0.018174
0.010493
0.000000
0.000000
0.020985
0.000000
0.000000
0.000000
0.006178
0.00000
0.00000
0.00000
Li, J.
Sha, B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90
90
120
55.025
55.025
161.870
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
UK
Structure
STRUE6
2005
0969-2126
11
1475
1483
10.1016/j.str.2003.10.012
14656432
The crystal structure of the yeast Hsp40 Ydj1 complexed with its peptide substrate.
2003
10.2210/pdb1nlt/pdb
pdb_00001nlt
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
1
CCD
2002-07-20
ADSC QUANTUM 4
CCD
2002-08-30
ADSC QUANTUM 4
sagitally focused Si
MAD
M
x-ray
1
MAD
M
x-ray
1
1.2828
1.0
1.2894
1.0
1.244
1.0
1.3237
1.0
F2
CHESS
1.2828,1.2894, 1.244, 1.3237
SYNCHROTRON
CHESS BEAMLINE F2
14-BM-D
APS
1.2828,1.2894, 1.244, 1.3237
SYNCHROTRON
APS BEAMLINE 14-BM-D
27388.627
Mitochondrial protein import protein MAS5
C terminal domain
no
1
man
polymer
866.958
Seven residue peptide
1
syn
polymer
65.409
ZINC ION
2
syn
non-polymer
18.015
water
147
nat
water
Protein YDJ1
no
no
GAQRPRGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQ
TECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRD
GDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTS
EENLKKLE
GAQRPRGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQ
TECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRD
GDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTS
EENLKKLE
A
polypeptide(L)
no
no
GWLYEIS
GWLYEIS
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
baker's yeast
Saccharomyces
Escherichia
Escherichia coli
sample
MAS5 OR YDJ1 OR YNL064C OR N2418 OR YNL2418C
4932
Saccharomyces cerevisiae
469008
Escherichia coli BL21(DE3)
BL21(DE3)
pET28b
pET28b
2
2.57
51.82
VAPOR DIFFUSION, HANGING DROP
7.0
PEG 4K, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 300K
300
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
2004-01-13
1
1
2007-10-16
1
2
2011-07-13
1
3
2021-10-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2003-01-07
REL
REL
ZN
ZINC ION
HOH
water
Chemically synthesized
sample
ZN2
350
3
ZN
ZN
351
A
ZN2
351
3
ZN
ZN
352
A
TIP
1
4
HOH
HOH
353
A
TIP
2
4
HOH
HOH
354
A
TIP
3
4
HOH
HOH
355
A
TIP
4
4
HOH
HOH
356
A
TIP
5
4
HOH
HOH
357
A
TIP
6
4
HOH
HOH
358
A
TIP
7
4
