0.016529
0.000000
0.000000
0.000000
0.016207
0.000000
0.000000
0.000000
0.014620
0.00000
0.00000
0.00000
Galkin, A.
Sarikaya, E.
Krajewski, W.
Howard, A.
Herzberg, O.
Structure 2 Function Project (S2F)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
60.500
61.700
68.400
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
O
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
R
C
N
295
N
O
N
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
N
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
N
345
N
O
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
N
363
N
C
N
364
N
C
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
Y
309
N
sing
Y
310
N
sing
N
311
N
sing
Y
312
N
sing
Y
313
N
doub
N
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
Y
332
N
doub
Y
333
N
sing
Y
334
N
sing
N
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
doub
N
339
N
sing
Y
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
To be Published
0353
Structure of yqgF from Escherichia coli, a hypothetical protein
10.2210/pdb1nmn/pdb
pdb_00001nmn
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2002-07-07
ADSC QUANTUM 4
Si(111) double crystal system
SINGLE WAVELENGTH
M
x-ray
1
0.97240
1.0
17-ID
APS
0.97240
SYNCHROTRON
APS BEAMLINE 17-ID
15205.271
Hypothetical protein yqgF
2
man
polymer
18.015
water
163
nat
water
no
no
MSGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFA
NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSASAVIILESYFEQGY
MSGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFA
NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSASAVIILESYFEQGY
A,B
yqgF
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
YQGF
562
Escherichia coli
562
Escherichia coli
BL21(DE3)Star
pET100/D-TOPO
pYQGF
1
2.10
41.38
VAPOR DIFFUSION, HANGING DROP
4.0
0.8 M sodium malonate, 0.1 M sodium acetate, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
Structure 2 Function Project
S2F
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
1
0
2004-03-02
1
1
2008-04-29
1
2
2011-07-13
1
3
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
Y
RCSB
Y
RCSB
2003-01-10
