0.020079
0.000000
0.000000
0.000000
0.009549
0.000000
0.000000
0.000000
0.005157
0.00000
0.00000
0.00000
Davies, D.R.
Interthal, H.
Champoux, J.J.
Hol, W.G.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
49.803
104.719
193.924
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
O4 V -3
114.939
VANADATE ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
Y
136
N
N
Y
137
N
C
Y
138
N
N
Y
139
N
C
N
140
N
C
N
141
N
O
N
142
N
N
N
143
N
C
N
144
N
N
N
145
N
N
Y
146
N
C
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
O
N
162
N
P
N
163
N
O
N
164
N
O
N
165
N
O
N
166
N
C
N
167
R
C
N
168
N
O
N
169
S
C
N
170
N
O
N
171
N
C
N
172
R
C
N
173
N
N
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
O
N
179
N
C
N
180
N
C
N
181
N
C
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
N
N
198
S
C
N
199
N
C
N
200
N
O
N
201
N
C
N
202
N
C
N
203
N
C
N
204
N
O
N
205
N
N
N
206
N
O
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
O
N
225
N
O
N
226
N
O
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
N
C
N
238
N
C
N
239
N
O
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
N
N
247
S
C
N
248
N
C
N
249
N
O
N
250
N
C
Y
251
N
C
Y
252
N
N
Y
253
N
C
Y
254
N
C
Y
255
N
N
N
256
N
O
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
O
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
S
C
N
275
N
C
N
276
N
C
N
277
N
C
N
278
N
O
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
N
N
293
S
C
N
294
N
C
N
295
N
O
N
296
N
C
N
297
N
C
N
298
N
C
N
299
N
C
N
300
N
O
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
N
N
315
S
C
N
316
N
C
N
317
N
O
N
318
N
C
N
319
N
C
N
320
N
C
N
321
N
C
N
322
N
N
N
323
N
O
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
N
C
N
344
N
C
N
345
N
S
N
346
N
C
N
347
N
O
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
N
N
360
S
C
N
361
N
C
N
362
N
O
N
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
N
370
N
O
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
N
N
383
S
C
N
384
N
C
N
385
N
O
N
386
N
C
N
387
N
C
N
388
N
C
N
389
N
O
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
N
N
400
S
C
N
401
N
C
N
402
N
O
N
403
N
C
N
404
N
O
N
405
N
O
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
N
N
414
S
C
N
415
N
C
N
416
N
O
N
417
R
C
N
418
N
O
N
419
N
C
N
420
N
O
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
N
N
431
S
C
N
432
N
C
N
433
N
O
N
434
N
C
Y
435
N
C
Y
436
N
C
Y
437
N
C
Y
438
N
N
Y
439
N
C
Y
440
N
C
Y
441
N
C
Y
442
N
C
Y
443
N
C
N
444
N
O
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
N
N
458
S
C
N
459
N
C
N
460
N
O
N
461
N
C
Y
462
N
C
Y
463
N
C
Y
464
N
C
Y
465
N
C
Y
466
N
C
Y
467
N
C
N
468
N
O
N
469
N
O
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
N
N
482
S
C
N
483
N
C
N
484
N
O
N
485
N
C
N
486
N
C
N
487
N
C
N
488
N
O
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
V
N
501
N
O
N
502
N
O
N
503
N
O
N
504
N
O
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
Y
144
N
sing
Y
145
N
sing
Y
146
N
doub
N
147
N
sing
Y
148
N
sing
N
149
N
sing
Y
150
N
doub
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
doub
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
doub
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
Y
254
N
sing
Y
255
N
doub
Y
256
N
doub
N
257
N
sing
Y
258
N
sing
N
259
N
sing
Y
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
Y
362
N
doub
Y
363
N
sing
Y
364
N
sing
N
365
N
sing
Y
366
N
doub
N
367
N
sing
Y
368
N
doub
N
369
N
sing
Y
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
doub
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
doub
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
doub
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
doub
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
Y
431
N
doub
Y
432
N
sing
Y
433
N
sing
N
434
N
sing
Y
435
N
doub
Y
436
N
sing
Y
437
N
sing
N
438
N
sing
Y
439
N
sing
Y
440
N
doub
N
441
N
sing
Y
442
N
doub
N
443
N
sing
Y
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
doub
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
Y
459
N
doub
Y
460
N
sing
Y
461
N
sing
N
462
N
sing
Y
463
N
doub
N
464
N
sing
Y
465
N
doub
N
466
N
sing
Y
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
doub
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
doub
N
491
N
sing
N
492
N
sing
N
493
N
sing
UK
Chem.Biol.
CBOLE2
2050
1074-5521
10
139
147
10.1016/S1074-5521(03)00021-8
12618186
Crystal structure of a transition state mimic for Tdp1 assembled from vanadate, DNA, and a topoisomerase I-derived peptide
2003
UK
Structure
STRUE6
2005
0969-2126
10
237
248
10.1016/S0969-2126(02)00707-4
The crystal structure of human tyrosyl-DNA phosphodiesterase, Tdp1
2002
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
324
917
932
10.1016/S0022-2836(02)01154-3
Insights into substrate binding and catalytic mechanism of human tyrosyl-DNA phosphodiesterase (Tdp1) from vanadate- and tungstate-inhibited structures
2002
10.2210/pdb1nop/pdb
pdb_00001nop
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2002-08-16
CUSTOM-MADE
SINGLE WAVELENGTH
M
x-ray
1
1.0332
1.0
19-BM
APS
1.0332
SYNCHROTRON
APS BEAMLINE 19-BM
1848.253
5'-D(*AP*GP*AP*GP*TP*T)-3'
2
syn
polymer
54731.195
tyrosyl-DNA phosphodiesterase 1
residues 149-608
D322N, M328T, F548L
2
man
polymer
1020.184
topoisomerase I-derived peptide
residues 720-727
1
syn
polymer
114.939
VANADATE ION
2
syn
non-polymer
18.015
water
96
nat
water
Tdp1
no
no
(DA)(DG)(DA)(DG)(DT)(DT)
AGAGTT
D,F
polydeoxyribonucleotide
no
no
MGSSHHHHHHSSGLVPRGSHMLEDPGEGQDIWDMLDKGNPFQFYLTRVSGVKPKYNSGALHIKDILSPLFGTLVSSAQFN
YCFDVDWLVKQYPPEFRKKPILLVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSN
LIHADWHQKTQGIWLSPLYPRIADGTHKSGESPTHFKANLISYLTAYNAPSLKEWIDVIHKHDLSETNVYLIGSTPGRFQ
GSQKDNWGHFRLKKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKESMLTLGKESKTPGKSSVPLYLIYPS
VENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKIAWFLVTSANLSKAAWG
ALEKNGTQLMIRSYELGVLFLPSALGLDSFKVKQKFFAGSQEPMATFPVPYDLPPELYGSKDRPWIWNIPYVKAPDTHGN
MWVPS
MGSSHHHHHHSSGLVPRGSHMLEDPGEGQDIWDMLDKGNPFQFYLTRVSGVKPKYNSGALHIKDILSPLFGTLVSSAQFN
YCFDVDWLVKQYPPEFRKKPILLVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSN
LIHADWHQKTQGIWLSPLYPRIADGTHKSGESPTHFKANLISYLTAYNAPSLKEWIDVIHKHDLSETNVYLIGSTPGRFQ
GSQKDNWGHFRLKKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKESMLTLGKESKTPGKSSVPLYLIYPS
VENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKIAWFLVTSANLSKAAWG
ALEKNGTQLMIRSYELGVLFLPSALGLDSFKVKQKFFAGSQEPMATFPVPYDLPPELYGSKDRPWIWNIPYVKAPDTHGN
MWVPS
A,B
polypeptide(L)
no
no
KLNYLDPR
KLNYLDPR
C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
Escherichia coli
sample
9606
Homo sapiens
511693
Escherichia coli BL21
BL21
Plasmid
pET15b
1
2.21
44.36
VAPOR DIFFUSION, SITTING DROP
7.8
PEG 3000, sodium chloride, spermine, HEPES, pH 7.8, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
PEG 3000
1
NaCl
1
spermine
1
HEPES
1
PEG 3000
2
NaCl
2
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Data collection
1
0
2003-03-11
1
1
2008-05-02
1
2
2011-07-13
1
3
2021-10-27
1
4
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Crystal Structure Of Human Tyrosyl-DNA Phosphodiesterase (Tdp1)
Crystal Structure Of A Human Tyrosyl-DNA Phosphodiesterase (Tdp1)-Tungstate Complex
Crystal Structure Of A Human Tyrosyl-DNA Phosphodiesterase (Tdp1)-Vanadate Complex
COMPOUND
THE STRUCTURE IS A MIMIC OF THE TRANSITION
STATE FOR HYDROLYSIS OF THE TDP1 SUBSTRATE,
A COVALENT TOPOISOMERASE I-DNA COMPLEX.