HOH
HOH
359
A
TIP
8
4
HOH
HOH
360
A
TIP
9
4
HOH
HOH
361
A
TIP
10
4
HOH
HOH
362
A
TIP
11
4
HOH
HOH
363
A
TIP
12
4
HOH
HOH
364
A
TIP
13
4
HOH
HOH
365
A
TIP
14
4
HOH
HOH
366
A
TIP
15
4
HOH
HOH
367
A
TIP
16
4
HOH
HOH
368
A
TIP
17
4
HOH
HOH
369
A
TIP
18
4
HOH
HOH
370
A
TIP
19
4
HOH
HOH
371
A
TIP
20
4
HOH
HOH
372
A
TIP
21
4
HOH
HOH
373
A
TIP
22
4
HOH
HOH
374
A
TIP
23
4
HOH
HOH
375
A
TIP
24
4
HOH
HOH
376
A
TIP
25
4
HOH
HOH
377
A
TIP
26
4
HOH
HOH
378
A
TIP
27
4
HOH
HOH
379
A
TIP
28
4
HOH
HOH
380
A
TIP
29
4
HOH
HOH
381
A
TIP
30
4
HOH
HOH
382
A
TIP
31
4
HOH
HOH
383
A
TIP
32
4
HOH
HOH
384
A
TIP
33
4
HOH
HOH
385
A
TIP
34
4
HOH
HOH
386
A
TIP
35
4
HOH
HOH
387
A
TIP
36
4
HOH
HOH
388
A
TIP
37
4
HOH
HOH
389
A
TIP
38
4
HOH
HOH
390
A
TIP
39
4
HOH
HOH
391
A
TIP
40
4
HOH
HOH
392
A
TIP
41
4
HOH
HOH
393
A
TIP
42
4
HOH
HOH
394
A
TIP
44
4
HOH
HOH
395
A
TIP
46
4
HOH
HOH
396
A
TIP
47
4
HOH
HOH
397
A
TIP
48
4
HOH
HOH
398
A
TIP
49
4
HOH
HOH
399
A
TIP
50
4
HOH
HOH
400
A
TIP
51
4
HOH
HOH
401
A
TIP
52
4
HOH
HOH
402
A
TIP
53
4
HOH
HOH
403
A
TIP
54
4
HOH
HOH
404
A
TIP
55
4
HOH
HOH
405
A
TIP
56
4
HOH
HOH
406
A
TIP
57
4
HOH
HOH
407
A
TIP
58
4
HOH
HOH
408
A
TIP
59
4
HOH
HOH
409
A
TIP
60
4
HOH
HOH
410
A
TIP
61
4
HOH
HOH
411
A
TIP
62
4
HOH
HOH
412
A
TIP
63
4
HOH
HOH
413
A
TIP
64
4
HOH
HOH
414
A
TIP
65
4
HOH
HOH
415
A
TIP
66
4
HOH
HOH
416
A
TIP
67
4
HOH
HOH
417
A
TIP
68
4
HOH
HOH
418
A
TIP
70
4
HOH
HOH
419
A
TIP
71
4
HOH
HOH
420
A
TIP
72
4
HOH
HOH
421
A
TIP
73
4
HOH
HOH
422
A
TIP
74
4
HOH
HOH
423
A
TIP
75
4
HOH
HOH
424
A
TIP
76
4
HOH
HOH
425
A
TIP
77
4
HOH
HOH
426
A
TIP
78
4
HOH
HOH
427
A
TIP
79
4
HOH
HOH
428
A
TIP
80
4
HOH
HOH
429
A
TIP
81
4
HOH
HOH
430
A
TIP
82
4
HOH
HOH
431
A
TIP
83
4
HOH
HOH
432
A
TIP
84
4
HOH
HOH
433
A
TIP
85
4
HOH
HOH
434
A
TIP
86
4
HOH
HOH
435
A
TIP
87
4
HOH
HOH
436
A
TIP
88
4
HOH
HOH
437
A
TIP
89
4
HOH
HOH
438
A
TIP
90
4
HOH
HOH
439
A
TIP
91
4
HOH
HOH
440
A
TIP
92
4
HOH
HOH
441
A
TIP
93
4
HOH
HOH
442
A
TIP
94
4
HOH
HOH
443
A
TIP
95
4
HOH
HOH
444
A
TIP
96
4
HOH
HOH
445
A
TIP
97
4
HOH
HOH
446
A
TIP
98
4
HOH
HOH
447
A
TIP
99
4
HOH
HOH
448
A
TIP
100
4
HOH
HOH
449
A
TIP
102
4
HOH
HOH
450
A
TIP
103
4
HOH
HOH
451
A
TIP
104
4
HOH
HOH
452
A
TIP
105
4
HOH
HOH
453
A
TIP
106
4
HOH
HOH
454
A
TIP
107
4
HOH
HOH