REL
REL
HOH
water
HOH
3
2
HOH
HOH
139
A
HOH
4
2
HOH
HOH
140
A
HOH
5
2
HOH
HOH
141
A
HOH
7
2
HOH
HOH
142
A
HOH
8
2
HOH
HOH
143
A
HOH
9
2
HOH
HOH
144
A
HOH
10
2
HOH
HOH
145
A
HOH
14
2
HOH
HOH
146
A
HOH
15
2
HOH
HOH
147
A
HOH
16
2
HOH
HOH
148
A
HOH
18
2
HOH
HOH
149
A
HOH
19
2
HOH
HOH
150
A
HOH
20
2
HOH
HOH
151
A
HOH
22
2
HOH
HOH
152
A
HOH
25
2
HOH
HOH
153
A
HOH
27
2
HOH
HOH
154
A
HOH
29
2
HOH
HOH
155
A
HOH
30
2
HOH
HOH
156
A
HOH
31
2
HOH
HOH
157
A
HOH
33
2
HOH
HOH
158
A
HOH
34
2
HOH
HOH
159
A
HOH
35
2
HOH
HOH
160
A
HOH
36
2
HOH
HOH
161
A
HOH
37
2
HOH
HOH
162
A
HOH
38
2
HOH
HOH
163
A
HOH
41
2
HOH
HOH
164
A
HOH
42
2
HOH
HOH
165
A
HOH
43
2
HOH
HOH
166
A
HOH
44
2
HOH
HOH
167
A
HOH
46
2
HOH
HOH
168
A
HOH
50
2
HOH
HOH
169
A
HOH
51
2
HOH
HOH
170
A
HOH
53
2
HOH
HOH
171
A
HOH
54
2
HOH
HOH
172
A
HOH
57
2
HOH
HOH
173
A
HOH
58
2
HOH
HOH
174
A
HOH
59
2
HOH
HOH
175
A
HOH
63
2
HOH
HOH
176
A
HOH
65
2
HOH
HOH
177
A
HOH
68
2
HOH
HOH
178
A
HOH
69
2
HOH
HOH
179
A
HOH
71
2
HOH
HOH
180
A
HOH
74
2
HOH
HOH
181
A
HOH
75
2
HOH
HOH
182
A
HOH
80
2
HOH
HOH
183
A
HOH
83
2
HOH
HOH
184
A
HOH
84
2
HOH
HOH
185
A
HOH
85
2
HOH
HOH
186
A
HOH
89
2
HOH
HOH
187
A
HOH
90
2
HOH
HOH
188
A
HOH
91
2
HOH
HOH
189
A
HOH
95
2
HOH
HOH
190
A
HOH
98
2
HOH
HOH
191
A
HOH
99
2
HOH
HOH
192
A
HOH
100
2
HOH
HOH
193
A
HOH
105
2
HOH
HOH
194
A
HOH
106
2
HOH
HOH
195
A
HOH
107
2
HOH
HOH
196
A
HOH
111
2
HOH
HOH
197
A
HOH
112
2
HOH
HOH
198
A
HOH
119
2
HOH
HOH
199
A
HOH
125
2
HOH
HOH
200
A
HOH
131
2
HOH
HOH
201
A
HOH
136
2
HOH
HOH
202
A
HOH
138
2
HOH
HOH
203
A
HOH
141
2
HOH
HOH
204
A
HOH
143
2
HOH
HOH
205
A
HOH
145
2
HOH
HOH
206
A
HOH
147
2
HOH
HOH
207
A
HOH
150
2
HOH
HOH
208
A
HOH
152
2
HOH
HOH
209
A
HOH
160
2
HOH
HOH
210
A
HOH
161
2
HOH
HOH
211
A
HOH
166
2
HOH
HOH
212
A
HOH
168
2
HOH
HOH
213
A
HOH
182
2
HOH
HOH
214
A
HOH
188
2
HOH
HOH
215
A
HOH
189
2
HOH
HOH
216
A
HOH
193
2
HOH
HOH
217
A
HOH
196
2
HOH
HOH
218
A
HOH
199
2
HOH
HOH
219
A
HOH
204
2
HOH
HOH
220
A
HOH
206
2
HOH
HOH
221
A
HOH
213
2
HOH
HOH
222
A
HOH
216
2
HOH
HOH
223
A
HOH
221
2
HOH
HOH
224
A
HOH
230
2
HOH
HOH
225
A
HOH
232
2
HOH
HOH
226
A
HOH
234
2
HOH
HOH
227
A
HOH