RCSB
Y
RCSB
2003-01-16
REL
REL
VO4
VANADATE ION
HOH
water
This sequence is derived from a sequence known to be a target for topoisomerase I
sample
This sequence occurs naturally in human topoisomerase I. This sequence includes the catalytic tyrosine residue that becomes transiently covalently attatched to the 3' end of DNA
sample
VO4
699
4
VO4
VO4
699
A
VO4
699
4
VO4
VO4
699
B
HOH
907
5
HOH
HOH
907
D
HOH
728
5
HOH
HOH
728
A
HOH
905
5
HOH
HOH
905
A
HOH
906
5
HOH
HOH
906
A
HOH
908
5
HOH
HOH
908
A
HOH
909
5
HOH
HOH
909
A
HOH
910
5
HOH
HOH
910
A
HOH
911
5
HOH
HOH
911
A
HOH
912
5
HOH
HOH
912
A
HOH
913
5
HOH
HOH
913
A
HOH
914
5
HOH
HOH
914
A
HOH
915
5
HOH
HOH
915
A
HOH
916
5
HOH
HOH
916
A
HOH
917
5
HOH
HOH
917
A
HOH
918
5
HOH
HOH
918
A
HOH
919
5
HOH
HOH
919
A
HOH
920
5
HOH
HOH
920
A
HOH
921
5
HOH
HOH
921
A
HOH
922
5
HOH
HOH
922
A
HOH
923
5
HOH
HOH
923
A
HOH
924
5
HOH
HOH
924
A
HOH
925
5
HOH
HOH
925
A
HOH
926
5
HOH
HOH
926
A
HOH
927
5
HOH
HOH
927
A
HOH
928
5
HOH
HOH
928
A
HOH
929
5
HOH
HOH
929
A
HOH
930
5
HOH
HOH
930
A
HOH
931
5
HOH
HOH
931
A
HOH
932
5
HOH
HOH
932
A
HOH
933
5
HOH
HOH
933
A
HOH
934
5
HOH
HOH
934
A
HOH
935
5
HOH
HOH
935
A
HOH
937
5
HOH
HOH
937
A
HOH
938
5
HOH
HOH
938
A
HOH
939
5
HOH
HOH
939
A
HOH
940
5
HOH
HOH
940
A
HOH
941
5
HOH
HOH
941
A
HOH
942
5
HOH
HOH
942
A
HOH
943
5
HOH
HOH
943
A
HOH
944
5
HOH
HOH
944
A
HOH
945
5
HOH
HOH
945
A
HOH
946
5
HOH
HOH
946
A
HOH
947
5
HOH
HOH
947
A
HOH
948
5
HOH
HOH
948
A
HOH
949
5
HOH
HOH
949
A
HOH
936
5
HOH
HOH
936
B
HOH
951
5
HOH
HOH
951
B
HOH
952
5
HOH
HOH
952
B
HOH
953
5
HOH
HOH
953
B
HOH
954
5
HOH
HOH
954
B
HOH
955
5
HOH
HOH
955
B
HOH
956
5
HOH
HOH
956
B
HOH
957
5
HOH
HOH
957
B
HOH
958
5
HOH
HOH
958
B
HOH
959
5
HOH
HOH
959
B
HOH
960
5
HOH
HOH
960
B
HOH
961
5
HOH
HOH
961
B
HOH
962
5
HOH
HOH
962
B
HOH
963
5
HOH
HOH
963
B
HOH
964
5
HOH
HOH
964
B
HOH
965
5
HOH
HOH
965
B
HOH
966
5
HOH
HOH
966
B
HOH
967
5
HOH
HOH
967
B
HOH
968
5
HOH
HOH
968
B
HOH
969
5
HOH
HOH
969
B
HOH
970
5
HOH
HOH
970
B
HOH
971
5
HOH
HOH
971
B
HOH
972
5
HOH
HOH
972
B
HOH
973
5
HOH
HOH
973
B
HOH
974
5
HOH
HOH
974
B
HOH
975
5
HOH
HOH
975
B
HOH
976
5
HOH
HOH
976
B
HOH
977
5
HOH
HOH
977
B
HOH
978
5
HOH
HOH
978
B
HOH
979
5
HOH
HOH
979
B
HOH
980
5
HOH
HOH
980
B
HOH
981
5
HOH
HOH
981
B
HOH
982
5
HOH
HOH
982
B
HOH
983
5
HOH
HOH
983
B
HOH
984
5
HOH
HOH
984
B
HOH
985
5
HOH
HOH
985
B
HOH
986
5
HOH
HOH
986
B
HOH
987
5
HOH
HOH
987
B
HOH
988
5
HOH
HOH
988
B
HOH
989
5
HOH
HOH
989
B
HOH
990
5
HOH
HOH
990
B
HOH
991
5
HOH
HOH
991
B
HOH
992
5
HOH
HOH
992
B
HOH
993
5
HOH
HOH
993
B
HOH
994
5
HOH
HOH
994
B
HOH
995
5
HOH
HOH
995
B
HOH
996
5
HOH
HOH
996
B
HOH
997
5
HOH
HOH
997
B
HOH
998
5
HOH
HOH
998
B
HOH
999
5
HOH
HOH
999
B
HOH
904
5
HOH
HOH
904
C
n
1
801
D
n
2
802
D
n
3
803
D
G
804
n
4
DG
804
D
T
805
n
5
DT
805
D
T
806
n
6
DT
806
D
n
1
801
F
n
2
802
F
n
3
803
F
n
4
804
F
n
5
805
F
T
806
n
6
DT
806
F
n
1
124
A
n
2
125
A
n
3
126
A
n
4
127
A
n
5
128
A
n
6
129
A
n
7
130
A
n
8
131
A
n
9
132
A
n
10
133
A
n
11
134
A
n
12
135
A
n
13
136
A
n
14
137
A
n
15
138
A
n
16
139
A
n
17
140
A
n
18
141
A
n
19
142
A
n
20
143
A
n
21
144
A
n
22
145
A
n
23
146
A
n
24
147
A
n
25
148
A
n
26
149
A
n
27
150
A
n
28
151
A
n
29
152
A
n
30
153
A
n
31
154
A
n
32
155
A
n
33
156
A
n
34
157
A
n
35
158
A
n
36
159
A
n
37
160
A
n
38
161
A
ASN
162
n
39
ASN
162
A
PRO
163
n
40
PRO
163
A
PHE
164
n
41
PHE
164
A
GLN
165
n
42
GLN
165
A
PHE
166
n
43
PHE
166
A
TYR
167
n
44
TYR
167
A
LEU
168
n
45
LEU
168
A
THR
169
n
46
THR
169
A
ARG
170
n
47
ARG
170
A
VAL
171
n
48
VAL
171
A
SER
172
n
49
SER
172
A
GLY
173
n
50
GLY
173
A
VAL
174
n
51
VAL
174
A
LYS
175
n
52
LYS
175
A
PRO
176
n
53
PRO
176
A
LYS
177
n
54
LYS
177
A
TYR
178
n
55
TYR
178
A
ASN
179
n
56
ASN
179
A
SER
180
n
57
SER
180
A
GLY
181
n
58
GLY
181
A
ALA
182
n
59
ALA
182
A
LEU
183
n
60
LEU
183
A
HIS
184
n
61
HIS
184
A
ILE
185
n
62
ILE
185
A
LYS
186
n
63
LYS
186
A
ASP
187
n
64
ASP
187
A
ILE
188
n
65
ILE
188
A
LEU
189
n
66
LEU
189
A
SER
190
n
67
SER
190
A
PRO
191
n
68
PRO
191
A
LEU
192
n
69
LEU
192
A
PHE
193
n
70
PHE
193
A
GLY
194
n
71
GLY
194
A
THR
195
n
72
THR
195
A
LEU
196
n
73
LEU
196
A
VAL
197
n
74
VAL
197
A
SER
198
n
75
SER
198
A
SER
199
n
76
SER
199
A
ALA
200
n
77
ALA
200
A
GLN
201
n
78
GLN
201
A
PHE
202
n
79
PHE
202
A
ASN
203
n
80
ASN
203
A
TYR
204
n
81
TYR
204
A
CYS
205
n
82
CYS
205
A
PHE
206
n
83
PHE
206
A
ASP
207
n
84
ASP
207
A
VAL
208
n
85
VAL
208
A
ASP
209
n
86
ASP
209
A
TRP
210
n
87
TRP
210
A
LEU
211
n
88
LEU
211
A
VAL
212
n
89
VAL
212
A
LYS
213
n
90
LYS
213
A
GLN
214
n
91
GLN
214
A
TYR
215
n
92
TYR
215
A
PRO
216
n
93
PRO
216
A
PRO
217
n
94
PRO
217
A
GLU
218
n
95
GLU
218
A
PHE
219
n
96
PHE
219
A
ARG
220
n
97
ARG
220
A
LYS
221
n
98
LYS
221
A
LYS
222
n
99
LYS
222
A
PRO
223
n
100
PRO
223
A
ILE
224
n
101
ILE
224
A
LEU
225
n
102
LEU
225
A
LEU
226
n
103
LEU
226
A
VAL
227
n
104
VAL
227
A
HIS
228
n
105
HIS
228
A
GLY
229
n
106
GLY
229
A
ASP
230
n
107
ASP
230
A
LYS
231
n
108
LYS
231
A
ARG
232
n
109
ARG
232
A
GLU
233
n
110
GLU
233
A
ALA
234
n
111
ALA
234
A
LYS
235
n
112
LYS
235
A
ALA
236
n
113
ALA
236
A
HIS
237
n
114
HIS
237
A
LEU
238
n
115
LEU
238
A
HIS
239
n
116
HIS
239
A
ALA
240
n
117
ALA
240
A
GLN
241
n
118
GLN
241
A
ALA
242
n
119
ALA
242
A
LYS
243
n
120
LYS
243
A
PRO
244
n
121
PRO
244
A
TYR
245
n
122
TYR
245
A
ALA
246
n
123
GLU
246
A
ASN
247
n
124
ASN
247
A
ILE
248
n
125
ILE
248
A
SER
249
n
126
SER
249
A
LEU
250