455
A
TIP
108
4
HOH
HOH
456
A
TIP
109
4
HOH
HOH
457
A
TIP
110
4
HOH
HOH
458
A
TIP
112
4
HOH
HOH
459
A
TIP
113
4
HOH
HOH
460
A
TIP
114
4
HOH
HOH
461
A
TIP
115
4
HOH
HOH
462
A
TIP
116
4
HOH
HOH
463
A
TIP
117
4
HOH
HOH
464
A
TIP
118
4
HOH
HOH
465
A
TIP
119
4
HOH
HOH
466
A
TIP
120
4
HOH
HOH
467
A
TIP
121
4
HOH
HOH
468
A
TIP
122
4
HOH
HOH
469
A
TIP
123
4
HOH
HOH
470
A
TIP
124
4
HOH
HOH
471
A
TIP
125
4
HOH
HOH
472
A
TIP
126
4
HOH
HOH
473
A
TIP
127
4
HOH
HOH
474
A
TIP
128
4
HOH
HOH
475
A
TIP
129
4
HOH
HOH
476
A
TIP
130
4
HOH
HOH
477
A
TIP
131
4
HOH
HOH
478
A
TIP
132
4
HOH
HOH
479
A
TIP
133
4
HOH
HOH
480
A
TIP
134
4
HOH
HOH
481
A
TIP
135
4
HOH
HOH
482
A
TIP
136
4
HOH
HOH
483
A
TIP
137
4
HOH
HOH
484
A
TIP
138
4
HOH
HOH
485
A
TIP
139
4
HOH
HOH
486
A
TIP
140
4
HOH
HOH
487
A
TIP
141
4
HOH
HOH
488
A
TIP
142
4
HOH
HOH
489
A
TIP
143
4
HOH
HOH
490
A
TIP
144
4
HOH
HOH
491
A
TIP
145
4
HOH
HOH
492
A
TIP
146
4
HOH
HOH
493
A
TIP
147
4
HOH
HOH
494
A
TIP
43
4
HOH
HOH
43
B
TIP
45
4
HOH
HOH
45
B
TIP
69
4
HOH
HOH
69
B
TIP
101
4
HOH
HOH
101
B
TIP
111
4
HOH
HOH
111
B
n
1
103
A
n
2
104
A
n
3
105
A
n
4
106
A
n
5
107
A
n
6
108
A
n
7
109
A
PRO
110
n
8
PRO
110
A
GLN
111
n
9
GLN
111
A
ARG
112
n
10
ARG
112
A
GLY
113
n
11
GLY
113
A
LYS
114
n
12
LYS
114
A
ASP
115
n
13
ASP
115
A
ILE
116
n
14
ILE
116
A
LYS
117
n
15
LYS
117
A
HIS
118
n
16
HIS
118
A
GLU
119
n
17
GLU
119
A
ILE
120
n
18
ILE
120
A
SER
121
n
19
SER
121
A
ALA
122
n
20
ALA
122
A
SER
123
n
21
SER
123
A
LEU
124
n
22
LEU
124
A
GLU
125
n
23
GLU
125
A
GLU
126
n
24
GLU
126
A
LEU
127
n
25
LEU
127
A
TYR
128
n
26
TYR
128
A
LYS
129
n
27
LYS
129
A
GLY
130
n
28
GLY
130
A
ARG
131
n
29
ARG
131
A
THR
132
n
30
THR
132
A
ALA
133
n
31
ALA
133
A
LYS
134
n
32
LYS
134
A
LEU
135
n
33
LEU
135
A
ALA
136
n
34
ALA
136
A
LEU
137
n
35
LEU
137
A
ASN
138
n
36
ASN
138
A
LYS
139
n
37
LYS
139
A
GLN
140
n
38
GLN
140
A
ILE
141
n
39
ILE
141
A
LEU
142
n
40
LEU
142
A
CYS
143
n
41
CYS
143
A
LYS
144
n
42
LYS
144
A
GLU
145
n
43
GLU
145
A
CYS
146
n
44
CYS
146
A
GLU
147
n
45
GLU
147
A
GLY
148
n
46
GLY
148
A
ARG
149
n
47
ARG
149
A
GLY
150
n
48
GLY
150
A
GLY
151
n
49
GLY
151
A
LYS
152
n
50
LYS
152
A
LYS
153
n
51
LYS
153
A
GLY
154
n
52
GLY
154
A
ALA
155
n
53
ALA
155
A
VAL
156
n
54
VAL
156
A
LYS
157
n
55
LYS