2
2
HOH
HOH
139
B
HOH
6
2
HOH
HOH
140
B
HOH
11
2
HOH
HOH
141
B
HOH
12
2
HOH
HOH
142
B
HOH
13
2
HOH
HOH
143
B
HOH
17
2
HOH
HOH
144
B
HOH
21
2
HOH
HOH
145
B
HOH
23
2
HOH
HOH
146
B
HOH
24
2
HOH
HOH
147
B
HOH
28
2
HOH
HOH
148
B
HOH
39
2
HOH
HOH
149
B
HOH
45
2
HOH
HOH
150
B
HOH
47
2
HOH
HOH
151
B
HOH
48
2
HOH
HOH
152
B
HOH
49
2
HOH
HOH
153
B
HOH
52
2
HOH
HOH
154
B
HOH
56
2
HOH
HOH
155
B
HOH
60
2
HOH
HOH
156
B
HOH
61
2
HOH
HOH
157
B
HOH
62
2
HOH
HOH
158
B
HOH
64
2
HOH
HOH
159
B
HOH
67
2
HOH
HOH
160
B
HOH
72
2
HOH
HOH
161
B
HOH
73
2
HOH
HOH
162
B
HOH
76
2
HOH
HOH
163
B
HOH
77
2
HOH
HOH
164
B
HOH
78
2
HOH
HOH
165
B
HOH
79
2
HOH
HOH
166
B
HOH
81
2
HOH
HOH
167
B
HOH
82
2
HOH
HOH
168
B
HOH
86
2
HOH
HOH
169
B
HOH
96
2
HOH
HOH
170
B
HOH
97
2
HOH
HOH
171
B
HOH
101
2
HOH
HOH
172
B
HOH
102
2
HOH
HOH
173
B
HOH
104
2
HOH
HOH
174
B
HOH
110
2
HOH
HOH
175
B
HOH
113
2
HOH
HOH
176
B
HOH
116
2
HOH
HOH
177
B
HOH
121
2
HOH
HOH
178
B
HOH
122
2
HOH
HOH
179
B
HOH
123
2
HOH
HOH
180
B
HOH
127
2
HOH
HOH
181
B
HOH
132
2
HOH
HOH
182
B
HOH
133
2
HOH
HOH
183
B
HOH
140
2
HOH
HOH
184
B
HOH
142
2
HOH
HOH
185
B
HOH
146
2
HOH
HOH
186
B
HOH
155
2
HOH
HOH
187
B
HOH
165
2
HOH
HOH
188
B
HOH
169
2
HOH
HOH
189
B
HOH
170
2
HOH
HOH
190
B
HOH
171
2
HOH
HOH
191
B
HOH
172
2
HOH
HOH
192
B
HOH
174
2
HOH
HOH
193
B
HOH
175
2
HOH
HOH
194
B
HOH
177
2
HOH
HOH
195
B
HOH
178
2
HOH
HOH
196
B
HOH
180
2
HOH
HOH
197
B
HOH
181
2
HOH
HOH
198
B
HOH
192
2
HOH
HOH
199
B
HOH
200
2
HOH
HOH
200
B
HOH
201
2
HOH
HOH
201
B
HOH
203
2
HOH
HOH
202
B
HOH
205
2
HOH
HOH
203
B
HOH
207
2
HOH
HOH
204
B
HOH
217
2
HOH
HOH
205
B
HOH
218
2
HOH
HOH
206
B
HOH
226
2
HOH
HOH
207
B
HOH
229
2
HOH
HOH
208
B
HOH
238
2
HOH
HOH
209
B
HOH
241
2
HOH
HOH
210
B
HOH
245
2
HOH
HOH
211
B
HOH
250
2
HOH
HOH
212
B
n
1
1
A
SER
2
n
2
SER
2
A
GLY
3
n
3
GLY
3
A
THR
4
n
4
THR
4
A
LEU
5
n
5
LEU
5
A
LEU
6
n
6
LEU
6
A
ALA
7
n
7
ALA
7
A
PHE
8
n
8
PHE
8
A
ASP
9
n
9
ASP
9
A
PHE
10
n
10
PHE
10
A
GLY
11
n
11
GLY
11
A
THR
12
n
12
THR
12
A
LYS
13
n
13
LYS
13
A
SER
14
n
14
SER
14
A
ILE
15
n
15
ILE
15
A
GLY
16
n
16
GLY
16
A
VAL
17
n
17
VAL
17
A
ALA
18
n
18
ALA
18
A
VAL
19
n
19
VAL
19
A