n
127
LEU
250
A
CYS
251
n
128
CYS
251
A
GLN
252
n
129
GLN
252
A
ALA
253
n
130
ALA
253
A
LYS
254
n
131
LYS
254
A
LEU
255
n
132
LEU
255
A
ASP
256
n
133
ASP
256
A
ILE
257
n
134
ILE
257
A
ALA
258
n
135
ALA
258
A
PHE
259
n
136
PHE
259
A
GLY
260
n
137
GLY
260
A
THR
261
n
138
THR
261
A
HIS
262
n
139
HIS
262
A
HIS
263
n
140
HIS
263
A
THR
264
n
141
THR
264
A
LYS
265
n
142
LYS
265
A
MET
266
n
143
MET
266
A
MET
267
n
144
MET
267
A
LEU
268
n
145
LEU
268
A
LEU
269
n
146
LEU
269
A
LEU
270
n
147
LEU
270
A
TYR
271
n
148
TYR
271
A
GLU
272
n
149
GLU
272
A
GLU
273
n
150
GLU
273
A
GLY
274
n
151
GLY
274
A
LEU
275
n
152
LEU
275
A
ARG
276
n
153
ARG
276
A
VAL
277
n
154
VAL
277
A
VAL
278
n
155
VAL
278
A
ILE
279
n
156
ILE
279
A
HIS
280
n
157
HIS
280
A
THR
281
n
158
THR
281
A
SER
282
n
159
SER
282
A
ASN
283
n
160
ASN
283
A
LEU
284
n
161
LEU
284
A
ILE
285
n
162
ILE
285
A
HIS
286
n
163
HIS
286
A
ALA
287
n
164
ALA
287
A
ASP
288
n
165
ASP
288
A
TRP
289
n
166
TRP
289
A
HIS
290
n
167
HIS
290
A
GLN
291
n
168
GLN
291
A
LYS
292
n
169
LYS
292
A
THR
293
n
170
THR
293
A
GLN
294
n
171
GLN
294
A
GLY
295
n
172
GLY
295
A
ILE
296
n
173
ILE
296
A
TRP
297
n
174
TRP
297
A
LEU
298
n
175
LEU
298
A
SER
299
n
176
SER
299
A
PRO
300
n
177
PRO
300
A
LEU
301
n
178
LEU
301
A
TYR
302
n
179
TYR
302
A
PRO
303
n
180
PRO
303
A
ARG
304
n
181
ARG
304
A
ILE
305
n
182
ILE
305
A
ALA
306
n
183
ALA
306
A
ALA
307
n
184
ASP
307
A
GLY
308
n
185
GLY
308
A
THR
309
n
186
THR
309
A
HIS
310
n
187
HIS
310
A
LYS
311
n
188
LYS
311
A
SER
312
n
189
SER
312
A
GLY
313
n
190
GLY
313
A
GLU
314
n
191
GLU
314
A
SER
315
n
192
SER
315
A
PRO
316
n
193
PRO
316
A
THR
317
n
194
THR
317
A
HIS
318
n
195
HIS
318
A
PHE
319
n
196
PHE
319
A
LYS
320
n
197
LYS
320
A
ALA
321
n
198
ALA
321
A
ASN
322
n
199
ASN
322
A
LEU
323
n
200
LEU
323
A
ILE
324
n
201
ILE
324
A
SER
325
n
202
SER
325
A
TYR
326
n
203
TYR
326
A
LEU
327
n
204
LEU
327
A
THR
328
n
205
THR
328
A
ALA
329
n
206
ALA
329
A
TYR
330
n
207
TYR
330
A
ASN
331
n
208
ASN
331
A
ALA
332
n
209
ALA
332
A
PRO
333
n
210
PRO
333
A
SER
334
n
211
SER
334
A
LEU
335
n
212
LEU
335
A
LYS
336
n
213
LYS
336
A
GLU
337
n
214
GLU
337
A
TRP
338
n
215
TRP
338
A
ILE
339
n
216
ILE
339
A
ASP
340
n
217
ASP
340
A
VAL
341
n
218
VAL
341
A
ILE
342
n
219
ILE
342
A
HIS
343
n
220
HIS
343
A
LYS
344
n
221
LYS
344
A
HIS
345
n
222
HIS
345
A
ASP
346
n
223
ASP
346
A
LEU
347
n
224
LEU
347
A
SER
348
n
225
SER
348
A
GLU
349
n
226
GLU
349
A
THR
350
n
227
THR
350
A
ASN
351
n
228
ASN
351
A
VAL
352
n
229
VAL
352
A
TYR
353
n
230
TYR
353
A
LEU
354
n
231
LEU
354
A
ILE
355
n
232
ILE
355
A
GLY
356
n
233
GLY
356
A
SER
357
n
234
SER
357
A
THR
358
n
235
THR
358
A
PRO
359
n
236
PRO
359
A
GLY
360
n
237
GLY
360
A
ARG
361
n
238
ARG
361
A
PHE
362
n
239
PHE
362
A
GLN
363
n
240
GLN
363
A
GLY
364
n
241
GLY
364
A
SER
365
n
242
SER
365
A
GLN
366
n
243
GLN
366
A
LYS
367
n
244
LYS
367
A
ASP
368
n
245
ASP
368
A
ASN
369
n
246
ASN
369
A
TRP
370
n
247
TRP
370
A
GLY
371
n
248
GLY
371
A
HIS
372
n
249
HIS
372
A
PHE
373
n
250
PHE
373
A
ARG
374
n
251
ARG
374
A
LEU
375
n
252
LEU
375
A
LYS
376
n
253
LYS
376
A
LYS
377
n
254
LYS
377
A
LEU
378
n
255
LEU
378
A
LEU
379
n
256
LEU
379
A
LYS
380
n
257
LYS
380
A
ASP
381
n
258
ASP
381
A
HIS
382
n
259
HIS
382
A
ALA
383
n
260
ALA
383
A
SER
384
n
261
SER
384
A
SER
385
n
262
SER
385
A
MET
386
n
263
MET
386
A
n
264
387
A
n
265
388
A
n
266
389
A
n
267
390
A
SER
391
n
268
SER
391
A
TRP
392
n
269
TRP
392
A
PRO
393
n
270
PRO
393
A
VAL
394
n
271
VAL
394
A
VAL
395
n
272
VAL
395
A
GLY
396
n
273
GLY
396
A
GLN
397
n
274
GLN
397
A
PHE
398
n
275
PHE
398
A
SER
399
n
276
SER
399
A
SER
400
n
277
SER
400
A
VAL
401
n
278
VAL
401
A
GLY
402
n
279
GLY
402
A
SER
403
n
280
SER
403
A
LEU
404
n
281
LEU
404
A
GLY
405
n
282
GLY
405
A
ALA
406
n
283
ALA
406
A
ASP
407
n
284
ASP
407
A
GLU
408
n
285
GLU
408
A
SER
409
n
286
SER
409
A
LYS
410
n
287
LYS
410
A
TRP
411
n
288
TRP
411
A
LEU
412
n
289
LEU
412
A
CYS
413
n
290
CYS
413
A
SER
414
n
291
SER
414
A
GLU
415
n
292
GLU
415
A
PHE
416
n
293
PHE
416
A
LYS
417
n
294
LYS
417
A
GLU
418
n
295
GLU
418
A
SER
419
n
296
SER
419
A
MET
420
n
297
MET
420
A
LEU
421
n
298
LEU
421
A
THR
422
n
299
THR
422
A
LEU
423
n
300
LEU
423
A
GLY
424
n
301
GLY
424
A
n
302
425
A
n
303
426
A
n
304
427
A
n
305
428
A
n
306
429
A
n
307
430
A
n
308
431
A
n
309
432
A
n
310
433
A
n
311
434
A
VAL
435
n
312
VAL
435
A
PRO
436
n
313
PRO
436
A
LEU
437
n
314
LEU
437
A
TYR
438
n
315
TYR
438
A
LEU
439
n
316
LEU
439
A
ILE
440
n
317
ILE
440
A
TYR
441
n
318
TYR
441
A
PRO
442
n
319
PRO
442
A
SER
443
n
320
SER
443
A
VAL
444
n
321
VAL
444
A
GLU
445
n
322
GLU
445
A
ASN
446
n
323
ASN
446
A
VAL
447
n
324
VAL
447
A
ARG
448
n
325
ARG
448
A
THR
449
n
326
THR
449
A
SER
450
n
327
SER
450
A
LEU
451
n
328
LEU
451
A
GLU
452
n
329
GLU
452
A
GLY
453
n
330
GLY
453
A
TYR
454
n
331
TYR
454
A
PRO
455
n
332
PRO
455
A
ALA
456
n
333
ALA
456
A
GLY
457
n
334
GLY
457
A
GLY
458
n
335
GLY
458
A
SER
459
n
336
SER
459
A
LEU
460
n
337
LEU
460
A
PRO
461
n
338
PRO
461
A
TYR
462
n
339
TYR
462
A
SER
463
n
340
SER
463
A
ILE
464
n
341
ILE
464
A
GLN
465
n
342
GLN
465
A
THR
466
n
343
THR
466
A
ALA
467
n
344
ALA
467
A
GLU
468
n
345
GLU
468
A
LYS
469
n
346
LYS
469
A
GLN
470
n
347
GLN
470
A
ASN
471
n
348
ASN
471
A
TRP
472
n
349
TRP
472
A
LEU
473
n
350
LEU
473
A
HIS
474
n
351
HIS
474
A
SER
475
n
352
SER
475
A
TYR
476
n
353
TYR
476
A
PHE
477
n
354
PHE
477
A
HIS
478
n
