0.008772
0.000000
0.000000
0.000000
0.008525
0.000000
0.000000
0.000000
0.009440
0.00000
0.00000
0.00000
Morais, M.C.
Kanamaru, S.
Badasso, M.O.
Koti, J.S.
Owen, B.L.
McMurray, C.T.
L Anderson, D.
Rossmann, M.G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
32
90.00
90.00
90.00
114.005
117.301
105.933
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
S
C
N
146
N
C
N
147
N
O
N
148
S
C
N
149
N
C
N
150
N
C
N
151
N
C
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
N
N
167
S
C
N
168
N
C
N
169
N
O
N
170
N
C
N
171
N
C
N
172
N
C
N
173
N
C
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
N
N
189
S
C
N
190
N
C
N
191
N
O
N
192
N
C
N
193
N
C
N
194
N
C
N
195
N
C
N
196
N
N
N
197
N
O
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
N
N
214
S
C
N
215
N
C
N
216
N
O
N
217
N
C
Y
218
N
C
Y
219
N
C
Y
220
N
C
Y
221
N
C
Y
222
N
C
Y
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
N
241
N
C
N
242
N
C
N
243
N
O
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
N
N
254
S
C
N
255
N
C
N
256
N
O
N
257
N
C
N
258
N
O
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
N
N
268
S
C
N
269
N
C
N
270
N
O
N
271
R
C
N
272
N
O
N
273
N
C
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
N
N
285
S
C
N
286
N
C
N
287
N
O
N
288
N
C
Y
289
N
C
Y
290
N
C
Y
291
N
C
Y
292
N
C
Y
293
N
C
Y
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
N
N
309
S
C
N
310
N
C
N
311
N
O
N
312
N
C
N
313
N
C
N
314
N
C
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
Y
214
N
doub
Y
215
N
sing
Y
216
N
sing
N
217
N
sing
Y
218
N
doub
N
219
N
sing
Y
220
N
doub
N
221
N
sing
Y
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
doub
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
doub
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
Y
283
N
doub
Y
284
N
sing
Y
285
N
sing
N
286
N
sing
Y
287
N
doub
N
288
N
sing
Y
289
N
doub
N
290
N
sing
Y
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
doub
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
10
572
576
10.1038/nsb939
12778115
Bacteriophage f29 scaffolding protein gp7 before and after prohead assembly
