H
TYR
90
n
93
TYR
90
H
TYR
91
n
94
TYR
91
H
CYS
92
n
95
CYS
92
H
ALA
93
n
96
ALA
93
H
ARG
94
n
97
ARG
94
H
ARG
95
n
98
ARG
95
H
GLY
96
n
99
GLY
96
H
GLY
97
n
100
GLY
97
H
ASP
101
n
101
ASP
101
H
PHE
102
n
102
PHE
102
H
TRP
103
n
103
TRP
103
H
GLY
104
n
104
GLY
104
H
GLN
105
n
105
GLN
105
H
GLY
106
n
106
GLY
106
H
THR
107
n
107
THR
107
H
THR
108
n
108
THR
108
H
VAL
109
n
109
VAL
109
H
THR
110
n
110
THR
110
H
VAL
111
n
111
VAL
111
H
SER
112
n
112
SER
112
H
SER
113
n
113
SER
113
H
ALA
114
n
114
ALA
114
H
SER
115
n
115
SER
115
H
THR
116
n
116
THR
116
H
THR
117
n
117
THR
117
H
ALA
118
n
118
ALA
118
H
PRO
119
n
119
PRO
119
H
SER
120
n
120
SER
120
H
VAL
121
n
121
VAL
121
H
TYR
122
n
122
TYR
122
H
PRO
123
n
123
PRO
123
H
LEU
124
n
124
LEU
124
H
ALA
125
n
125
ALA
125
H
PRO
126
n
126
PRO
126
H
VAL
127
n
127
VAL
127
H
SER
128
n
128
SER
128
H
GLY
129
n
129
GLY
129
H
ASP
130
n
130
ASP
130
H
GLN
131
n
131
GLN
131
H
THR
132
n
132
THR
132
H
ASN
133
n
133
ASN
133
H
SER
134
n
134
SER
134
H
SER
135
n
135
SER
135
H
VAL
136
n
136
VAL
136
H
THR
137
n
137
THR
137
H
LEU
138
n
138
LEU
138
H
GLY
139
n
139
GLY
139
H
CYS
140
n
140
CYS
140
H
LEU
141
n
141
LEU
141
H
VAL
142
n
142
VAL
142
H
LYS
143
n
143
LYS
143
H
GLY
144
n
144
GLY
144
H
TYR
145
n
145
TYR
145
H
PHE
146
n
146
PHE
146
H
PRO
147
n
147
PRO
147
H
GLU
148
n
148
GLU
148
H
PRO
149
n
149
PRO
149
H
VAL
150
n
150
VAL
150
H
THR
151
n
151
THR
151
H
LEU
152
n
152
LEU
152
H
THR
153
n
153
THR
153
H
TRP
154
n
154
TRP
154
H
ASN
155
n
155
ASN
155
H
SER
156
n
156
SER
156
H
GLY
157
n
157
GLY
157
H
SER
158
n
158
SER
158
H
LEU
159
n
159
LEU
159
H
SER
160
n
160
SER
160
H
SER
161
n
161
SER
161
H
GLY
162
n
162
GLY
162
H
VAL
163
n
163
VAL
163
H
HIS
164
n
164
HIS
164
H
THR
165
n
165
THR
165
H
PHE
166
n
166
PHE
166
H
PRO
167
n
167
PRO
167
H
ALA
168
n
168
ALA
168
H
VAL
169
n
169
VAL
169
H
LEU
170
n
170
LEU
170
H
GLN
171
n
171
GLN
171
H
SER
172
n
172
SER
172
H
ASP
173
n
173
ASP
173
H
LEU
174
n
174
LEU
174
H
TYR
175
n
175
TYR
175
H
THR
176
n
176
THR
176
H
LEU
177
n
177
LEU
177
H
SER
178
n
178
SER
178
H
SER
179
n
179
SER
179
H
SER
180
n
180
SER
180
H
VAL
181
n
181
VAL
181
H
THR
182
n
182
THR
182
H
VAL
183
n
183
VAL
183
H
THR
184
n
184
THR
184
H
SER
185
n
185
SER
185
H
SER
186
n
186
SER
186