355
HIS
478
A
LYS
479
n
356
LYS
479
A
TRP
480
n
357
TRP
480
A
SER
481
n
358
SER
481
A
ALA
482
n
359
ALA
482
A
GLU
483
n
360
GLU
483
A
THR
484
n
361
THR
484
A
SER
485
n
362
SER
485
A
GLY
486
n
363
GLY
486
A
ARG
487
n
364
ARG
487
A
SER
488
n
365
SER
488
A
ASN
489
n
366
ASN
489
A
ALA
490
n
367
ALA
490
A
MET
491
n
368
MET
491
A
PRO
492
n
369
PRO
492
A
HIS
493
n
370
HIS
493
A
ILE
494
n
371
ILE
494
A
LYS
495
n
372
LYS
495
A
THR
496
n
373
THR
496
A
TYR
497
n
374
TYR
497
A
MET
498
n
375
MET
498
A
ARG
499
n
376
ARG
499
A
PRO
500
n
377
PRO
500
A
SER
501
n
378
SER
501
A
PRO
502
n
379
PRO
502
A
ASP
503
n
380
ASP
503
A
PHE
504
n
381
PHE
504
A
SER
505
n
382
SER
505
A
LYS
506
n
383
LYS
506
A
ILE
507
n
384
ILE
507
A
ALA
508
n
385
ALA
508
A
TRP
509
n
386
TRP
509
A
PHE
510
n
387
PHE
510
A
LEU
511
n
388
LEU
511
A
VAL
512
n
389
VAL
512
A
THR
513
n
390
THR
513
A
SER
514
n
391
SER
514
A
ALA
515
n
392
ALA
515
A
ASN
516
n
393
ASN
516
A
LEU
517
n
394
LEU
517
A
SER
518
n
395
SER
518
A
LYS
519
n
396
LYS
519
A
ALA
520
n
397
ALA
520
A
ALA
521
n
398
ALA
521
A
TRP
522
n
399
TRP
522
A
GLY
523
n
400
GLY
523
A
ALA
524
n
401
ALA
524
A
LEU
525
n
402
LEU
525
A
GLU
526
n
403
GLU
526
A
LYS
527
n
404
LYS
527
A
ASN
528
n
405
ASN
528
A
GLY
529
n
406
GLY
529
A
THR
530
n
407
THR
530
A
GLN
531
n
408
GLN
531
A
LEU
532
n
409
LEU
532
A
MET
533
n
410
MET
533
A
ILE
534
n
411
ILE
534
A
ARG
535
n
412
ARG
535
A
SER
536
n
413
SER
536
A
TYR
537
n
414
TYR
537
A
GLU
538
n
415
GLU
538
A
LEU
539
n
416
LEU
539
A
GLY
540
n
417
GLY
540
A
VAL
541
n
418
VAL
541
A
LEU
542
n
419
LEU
542
A
PHE
543
n
420
PHE
543
A
LEU
544
n
421
LEU
544
A
PRO
545
n
422
PRO
545
A
SER
546
n
423
SER
546
A
ALA
547
n
424
ALA
547
A
LEU
548
n
425
LEU
548
A
GLY
549
n
426
GLY
549
A
LEU
550
n
427
LEU
550
A
ASP
551
n
428
ASP
551
A
SER
552
n
429
SER
552
A
PHE
553
n
430
PHE
553
A
LYS
554
n
431
LYS
554
A
VAL
555
n
432
VAL
555
A
LYS
556
n
433
LYS
556
A
GLN
557
n
434
GLN
557
A
ALA
558
n
435
LYS
558
A
PHE
559
n
436
PHE
559
A
n
437
560
A
n
438
561
A
n
439
562
A
n
440
563
A
n
441
564
A
n
442
565
A
n
443
566
A
n
444
567
A
ALA
568
n
445
ALA
568
A
THR
569
n
446
THR
569
A
PHE
570
n
447
PHE
570
A
PRO
571
n
448
PRO
571
A
VAL
572
n
449
VAL
572
A
PRO
573
n
450
PRO
573
A
TYR
574
n
451
TYR
574
A
ASP
575
n
452
ASP
575
A
LEU
576
n
453
LEU
576
A
PRO
577
n
454
PRO
577
A
PRO
578
n
455
PRO
578
A
GLU
579
n
456
GLU
579
A
LEU
580
n
457
LEU
580
A
TYR
581
n
458
TYR
581
A
GLY
582
n
459
GLY
582
A
SER
583
n
460
SER
583
A
LYS
584
n
461
LYS
584
A
ASP
585
n
462
ASP
585
A
ARG
586
n
463
ARG
586
A
PRO
587
n
464
PRO
587
A
TRP
588
n
465
TRP
588
A
ILE
589
n
466
ILE
589
A
TRP
590
n
467
TRP
590
A
ASN
591
n
468
ASN
591
A
ILE
592
n
469
ILE
592
A
PRO
593
n
470
PRO
593
A
TYR
594
n
471
TYR
594
A
VAL
595
n
472
VAL
595
A
ALA
596
n
473
LYS
596
A
ALA
597
n
474
ALA
597
A
PRO
598
n
475
PRO
598
A
ASP
599
n
476
ASP
599
A
THR
600
n
477
THR
600
A
HIS
601
n
478
HIS
601
A
GLY
602
n
479
GLY
602
A
ASN
603
n
480
ASN
603
A
MET
604
n
481
MET
604
A
TRP
605
n
482
TRP
605
A
VAL
606
n
483
VAL
606
A
PRO
607
n
484
PRO
607
A
SER
608
n
485
SER
608
A
n
1
124
B
n
2
125
B
n
3
126
B
n
4
127
B
n
5
128
B
n
6
129
B
n
7
130
B
n
8
131
B
n
9
132
B
n
10
133
B
n
11
134
B
n
12
135
B
n
13
136
B
n
14
137
B
n
15
138
B
n
16
139
B
n
17
140
B
n
18
141
B
n
19
142
B
n
20
143
B
n
21
144
B
n
22
145
B
n
23
146
B
n
24
147
B
n
25
148
B
n
26
149
B
n
27
150
B
n
28
151
B
n
29
152
B
n
30
153
B
n
31
154
B
n
32
155
B
n
33
156
B
n
34
157
B
n
35
158
B
ASP
159
n
36
ASP
159
B
LYS
160
n
37
LYS
160
B
GLY
161
n
38
GLY
161
B
ASN
162
n
39
ASN
162
B
PRO
163
n
40
PRO
163
B
PHE
164
n
41
PHE
164
B
GLN
165
n
42
GLN
165
B
PHE
166
n
43
PHE
166
B
TYR
167
n
44
TYR
167
B
LEU
168
n
45
LEU
168
B
THR
169
n
46
THR
169
B
ARG
170
n
47
ARG
170
B
VAL
171
n
48
VAL
171
B
SER
172
n
49
SER
172
B
GLY
173
n
50
GLY
173
B
VAL
174
n
51
VAL
174
B
LYS
175
n
52
LYS
175
B
PRO
176
n
53
PRO
176
B
LYS
177
n
54
LYS
177
B
TYR
178
n
55
TYR
178
B
ASN
179
n
56
ASN
179
B
SER
180
n
57
SER
180
B
GLY
181
n
58
GLY
181
B
ALA
182
n
59
ALA
182
B
LEU
183
n
60
LEU
183
B
HIS
184
n
61
HIS
184
B
ILE
185
n
62
ILE
185
B
LYS
186
n
63
LYS
186
B
ASP
187
n
64
ASP
187
B
ILE
188
n
65
ILE
188
B
LEU
189
n
66
LEU
189
B
SER
190
n
67
SER
190
B
PRO
191
n
68
PRO
191
B
LEU
192
n
69
LEU
192
B
PHE
193
n
70
PHE
193
B
GLY
194
n
71
GLY
194
B
THR
195
n
72
THR
195
B
LEU
196
n
73
LEU
196
B
VAL
197
n
74
VAL
197
B
SER
198
n
75
SER
198
B
SER
199
n
76
SER
199
B
ALA
200
n
77
ALA
200
B
GLN
201
n
78
GLN
201
B
PHE
202
n
79
PHE
202
B
ASN
203
n
80
ASN
203
B
TYR
204
n
81
TYR
204
B
CYS
205
n
82
CYS
205
B
PHE
206
n
83
PHE
206
B
ASP
207
n
84
ASP
207
B
VAL
208
n
85
VAL
208
B
ASP
209
n
86
ASP
209
B
TRP
210
n
87
TRP
210
B
LEU
211
n
88
LEU
211
B
VAL
212
n
89
VAL
212
B
LYS
213
n
90
LYS
213
B
GLN
214
n
91
GLN
214
B
TYR
215
n
92
TYR
215
B
PRO
216
n
93
PRO
216
B
PRO
217
n
94
PRO
217
B
GLU
218
n
95
GLU
218
B
PHE
219
n
96
PHE
219
B
ARG
220
n
97
ARG
220
B
LYS
221
n
98
LYS
221
B
LYS
222
n
99
LYS
222
B
PRO
223
n
100
PRO
223
B
ILE
224
n
101
ILE
224
B
LEU
225
n
102
LEU
225
B
LEU
226
n
103
LEU
226
B
VAL
227
n
104
VAL
227
B
HIS
228
n
105
HIS
228
B
GLY
229
n
106
GLY
229
B
ASP
230
n
107
ASP
230
B
LYS
231
n
108
LYS
231
B
ARG
232
n
109
ARG
232
B
GLU
233
n
110
GLU
233
B
ALA
234
n
111
ALA
234
B
LYS
235
n
112
LYS
235
B
ALA
236
n
113
ALA
236
B
HIS
237
n
114
HIS
237
B
LEU
238
n
115
LEU
238
B
HIS
239
n
116
HIS
239
B
ALA
240
n
117
