0.018248
0.000000
0.000000
0.000000
0.016491
0.000000
0.000000
0.000000
0.018219
0.00000
0.00000
0.00000
Lehmann, C.
Galkin, A.
Pullalarevu, S.
Sarikaya, E.
Krajewski, W.
Lim, K.
Howard, A.
Herzberg, O.
Structure 2 Function Project (S2F)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
54.802
60.638
54.888
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
Y
221
N
C
Y
222
N
C
Y
223
N
C
Y
224
N
C
Y
225
N
C
Y
226
N
C
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
N
N
240
S
C
N
241
N
C
N
242
N
O
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
O
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
N
N
257
S
C
N
258
N
C
N
259
N
O
N
260
N
C
N
261
N
O
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
S
N
271
N
O
N
272
N
O
N
273
N
O
N
274
N
O
N
275
N
N
N
276
S
C
N
277
N
C
N
278
N
O
N
279
R
C
N
280
N
O
N
281
N
C
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
N
N
293
S
C
N
294
N
C
N
295
N
O
N
296
N
C
Y
297
N
C
Y
298
N
C
Y
299
N
C
Y
300
N
N
Y
301
N
C
Y
302
N
C
Y
303
N
C
Y
304
N
C
Y
305
N
C
N
306
N
O
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
N
N
320
S
C
N
321
N
C
N
322
N
O
N
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
N
330
N
O
N
331
N
O
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
N
N
344
S
C
N
345
N
C
N
346
N
O
N
347
N
C
N
348
N
C
N
349
N
C
N
350
N
O
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
Y
216
N
doub
Y
217
N
sing
Y
218
N
sing
N
219
N
sing
Y
220
N
doub
N
221
N
sing
Y
222
N
doub
N
223
N
sing
Y
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
doub
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
doub
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
doub
Y
290
N
sing
Y
291
N
sing
N
292
N
sing
Y
293
N
doub
Y
294
N
sing
Y
295
N
sing
N
296
N
sing
Y
297
N
sing
Y
298
N
doub
N
299
N
sing
Y
300
N
doub
N
301
N
sing
Y
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
N
322
N
sing
Y
323
N
doub
N
324
N
sing
Y
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
To be Published
0353
Structure of the hypothetical protein ygiW from E. coli.
10.2210/pdb1nnx/pdb
pdb_00001nnx
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
173.0
1
MIRROR
CCD
2002-12-01
MARRESEARCH
SI(111) DOUBLE CRYSTAL SYSTEM
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
17-BM
APS
1.0000
SYNCHROTRON
APS BEAMLINE 17-BM
11918.005