157
A
LYS
158
n
56
LYS
158
A
CYS
159
n
57
CYS
159
A
THR
160
n
58
THR
160
A
SER
161
n
59
SER
161
A
CYS
162
n
60
CYS
162
A
ASN
163
n
61
ASN
163
A
GLY
164
n
62
GLY
164
A
GLN
165
n
63
GLN
165
A
GLY
166
n
64
GLY
166
A
ILE
167
n
65
ILE
167
A
LYS
168
n
66
LYS
168
A
PHE
169
n
67
PHE
169
A
VAL
170
n
68
VAL
170
A
THR
171
n
69
THR
171
A
ARG
172
n
70
ARG
172
A
GLN
173
n
71
GLN
173
A
MET
174
n
72
MET
174
A
GLY
175
n
73
GLY
175
A
PRO
176
n
74
PRO
176
A
MET
177
n
75
MET
177
A
ILE
178
n
76
ILE
178
A
GLN
179
n
77
GLN
179
A
ARG
180
n
78
ARG
180
A
PHE
181
n
79
PHE
181
A
GLN
182
n
80
GLN
182
A
THR
183
n
81
THR
183
A
GLU
184
n
82
GLU
184
A
CYS
185
n
83
CYS
185
A
ASP
186
n
84
ASP
186
A
VAL
187
n
85
VAL
187
A
CYS
188
n
86
CYS
188
A
HIS
189
n
87
HIS
189
A
GLY
190
n
88
GLY
190
A
THR
191
n
89
THR
191
A
GLY
192
n
90
GLY
192
A
ASP
193
n
91
ASP
193
A
ILE
194
n
92
ILE
194
A
ILE
195
n
93
ILE
195
A
ASP
196
n
94
ASP
196
A
PRO
197
n
95
PRO
197
A
LYS
198
n
96
LYS
198
A
ASP
199
n
97
ASP
199
A
ARG
200
n
98
ARG
200
A
CYS
201
n
99
CYS
201
A
LYS
202
n
100
LYS
202
A
SER
203
n
101
SER
203
A
CYS
204
n
102
CYS
204
A
ASN
205
n
103
ASN
205
A
GLY
206
n
104
GLY
206
A
LYS
207
n
105
LYS
207
A
LYS
208
n
106
LYS
208
A
VAL
209
n
107
VAL
209
A
GLU
210
n
108
GLU
210
A
ASN
211
n
109
ASN
211
A
GLU
212
n
110
GLU
212
A
ARG
213
n
111
ARG
213
A
LYS
214
n
112
LYS
214
A
ILE
215
n
113
ILE
215
A
LEU
216
n
114
LEU
216
A
GLU
217
n
115
GLU
217
A
VAL
218
n
116
VAL
218
A
HIS
219
n
117
HIS
219
A
VAL
220
n
118
VAL
220
A
GLU
221
n
119
GLU
221
A
PRO
222
n
120
PRO
222
A
GLY
223
n
121
GLY
223
A
MET
224
n
122
MET
224
A
LYS
225
n
123
LYS
225
A
ASP
226
n
124
ASP
226
A
GLY
227
n
125
GLY
227
A
GLN
228
n
126
GLN
228
A
ARG
229
n
127
ARG
229
A
ILE
230
n
128
ILE
230
A
VAL
231
n
129
VAL
231
A
PHE
232
n
130
PHE
232
A
LYS
233
n
131
LYS
233
A
GLY
234
n
132
GLY
234
A
GLU
235
n
133
GLU
235
A
ALA
236
n
134
ALA
236
A
ASP
237
n
135
ASP
237
A
GLN
238
n
136
GLN
238
A
ALA
239
n
137
ALA
239
A
PRO
240
n
138
PRO
240
A
ASP
241
n
139
ASP
241
A
VAL
242
n
140
VAL
242
A
ILE
243
n
141
ILE
243
A
PRO
244
n
142
PRO
244
A
GLY
245
n
143
GLY
245
A
ASP
246
n
144
ASP
246
A
VAL
247
n
145
VAL
247
A
VAL
248
n
146
VAL
248
A
PHE
249
n
147
PHE
249
A
ILE
250
n
148
ILE
250
A
VAL
251
n
149
VAL
251
A
SER