ALA
240
B
GLN
241
n
118
GLN
241
B
ALA
242
n
119
ALA
242
B
LYS
243
n
120
LYS
243
B
PRO
244
n
121
PRO
244
B
TYR
245
n
122
TYR
245
B
GLU
246
n
123
GLU
246
B
ASN
247
n
124
ASN
247
B
ILE
248
n
125
ILE
248
B
SER
249
n
126
SER
249
B
LEU
250
n
127
LEU
250
B
CYS
251
n
128
CYS
251
B
GLN
252
n
129
GLN
252
B
ALA
253
n
130
ALA
253
B
LYS
254
n
131
LYS
254
B
LEU
255
n
132
LEU
255
B
ASP
256
n
133
ASP
256
B
ILE
257
n
134
ILE
257
B
ALA
258
n
135
ALA
258
B
PHE
259
n
136
PHE
259
B
GLY
260
n
137
GLY
260
B
THR
261
n
138
THR
261
B
HIS
262
n
139
HIS
262
B
HIS
263
n
140
HIS
263
B
THR
264
n
141
THR
264
B
LYS
265
n
142
LYS
265
B
MET
266
n
143
MET
266
B
MET
267
n
144
MET
267
B
LEU
268
n
145
LEU
268
B
LEU
269
n
146
LEU
269
B
LEU
270
n
147
LEU
270
B
TYR
271
n
148
TYR
271
B
GLU
272
n
149
GLU
272
B
GLU
273
n
150
GLU
273
B
GLY
274
n
151
GLY
274
B
LEU
275
n
152
LEU
275
B
ARG
276
n
153
ARG
276
B
VAL
277
n
154
VAL
277
B
VAL
278
n
155
VAL
278
B
ILE
279
n
156
ILE
279
B
HIS
280
n
157
HIS
280
B
THR
281
n
158
THR
281
B
SER
282
n
159
SER
282
B
ASN
283
n
160
ASN
283
B
LEU
284
n
161
LEU
284
B
ILE
285
n
162
ILE
285
B
HIS
286
n
163
HIS
286
B
ALA
287
n
164
ALA
287
B
ASP
288
n
165
ASP
288
B
TRP
289
n
166
TRP
289
B
HIS
290
n
167
HIS
290
B
GLN
291
n
168
GLN
291
B
LYS
292
n
169
LYS
292
B
THR
293
n
170
THR
293
B
GLN
294
n
171
GLN
294
B
GLY
295
n
172
GLY
295
B
ILE
296
n
173
ILE
296
B
TRP
297
n
174
TRP
297
B
LEU
298
n
175
LEU
298
B
SER
299
n
176
SER
299
B
PRO
300
n
177
PRO
300
B
LEU
301
n
178
LEU
301
B
TYR
302
n
179
TYR
302
B
PRO
303
n
180
PRO
303
B
ARG
304
n
181
ARG
304
B
ILE
305
n
182
ILE
305
B
ALA
306
n
183
ALA
306
B
ALA
307
n
184
ASP
307
B
GLY
308
n
185
GLY
308
B
ALA
309
n
186
THR
309
B
HIS
310
n
187
HIS
310
B
LYS
311
n
188
LYS
311
B
SER
312
n
189
SER
312
B
GLY
313
n
190
GLY
313
B
GLU
314
n
191
GLU
314
B
SER
315
n
192
SER
315
B
PRO
316
n
193
PRO
316
B
THR
317
n
194
THR
317
B
HIS
318
n
195
HIS
318
B
PHE
319
n
196
PHE
319
B
LYS
320
n
197
LYS
320
B
ALA
321
n
198
ALA
321
B
ASN
322
n
199
ASN
322
B
LEU
323
n
200
LEU
323
B
ILE
324
n
201
ILE
324
B
SER
325
n
202
SER
325
B
TYR
326
n
203
TYR
326
B
LEU
327
n
204
LEU
327
B
THR
328
n
205
THR
328
B
ALA
329
n
206
ALA
329
B
TYR
330
n
207
TYR
330
B
ASN
331
n
208
ASN
331
B
ALA
332
n
209
ALA
332
B
PRO
333
n
210
PRO
333
B
SER
334
n
211
SER
334
B
LEU
335
n
212
LEU
335
B
LYS
336
n
213
LYS
336
B
ALA
337
n
214
GLU
337
B
TRP
338
n
215
TRP
338
B
ILE
339
n
216
ILE
339
B
ASP
340
n
217
ASP
340
B
VAL
341
n
218
VAL
341
B
ILE
342
n
219
ILE
342
B
HIS
343
n
220
HIS
343
B
ALA
344
n
221
LYS
344
B
HIS
345
n
222
HIS
345
B
ASP
346
n
223
ASP
346
B
LEU
347
n
224
LEU
347
B
SER
348
n
225
SER
348
B
GLU
349
n
226
GLU
349
B
THR
350
n
227
THR
350
B
ASN
351
n
228
ASN
351
B
VAL
352
n
229
VAL
352
B
TYR
353
n
230
TYR
353
B
LEU
354
n
231
LEU
354
B
ILE
355
n
232
ILE
355
B
GLY
356
n
233
GLY
356
B
SER
357
n
234
SER
357
B
THR
358
n
235
THR
358
B
PRO
359
n
236
PRO
359
B
GLY
360
n
237
GLY
360
B
ARG
361
n
238
ARG
361
B
PHE
362
n
239
PHE
362
B
GLN
363
n
240
GLN
363
B
GLY
364
n
241
GLY
364
B
SER
365
n
242
SER
365
B
GLN
366
n
243
GLN
366
B
LYS
367
n
244
LYS
367
B
ASP
368
n
245
ASP
368
B
ASN
369
n
246
ASN
369
B
TRP
370
n
247
TRP
370
B
GLY
371
n
248
GLY
371
B
HIS
372
n
249
HIS
372
B
PHE
373
n
250
PHE
373
B
ARG
374
n
251
ARG
374
B
LEU
375
n
252
LEU
375
B
LYS
376
n
253
LYS
376
B
LYS
377
n
254
LYS
377
B
LEU
378
n
255
LEU
378
B
LEU
379
n
256
LEU
379
B
LYS
380
n
257
LYS
380
B
ASP
381
n
258
ASP
381
B
HIS
382
n
259
HIS
382
B
ALA
383
n
260
ALA
383
B
SER
384
n
261
SER
384
B
SER
385
n
262
SER
385
B
MET
386
n
263
MET
386
B
PRO
387
n
264
PRO
387
B
ASN
388
n
265
ASN
388
B
ALA
389
n
266
ALA
389
B
GLU
390
n
267
GLU
390
B
SER
391
n
268
SER
391
B
TRP
392
n
269
TRP
392
B
PRO
393
n
270
PRO
393
B
VAL
394
n
271
VAL
394
B
VAL
395
n
272
VAL
395
B
GLY
396
n
273
GLY
396
B
GLN
397
n
274
GLN
397
B
PHE
398
n
275
PHE
398
B
SER
399
n
276
SER
399
B
SER
400
n
277
SER
400
B
VAL
401
n
278
VAL
401
B
GLY
402
n
279
GLY
402
B
SER
403
n
280
SER
403
B
LEU
404
n
281
LEU
404
B
GLY
405
n
282
GLY
405
B
ALA
406
n
283
ALA
406
B
ASP
407
n
284
ASP
407
B
GLU
408
n
285
GLU
408
B
SER
409
n
286
SER
409
B
LYS
410
n
287
LYS
410
B
TRP
411
n
288
TRP
411
B
LEU
412
n
289
LEU
412
B
CYS
413
n
290
CYS
413
B
SER
414
n
291
SER
414
B
GLU
415
n
292
GLU
415
B
PHE
416
n
293
PHE
416
B
LYS
417
n
294
LYS
417
B
GLU
418
n
295
GLU
418
B
SER
419
n
296
SER
419
B
MET
420
n
297
MET
420
B
LEU
421
n
298
LEU
421
B
THR
422
n
299
THR
422
B
LEU
423
n
300
LEU
423
B
GLY
424
n
301
GLY
424
B
n
302
425
B
n
303
426
B
n
304
427
B
n
305
428
B
n
306
429
B
n
307
430
B
n
308
431
B
n
309
432
B
n
310
433
B
SER
434
n
311
SER
434
B
VAL
435
n
312
VAL
435
B
PRO
436
n
313
PRO
436
B
LEU
437
n
314
LEU
437
B
TYR
438
n
315
TYR
438
B
LEU
439
n
316
LEU
439
B
ILE
440
n
317
ILE
440
B
TYR
441
n
318
TYR
441
B
PRO
442
n
319
PRO
442
B
SER
443
n
320
SER
443
B
VAL
444
n
321
VAL
444
B
GLU
445
n
322
GLU
445
B
ASN
446
n
323
ASN
446
B
VAL
447
n
324
VAL
447
B
ARG
448
n
325
ARG
448
B
THR
449
n
326
THR
449
B
SER
450
n
327
SER
450
B
LEU
451
n
328
LEU
451
B
GLU
452
n
329
GLU
452
B
GLY
453
n
330
GLY
453
B
TYR
454
n
331
TYR
454
B
PRO
455
n
332
PRO
455
B
ALA
456
n
333
ALA
456
B
GLY
457
n
334
GLY
457
B
GLY
458
n
335
GLY
458
B
SER
459
n
336
SER
459
B
LEU
460
n
337
LEU
460
B
PRO
461
n
338
PRO
461
B
TYR
462
n
339
TYR
462
B
SER
463
n
340
SER
463
B
ILE
464
n
341
ILE
464
B
GLN
465
n
342
GLN
465
B
THR