GLY
20
n
20
GLY
20
A
GLN
21
n
21
GLN
21
A
ARG
22
n
22
ARG
22
A
ILE
23
n
23
ILE
23
A
THR
24
n
24
THR
24
A
GLY
25
n
25
GLY
25
A
THR
26
n
26
THR
26
A
ALA
27
n
27
ALA
27
A
ARG
28
n
28
ARG
28
A
PRO
29
n
29
PRO
29
A
LEU
30
n
30
LEU
30
A
PRO
31
n
31
PRO
31
A
ALA
32
n
32
ALA
32
A
ILE
33
n
33
ILE
33
A
LYS
34
n
34
LYS
34
A
ALA
35
n
35
ALA
35
A
GLN
36
n
36
GLN
36
A
ASP
37
n
37
ASP
37
A
GLY
38
n
38
GLY
38
A
THR
39
n
39
THR
39
A
PRO
40
n
40
PRO
40
A
ASP
41
n
41
ASP
41
A
TRP
42
n
42
TRP
42
A
ASN
43
n
43
ASN
43
A
ILE
44
n
44
ILE
44
A
ILE
45
n
45
ILE
45
A
GLU
46
n
46
GLU
46
A
ARG
47
n
47
ARG
47
A
LEU
48
n
48
LEU
48
A
LEU
49
n
49
LEU
49
A
LYS
50
n
50
LYS
50
A
GLU
51
n
51
GLU
51
A
TRP
52
n
52
TRP
52
A
GLN
53
n
53
GLN
53
A
PRO
54
n
54
PRO
54
A
ASP
55
n
55
ASP
55
A
GLU
56
n
56
GLU
56
A
ILE
57
n
57
ILE
57
A
ILE
58
n
58
ILE
58
A
VAL
59
n
59
VAL
59
A
GLY
60
n
60
GLY
60
A
LEU
61
n
61
LEU
61
A
PRO
62
n
62
PRO
62
A
LEU
63
n
63
LEU
63
A
ASN
64
n
64
ASN
64
A
MET
65
n
65
MET
65
A
ASP
66
n
66
ASP
66
A
GLY
67
n
67
GLY
67
A
THR
68
n
68
THR
68
A
GLU
69
n
69
GLU
69
A
GLN
70
n
70
GLN
70
A
PRO
71
n
71
PRO
71
A
LEU
72
n
72
LEU
72
A
THR
73
n
73
THR
73
A
ALA
74
n
74
ALA
74
A
ARG
75
n
75
ARG
75
A
ALA
76
n
76
ALA
76
A
ARG
77
n
77
ARG
77
A
LYS
78
n
78
LYS
78
A
PHE
79
n
79
PHE
79
A
ALA
80
n
80
ALA
80
A
ASN
81
n
81
ASN
81
A
ARG
82
n
82
ARG
82
A
ILE
83
n
83
ILE
83
A
HIS
84
n
84
HIS
84
A
GLY
85
n
85
GLY
85
A
ARG
86
n
86
ARG
86
A
PHE
87
n
87
PHE
87
A
GLY
88
n
88
GLY
88
A
VAL
89
n
89
VAL
89
A
GLU
90
n
90
GLU
90
A
VAL
91
n
91
VAL
91
A
LYS
92
n
92
LYS
92
A
LEU
93
n
93
LEU
93
A
HIS
94
n
94
HIS
94
A
ASP
95
n
95
ASP
95
A
GLU
96
n
96
GLU
96
A
ARG
97
n
97
ARG
97
A
LEU
98
n
98
LEU
98
A
SER
99
n
99
SER
99
A
THR
100
n
100
THR
100
A
VAL
101
n
101
VAL
101
A
n
102
102
A
n
103
103
A
n
104
104
A
n
105
105
A
n
106
106
A
n
107
107
A
n
108
108
A
n
109
109
A
n
110
110
A
n
111
111
A
n
112
112
A
n
113
113
A
n
114
114
A
n
115
115
A
n
116
116
A
n
117
117
A
n
118
118
A
GLY
119
n
119
GLY
119
A
LYS
120
n
120
LYS
120
A
VAL
121
n
121
VAL
121
A
ASP
122
n
122
ASP
122
A
SER
123
n
123
SER
123
A
ALA
124
n
124
ALA
124
A
SER
125
n
125
SER
125
A