2003
10.2210/pdb1noh/pdb
pdb_00001noh
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2001-11-17
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
1.000
1.0
14-BM-C
APS
1.000
SYNCHROTRON
APS BEAMLINE 14-BM-C
11165.360
HEAD MORPHOGENESIS PROTEIN
4
man
polymer
Bacteriophage phi29 scaffolding protein gp7; LATE PROTEIN GP7; gene 7 protein'
no
no
PLKPEEHEDILNKLLDPELAQSERTEALQQLRVNYGSFVSEYNDLTKSHEKLAAEKDDLIVSNSKLFRQIGLTEKQEEDH
KKADISETITIEDLEAK
PLKPEEHEDILNKLLDPELAQSERTEALQQLRVNYGSFVSEYNDLTKSHEKLAAEKDDLIVSNSKLFRQIGLTEKQEEDH
KKADISETITIEDLEAK
A,B,C,D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Phi29-like viruses
Escherichia
sample
gp7
10756
Bacillus phage phi29
562
Escherichia coli
HMS174(DE3)
Plasmid
pARgp7
1
5.37
76.9
VAPOR DIFFUSION, HANGING DROP
6.5
14.4 % Peg 8000, 0.08 M sodium cacodylate, 0.16 M calcium acetate, 20 % glycerol, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Refinement description
1
0
2003-07-01
1
1
2008-04-29
1
2
2011-07-13
1
3
2023-08-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
gp7 scaffolding protein before prohead assembly
RCSB
Y
RCSB
2003-01-16
REL
REL
1NO4
PDB ENTRY 1NO4
PDB
experimental model
PRO
2
n
1
PRO
2
A
LEU
3
n
2
LEU
3
A
LYS
4
n
3
LYS
4
A
PRO
5
n
4
PRO
5
A
GLU
6
n
5
GLU
6
A
GLU
7
n
6
GLU
7
A
HIS
8
n
7
HIS
8
A
GLU
9
n
8
GLU
9
A
ASP
10
n
9
ASP
10
A
ILE
11
n
10
ILE
11
A
LEU
12
n
11
LEU
12
A
ASN
13
n
12
ASN
13
A
LYS
14
n
13
LYS
14
A
LEU
15
n
14
LEU
15
A
LEU
16
n
15
LEU
16
A
ASP
17
n
16
ASP
17
A
PRO
18
n
17
PRO
18
A
GLU
19
n
18
GLU
19
A
LEU
20
n
19
LEU
20
A
ALA
21
n
20
ALA
21
A
GLN
22
n
21
GLN
22
A
SER
23
n
22
SER
23
A
GLU
24
n
23
GLU
24
A
ARG
25
n
24
ARG
25
A
THR
26
n
25
THR
26
A
GLU
27
n
26
GLU
27
A
ALA
28
n
27
ALA
28
A
LEU
29
n
28
LEU
29
A
GLN
30
n
29
GLN
30
A
GLN
31
n
30
GLN
31
A
LEU
32
n
31
LEU
32
A
ARG
33
n
32
ARG
33
A
VAL
34
n
33
VAL
34
A
ASN
35
n
34
ASN
35
A
TYR
36
n
35
TYR
36
A
GLY
37
n
36
GLY
37
A
SER
38
n
37
SER
38
A
PHE
39
n
38
PHE
39
A
VAL
40
n
39
VAL
40
A
SER
41
n
40
SER
41
A
GLU
42
n
41
GLU
42
A
TYR
43
n
42
TYR
43
A
ASN
44
n
43
ASN
44
A
ASP
45
n
44
ASP
45