466
n
343
THR
466
B
ALA
467
n
344
ALA
467
B
GLU
468
n
345
GLU
468
B
LYS
469
n
346
LYS
469
B
GLN
470
n
347
GLN
470
B
ASN
471
n
348
ASN
471
B
TRP
472
n
349
TRP
472
B
LEU
473
n
350
LEU
473
B
HIS
474
n
351
HIS
474
B
SER
475
n
352
SER
475
B
TYR
476
n
353
TYR
476
B
PHE
477
n
354
PHE
477
B
HIS
478
n
355
HIS
478
B
LYS
479
n
356
LYS
479
B
TRP
480
n
357
TRP
480
B
SER
481
n
358
SER
481
B
ALA
482
n
359
ALA
482
B
GLU
483
n
360
GLU
483
B
THR
484
n
361
THR
484
B
SER
485
n
362
SER
485
B
GLY
486
n
363
GLY
486
B
ARG
487
n
364
ARG
487
B
SER
488
n
365
SER
488
B
ASN
489
n
366
ASN
489
B
ALA
490
n
367
ALA
490
B
MET
491
n
368
MET
491
B
PRO
492
n
369
PRO
492
B
HIS
493
n
370
HIS
493
B
ILE
494
n
371
ILE
494
B
LYS
495
n
372
LYS
495
B
THR
496
n
373
THR
496
B
TYR
497
n
374
TYR
497
B
MET
498
n
375
MET
498
B
ARG
499
n
376
ARG
499
B
PRO
500
n
377
PRO
500
B
SER
501
n
378
SER
501
B
PRO
502
n
379
PRO
502
B
ASP
503
n
380
ASP
503
B
PHE
504
n
381
PHE
504
B
SER
505
n
382
SER
505
B
LYS
506
n
383
LYS
506
B
ILE
507
n
384
ILE
507
B
ALA
508
n
385
ALA
508
B
TRP
509
n
386
TRP
509
B
PHE
510
n
387
PHE
510
B
LEU
511
n
388
LEU
511
B
VAL
512
n
389
VAL
512
B
THR
513
n
390
THR
513
B
SER
514
n
391
SER
514
B
ALA
515
n
392
ALA
515
B
ASN
516
n
393
ASN
516
B
LEU
517
n
394
LEU
517
B
SER
518
n
395
SER
518
B
LYS
519
n
396
LYS
519
B
ALA
520
n
397
ALA
520
B
ALA
521
n
398
ALA
521
B
TRP
522
n
399
TRP
522
B
GLY
523
n
400
GLY
523
B
ALA
524
n
401
ALA
524
B
LEU
525
n
402
LEU
525
B
GLU
526
n
403
GLU
526
B
LYS
527
n
404
LYS
527
B
ASN
528
n
405
ASN
528
B
GLY
529
n
406
GLY
529
B
THR
530
n
407
THR
530
B
GLN
531
n
408
GLN
531
B
LEU
532
n
409
LEU
532
B
MET
533
n
410
MET
533
B
ILE
534
n
411
ILE
534
B
ARG
535
n
412
ARG
535
B
SER
536
n
413
SER
536
B
TYR
537
n
414
TYR
537
B
GLU
538
n
415
GLU
538
B
LEU
539
n
416
LEU
539
B
GLY
540
n
417
GLY
540
B
VAL
541
n
418
VAL
541
B
LEU
542
n
419
LEU
542
B
PHE
543
n
420
PHE
543
B
LEU
544
n
421
LEU
544
B
PRO
545
n
422
PRO
545
B
SER
546
n
423
SER
546
B
ALA
547
n
424
ALA
547
B
LEU
548
n
425
LEU
548
B
GLY
549
n
426
GLY
549
B
LEU
550
n
427
LEU
550
B
ASP
551
n
428
ASP
551
B
SER
552
n
429
SER
552
B
PHE
553
n
430
PHE
553
B
LYS
554
n
431
LYS
554
B
VAL
555
n
432
VAL
555
B
LYS
556
n
433
LYS
556
B
ALA
557
n
434
GLN
557
B
ALA
558
n
435
LYS
558
B
PHE
559
n
436
PHE
559
B
n
437
560
B
n
438
561
B
n
439
562
B
n
440
563
B
n
441
564
B
n
442
565
B
n
443
566
B
ALA
567
n
444
MET
567
B
ALA
568
n
445
ALA
568
B
THR
569
n
446
THR
569
B
PHE
570
n
447
PHE
570
B
PRO
571
n
448
PRO
571
B
VAL
572
n
449
VAL
572
B
PRO
573
n
450
PRO
573
B
TYR
574
n
451
TYR
574
B
ASP
575
n
452
ASP
575
B
LEU
576
n
453
LEU
576
B
PRO
577
n
454
PRO
577
B
PRO
578
n
455
PRO
578
B
GLU
579
n
456
GLU
579
B
LEU
580
n
457
LEU
580
B
TYR
581
n
458
TYR
581
B
GLY
582
n
459
GLY
582
B
SER
583
n
460
SER
583
B
LYS
584
n
461
LYS
584
B
ASP
585
n
462
ASP
585
B
ARG
586
n
463
ARG
586
B
PRO
587
n
464
PRO
587
B
TRP
588
n
465
TRP
588
B
ILE
589
n
466
ILE
589
B
TRP
590
n
467
TRP
590
B
ASN
591
n
468
ASN
591
B
ILE
592
n
469
ILE
592
B
PRO
593
n
470
PRO
593
B
TYR
594
n
471
TYR
594
B
VAL
595
n
472
VAL
595
B
LYS
596
n
473
LYS
596
B
ALA
597
n
474
ALA
597
B
PRO
598
n
475
PRO
598
B
ASP
599
n
476
ASP
599
B
THR
600
n
477
THR
600
B
HIS
601
n
478
HIS
601
B
GLY
602
n
479
GLY
602
B
ASN
603
n
480
ASN
603
B
MET
604
n
481
MET
604
B
TRP
605
n
482
TRP
605
B
VAL
606
n
483
VAL
606
B
PRO
607
n
484
PRO
607
B
n
485
608
B
LYS
720
n
1
LYS
720
C
LEU
721
n
2
LEU
721
C
ASN
722
n
3
ASN
722
C
TYR
723
n
4
TYR
723
C
LEU
724
n
5
LEU
724
C
n
6
725
C
n
7
726
C
n
8
727
C
author_defined_assembly
3
trimeric
author_defined_assembly
2
dimeric
D
DT
806
A
O3'
DT
6
1_555
A
VO4
699
F
V
VO4
1_555
A
VO4
699
F
O1
VO4
1_555
121.6
D
DT
806
A
O3'
DT
6
1_555
A
VO4
699
F
V
VO4
1_555
A
VO4
699
F
O3
VO4
1_555
111.3
A
VO4
699
F
O1
VO4
1_555
A
VO4
699
F
V
VO4
1_555
A
VO4
699
F
O3
VO4
1_555
126.7
D
DT
806
A
O3'
DT
6
1_555
A
VO4
699
F
V
VO4
1_555
A
HIS
263
C
NE2
HIS
140
1_555
84.6
A
VO4
699
F
O1
VO4
1_555
A
VO4
699
F
V
VO4
1_555
A
HIS
263
C
NE2
HIS
140
1_555
104.5
A
VO4
699
F
O3
VO4
1_555
A
VO4
699
F
V
VO4
1_555
A
HIS
263
C
NE2
HIS
140
1_555
85.7
D
DT
806
A
O3'
DT
6
1_555
A
VO4
699
F
V
VO4
1_555
C
TYR
723
E
OH
TYR
4
1_555
89.1
A
VO4
699
F
O1
VO4
1_555
A
VO4
699
F
V
VO4
1_555
C
TYR
723
E
OH
TYR
4
1_555
86.0
A
VO4
699
F
O3
VO4
1_555
A
VO4
699
F
V
VO4
1_555
C
TYR
723
E
OH
TYR
4
1_555
88.7
A
HIS
263
C
NE2
HIS
140
1_555
A
VO4
699
F
V
VO4
1_555
C
TYR
723
E
OH
TYR
4
1_555
169.4
F
DT
806
B
O3'
DT
6
1_555
B
VO4
699
G
V
VO4
1_555
B
VO4
699
G
O1
VO4
1_555
127.5
F
DT
806
B
O3'
DT
6
1_555
B
VO4
699
G
V
VO4
1_555
B
VO4
699
G
O3
VO4
1_555
104.6
B
VO4
699
G
O1
VO4
1_555
B
VO4
699
G
V
VO4
1_555
B
VO4
699
G
O3
VO4
1_555
127.9
F
DT
806
B
O3'
DT
6
1_555
B
VO4
699
G
V
VO4
1_555
B
HIS
263
D
NE2
HIS
140
1_555
81.8
B
VO4
699
G
O1
VO4
1_555
B
VO4
699
G
V
VO4
1_555
B
HIS
263
D
NE2
HIS
140
1_555
101.4
B
VO4
699
G
O3
VO4
1_555
B
VO4
699
G
V
VO4
1_555
B
HIS
263
D
NE2
HIS
140
1_555
83.9
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
167
C
N
TYR
44
A
O
ILE
296
C
O
ILE
173
A
O
TRP
297
C
O
TRP
174
A
N
ILE
279
C
N
ILE
156
A
O
ARG
276
C
O
ARG
153
A
N
LEU
269
C
N
LEU
146
A
O
MET
266
C
O
MET
143
A
N
PHE
202
C
N
PHE
79
A
N
GLN
201
C
N
GLN
78
A
O
LEU
225
C
O
LEU
102
A
N
LEU
226
C
N
LEU
103
A
O
CYS
251
C
O
CYS
128
A
N
SER
357
C
N
SER
234
A
O
GLU
538
C
O
GLU
415
A
O
PHE
543
C
O
PHE
420
A
N
PHE
510
C
N
PHE
387
A
O
LEU
511
C
O
LEU