Protein ygiW
1
man
polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
125
nat
water
no
no
EQGGFSGPSATQSQAGGFQGPNGSVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTP
KDTVEIQGEVDKDWNSVEIDVKQIRKVNP
EQGGFSGPSATQSQAGGFQGPNGSVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTP
KDTVEIQGEVDKDWNSVEIDVKQIRKVNP
A
ygiW
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
YGIW
562
Escherichia coli
562
Escherichia coli
BL21(DE3)Star
pET100/D-TOPO
pYGIW
1
1.89
35.68
2.40
1.25 M (NH4)2SO4, 0.1 M Na acetate, pH 2.4, VAPOR DIFFUSION, HANGING DROP, temperature 294K, pH 2.40
294
Structure 2 Function Project
S2F
software
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Refinement description
Data collection
Database references
Derived calculations
1
0
2004-03-09
1
1
2008-04-29
1
2
2011-07-13
1
3
2019-07-24
1
4
2024-02-14
_software.classification
_software.name
_software.version
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2003-01-14
REL
REL
SO4
SULFATE ION
HOH
water
SO4
501
2
SO4
SO4
501
A
HOH
1001
3
HOH
HOH
1001
A
HOH
1002
3
HOH
HOH
1002
A
HOH
1003
3
HOH
HOH
1003
A
HOH
1004
3
HOH
HOH
1004
A
HOH
1005
3
HOH
HOH
1005
A
HOH
1006
3
HOH
HOH
1006
A
HOH
1007
3
HOH
HOH
1007
A
HOH
1008
3
HOH
HOH
1008
A
HOH
1009
3
HOH
HOH
1009
A
HOH
1010
3
HOH
HOH
1010
A
HOH
1011
3
HOH
HOH
1011
A
HOH
1012
3
HOH
HOH
1012
A
HOH
1013
3
HOH
HOH
1013
A
HOH
1014
3
HOH
HOH
1014
A
HOH
1015
3
HOH
HOH
1015
A
HOH
1016
3
HOH
HOH
1016
A
HOH
1017
3
HOH
HOH
1017
A
HOH
1018
3
HOH
HOH
1018
A
HOH
1019
3
HOH
HOH
1019
A
HOH
1020
3
HOH
HOH
1020
A
HOH
1021
3
HOH
HOH
1021
A
HOH
1022
3
HOH
HOH
1022
A
HOH
1023
3
HOH
HOH
1023
A
HOH
1024
3
HOH
HOH
1024
A
HOH
1025
3
HOH
HOH
1025
A
HOH
1026
3
HOH
HOH
1026
A
HOH
1027
3
HOH
HOH
1027
A
HOH
1028
3
HOH
HOH
1028
A
HOH
1029
3
HOH
HOH
1029
A
HOH
1030
3
HOH
HOH
1030
A
HOH
1031
3
HOH
HOH
1031
A
HOH
1032
3
HOH
HOH
1032
A
HOH
1033
3
HOH
HOH
1033
A
HOH
1034
3
HOH
HOH
1034
A
HOH
1035
3
HOH
HOH
1035
A
HOH
1036
3
HOH
HOH
1036
A
HOH
1037
3
HOH
HOH
1037
A
HOH
1038
3
HOH
HOH
1038
A
HOH
1039
3
HOH
HOH
1039
A
HOH
1040
3
HOH
HOH
1040
A
HOH
1041
3
HOH
HOH
1041
A
HOH
1042
3
HOH
HOH
1042
A
HOH
1043
3
HOH
HOH
1043
A
HOH
1044
3
HOH
HOH
1044
A
HOH
1045
3
HOH
HOH
1045
A
HOH
1046
3
HOH
HOH
1046
A
HOH
1047
3
HOH
HOH
1047
A
HOH
1048
3
HOH
HOH
1048
A
HOH
1049
3
HOH
HOH
1049
A
HOH
1051
3
HOH
HOH
1051
A
HOH
1053