252
n
150
SER
252
A
GLU
253
n
151
GLU
253
A
ARG
254
n
152
ARG
254
A
PRO
255
n
153
PRO
255
A
HIS
256
n
154
HIS
256
A
LYS
257
n
155
LYS
257
A
SER
258
n
156
SER
258
A
PHE
259
n
157
PHE
259
A
LYS
260
n
158
LYS
260
A
ARG
261
n
159
ARG
261
A
ASP
262
n
160
ASP
262
A
GLY
263
n
161
GLY
263
A
ASP
264
n
162
ASP
264
A
ASP
265
n
163
ASP
265
A
LEU
266
n
164
LEU
266
A
VAL
267
n
165
VAL
267
A
TYR
268
n
166
TYR
268
A
GLU
269
n
167
GLU
269
A
ALA
270
n
168
ALA
270
A
GLU
271
n
169
GLU
271
A
ILE
272
n
170
ILE
272
A
ASP
273
n
171
ASP
273
A
LEU
274
n
172
LEU
274
A
LEU
275
n
173
LEU
275
A
THR
276
n
174
THR
276
A
ALA
277
n
175
ALA
277
A
ILE
278
n
176
ILE
278
A
ALA
279
n
177
ALA
279
A
GLY
280
n
178
GLY
280
A
GLY
281
n
179
GLY
281
A
GLU
282
n
180
GLU
282
A
PHE
283
n
181
PHE
283
A
ALA
284
n
182
ALA
284
A
LEU
285
n
183
LEU
285
A
GLU
286
n
184
GLU
286
A
HIS
287
n
185
HIS
287
A
VAL
288
n
186
VAL
288
A
SER
289
n
187
SER
289
A
GLY
290
n
188
GLY
290
A
ASP
291
n
189
ASP
291
A
TRP
292
n
190
TRP
292
A
LEU
293
n
191
LEU
293
A
LYS
294
n
192
LYS
294
A
VAL
295
n
193
VAL
295
A
GLY
296
n
194
GLY
296
A
ILE
297
n
195
ILE
297
A
VAL
298
n
196
VAL
298
A
PRO
299
n
197
PRO
299
A
GLY
300
n
198
GLY
300
A
GLU
301
n
199
GLU
301
A
VAL
302
n
200
VAL
302
A
ILE
303
n
201
ILE
303
A
ALA
304
n
202
ALA
304
A
PRO
305
n
203
PRO
305
A
GLY
306
n
204
GLY
306
A
MET
307
n
205
MET
307
A
ARG
308
n
206
ARG
308
A
LYS
309
n
207
LYS
309
A
VAL
310
n
208
VAL
310
A
ILE
311
n
209
ILE
311
A
GLU
312
n
210
GLU
312
A
GLY
313
n
211
GLY
313
A
LYS
314
n
212
LYS
314
A
GLY
315
n
213
GLY
315
A
MET
316
n
214
MET
316
A
PRO
317
n
215
PRO
317
A
ILE
318
n
216
ILE
318
A
PRO
319
n
217
PRO
319
A
LYS
320
n
218
LYS
320
A
TYR
321
n
219
TYR
321
A
GLY
322
n
220
GLY
322
A
GLY
323
n
221
GLY
323
A
TYR
324
n
222
TYR
324
A
GLY
325
n
223
GLY
325
A
ASN
326
n
224
ASN
326
A
LEU
327
n
225
LEU
327
A
ILE
328
n
226
ILE
328
A
ILE
329
n
227
ILE
329
A
LYS
330
n
228
LYS
330
A
PHE
331
n
229
PHE
331
A
THR
332
n
230
THR
332
A
ILE
333
n
231
ILE
333
A
LYS
334
n
232
LYS
334
A
ASP
335
n
233
ASP
335
A
PRO
336
n
234
PRO
336
A
GLU
337
n
235
GLU
337
A
n
236
338
A
n
237
339
A
n
238
340
A
n
239
341
A
n
240
342
A
n
241
343
A
n
242
344
A
n
243
345
A
n
244
346
A
n
245
347
A
n
246
348
A
n
247
349
A
n
248
350
A
GLY