A
LEU
46
n
45
LEU
46
A
THR
47
n
46
THR
47
A
LYS
48
n
47
LYS
48
A
SER
49
n
48
SER
49
A
HIS
50
n
49
HIS
50
A
GLU
51
n
50
GLU
51
A
LYS
52
n
51
LYS
52
A
LEU
53
n
52
LEU
53
A
ALA
54
n
53
ALA
54
A
ALA
55
n
54
ALA
55
A
GLU
56
n
55
GLU
56
A
LYS
57
n
56
LYS
57
A
ASP
58
n
57
ASP
58
A
ASP
59
n
58
ASP
59
A
LEU
60
n
59
LEU
60
A
ILE
61
n
60
ILE
61
A
VAL
62
n
61
VAL
62
A
SER
63
n
62
SER
63
A
ASN
64
n
63
ASN
64
A
SER
65
n
64
SER
65
A
LYS
66
n
65
LYS
66
A
LEU
67
n
66
LEU
67
A
PHE
68
n
67
PHE
68
A
ARG
69
n
68
ARG
69
A
GLN
70
n
69
GLN
70
A
ILE
71
n
70
ILE
71
A
GLY
72
n
71
GLY
72
A
LEU
73
n
72
LEU
73
A
THR
74
n
73
THR
74
A
n
74
75
A
n
75
76
A
n
76
77
A
n
77
78
A
n
78
79
A
n
79
80
A
n
80
81
A
n
81
82
A
n
82
83
A
n
83
84
A
n
84
85
A
n
85
86
A
n
86
87
A
n
87
88
A
n
88
89
A
n
89
90
A
n
90
91
A
n
91
92
A
n
92
93
A
n
93
94
A
n
94
95
A
n
95
96
A
n
96
97
A
n
97
98
A
PRO
2
n
1
PRO
2
B
LEU
3
n
2
LEU
3
B
LYS
4
n
3
LYS
4
B
PRO
5
n
4
PRO
5
B
GLU
6
n
5
GLU
6
B
GLU
7
n
6
GLU
7
B
HIS
8
n
7
HIS
8
B
GLU
9
n
8
GLU
9
B
ASP
10
n
9
ASP
10
B
ILE
11
n
10
ILE
11
B
LEU
12
n
11
LEU
12
B
ASN
13
n
12
ASN
13
B
LYS
14
n
13
LYS
14
B
LEU
15
n
14
LEU
15
B
LEU
16
n
15
LEU
16
B
ASP
17
n
16
ASP
17
B
PRO
18
n
17
PRO
18
B
GLU
19
n
18
GLU
19
B
LEU
20
n
19
LEU
20
B
ALA
21
n
20
ALA
21
B
GLN
22
n
21
GLN
22
B
SER
23
n
22
SER
23
B
GLU
24
n
23
GLU
24
B
ARG
25
n
24
ARG
25
B
THR
26
n
25
THR
26
B
GLU
27
n
26
GLU
27
B
ALA
28
n
27
ALA
28
B
LEU
29
n
28
LEU
29
B
GLN
30
n
29
GLN
30
B
GLN
31
n
30
GLN
31
B
LEU
32
n
31
LEU
32
B
ARG
33
n
32
ARG
33
B
VAL
34
n
33
VAL
34
B
ASN
35
n
34
ASN
35
B
TYR
36
n
35
TYR
36
B
GLY
37
n
36
GLY
37
B
SER
38
n
37
SER
38
B
PHE
39
n
38
PHE
39
B
VAL
40
n
39
VAL
40
B
SER
41
n
40
SER
41
B
GLU
42
n
41
GLU
42
B
TYR
43
n
42
TYR
43
B
ASN
44
n
43
ASN
44
B
ASP
45
n
44
ASP
45
B
LEU
46
n
45
LEU
46
B
THR
47
n
46
THR
47
B
LYS
48
n
47
LYS
48
B
SER
49
n
48
SER
49
B
HIS
50
n
49
HIS
50
B
GLU
51
n
50
GLU
51
B
LYS
52
n
51
LYS
52
B
LEU
53
n
52
LEU
53
B
ALA
54
n
53
ALA
54
B
ALA
55
n
54
ALA
55
B
GLU
56
n
55
GLU
56
B
LYS
57
n
56
LYS
57
B
ASP
58
n
57
ASP
58
B
ASP
59
n
58
ASP
59
B
LEU
60
n
59
LEU
60
B
ILE