388
A
N
TYR
497
C
N
TYR
374
A
O
MET
498
C
O
MET
375
A
N
VAL
395
C
N
VAL
272
A
N
VAL
394
C
N
VAL
271
A
O
TYR
438
C
O
TYR
315
A
N
LEU
439
C
N
LEU
316
A
O
HIS
478
C
O
HIS
355
A
N
SER
357
C
N
SER
234
A
O
GLU
538
C
O
GLU
415
A
O
PHE
543
C
O
PHE
420
A
N
PHE
510
C
N
PHE
387
A
N
ILE
507
C
N
ILE
384
A
O
PHE
553
C
O
PHE
430
A
N
LYS
554
C
N
LYS
431
A
O
PHE
570
C
O
PHE
447
A
N
GLY
360
C
N
GLY
237
A
O
ILE
534
C
O
ILE
411
A
O
GLN
531
C
O
GLN
408
A
N
GLU
526
C
N
GLU
403
B
N
TYR
167
D
N
TYR
44
B
O
ILE
296
D
O
ILE
173
B
O
TRP
297
D
O
TRP
174
B
N
ILE
279
D
N
ILE
156
B
O
ARG
276
D
O
ARG
153
B
N
LEU
269
D
N
LEU
146
B
O
MET
266
D
O
MET
143
B
N
PHE
202
D
N
PHE
79
B
N
GLN
201
D
N
GLN
78
B
O
LEU
225
D
O
LEU
102
B
N
ILE
224
D
N
ILE
101
B
O
SER
249
D
O
SER
126
B
N
SER
357
D
N
SER
234
B
O
GLU
538
D
O
GLU
415
B
O
PHE
543
D
O
PHE
420
B
N
PHE
510
D
N
PHE
387
B
O
LEU
511
D
O
LEU
388
B
N
TYR
497
D
N
TYR
374
B
O
THR
496
D
O
THR
373
B
N
GLN
397
D
N
GLN
274
B
N
GLY
396
D
N
GLY
273
B
O
ILE
440
D
O
ILE
317
B
N
LEU
439
D
N
LEU
316
B
O
HIS
478
D
O
HIS
355
B
N
SER
357
D
N
SER
234
B
O
GLU
538
D
O
GLU
415
B
O
PHE
543
D
O
PHE
420
B
N
PHE
510
D
N
PHE
387
B
N
ILE
507
D
N
ILE
384
B
O
PHE
553
D
O
PHE
430
B
N
LYS
554
D
N
LYS
431
B
O
PHE
570
D
O
PHE
447
B
N
PHE
362
D
N
PHE
239
B
O
LEU
532
D
O
LEU
409
B
O
GLN
531
D
O
GLN
408
B
N
GLU
526
D
N
GLU
403
1
A
CG
GLU
246
C
CG
GLU
123
1
Y
1
A
CD
GLU
246
C
CD
GLU
123
1
Y
1
A
OE1
GLU
246
C
OE1
GLU
123
1
Y
1
A
OE2
GLU
246
C
OE2
GLU
123
1
Y
1
A
CG
ASP
307
C
CG
ASP
184
1
Y
1
A
OD1
ASP
307
C
OD1
ASP
184
1
Y
1
A
OD2
ASP
307
C
OD2
ASP
184
1
Y
1
A
CG
LYS
558
C
CG
LYS
435
1
Y
1
A
CD
LYS
558
C
CD
LYS
435
1
Y
1
A
CE
LYS
558
C
CE
LYS
435
1
Y
1
A
NZ
LYS
558
C
NZ
LYS
435
1
Y
1
A
CG
LYS
596
C
CG
LYS
473
1
Y
1
A
CD
LYS
596
C
CD
LYS
473
1
Y
1
A
CE
LYS
596
C
CE
LYS
473
1
Y
1
A
NZ
LYS
596
C
NZ
LYS
473
1
Y
1
B
CG
ASP
307
D
CG
ASP
184
1
Y
1
B
OD1
ASP
307
D
OD1
ASP
184
1
Y
1
B
OD2
ASP
307
D
OD2
ASP
184
1
Y
1
B
OG1
THR
309
D
OG1
THR
186
1
Y
1
B
CG2
THR
309
D
CG2
THR
186
1
Y
1
B
CG
GLU
337
D
CG
GLU
214
1
Y
1
B
CD
GLU
337
D
CD
GLU
214
1
Y
1
B
OE1
GLU
337
D
OE1
GLU
214
1
Y
1
B
OE2
GLU
337
D
OE2
GLU
214
1
Y
1
B
CG
LYS
344
D
CG
LYS
221
1
Y
1
B
CD
LYS
344
D
CD
LYS
221
1
Y
1
B
CE
LYS
344
D
CE
LYS
221
1
Y
1
B
NZ
LYS
344
D
NZ
LYS
221
1
Y
1
B
CG
GLN
557
D
CG
GLN
434
1
Y
1
B
CD
GLN
557
D
CD
GLN
434
1
Y
1
B
OE1
GLN
557
D
OE1
GLN
434
1
Y
1
B
NE2
GLN
557
D
NE2
GLN
434
1
Y
1
B
CG
LYS
558
D
CG
LYS
435
1
Y
1
B
CD
LYS
558
D
CD
LYS
435
1
Y
1
B
CE
LYS
558
D
CE
LYS
435
1
Y
1
B
NZ
LYS
558
D
NZ
LYS
435
1
Y
1
B
CG
MET
567
D
CG
MET
444
1
Y
1
B
SD
MET
567
D
SD
MET
444
1
Y
1
B
CE
MET
567
D
CE
MET
444
1
Y
1
D
DA
801
A
DA
1
1
Y
1
D
DG
802
A
DG
2
1
Y
1
D
DA
803
A
DA
3
1
Y
1
F
DA
801
B
DA
1
1
Y
1
F
DG
802
B
DG
2
1
Y
1
F
DA
803
B
DA
3
1
Y
1
F
DG
804
B
DG
4
1
Y
1
F
DT
805
B
DT
5
1
Y
1
A
MET
124
C
MET
1
1
Y
1
A
GLY
125
C
GLY
2
1
Y
1
A
SER
126
C
SER
3
1
Y
1
A
SER
127
C
SER
4
1
Y
1
A
HIS
128
C
HIS
5
1
Y
1
A
HIS
129
C
HIS
6
1
Y
1
A
HIS
130
C
HIS
7
1
Y
1
A
HIS
131
C
HIS
8
1
Y
1
A
HIS
132
C
HIS
9
1
Y
1
A
HIS
133
C
HIS
10
1
Y
1
A
SER
134
C
SER
11
1
Y
1
A
SER
135
C
SER
12
1
Y
1
A
GLY
136
C
GLY
13
1
Y
1
A
LEU
137
C
LEU
14
1
Y
1
A
VAL
138
C
VAL
15
1
Y
1
A
PRO
139
C
PRO
16
1
Y
1
A
ARG
140
C
ARG
17
1
Y
1
A
GLY
141
C
GLY
18
1
Y
1
A
SER
142
C
SER
19
1
Y
1
A
HIS
143
C
HIS
20
1
Y
1
A
MET
144
C
MET
21
1
Y
1
A
LEU
145
C
LEU
22
1
Y
1
A
GLU
146
C
GLU
23
1
Y
1
A
ASP
147
C
ASP
24
1
Y
1
A
PRO
148
C
PRO
25
1
Y
1
A
GLY
149
C
GLY
26
1
Y
1
A
GLU
150
C
GLU
27
1
Y
1
A
GLY
151
C
GLY
28
1
Y
1
A
GLN
152
C
GLN
29
1
Y
1
A
ASP
153
C
ASP
30
1
Y
1
A
ILE
154
C
ILE
31
1
Y
1
A
TRP
155
C
TRP
32
1
Y
1
A
ASP
156
C
ASP
33
1
Y
1
A
MET
157
C
MET
34
1
Y
1
A
LEU
158
C
LEU
35
1
Y
1
A
ASP
159
C
ASP
36
1
Y
1
A
LYS
160
C
LYS
37
1
Y
1
A
GLY
161
C
GLY
38
1
Y
1
A
PRO
387
C
PRO
264
1
Y
1
A
ASN
388
C
ASN
265
1
Y
1
A
ALA
389
C
ALA
266
1
Y
1
A
GLU
390
C
GLU
267
1
Y
1
A
LYS
425
C
LYS
302
1
Y
1
A
GLU
426
C
GLU
303
1
Y
1
A
SER
427
C
SER
304
1
Y
1
A
LYS
428
C
LYS
305
1
Y
1
A
THR
429
C
THR
306
1
Y
1
A
PRO
430
C
PRO
307
1
Y
1
A
GLY
431
C
GLY
308
1
Y
1
A
LYS
432
C
LYS
309
1
Y
1
A
SER
433
C
SER
310
1
Y
1
A
SER
434
C
SER
311
1
Y
1
A
PHE
560
C
PHE
437
1
Y
1
A
ALA
561
C
ALA
438
1
Y
1
A
GLY
562
C
GLY
439
1
Y
1
A
SER
563
C
SER
440
1
Y
1
A
GLN
564
C
GLN
441
1
Y
1
A
GLU
565
C
GLU
442
1
Y
1
A
PRO
566
C
PRO
443
1
Y
1
A
MET
567
C
MET
444
1
Y
1
B
MET
124
D
MET
1
1
Y
1
B
GLY
125
D
GLY
2
1
Y
1
B
SER
126
D
SER
3
1
Y
1
B
SER
127
D
SER
4
1
Y
1
B
HIS
128
D
HIS
5
1
Y
1
B
HIS
129
D
HIS
6
1
Y
1
B
HIS
130
D
HIS
7
1
Y
1
B
HIS
131
D
HIS
8
1
Y
1
B
HIS
132
D
HIS
9
1
Y
1
B
HIS
133
D
HIS
10
1
Y
1
B
SER
134
D
SER
11
1
Y
1
B
SER
135
D
SER
12
1
Y
1
B
GLY
136
D
GLY
13
1
Y
1
B
LEU
137
D
LEU
14
1
Y
1
B
VAL
138
D
VAL
15
1
Y
1
B
PRO
139
D
PRO
16
1
Y
1
B
ARG
140
D
ARG
17
1
Y
1
B
GLY
141
D
GLY
18
1
Y
1
B
SER
142
D
SER
19
1
Y
1
B
HIS
143
D
HIS
20
1
Y
1
B
MET
144
D
MET
21
1
Y
1
B
LEU
145
D
LEU
22
1
Y
1
B
GLU
146
D
GLU
23
1
Y
1
B
ASP
147
D
ASP
24
1
Y
1
B
PRO
148
D
PRO
25
1
Y
1
B
GLY
149
D
GLY
26
1
Y
1
B
GLU
150
D
GLU
27
1
Y
1
B
GLY
151
D
GLY
28
1
Y
1
B
GLN
152
D
GLN
29
1
Y
1
B
ASP
153
D
ASP
30
1
Y
1
B
ILE
154
D
ILE
31
1
Y
1
B
TRP
155
D
TRP
32
1
Y
1
B
ASP
156
D
ASP
33
1
Y
1
B
MET
157
D
MET
34
1
Y
1
B
LEU
158
D
LEU
35
1
Y
1
B
LYS
425
D
LYS
302
1
Y
1
B
GLU
426
D
GLU
303
1
Y
1
B
SER
427
D
SER
304
1
Y
1
B
LYS
428
D
LYS
305
1
Y
1
B
THR
429
D
THR
306
1
Y
1
B
PRO
430
D
PRO
307
1
Y
1