1
n
1
GLY
1
B
TRP
2
n
2
TRP
2
B
LEU
3
n
3
LEU
3
B
TYR
4
n
4
TYR
4
B
GLU
5
n
5
GLU
5
B
ILE
6
n
6
ILE
6
B
SER
7
n
7
SER
7
B
author_defined_assembly
2
dimeric
A
CYS
143
A
SG
CYS
41
1_555
A
ZN
351
C
ZN
ZN
1_555
A
CYS
146
A
SG
CYS
44
1_555
115.3
A
CYS
143
A
SG
CYS
41
1_555
A
ZN
351
C
ZN
ZN
1_555
A
CYS
201
A
SG
CYS
99
1_555
111.4
A
CYS
146
A
SG
CYS
44
1_555
A
ZN
351
C
ZN
ZN
1_555
A
CYS
201
A
SG
CYS
99
1_555
97.8
A
CYS
143
A
SG
CYS
41
1_555
A
ZN
351
C
ZN
ZN
1_555
A
CYS
204
A
SG
CYS
102
1_555
119.0
A
CYS
146
A
SG
CYS
44
1_555
A
ZN
351
C
ZN
ZN
1_555
A
CYS
204
A
SG
CYS
102
1_555
108.4
A
CYS
201
A
SG
CYS
99
1_555
A
ZN
351
C
ZN
ZN
1_555
A
CYS
204
A
SG
CYS
102
1_555
102.2
A
CYS
159
A
SG
CYS
57
1_555
A
ZN
352
D
ZN
ZN
1_555
A
CYS
162
A
SG
CYS
60
1_555
108.1
A
CYS
159
A
SG
CYS
57
1_555
A
ZN
352
D
ZN
ZN
1_555
A
CYS
185
A
SG
CYS
83
1_555
107.2
A
CYS
162
A
SG
CYS
60
1_555
A
ZN
352
D
ZN
ZN
1_555
A
CYS
185
A
SG
CYS
83
1_555
111.0
A
CYS
159
A
SG
CYS
57
1_555
A
ZN
352
D
ZN
ZN
1_555
A
CYS
188
A
SG
CYS
86
1_555
118.2
A
CYS
162
A
SG
CYS
60
1_555
A
ZN
352
D
ZN
ZN
1_555
A
CYS
188
A
SG
CYS
86
1_555
109.3
A
CYS
185
A
SG
CYS
83
1_555
A
ZN
352
D
ZN
ZN
1_555
A
CYS
188
A
SG
CYS
86
1_555
102.9
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
HIS
118
A
N
HIS
16
A
O
VAL
248
A
O
VAL
146
A
O
VAL
247
A
O
VAL
145
A
N
PHE
232
A
N
PHE
130
A
O
GLU
210
A
O
GLU
108
A
N
ILE
141
A
N
ILE
39
A
N
ALA
136
A
N
ALA
34
B
O
TYR
4
B
O
TYR
4
A
N
LYS
168
A
N
LYS
66
A
O
GLN
182
A
O
GLN
80
A
N
LYS
260
A
N
LYS
158
A
O
VAL
267
A
O
VAL
165
A
N
ALA
270
A
N
ALA
168
A
O
LYS
330
A
O
LYS
228
A
O
ILE
329
A
O
ILE
227
A
N
LYS
309
A
N
LYS
207
A
N
LEU
285
A
N
LEU
183
A
O
LEU
293
A
O
LEU
191
1
A
GLY
103
A
GLY
1
1
Y
1
A
ALA
104
A
ALA
2
1
Y
1
A
GLN
105
A
GLN
3
1
Y
1
A
ARG
106
A
ARG
4
1
Y
1
A
PRO
107
A
PRO
5
1
Y
1
A
ARG
108
A
ARG
6
1
Y
1
A
GLY
109
A
GLY
7
1
Y
1
A
ASN
338
A
ASN
236
1
Y
1
A
HIS
339
A
HIS
237
1
Y
1
A
PHE
340
A
PHE
238
1
Y
1
A
THR
341
A
THR
239
1
Y
1
A
SER
342
A
SER
240
1
Y
1
A
GLU
343
A
GLU
241
1
Y
1
A
GLU
344
A
GLU
242
1
Y
1
A
ASN
345
A
ASN
243
1
Y
1
A
LEU
346
A
LEU
244
1
Y
1
A
LYS
347
A
LYS
245
1
Y
1
A
LYS
348
A
LYS
246
1
Y
1
A
LEU
349
A
LEU
247
1
Y
1
A
GLU
350
A
GLU
248
1
Y
1
A
A
O
O
VAL
HOH
218
484
2.08
1
A
A
N
O
GLN
HOH
228
378
2.13
1
A