61
n
60
ILE
61
B
VAL
62
n
61
VAL
62
B
SER
63
n
62
SER
63
B
ASN
64
n
63
ASN
64
B
SER
65
n
64
SER
65
B
LYS
66
n
65
LYS
66
B
LEU
67
n
66
LEU
67
B
PHE
68
n
67
PHE
68
B
ARG
69
n
68
ARG
69
B
GLN
70
n
69
GLN
70
B
ILE
71
n
70
ILE
71
B
GLY
72
n
71
GLY
72
B
LEU
73
n
72
LEU
73
B
THR
74
n
73
THR
74
B
n
74
75
B
n
75
76
B
n
76
77
B
n
77
78
B
n
78
79
B
n
79
80
B
n
80
81
B
n
81
82
B
n
82
83
B
n
83
84
B
n
84
85
B
n
85
86
B
n
86
87
B
n
87
88
B
n
88
89
B
n
89
90
B
n
90
91
B
n
91
92
B
n
92
93
B
n
93
94
B
n
94
95
B
n
95
96
B
n
96
97
B
n
97
98
B
PRO
2
n
1
PRO
2
C
LEU
3
n
2
LEU
3
C
LYS
4
n
3
LYS
4
C
PRO
5
n
4
PRO
5
C
GLU
6
n
5
GLU
6
C
GLU
7
n
6
GLU
7
C
HIS
8
n
7
HIS
8
C
GLU
9
n
8
GLU
9
C
ASP
10
n
9
ASP
10
C
ILE
11
n
10
ILE
11
C
LEU
12
n
11
LEU
12
C
ASN
13
n
12
ASN
13
C
LYS
14
n
13
LYS
14
C
LEU
15
n
14
LEU
15
C
LEU
16
n
15
LEU
16
C
ASP
17
n
16
ASP
17
C
PRO
18
n
17
PRO
18
C
GLU
19
n
18
GLU
19
C
LEU
20
n
19
LEU
20
C
ALA
21
n
20
ALA
21
C
GLN
22
n
21
GLN
22
C
SER
23
n
22
SER
23
C
GLU
24
n
23
GLU
24
C
ARG
25
n
24
ARG
25
C
THR
26
n
25
THR
26
C
GLU
27
n
26
GLU
27
C
ALA
28
n
27
ALA
28
C
LEU
29
n
28
LEU
29
C
GLN
30
n
29
GLN
30
C
GLN
31
n
30
GLN
31
C
LEU
32
n
31
LEU
32
C
ARG
33
n
32
ARG
33
C
VAL
34
n
33
VAL
34
C
ASN
35
n
34
ASN
35
C
TYR
36
n
35
TYR
36
C
GLY
37
n
36
GLY
37
C
SER
38
n
37
SER
38
C
PHE
39
n
38
PHE
39
C
VAL
40
n
39
VAL
40
C
SER
41
n
40
SER
41
C
GLU
42
n
41
GLU
42
C
TYR
43
n
42
TYR
43
C
ASN
44
n
43
ASN
44
C
ASP
45
n
44
ASP
45
C
LEU
46
n
45
LEU
46
C
THR
47
n
46
THR
47
C
LYS
48
n
47
LYS
48
C
SER
49
n
48
SER
49
C
HIS
50
n
49
HIS
50
C
GLU
51
n
50
GLU
51
C
LYS
52
n
51
LYS
52
C
LEU
53
n
52
LEU
53
C
ALA
54
n
53
ALA
54
C
ALA
55
n
54
ALA
55
C
GLU
56
n
55
GLU
56
C
LYS
57
n
56
LYS
57
C
ASP
58
n
57
ASP
58
C
ASP
59
n
58
ASP
59
C
LEU
60
n
59
LEU
60
C
ILE
61
n
60
ILE
61
C
VAL
62
n
61
VAL
62
C
SER
63
n
62
SER
63
C
ASN
64
n
63
ASN
64
C
SER
65
n
64
SER
65
C
LYS
66
n
65
LYS
66
C
LEU
67
n
66
LEU
67
C
PHE
68
n
67
PHE
68
C
ARG
69
n
68
ARG
69
C
GLN
70
n
69
GLN
70
C
ILE
71
n
70
ILE
71
C
GLY
72
n
71
GLY
72
C
LEU
73
n
72
LEU
73
C
THR
74
n
73
THR
74
C
n
74
75
C
n
75
76
C
n
76
77
C
n