ALA
126
n
126
ALA
126
A
VAL
127
n
127
VAL
127
A
ILE
128
n
128
ILE
128
A
ILE
129
n
129
ILE
129
A
LEU
130
n
130
LEU
130
A
GLU
131
n
131
GLU
131
A
SER
132
n
132
SER
132
A
TYR
133
n
133
TYR
133
A
PHE
134
n
134
PHE
134
A
GLU
135
n
135
GLU
135
A
GLN
136
n
136
GLN
136
A
GLY
137
n
137
GLY
137
A
TYR
138
n
138
TYR
138
A
n
1
1
B
SER
2
n
2
SER
2
B
GLY
3
n
3
GLY
3
B
THR
4
n
4
THR
4
B
LEU
5
n
5
LEU
5
B
LEU
6
n
6
LEU
6
B
ALA
7
n
7
ALA
7
B
PHE
8
n
8
PHE
8
B
ASP
9
n
9
ASP
9
B
PHE
10
n
10
PHE
10
B
GLY
11
n
11
GLY
11
B
THR
12
n
12
THR
12
B
LYS
13
n
13
LYS
13
B
SER
14
n
14
SER
14
B
ILE
15
n
15
ILE
15
B
GLY
16
n
16
GLY
16
B
VAL
17
n
17
VAL
17
B
ALA
18
n
18
ALA
18
B
VAL
19
n
19
VAL
19
B
GLY
20
n
20
GLY
20
B
GLN
21
n
21
GLN
21
B
ARG
22
n
22
ARG
22
B
ILE
23
n
23
ILE
23
B
THR
24
n
24
THR
24
B
GLY
25
n
25
GLY
25
B
THR
26
n
26
THR
26
B
ALA
27
n
27
ALA
27
B
ARG
28
n
28
ARG
28
B
PRO
29
n
29
PRO
29
B
LEU
30
n
30
LEU
30
B
PRO
31
n
31
PRO
31
B
ALA
32
n
32
ALA
32
B
ILE
33
n
33
ILE
33
B
LYS
34
n
34
LYS
34
B
ALA
35
n
35
ALA
35
B
GLN
36
n
36
GLN
36
B
ASP
37
n
37
ASP
37
B
GLY
38
n
38
GLY
38
B
THR
39
n
39
THR
39
B
PRO
40
n
40
PRO
40
B
ASP
41
n
41
ASP
41
B
TRP
42
n
42
TRP
42
B
ASN
43
n
43
ASN
43
B
ILE
44
n
44
ILE
44
B
ILE
45
n
45
ILE
45
B
GLU
46
n
46
GLU
46
B
ARG
47
n
47
ARG
47
B
LEU
48
n
48
LEU
48
B
LEU
49
n
49
LEU
49
B
LYS
50
n
50
LYS
50
B
GLU
51
n
51
GLU
51
B
TRP
52
n
52
TRP
52
B
GLN
53
n
53
GLN
53
B
PRO
54
n
54
PRO
54
B
ASP
55
n
55
ASP
55
B
GLU
56
n
56
GLU
56
B
ILE
57
n
57
ILE
57
B
ILE
58
n
58
ILE
58
B
VAL
59
n
59
VAL
59
B
GLY
60
n
60
GLY
60
B
LEU
61
n
61
LEU
61
B
PRO
62
n
62
PRO
62
B
LEU
63
n
63
LEU
63
B
ASN
64
n
64
ASN
64
B
MET
65
n
65
MET
65
B
ASP
66
n
66
ASP
66
B
GLY
67
n
67
GLY
67
B
THR
68
n
68
THR
68
B
GLU
69
n
69
GLU
69
B
GLN
70
n
70
GLN
70
B
PRO
71
n
71
PRO
71
B
LEU
72
n
72
LEU
72
B
THR
73
n
73
THR
73
B
ALA
74
n
74
ALA
74
B
ARG
75
n
75
ARG
75
B
ALA
76
n
76
ALA
76
B
ARG
77
n
77
ARG
77
B
LYS
78
n
78
LYS
78
B
PHE
79
n
79
PHE
79
B
ALA
80
n
80
ALA
80
B
ASN
81
n
81
ASN
81
B
ARG
82
n
82
ARG
82
B
ILE
83
n
83
ILE
83
B
HIS
84
n
84
HIS
84
B
GLY
85
n
85
GLY
85
B
ARG
86
n
86
ARG
86
B
PHE
87
n
87
PHE
87