A
O
N
SER
ASP
289
291
2.15
1
A
A
N
O
VAL
HOH
288
492
2.15
1
A
A
OD1
O
ASN
HOH
211
482
2.16
1
A
A
O
O
ILE
HOH
303
407
2.18
1
A
GLN
111
92.04
92.97
1
A
CYS
146
-167.20
-47.67
1
A
ALA
155
-109.56
-64.08
1
A
VAL
156
-38.56
136.30
1
A
CYS
162
-154.18
88.77
1
A
ASN
163
-51.74
21.20
1
A
MET
174
-163.37
-110.30
1
A
THR
183
-77.58
-112.19
1
A
GLU
184
-21.18
94.98
1
A
ASP
186
26.86
-94.05
1
A
VAL
187
-99.69
34.35
1
A
HIS
189
130.49
124.52
1
A
THR
191
-151.52
80.95
1
A
ASP
193
176.25
-128.54
1
A
ILE
194
45.93
-109.98
1
A
ILE
195
81.92
-168.03
1
A
ASP
196
62.95
98.37
1
A
CYS
201
-38.40
-120.23
1
A
LYS
202
152.13
-32.35
1
A
CYS
204
-148.64
-0.82
1
A
ASN
205
41.84
16.78
1
A
LYS
208
57.05
0.08
1
A
ALA
236
-69.63
-178.33
1
A
ASP
241
117.17
-33.17
1
A
SER
258
-147.69
-26.19
1
A
GLU
282
-68.60
-172.14
1
A
PHE
283
166.63
135.63
1
A
GLU
312
-8.01
-121.53
1
A
MET
316
85.13
137.23
1
A
PRO
319
-36.15
-74.80
1
A
TYR
321
131.65
-92.87
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
47.8
3.70
6.70
0.00
3.70
0.00
-7.40
0.296
0.011
0.269
0.269
2.70
27.5
786
7827
7827
10.0
93.6
RANDOM
278924.70
278924.70
0.000
1,2
RESTRAINED
THROUGHOUT
0.0
MAD
Engh & Huber
FLAT MODEL
33.0786
0.332447
0.47
0.51
2.70
27.5
147
1962
2
0
1813
0.008
1.9
26.0
1.01
1.79
1.50
3.20
2.00
2.45
2.00
3.41
2.50
0.318
0.052
0.326
2.87
37
906
6
3.9
69.4
36.3
2.7
27.5
1NLT
7827
7827
0
0
0.054
1,2
27.3
5.33
0.01145
2.70
2.87
8.67
1,2
1.9
73.1
data reduction
DENZO
data scaling
SCALEPACK
phasing
SOLVE
refinement
CNS
1.0
The crystal structure of Hsp40 Ydj1
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
A
GLU
125
A
GLU
23
HELX_P
A
GLY
130
A
GLY
28
1
1
6
A
LEU
274
A
LEU
172
HELX_P
A
GLY
280
A
GLY
178
1
2
7
disulf
2.463
A
CYS
143
A
SG
CYS
41
1_555
A
CYS
146
A
SG
CYS
44
1_555
disulf
2.440
A
CYS
143
A
SG
CYS
41
1_555
A
CYS
201
A
SG
CYS
99
1_555
disulf
2.520
A
CYS
143
A
SG
CYS
41
1_555
A
CYS
204
A
SG
CYS
102
1_555
disulf
2.176
A
CYS
146
A
SG
CYS
44
1_555
A
CYS
201
A
SG
CYS
99
1_555
disulf
2.318
A
CYS
146
A
SG
CYS
44
1_555
A
CYS
204
A
SG
CYS
102
1_555
disulf
2.316
A
CYS
159
A
SG
CYS
57
1_555
A
CYS
162
A
SG
CYS
60
1_555
disulf
2.308
A
CYS
159
A
SG
CYS
57
1_555
A
CYS
185
A
SG
CYS
83
1_555
disulf
2.474
A
CYS
159
A
SG
CYS
57
1_555
A
CYS
188
A
SG