77
78
C
n
78
79
C
n
79
80
C
n
80
81
C
n
81
82
C
n
82
83
C
n
83
84
C
n
84
85
C
n
85
86
C
n
86
87
C
n
87
88
C
n
88
89
C
n
89
90
C
n
90
91
C
n
91
92
C
n
92
93
C
n
93
94
C
n
94
95
C
n
95
96
C
n
96
97
C
n
97
98
C
PRO
2
n
1
PRO
2
D
LEU
3
n
2
LEU
3
D
LYS
4
n
3
LYS
4
D
PRO
5
n
4
PRO
5
D
GLU
6
n
5
GLU
6
D
GLU
7
n
6
GLU
7
D
HIS
8
n
7
HIS
8
D
GLU
9
n
8
GLU
9
D
ASP
10
n
9
ASP
10
D
ILE
11
n
10
ILE
11
D
LEU
12
n
11
LEU
12
D
ASN
13
n
12
ASN
13
D
LYS
14
n
13
LYS
14
D
LEU
15
n
14
LEU
15
D
LEU
16
n
15
LEU
16
D
ASP
17
n
16
ASP
17
D
PRO
18
n
17
PRO
18
D
GLU
19
n
18
GLU
19
D
LEU
20
n
19
LEU
20
D
ALA
21
n
20
ALA
21
D
GLN
22
n
21
GLN
22
D
SER
23
n
22
SER
23
D
GLU
24
n
23
GLU
24
D
ARG
25
n
24
ARG
25
D
THR
26
n
25
THR
26
D
GLU
27
n
26
GLU
27
D
ALA
28
n
27
ALA
28
D
LEU
29
n
28
LEU
29
D
GLN
30
n
29
GLN
30
D
GLN
31
n
30
GLN
31
D
LEU
32
n
31
LEU
32
D
ARG
33
n
32
ARG
33
D
VAL
34
n
33
VAL
34
D
ASN
35
n
34
ASN
35
D
TYR
36
n
35
TYR
36
D
GLY
37
n
36
GLY
37
D
SER
38
n
37
SER
38
D
PHE
39
n
38
PHE
39
D
VAL
40
n
39
VAL
40
D
SER
41
n
40
SER
41
D
GLU
42
n
41
GLU
42
D
TYR
43
n
42
TYR
43
D
ASN
44
n
43
ASN
44
D
ASP
45
n
44
ASP
45
D
LEU
46
n
45
LEU
46
D
THR
47
n
46
THR
47
D
LYS
48
n
47
LYS
48
D
SER
49
n
48
SER
49
D
HIS
50
n
49
HIS
50
D
GLU
51
n
50
GLU
51
D
LYS
52
n
51
LYS
52
D
LEU
53
n
52
LEU
53
D
ALA
54
n
53
ALA
54
D
ALA
55
n
54
ALA
55
D
GLU
56
n
55
GLU
56
D
LYS
57
n
56
LYS
57
D
ASP
58
n
57
ASP
58
D
ASP
59
n
58
ASP
59
D
LEU
60
n
59
LEU
60
D
ILE
61
n
60
ILE
61
D
VAL
62
n
61
VAL
62
D
SER
63
n
62
SER
63
D
ASN
64
n
63
ASN
64
D
SER
65
n
64
SER
65
D
LYS
66
n
65
LYS
66
D
LEU
67
n
66
LEU
67
D
PHE
68
n
67
PHE
68
D
ARG
69
n
68
ARG
69
D
GLN
70
n
69
GLN
70
D
ILE
71
n
70
ILE
71
D
GLY
72
n
71
GLY
72
D
LEU
73
n
72
LEU
73
D
THR
74
n
73
THR
74
D
n
74
75
D
n
75
76
D
n
76
77
D
n
77
78
D
n
78
79
D
n
79
80
D
n
80
81
D
n
81
82
D
n
82
83
D
n
83
84
D
n
84
85
D
n
85
86
D
n
86
87
D
n
87
88
D
n
88
89
D
n
89
90
D
n
90
91
D
n
91
92
D
n
92
93
D
n
93
94
D
n
94
95
D
n
95
96
D
n
96
97
D
n
97
98
D
author_and_software_defined_assembly
PISA
2
dimeric
author_and_software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PISA