B
GLY
88
n
88
GLY
88
B
VAL
89
n
89
VAL
89
B
GLU
90
n
90
GLU
90
B
VAL
91
n
91
VAL
91
B
LYS
92
n
92
LYS
92
B
LEU
93
n
93
LEU
93
B
HIS
94
n
94
HIS
94
B
ASP
95
n
95
ASP
95
B
GLU
96
n
96
GLU
96
B
ARG
97
n
97
ARG
97
B
LEU
98
n
98
LEU
98
B
SER
99
n
99
SER
99
B
THR
100
n
100
THR
100
B
n
101
101
B
n
102
102
B
n
103
103
B
n
104
104
B
n
105
105
B
n
106
106
B
n
107
107
B
n
108
108
B
n
109
109
B
n
110
110
B
n
111
111
B
n
112
112
B
n
113
113
B
n
114
114
B
n
115
115
B
n
116
116
B
n
117
117
B
n
118
118
B
n
119
119
B
n
120
120
B
VAL
121
n
121
VAL
121
B
ASP
122
n
122
ASP
122
B
SER
123
n
123
SER
123
B
ALA
124
n
124
ALA
124
B
SER
125
n
125
SER
125
B
ALA
126
n
126
ALA
126
B
VAL
127
n
127
VAL
127
B
ILE
128
n
128
ILE
128
B
ILE
129
n
129
ILE
129
B
LEU
130
n
130
LEU
130
B
GLU
131
n
131
GLU
131
B
SER
132
n
132
SER
132
B
TYR
133
n
133
TYR
133
B
PHE
134
n
134
PHE
134
B
GLU
135
n
135
GLU
135
B
GLN
136
n
136
GLN
136
B
GLY
137
n
137
GLY
137
B
TYR
138
n
138
TYR
138
B
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LEU
30
A
O
LEU
30
A
N
VAL
17
A
N
VAL
17
A
O
GLY
20
A
O
GLY
20
A
N
LEU
5
A
N
LEU
5
A
N
LEU
6
A
N
LEU
6
A
O
ILE
58
A
O
ILE
58
A
N
LEU
61
A
N
LEU
61
A
O
GLU
96
A
O
GLU
96
B
O
ILE
33
B
O
ILE
33
B
N
ILE
15
B
N
ILE
15
B
O
GLY
20
B
O
GLY
20
B
N
LEU
5
B
N
LEU
5
B
N
PHE
8
B
N
PHE
8
B
O
ILE
58
B
O
ILE
58
B
N
ILE
57
B
N
ILE
57
B
O
LYS
92
B
O
LYS
92
1
A
MET
1
A
MET
1
1
Y
1
A
GLU
102
A
GLU
102
1
Y
1
A
ALA
103
A
ALA
103
1
Y
1
A
ARG
104
A
ARG
104
1
Y
1
A
SER
105
A
SER
105
1
Y
1
A
GLY
106
A
GLY
106
1
Y
1
A
LEU
107
A
LEU
107
1
Y
1
A
PHE
108
A
PHE
108
1
Y
1
A
GLU
109
A
GLU
109
1
Y
1
A
GLN
110
A
GLN
110
1
Y
1
A
GLY
111
A
GLY
111
1
Y
1
A
GLY
112
A
GLY
112
1
Y
1
A
TYR
113
A
TYR
113
1
Y
1
A
ARG
114
A
ARG
114
1
Y
1
A
ALA
115
A
ALA
115
1
Y
1
A
LEU
116
A
LEU
116
1
Y
1
A
ASN
117
A
ASN
117
1
Y
1
A
LYS
118
A
LYS
118
1
Y
1
B
MET
1
B
MET
1
1
Y
1
B
VAL
101
B
VAL
101
1
Y
1
B
GLU
102
B
GLU
102
1
Y
1
B
ALA
103
B
ALA
103
1
Y
1
B
ARG
104
B
ARG
104
1
Y
1
B
SER
105
B
SER
105
1
Y
1
B
GLY
106
B
GLY
106
1
Y
1
B
LEU
107
B
LEU
107
1
Y
1
B
PHE
108
B
PHE
108
1
Y
1
B
GLU
109
B
GLU
109
1
Y
1
B
GLN
110
B
GLN
110
1
Y
1
B
GLY
111