3
HOH
HOH
1053
A
HOH
1054
3
HOH
HOH
1054
A
HOH
1055
3
HOH
HOH
1055
A
HOH
1056
3
HOH
HOH
1056
A
HOH
1057
3
HOH
HOH
1057
A
HOH
1058
3
HOH
HOH
1058
A
HOH
1059
3
HOH
HOH
1059
A
HOH
1060
3
HOH
HOH
1060
A
HOH
1061
3
HOH
HOH
1061
A
HOH
1062
3
HOH
HOH
1062
A
HOH
1063
3
HOH
HOH
1063
A
HOH
1064
3
HOH
HOH
1064
A
HOH
1065
3
HOH
HOH
1065
A
HOH
1066
3
HOH
HOH
1066
A
HOH
1067
3
HOH
HOH
1067
A
HOH
1068
3
HOH
HOH
1068
A
HOH
1069
3
HOH
HOH
1069
A
HOH
1070
3
HOH
HOH
1070
A
HOH
1071
3
HOH
HOH
1071
A
HOH
1072
3
HOH
HOH
1072
A
HOH
1073
3
HOH
HOH
1073
A
HOH
1075
3
HOH
HOH
1075
A
HOH
1076
3
HOH
HOH
1076
A
HOH
1077
3
HOH
HOH
1077
A
HOH
1078
3
HOH
HOH
1078
A
HOH
1079
3
HOH
HOH
1079
A
HOH
1080
3
HOH
HOH
1080
A
HOH
1081
3
HOH
HOH
1081
A
HOH
1082
3
HOH
HOH
1082
A
HOH
1083
3
HOH
HOH
1083
A
HOH
1084
3
HOH
HOH
1084
A
HOH
1085
3
HOH
HOH
1085
A
HOH
1086
3
HOH
HOH
1086
A
HOH
1087
3
HOH
HOH
1087
A
HOH
1089
3
HOH
HOH
1089
A
HOH
1090
3
HOH
HOH
1090
A
HOH
1091
3
HOH
HOH
1091
A
HOH
1093
3
HOH
HOH
1093
A
HOH
1094
3
HOH
HOH
1094
A
HOH
1095
3
HOH
HOH
1095
A
HOH
1096
3
HOH
HOH
1096
A
HOH
1097
3
HOH
HOH
1097
A
HOH
1098
3
HOH
HOH
1098
A
HOH
1099
3
HOH
HOH
1099
A
HOH
1100
3
HOH
HOH
1100
A
HOH
1101
3
HOH
HOH
1101
A
HOH
1102
3
HOH
HOH
1102
A
HOH
1103
3
HOH
HOH
1103
A
HOH
1104
3
HOH
HOH
1104
A
HOH
1105
3
HOH
HOH
1105
A
HOH
1106
3
HOH
HOH
1106
A
HOH
1107
3
HOH
HOH
1107
A
HOH
1108
3
HOH
HOH
1108
A
HOH
1109
3
HOH
HOH
1109
A
HOH
1110
3
HOH
HOH
1110
A
HOH
1111
3
HOH
HOH
1111
A
HOH
1112
3
HOH
HOH
1112
A
HOH
1113
3
HOH
HOH
1113
A
HOH
1114
3
HOH
HOH
1114
A
HOH
1115
3
HOH
HOH
1115
A
HOH
1117
3
HOH
HOH
1117
A
HOH
1118
3
HOH
HOH
1118
A
HOH
1119
3
HOH
HOH
1119
A
HOH
1120
3
HOH
HOH
1120
A
HOH
1121
3
HOH
HOH
1121
A
HOH
1123
3
HOH
HOH
1123
A
HOH
1125
3
HOH
HOH
1125
A
HOH
1127
3
HOH
HOH
1127
A
HOH
1128
3
HOH
HOH
1128
A
HOH
1129
3
HOH
HOH
1129
A
HOH
1131
3
HOH
HOH
1131
A
HOH
1132
3
HOH
HOH
1132
A
HOH
1133
3
HOH
HOH
1133
A
HOH
1137
3
HOH
HOH
1137
A
HOH
1138
3
HOH
HOH
1138
A
n
1
1
A
GLN
2
n
2
GLN
2
A
GLY
3
n
3
GLY
3
A
GLY
4
n
4
GLY
4
A
PHE
5
n
5
PHE
5
A
SER
6
n
6
SER
6
A
GLY
7
n
7
GLY
7
A
PRO
8
n
8
PRO
8
A
SER
9
n
9
SER
9
A
n
10
10
A
n
11
11
A
n
12
12
A
n
13
13
A
n
14
14
A
n
15
15
A
n
16
16
A
n
17
17
A
n
18
18
A
n
19
19
A
n
20
20
A
n
21
21
A
n
22
22
A
GLY
23
n
23
GLY
23
A
SER
24
n
24
SER
24
A
VAL
25
n
25
VAL
25
A
THR
26
n
26
THR
26
A
THR
27
n
27