4
tetrameric
3720
-28
9510
3720
-27
9350
8980
-65
17330
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
GLU
75
A
GLU
74
1
Y
1
A
LYS
76
A
LYS
75
1
Y
1
A
GLN
77
A
GLN
76
1
Y
1
A
GLU
78
A
GLU
77
1
Y
1
A
GLU
79
A
GLU
78
1
Y
1
A
ASP
80
A
ASP
79
1
Y
1
A
HIS
81
A
HIS
80
1
Y
1
A
LYS
82
A
LYS
81
1
Y
1
A
LYS
83
A
LYS
82
1
Y
1
A
ALA
84
A
ALA
83
1
Y
1
A
ASP
85
A
ASP
84
1
Y
1
A
ILE
86
A
ILE
85
1
Y
1
A
SER
87
A
SER
86
1
Y
1
A
GLU
88
A
GLU
87
1
Y
1
A
THR
89
A
THR
88
1
Y
1
A
ILE
90
A
ILE
89
1
Y
1
A
THR
91
A
THR
90
1
Y
1
A
ILE
92
A
ILE
91
1
Y
1
A
GLU
93
A
GLU
92
1
Y
1
A
ASP
94
A
ASP
93
1
Y
1
A
LEU
95
A
LEU
94
1
Y
1
A
GLU
96
A
GLU
95
1
Y
1
A
ALA
97
A
ALA
96
1
Y
1
A
LYS
98
A
LYS
97
1
Y
1
B
GLU
75
B
GLU
74
1
Y
1
B
LYS
76
B
LYS
75
1
Y
1
B
GLN
77
B
GLN
76
1
Y
1
B
GLU
78
B
GLU
77
1
Y
1
B
GLU
79
B
GLU
78
1
Y
1
B
ASP
80
B
ASP
79
1
Y
1
B
HIS
81
B
HIS
80
1
Y
1
B
LYS
82
B
LYS
81
1
Y
1
B
LYS
83
B
LYS
82
1
Y
1
B
ALA
84
B
ALA
83
1
Y
1
B
ASP
85
B
ASP
84
1
Y
1
B
ILE
86
B
ILE
85
1
Y
1
B
SER
87
B
SER
86
1
Y
1
B
GLU
88
B
GLU
87
1
Y
1
B
THR
89
B
THR
88
1
Y
1
B
ILE
90
B
ILE
89
1
Y
1
B
THR
91
B
THR
90
1
Y
1
B
ILE
92
B
ILE
91
1
Y
1
B
GLU
93
B
GLU
92
1
Y
1
B
ASP
94
B
ASP
93
1
Y
1
B
LEU
95
B
LEU
94
1
Y
1
B
GLU
96
B
GLU
95
1
Y
1
B
ALA
97
B
ALA
96
1
Y
1
B
LYS
98
B
LYS
97
1
Y
1
C
GLU
75
C
GLU
74
1
Y
1
C
LYS
76
C
LYS
75
1
Y
1
C
GLN
77
C
GLN
76
1
Y
1
C
GLU
78
C
GLU
77
1
Y
1
C
GLU
79
C
GLU
78
1
Y
1
C
ASP
80
C
ASP
79
1
Y
1
C
HIS
81
C
HIS
80
1
Y
1
C
LYS
82
C
LYS
81
1
Y
1
C
LYS
83
C
LYS
82
1
Y
1
C
ALA
84
C
ALA
83
1
Y
1
C
ASP
85
C
ASP
84
1
Y
1
C
ILE
86
C
ILE
85
1
Y
1
C
SER
87
C
SER
86
1
Y
1
C
GLU
88
C
GLU
87
1
Y
1
C
THR
89
C
THR
88
1
Y
1
C
ILE
90
C
ILE
89
1
Y
1
C
THR
91
C
THR
90
1
Y
1
C
ILE
92
C
ILE
91
1
Y
1
C
GLU
93
C
GLU
92
1
Y
1
C
ASP
94
C
ASP
93
1
Y
1
C
LEU
95
C
LEU
94
1
Y
1
C
GLU
96
C
GLU
95
1
Y
1
C
ALA
97
C
ALA
96
1
Y
1
C
LYS
98
C
LYS
97
1
Y
1
D
GLU
75
D
GLU
74
1
Y
1
D
LYS
76
D
LYS
75
1
Y
1
D
GLN
77
D
GLN
76
1
Y
1
D
GLU
78
D
GLU
77
1
Y
1
D
GLU
79
D
GLU
78
1
Y
1
D
ASP
80
D
ASP
79
1
Y
1
D
HIS
81
D
HIS
80
1
Y
1
D
LYS
82
D
LYS
81
1
Y
1
D
LYS
83
D
LYS
82
1
Y
1
D