H
PRO
187
n
187
PRO
187
H
TRP
188
n
188
TRP
188
H
PRO
189
n
189
PRO
189
H
SER
190
n
190
SER
190
H
GLU
191
n
191
GLU
191
H
THR
192
n
192
THR
192
H
ILE
193
n
193
ILE
193
H
THR
194
n
194
THR
194
H
CYS
195
n
195
CYS
195
H
ASN
196
n
196
ASN
196
H
VAL
197
n
197
VAL
197
H
ALA
198
n
198
ALA
198
H
HIS
199
n
199
HIS
199
H
PRO
200
n
200
PRO
200
H
ALA
201
n
201
ALA
201
H
SER
202
n
202
SER
202
H
SER
203
n
203
SER
203
H
THR
204
n
204
THR
204
H
LYS
205
n
205
LYS
205
H
VAL
206
n
206
VAL
206
H
ASP
207
n
207
ASP
207
H
LYS
208
n
208
LYS
208
H
LYS
209
n
209
LYS
209
H
ILE
210
n
210
ILE
210
H
GLU
211
n
211
GLU
211
H
PRO
212
n
212
PRO
212
H
ARG
213
n
213
ARG
213
H
GLY
214
n
214
GLY
214
H
CYS
215
n
215
CYS
215
H
author_and_software_defined_assembly
PISA
2
dimeric
3390
-21
18580
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
L
O
THR
5
A
O
THR
5
L
N
LYS
24
A
N
LYS
24
L
O
ALA
19
A
O
ALA
19
L
N
ILE
75
A
N
ILE
80
L
O
ASP
70
A
O
ASP
75
L
N
SER
67
A
N
SER
72
L
O
LEU
11
A
O
LEU
11
L
N
LYS
103
A
N
LYS
108
L
O
THR
102
A
O
THR
107
L
N
TYR
86
A
N
TYR
91
L
O
VAL
85
A
O
VAL
90
L
N
GLN
38
A
N
GLN
43
L
O
TRP
35
A
O
TRP
40
L
N
ILE
48
A
N
ILE
53
L
O
THR
114
A
O
THR
119
L
N
ASN
137
A
N
ASN
142
L
O
ALA
130
A
O
ALA
135
L
N
LEU
181
A
N
LEU
186
L
O
SER
176
A
O
SER
181
L
N
SER
162
A
N
SER
167
L
O
SER
153
A
O
SER
158
L
N
ILE
150
A
N
ILE
155
L
O
ASN
145
A
O
ASN
150
L
N
THR
197
A
N
THR
202
L
O
TYR
192
A
O
TYR
197
L
N
PHE
209
A
N
PHE
214
H
O
GLN
5
B
O
GLN
5
H
N
THR
23
B
N
THR
23
H
O
LEU
18
B
O
LEU
18
H
N
MET
82
B
N
MET
82
H
O
GLN
77
B
O
GLN
77
H
N
ASP
72
B
N
ASP
72
H
O
THR
107
B
O
THR
107
H
N
TYR
90
B
N
TYR
93
H
O
ILE
89
B
O
ILE
92
H
N
GLN
39
B
N
GLN
39
H
O
VAL
34
B
O
VAL
34
H
N
ILE
51
B
N
ILE
51
H
O
VAL
50
B
O
VAL
50
H
N
ASP
58
B
N
ASP
58
H
O
SER
120
B
O
SER
120
H
N
LYS
143
B
N
LYS
143
H
O
VAL
136
B
O
VAL
136
H
N
VAL
183
B
N
VAL
183
H
O
SER
178
B
O
SER
178
H
N
PHE
166
B
N
PHE
166
H
O
THR
151
B
O
THR
151
H
N
ALA
198
B
N
ALA
198
H
O
CYS
195
B
O
CYS
195
H
N
LYS
208
B
N
LYS
208
1
16.97
2.70
111.00
127.97
L
L
L
N
CA
C
PHE
PHE
PHE
94
94
94
N
1
L
LEU
11
-161.96
109.42
1
L
VAL
51
60.87
-33.70
1
L
ASP
60
-72.77
22.23
1
L
SER
67
-170.14
137.45
1
L
PRO
95
-62.02
6.25
1
L
ARG
96
32.49
57.03
1
L
LEU
136
-104.85
78.88
1
L
ASN
138
80.50
17.36
1
L
TYR