THR
27
A
VAL
28
n
28
VAL
28
A
GLU
29
n
29
GLU
29
A
SER
30
n
30
SER
30
A
ALA
31
n
31
ALA
31
A
LYS
32
n
32
LYS
32
A
SER
33
n
33
SER
33
A
LEU
34
n
34
LEU
34
A
ARG
35
n
35
ARG
35
A
ASP
36
n
36
ASP
36
A
ASP
37
n
37
ASP
37
A
THR
38
n
38
THR
38
A
TRP
39
n
39
TRP
39
A
VAL
40
n
40
VAL
40
A
THR
41
n
41
THR
41
A
LEU
42
n
42
LEU
42
A
ARG
43
n
43
ARG
43
A
GLY
44
n
44
GLY
44
A
ASN
45
n
45
ASN
45
A
ILE
46
n
46
ILE
46
A
VAL
47
n
47
VAL
47
A
GLU
48
n
48
GLU
48
A
ARG
49
n
49
ARG
49
A
ILE
50
n
50
ILE
50
A
SER
51
n
51
SER
51
A
ASP
52
n
52
ASP
52
A
ASP
53
n
53
ASP
53
A
LEU
54
n
54
LEU
54
A
TYR
55
n
55
TYR
55
A
VAL
56
n
56
VAL
56
A
PHE
57
n
57
PHE
57
A
LYS
58
n
58
LYS
58
A
ASP
59
n
59
ASP
59
A
ALA
60
n
60
ALA
60
A
SER
61
n
61
SER
61
A
GLY
62
n
62
GLY
62
A
THR
63
n
63
THR
63
A
ILE
64
n
64
ILE
64
A
ASN
65
n
65
ASN
65
A
VAL
66
n
66
VAL
66
A
ASP
67
n
67
ASP
67
A
ILE
68
n
68
ILE
68
A
ASP
69
n
69
ASP
69
A
HIS
70
n
70
HIS
70
A
LYS
71
n
71
LYS
71
A
ARG
72
n
72
ARG
72
A
TRP
73
n
73
TRP
73
A
ASN
74
n
74
ASN
74
A
GLY
75
n
75
GLY
75
A
VAL
76
n
76
VAL
76
A
THR
77
n
77
THR
77
A
VAL
78
n
78
VAL
78
A
THR
79
n
79
THR
79
A
PRO
80
n
80
PRO
80
A
LYS
81
n
81
LYS
81
A
ASP
82
n
82
ASP
82
A
THR
83
n
83
THR
83
A
VAL
84
n
84
VAL
84
A
GLU
85
n
85
GLU
85
A
ILE
86
n
86
ILE
86
A
GLN
87
n
87
GLN
87
A
GLY
88
n
88
GLY
88
A
GLU
89
n
89
GLU
89
A
VAL
90
n
90
VAL
90
A
ASP
91
n
91
ASP
91
A
LYS
92
n
92
LYS
92
A
ASP
93
n
93
ASP
93
A
TRP
94
n
94
TRP
94
A
ASN
95
n
95
ASN
95
A
SER
96
n
96
SER
96
A
VAL
97
n
97
VAL
97
A
GLU
98
n
98
GLU
98
A
ILE
99
n
99
ILE
99
A
ASP
100
n
100
ASP
100
A
VAL
101
n
101
VAL
101
A
LYS
102
n
102
LYS
102
A
GLN
103
n
103
GLN
103
A
ILE
104
n
104
ILE
104
A
ARG
105
n
105
ARG
105
A
LYS
106
n
106
LYS
106
A
VAL
107
n
107
VAL
107
A
n
108
108
A
n
109
109
A
0.1307
0.1455
0.125
0.1393
0.2354
0.2517
866
1072
7.6
7.5
11470
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ASN
45
A
N
ASN
45
A
O
LYS
58
A
O
LYS
58
A
N
PHE
57
A
N
PHE
57
A
O
ILE
64
A
O
ILE
64
A
N
ASP
67
A
N
ASP
67
A
O
ILE
99
A
O
ILE
99
A
O
GLU
98
A
O
GLU
98
A
N
ASP
91
A
N
ASP
91
A
O
GLY
88
A
O
GLY
88
A
N
VAL
40
A
N
VAL
40
1
A
HOH
1023
C
HOH
1
A
GLU
1
A
GLU
1
1
Y
1
A
ALA
10
A
ALA
10
1
Y
1
A
THR
11
A
THR
11
1
Y
1
A
GLN
12
A
GLN
12
1
Y
1
A
SER
13
A
SER
13
1
Y
1
A
GLN
14
A
GLN
14
1
Y
1
A
ALA
15
A
ALA
15
1
Y
1
A
GLY
16
A
GLY
16
1
Y
1
A
GLY
17
A
GLY
17
1
Y
1
A
PHE
18
A
PHE