ALA
84
D
ALA
83
1
Y
1
D
ASP
85
D
ASP
84
1
Y
1
D
ILE
86
D
ILE
85
1
Y
1
D
SER
87
D
SER
86
1
Y
1
D
GLU
88
D
GLU
87
1
Y
1
D
THR
89
D
THR
88
1
Y
1
D
ILE
90
D
ILE
89
1
Y
1
D
THR
91
D
THR
90
1
Y
1
D
ILE
92
D
ILE
91
1
Y
1
D
GLU
93
D
GLU
92
1
Y
1
D
ASP
94
D
ASP
93
1
Y
1
D
LEU
95
D
LEU
94
1
Y
1
D
GLU
96
D
GLU
95
1
Y
1
D
ALA
97
D
ALA
96
1
Y
1
D
LYS
98
D
LYS
97
1
Y
1
A
ALA
21
-46.21
161.67
1
B
LEU
20
-27.06
136.87
1
B
SER
38
-49.87
-77.28
1
B
PHE
39
-27.07
-60.58
1
B
PHE
68
-54.30
-70.52
PROTEIN_REP.PARAM
PROTEIN.TOP
54.0
-3.63
0.00
0.00
-11.24
0.00
14.87
0.29
0.006
0.254
0.258
0.254
2.80
36.15
2582
27757
27757
9.3
82.1
RANDOM
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1NO4
FLAT MODEL
38.9522
0.344448
0.51
0.46
5.0
0.81
0.84
2.80
36.15
0
2356
0
0
2356
0.008
1.2
18.1
0.69
0.397
0.021
0.402
2.98
368
3276
6
10.1
65.0
33.1
2.80
36.15
1NOH
27757
27757
0.0
0.0
0.091
1
11.5
14.4
98.2
2.80
2.90
2.4
1568
0.473
95.9
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
CNS
1.1
The structure of bacteriophage phi29 scaffolding protein gp7 after prohead assembly
1
N
N
1
N
N
1
N
N
1
N
N
The biological unit is a dimeric coiled-coil. There are two such dimers
per asymmetric unit.
A
LYS
4
A
LYS
3
HELX_P
A
LEU
15
A
LEU
14
1
1
12
A
ALA
21
A
ALA
20
HELX_P
A
THR
74
A
THR
73
1
2
54
B
LYS
4
B
LYS
3
HELX_P
B
LEU
15
B
LEU
14
1
3
12
B
ALA
21
B
ALA
20
HELX_P
B
THR
74
B
THR
73
1
4
54
C
LYS
4
C
LYS
3
HELX_P
C
ASP
17
C
ASP
16
1
5
14
C
ALA
21
C
ALA
20
HELX_P
C
THR
74
C
THR
73
1
6
54
D
LYS
4
D
LYS
3
HELX_P
D
LEU
16
D
LEU
15
1
7
13
D
ALA
21
D
ALA
20
HELX_P
D
THR
74
D
THR
73
1
8
54
VIRAL PROTEIN
coiled-coil, Viral protein
VG7_BPPH2
UNP
1
1
P13848
PLKPEEHEDILNKLLDPELAQSERTEALQQLRVNYGSFVSEYNDLTKSHEKLAAEKDDLIVSNSKLFRQIGLTDKQEEDH
KKADISETITIEDLEAK
1
97
1NOH
2
98
P13848
A
1
1
97
1
97
1NOH
2
98
P13848
B
1
1
97
1
97
1NOH
2
98
P13848
C
1
1
97
1
97
1NOH
2
98
P13848
D
1
1
97
1
ASP
conflict
GLU
75
1NOH
A
P13848
UNP
74
74
2
ASP
conflict
GLU
75
1NOH
B
P13848
UNP
74
74
3
ASP
conflict
GLU
75
1NOH
C
P13848
UNP
74
74
4
ASP
conflict
GLU
75
1NOH
D
P13848
UNP
74
74
20
orthorhombic
C 2 2 21