140
-79.66
-73.03
1
L
ASP
165
82.79
136.89
1
L
GLN
166
-35.57
123.81
1
L
ASP
170
69.01
-5.63
1
L
SER
171
30.88
31.24
1
L
LEU
181
-122.59
-169.65
1
L
TYR
186
-77.19
-70.71
1
L
GLU
187
-66.49
10.87
1
L
ASN
190
-128.01
-56.42
1
H
SER
15
85.06
-37.57
1
H
LYS
43
-55.73
-85.86
1
H
ALA
88
-172.42
-174.87
1
H
ASP
101
-53.91
105.36
1
H
SER
113
-100.00
63.96
1
H
SER
115
-38.72
173.35
1
H
THR
117
-18.78
125.70
1
H
ASN
133
-68.53
38.40
1
H
SER
134
-85.93
-89.34
1
H
PHE
146
-105.83
-81.97
1
H
PRO
147
-49.85
108.83
1
H
GLU
148
-39.47
-38.42
1
H
GLN
171
-116.13
-104.86
1
H
ALA
198
-167.03
113.39
1
H
ALA
201
168.06
-37.41
16.6
0.326
0.198
0.198
2.9
8.0
8042
1
0.0
2.9
8.0
0
3312
0
0
3312
0.008
1.8
1.5
2.0
2.0
2.5
1NLD
8958
0.0
0.1016
1
3.1
91.6
data collection
XENGEN
model building
X-PLOR
refinement
X-PLOR
data reduction
XENGEN
phasing
X-PLOR
FAB1583
FAB FRAGMENT OF A NEUTRALIZING ANTIBODY DIRECTED AGAINST AN EPITOPE OF GP41 FROM HIV-1
1
N
N
2
N
N
L
ALA
80
A
ALA
85
HELX_P
L
ASP
82
A
ASP
87
5
1
3
L
SER
122
A
SER
127
HELX_P
L
LEU
125
A
LEU
130
1
2
4
L
LYS
183
A
LYS
188
HELX_P
L
GLU
187
A
GLU
192
1
3
5
H
ALA
61
B
ALA
61
HELX_P
H
ARG
66
B
ARG
66
1
4
6
H
PRO
84
B
PRO
87
HELX_P
H
ASP
86
B
ASP
89
5
5
3
H
SER
185
B
SER
185
HELX_P
H
SER
190
B
SER
190
1
6
6
disulf
2.034
L
CYS
23
A
SG
CYS
23
1_555
L
CYS
88
A
SG
CYS
93
1_555
disulf
2.025
L
CYS
134
A
SG
CYS
139
1_555
L
CYS
194
A
SG
CYS
199
1_555
disulf
2.017
H
CYS
22
B
SG
CYS
22
1_555
H
CYS
92
B
SG
CYS
95
1_555
disulf
2.034
H
CYS
140
B
SG
CYS
140
1_555
H
CYS
195
B
SG
CYS
195
1_555
IMMUNOGLOBULIN
FAB FRAGMENT, IMMUNOGLOBULIN
PC4203
PIR
1
1
PC4203
DVLMTQTPLSLPVSLGDQASISCRSSQSIVHTNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI
SRVEAEDLGVYYCFQGSHVPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER
QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
1NLD
PDB
2
1NLD
1
219
1NLD
1
214
PC4203
L
1
1
219
1
215
1NLD
1
215
1NLD
H
2
1
215
1
LEU
CONFLICT
VAL
3
1NLD
L
PC4203
PIR
3
3
1
SER
CONFLICT
THR
10
1NLD
L
PC4203
PIR
10
10
1
PRO
CONFLICT
SER
12
1NLD
L
PC4203
PIR
12
12
1
SER
CONFLICT
THR
14
1NLD
L
PC4203
PIR
14
14
1
LEU
CONFLICT
ILE
15
1NLD
L
PC4203
PIR
15
15
1
ASP
CONFLICT
GLN
17
1NLD
L
PC4203
PIR
17
17
1
GLN
CONFLICT
PRO
18
1NLD
L
PC4203
PIR
18
18
1
ARG
CONFLICT
LYS
24