18
1
Y
1
A
GLN
19
A
GLN
19
1
Y
1
A
GLY
20
A
GLY
20
1
Y
1
A
PRO
21
A
PRO
21
1
Y
1
A
ASN
22
A
ASN
22
1
Y
1
A
ASN
108
A
ASN
108
1
Y
1
A
PRO
109
A
PRO
109
1
Y
1
A
A
OE1
NH1
GLU
ARG
85
105
2.11
B
1
11.38
1.80
110.60
121.98
A
A
A
N
CA
CB
ARG
ARG
ARG
35
35
35
A
N
1
-17.31
1.90
111.40
94.09
A
A
A
CB
CA
C
VAL
VAL
VAL
40
40
40
B
N
1
-14.87
1.60
110.90
96.03
A
A
A
CG1
CB
CG2
VAL
VAL
VAL
40
40
40
B
B
B
N
1
14.64
2.20
111.40
126.04
A
A
A
CG1
CB
CG2
ILE
ILE
ILE
46
46
46
B
N
1
13.61
2.00
110.40
124.01
A
A
A
CB
CA
C
HIS
HIS
HIS
70
70
70
B
N
1
-12.22
1.80
110.60
98.38
A
A
A
N
CA
CB
HIS
HIS
HIS
70
70
70
B
N
1
A
A
O
O
HOH
HOH
1055
1087
2.16
1_555
3_754
1
A
SER
51
-176.51
-166.76
25.8
-4.79
0.00
0.00
3.44
0.00
1.34
0.251
0.008
0.196
0.196
1.45
9.94
8321
1030
14208
14682
10416
7.0
89.0
RANDOM
973969.20
0.000
1
RESTRAINED
THROUGHOUT
0.0
SAD
ENGH AND HUBER
FLAT MODEL
53.6835
0.304212
0.20
0.16
10.00
0.14
0.13
12
0.00
854.50
1.45
9.94
125
910
5
0
780
0.023
2.5
26.3
2.16
2.50
1.50
3.69
2.00
4.65
2.00
6.51
2.50
0.3
0.038
0.273
1.50
64
887
10
6.7
59.3
18.0
1.450
27.400
1NNX
15321
0.000
0.048
1
17.7300
0.930
92.5
0.334
1.45
1.50
2.070
0.77
77.4
refinement
CNS
1.1
refinement
SHELXL-97
data reduction
HKL-2000
data scaling
HKL-2000
phasing
SOLVE
model building
SHELX
Structure of the hypothetical protein ygiW from E. coli.
1
N
N
2
N
N
3
N
N
A
THR
27
A
THR
27
HELX_P
A
LYS
32
A
LYS
32
1
1
6
A
ASP
69
A
ASP
69
HELX_P
A
TRP
73
A
TRP
73
5
2
5
STRUCTURAL GENOMICS, UNKNOWN FUNCTION
ygiW, Structural Genomics, hypothetical protein, OB-fold, Structure 2 Function Project, S2F, UNKNOWN FUNCTION
YGIW_ECOLI
UNP
1
22
P52083
EQGGFSGPSATQSQAGGFQGPNGSVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTP
KDTVEIQGEVDKDWNSVEIDVKQIRKVNP
22
130
1NNX
1
109
P52083
A
1
1
109
6
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
VAL
40
A
VAL
40
A
SER
51
A
SER
51
A
LEU
54
A
LEU
54
A
ASP
59
A
ASP
59
A
GLY
62
A
GLY
62
A
ASP
67
A
ASP
67
A
SER
96
A
SER
96
A
LYS
106
A
LYS
106
A
VAL
84
A
VAL
84
A
ASP
93
A
ASP
93
A
VAL
40
A
VAL
40
A
SER
51
A
SER
51
BINDING SITE FOR RESIDUE SO4 A 501
A
SO4
501
Software
9
A
GLU
29
A
GLU
29
9
1_555
A
LYS
32
A
LYS
32
9
3_755
A
LYS
32
A
LYS
32
9
1_555
A
GLY
62
A
GLY
62
9
1_555
A
THR
63
A
THR
63
9
1_555
A
HOH
1036
C
HOH
9
1_555
A
HOH
1039
C
HOH
9
1_555
A
HOH
1082
C
HOH
9
1_555
A
HOH
1112
C
HOH
9
1_555
20
C 2 2 21