CYS
86
1_555
disulf
2.353
A
CYS
162
A
SG
CYS
60
1_555
A
CYS
185
A
SG
CYS
83
1_555
disulf
2.340
A
CYS
162
A
SG
CYS
60
1_555
A
CYS
188
A
SG
CYS
86
1_555
disulf
2.251
A
CYS
185
A
SG
CYS
83
1_555
A
CYS
188
A
SG
CYS
86
1_555
disulf
2.256
A
CYS
201
A
SG
CYS
99
1_555
A
CYS
204
A
SG
CYS
102
1_555
metalc
1.490
A
CYS
143
A
SG
CYS
41
1_555
A
ZN
351
C
ZN
ZN
1_555
metalc
1.425
A
CYS
146
A
SG
CYS
44
1_555
A
ZN
351
C
ZN
ZN
1_555
metalc
1.437
A
CYS
159
A
SG
CYS
57
1_555
A
ZN
352
D
ZN
ZN
1_555
metalc
1.424
A
CYS
162
A
SG
CYS
60
1_555
A
ZN
352
D
ZN
ZN
1_555
metalc
1.432
A
CYS
185
A
SG
CYS
83
1_555
A
ZN
352
D
ZN
ZN
1_555
metalc
1.446
A
CYS
188
A
SG
CYS
86
1_555
A
ZN
352
D
ZN
ZN
1_555
metalc
1.464
A
CYS
201
A
SG
CYS
99
1_555
A
ZN
351
C
ZN
ZN
1_555
metalc
1.434
A
CYS
204
A
SG
CYS
102
1_555
A
ZN
351
C
ZN
ZN
1_555
PROTEIN TRANSPORT
beta-strands, chaperone, heat shock, mitochondrion, PROTEIN TRANSPORT
MAS5_YEAST
UNP
1
103
P25491
GAQRPRGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQ
TECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRD
GDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPENHFTS
EENLKKLE
1NLT
PDB
2
1NLT
103
350
1NLT
103
350
P25491
A
1
1
248
1
7
1NLT
1
7
1NLT
B
2
1
7
1
PHE
engineered mutation
ASP
335
1NLT
A
P25491
UNP
336
233
3
3
2
4
2
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
ILE
116
A
ILE
14
A
ALA
122
A
ALA
20
A
VAL
247
A
VAL
145
A
GLU
253
A
GLU
151
A
ARG
229
A
ARG
127
A
PHE
232
A
PHE
130
A
VAL
209
A
VAL
107
A
VAL
220
A
VAL
118
A
ARG
131
A
ARG
29
A
LEU
142
A
LEU
40
B
TRP
2
B
TRP
2
B
GLU
5
B
GLU
5
A
LYS
168
A
LYS
66
A
GLN
173
A
GLN
71
A
MET
177
A
MET
75
A
GLN
182
A
GLN
80
A
LYS
260
A
LYS
158
A
ASP
262
A
ASP
160
A
ASP
265
A
ASP
163
A
ASP
273
A
ASP
171
A
LEU
327
A
LEU
225
A
LYS
334
A
LYS
232
A
ARG
308
A
ARG
206
A
ILE
311
A
ILE
209
A
ALA
284
A
ALA
182
A
GLU
286
A
GLU
184
A
TRP
292
A
TRP
190
A
LYS
294
A
LYS
192
BINDING SITE FOR RESIDUE ZN A 351
A
ZN
351
Software
5
BINDING SITE FOR RESIDUE ZN A 352
A
ZN
352
Software
4
A
CYS
143
A
CYS
41
5
1_555
A
GLU
145
A
GLU
43
5
1_555
A
CYS
146
A
CYS
44
5
1_555
A
CYS
201
A
CYS
99
5
1_555
A
CYS
204
A
CYS
102
5
1_555
A
CYS
159
A
CYS
57
4
1_555
A
CYS
162
A
CYS
60
4
1_555
A
CYS
185
A
CYS
83
4
1_555
A
CYS
188
A
CYS
86
4
1_555
154
P 32 2 1