B
GLY
111
1
Y
1
B
GLY
112
B
GLY
112
1
Y
1
B
TYR
113
B
TYR
113
1
Y
1
B
ARG
114
B
ARG
114
1
Y
1
B
ALA
115
B
ALA
115
1
Y
1
B
LEU
116
B
LEU
116
1
Y
1
B
ASN
117
B
ASN
117
1
Y
1
B
LYS
118
B
LYS
118
1
Y
1
B
GLY
119
B
GLY
119
1
Y
1
B
LYS
120
B
LYS
120
1
Y
1
21.49
2.70
111.00
132.49
A
A
A
N
CA
C
LEU
LEU
LEU
98
98
98
N
1
16.11
2.50
121.70
137.81
A
A
A
C
N
CA
LEU
SER
SER
98
99
99
Y
1
A
ARG
97
-68.39
18.21
1
B
LYS
13
-144.76
24.20
1
B
SER
14
-172.90
141.74
1
B
GLN
36
12.61
98.27
27
0.265
0.196
2.3
30.0
791
11837
11736
99.1
random
1
THROUGHOUT
2
MIR
Engh & Huber
2.3
30.0
163
2005
0
0
1842
0.019
1.9
0.272
0.217
2.38
81
1052
2.3
30
1NMN
11857
11857
0
0
0.043
1
27.4
99.8
0.071
2.3
2.38
100
data reduction
DENZO
data scaling
SCALEPACK
phasing
SOLVE
model building
RESOLVE
refinement
CNS
1.0
phasing
RESOLVE
Structure of yqgF from Escherichia coli, a hypothetical protein
1
N
N
1
N
N
2
N
N
2
N
N
A
ASP
41
A
ASP
41
HELX_P
A
GLN
53
A
GLN
53
1
1
13
A
LEU
72
A
LEU
72
HELX_P
A
GLY
88
A
GLY
88
1
2
17
A
LYS
120
A
LYS
120
HELX_P
A
ASP
122
A
ASP
122
5
3
3
A
SER
123
A
SER
123
HELX_P
A
GLN
136
A
GLN
136
1
4
14
B
GLN
36
B
GLN
36
HELX_P
B
THR
39
B
THR
39
5
5
4
B
ASP
41
B
ASP
41
HELX_P
B
GLN
53
B
GLN
53
1
6
13
B
LEU
72
B
LEU
72
HELX_P
B
GLY
88
B
GLY
88
1
7
17
B
SER
123
B
SER
123
HELX_P
B
GLY
137
B
GLY
137
1
8
15
STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Structural genomics, hypothetical protein, yqgF, Structure 2 Function Project, S2F, UNKNOWN FUNCTION
RUVX_ECOLI
UNP
1
1
P0A8I1
MSGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFA
NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSASAVIILESYFEQGY
1
138
1NMN
1
138
P0A8I1
A
1
1
138
1
138
1NMN
1
138
P0A8I1
B
1
1
138
5
5
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
A
THR
26
A
THR
26
A
LYS
34
A
LYS
34
A
SER
14
A
SER
14
A
GLN
21
A
GLN
21
A
THR
4
A
THR
4
A
ASP
9
A
ASP
9
A
GLU
56
A
GLU
56
A
PRO
62
A
PRO
62
A
VAL
91
A
VAL
91
A
GLU
96
A
GLU
96
B
THR
26
B
THR
26
B
LYS
34
B
LYS
34
B
SER
14
B
SER
14
B
GLN
21
B
GLN
21
B
THR
4
B
THR
4
B
ASP
9
B
ASP
9
B
GLU
56
B
GLU
56
B
LEU
61
B
LEU
61
B
GLU
90
B
GLU
90
B
ASP
95
B
ASP
95
19
P 21 21 21