1NLD
L
PC4203
PIR
24
24
1
ILE
CONFLICT
LEU
27
1NLD
B
L
PC4203
PIR
29
29
1
VAL
CONFLICT
LEU
27
1NLD
C
L
PC4203
PIR
30
30
1
HIS
CONFLICT
ASP
27
1NLD
D
L
PC4203
PIR
31
31
1
THR
CONFLICT
SER
27
1NLD
E
L
PC4203
PIR
32
32
1
ASN
CONFLICT
ASP
28
1NLD
L
PC4203
PIR
33
33
1
ASN
CONFLICT
LYS
30
1NLD
L
PC4203
PIR
35
35
1
GLU
CONFLICT
ASN
34
1NLD
L
PC4203
PIR
39
39
1
TYR
CONFLICT
LEU
36
1NLD
L
PC4203
PIR
41
41
1
LYS
CONFLICT
ARG
39
1NLD
L
PC4203
PIR
44
44
1
LEU
CONFLICT
ARG
46
1NLD
L
PC4203
PIR
51
51
1
LYS
CONFLICT
LEU
50
1NLD
L
PC4203
PIR
55
55
1
ASN
CONFLICT
LYS
53
1NLD
L
PC4203
PIR
58
58
1
ARG
CONFLICT
LEU
54
1NLD
L
PC4203
PIR
59
59
1
PHE
CONFLICT
ASP
55
1NLD
L
PC4203
PIR
60
60
1
SER
CONFLICT
THR
63
1NLD
L
PC4203
PIR
68
68
1
PHE
CONFLICT
TRP
89
1NLD
L
PC4203
PIR
94
94
1
SER
CONFLICT
THR
92
1NLD
L
PC4203
PIR
97
97
1
VAL
CONFLICT
PHE
94
1NLD
L
PC4203
PIR
99
99
4
5
4
4
4
5
4
3
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
L
MET
4
A
MET
4
L
GLN
6
A
GLN
6
L
ALA
19
A
ALA
19
L
SER
25
A
SER
25
L
ASP
70
A
ASP
75
L
ILE
75
A
ILE
80
L
PHE
62
A
PHE
67
L
SER
67
A
SER
72
L
THR
10
A
THR
10
L
THR
14
A
THR
14
L
THR
102
A
THR
107
L
LYS
107
A
LYS
112
L
GLY
84
A
GLY
89
L
GLN
90
A
GLN
95
L
LEU
33
A
LEU
38
L
GLN
38
A
GLN
43
L
LYS
45
A
LYS
50
L
ILE
48
A
ILE
53
L
THR
114
A
THR
119
L
PHE
118
A
PHE
123
L
GLY
129
A
GLY
134
L
ASN
137
A
ASN
142
L
MET
175
A
MET
180
L
THR
182
A
THR
187
L
VAL
159
A
VAL
164
L
TRP
163
A
TRP
168
L
SER
153
A
SER
158
L
ARG
155
A
ARG
160
L
ASN
145
A
ASN
150
L
ILE
150
A
ILE
155
L
SER
191
A
SER
196
L
THR
197
A
THR
202
L
ILE
205
A
ILE
210
L
ASN
210
A
ASN
215
H
GLN
5
B
GLN
5
H
GLY
8
B
GLY
8
H
LEU
18
B
LEU
18
H
THR
23
B
THR
23
H
GLN
77
B
GLN
77
H
MET
82
B
MET
82
H
LEU
67
B
LEU
67
H
ASP
72
B
ASP
72
H
THR
107
B
THR
107
H
VAL
109
B
VAL
109
H
ALA
88
B
ALA
91
H
ARG
94
B
ARG
97
H
VAL
34
B
VAL
34
H
SER
40
B
SER
40
H
GLY
44
B
GLY
44
H
ILE
51
B
ILE
51
H
THR
57
B
THR
57
H
TYR
59
B
TYR
59
H
SER
120
B
SER
120
H
LEU
124
B
LEU
124
H
SER
135
B
SER
135
H
LYS
143
B
LYS
143
H
LEU
177
B
LEU
177
H
THR
184
B
THR
184
H
VAL
163
B
VAL
163
H
PHE
166
B
PHE
166
H
THR
151
B
THR
151
H
TRP
154
B
TRP
154
H
THR
194
B
THR
194
H
HIS
199
B
HIS
199
H
THR
204
B
THR
204
H
LYS
209
B
LYS
209
19
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