B
GLY
431
D
GLY
308
1
Y
1
B
LYS
432
D
LYS
309
1
Y
1
B
SER
433
D
SER
310
1
Y
1
B
PHE
560
D
PHE
437
1
Y
1
B
ALA
561
D
ALA
438
1
Y
1
B
GLY
562
D
GLY
439
1
Y
1
B
SER
563
D
SER
440
1
Y
1
B
GLN
564
D
GLN
441
1
Y
1
B
GLU
565
D
GLU
442
1
Y
1
B
PRO
566
D
PRO
443
1
Y
1
B
SER
608
D
SER
485
1
Y
1
C
ASP
725
E
ASP
6
1
Y
1
C
PRO
726
E
PRO
7
1
Y
1
C
ARG
727
E
ARG
8
1
Y
1
A
A
LYS
ASN
527
528
-139.23
1
-4.98
0.70
108.00
103.02
D
D
D
O4'
C1'
N1
DT
DT
DT
805
805
805
N
1
3.70
0.60
119.00
122.70
D
D
D
C4
C5
C7
DT
DT
DT
805
805
805
N
1
6.84
0.90
118.30
125.14
A
A
A
CB
CG
OD2
ASP
ASP
ASP
209
209
209
N
1
9.24
0.90
118.30
127.54
A
A
A
CB
CG
OD2
ASP
ASP
ASP
340
340
340
N
1
5.64
0.90
118.30
123.94
A
A
A
CB
CG
OD2
ASP
ASP
ASP
407
407
407
N
1
6.20
0.90
118.30
124.50
A
A
A
CB
CG
OD2
ASP
ASP
ASP
599
599
599
N
1
6.83
0.90
118.30
125.13
B
B
B
CB
CG
OD2
ASP
ASP
ASP
209
209
209
N
1
6.60
0.90
118.30
124.90
B
B
B
CB
CG
OD2
ASP
ASP
ASP
407
407
407
N
1
7.35
0.90
118.30
125.65
B
B
B
CB
CG
OD2
ASP
ASP
ASP
599
599
599
N
1
A
TYR
204
-99.68
-63.90
1
A
ARG
232
51.71
-118.71
1
A
LEU
255
-119.39
76.71
1
A
HIS
290
-94.40
-69.38
1
A
TRP
411
-163.59
-51.14
1
A
SER
414
-75.21
-93.45
1
A
GLN
470
-140.02
43.76
1
A
ALA
482
-147.85
52.71
1
A
LYS
527
35.69
62.86
1
A
ASN
528
-33.93
121.21
1
A
THR
600
-38.44
-39.09
1
B
TYR
204
-98.61
-63.31
1
B
ARG
232
50.38
-117.65
1
B
HIS
290
-102.15
-68.39
1
B
ALA
306
-48.85
159.63
1
B
TRP
411
-160.07
-57.51
1
B
SER
414
-97.39
-72.04
1
B
GLN
470
-149.52
45.39
1
B
ALA
482
-155.27
43.51
1
B
ALA
568
-90.74
40.70
1
C
ASN
722
-170.35
-174.09
29.253
-2.23
0.00
0.00
4.03
0.00
-1.80
0.933
0.906
0.25185
0.20601
0.2083
0.2083
2.30
95.35
2169
43799
41018
5.0
93.65
7.144
0.171
RANDOM
1
THROUGHOUT
0
MOLECULAR REPLACEMENT
0.368
0.250
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
2.30
95.35
96
7072
6
82
6888
0.014
0.021
7205
1.387
1.952
9805
6.748
5.000
855
0.096
0.200
1037
0.006
0.020
5436
0.204
0.200
3047
0.345
302
0.218
0.200
38
0.092
0.200
1
1.205
2.000
4311
2.089
3.000
6949
1.177
2.000
2894
1.819
3.000
2856
0.318
0.268
2.360
106
2019
20
61.9
2.3
95.65
1NOP
43799
41018
0
0
0.085
1
4.7
93.65
2.3
2.36
2.08
0.339
61.9
refinement
REFMAC
5.1.24
data reduction
HKL-2000
data scaling
SCALEPACK
phasing
AMoRE
Crystal structure of human tyrosyl-DNA phosphodiesterase (Tdp1) in complex with vanadate, DNA and a human topoisomerase I-derived peptide
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
5
N
N
5
N
N
5
N
N
One monomer of Tdp1 is the biologically active assembly
A
LYS
175
C
LYS
52
HELX_P
A
ASN
179
C
ASN
56
5
1
5
A
HIS
184
C
HIS
61
HELX_P
A
SER
190
C
SER
67
1
2
7
A
PRO
191
C
PRO
68
HELX_P
A
GLY
194
C
GLY
71
5
3
4
A
ASP
207
C
ASP
84
HELX_P
A
TYR
215
C
TYR
92
1
4
9
A
PRO
216
C
PRO
93
HELX_P
A
ARG
220
C
ARG
97
5
5
5
A
LYS
231
C
LYS
108
HELX_P
A
LYS
243
C
LYS
120
1
6
13
A
ILE
285
C
ILE
162
HELX_P
A
HIS
290
C
HIS
167
5
7
6
A
HIS
318
C
HIS
195
HELX_P
A
ALA
329
C
ALA
206
1
8
12
A
ALA
332
C
ALA
209
HELX_P
A
HIS
345
C
HIS
222
1
9
14
A
GLN
363
C
GLN
240
HELX_P
A
ASN
369
C
ASN
246
5
10
7
A
TRP
370
C
TRP
247
HELX_P
A
ALA
383
C
ALA
260
1
11
14
A
SER
414
C
SER
291
HELX_P
A
THR
422
C
THR
299
1
12
9
A
SER
443
C
SER
320
HELX_P
A
THR
449
C
THR
326
1
13
7
A
GLY
453
C
GLY
330
HELX_P
A
LEU
460
C
LEU
337
5
14
8
A
SER
463
C
SER
340
HELX_P
A
GLU
468
C
GLU
345
1
15
6
A
LYS
469
C
LYS
346
HELX_P
A
SER
475
C
SER
352
5
16
7
A
ALA
482
C
ALA
359
HELX_P
A
GLY
486
C
GLY
363
5
17
5
A
SER
518
C
SER
395
HELX_P
A
GLY
523
C
GLY
400
1
18
6
A
LEU
544
C
LEU
421
HELX_P
A
GLY
549
C
GLY
426
5
19
6
B
LYS
175
D
LYS
52
HELX_P
B
ASN
179
D
ASN
56
5
20
5
B
HIS
184
D
HIS
61
HELX_P
B
SER
190
D
SER
67
1
21
7
B
PRO
191
D
PRO
68
HELX_P
B
GLY
194
D
GLY
71
5
22
4
B
ASP
207
D
ASP
84
HELX_P
B
TYR
215
D
TYR
92
1
23
9
B
PRO
216
D
PRO
93
HELX_P
B
ARG
220
D
ARG
97
5
24
5
B
LYS
231
D
LYS
108
HELX_P
B
LYS
243
D
LYS
120
1
25
13
B
HIS
286
D
HIS
163
HELX_P
B
HIS
290
D
HIS
167
5
26
5
B
HIS
318
D
HIS
195
HELX_P
B
ALA
329
D
ALA
206
1
27
12
B
ALA
332
D
ALA
209
HELX_P
B
LYS
344
D
LYS
221
1
28
13
B
GLN
363
D
GLN
240
HELX_P
B
ASN
369
D
ASN
246
5
29
7
B
TRP
370
D
TRP
247
HELX_P
B
ALA
383
D
ALA
260
1
30
14
B
ASN
388
D
ASN
265
HELX_P
B
TRP
392
D
TRP
269
5
31
5
B
GLU
415
D
GLU
292
HELX_P
B
LEU
421
D
LEU
298
1
32
7
B
SER
443
D
SER
320
HELX_P
B
THR
449
D
THR
326
1
33
7
B
GLY
453
D
GLY
330
HELX_P
B
LEU
460
D
LEU
337
5
34
8
B
SER
463
D
SER
340
HELX_P
B
GLU
468
D
GLU
345
1
35
6
B
LYS
469
D
LYS
346
HELX_P
B
SER
475
D
SER
352
5
36
7
B
ALA
482
D
ALA
359
HELX_P
B
GLY
486
D
GLY
363
5
37
5
B
SER
518
D
SER
395
HELX_P
B
GLY
523
D
GLY
400
1
38
6
B
LEU
544
D
LEU
421
HELX_P
B
GLY
549
D
GLY
426
5
39
6
metalc
1.775
D
DT
806
A
O3'
DT
6
1_555
A
VO4
699
F
V
VO4
1_555
metalc
1.753
F
DT
806
B
O3'
DT
6
1_555
B
VO4
699
G
V
VO4
1_555
metalc
2.040
A
HIS
263
C
NE2
HIS
140
1_555
A
VO4
699
F
V
VO4
1_555
metalc
1.990
A
VO4
699
F
V
VO4
1_555
C
TYR
723
E
OH
TYR
4
1_555
metalc
2.170
B
HIS
263
D
NE2
HIS
140
1_555
B
VO4
699
G
V
VO4
1_555
HYDROLASE/DNA
PROTEIN-DNA COMPLEX, vanadate complex, transition state mimic, HYDROLASE-DNA COMPLEX
A
LEU
576
C
LEU
453
1
A
PRO
577
C
PRO
454
-7.35
B
LEU
576
D
LEU
453
1
B
PRO
577
D
PRO
454
-5.43
NP_060789
GB
2
149
20127586
GEGQDIWDMLDKGNPFQFYLTRVSGVKPKYNSGALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKPILLVH
GDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRIADG
THKSGESPTHFKADLISYLMAYNAPSLKEWIDVIHKHDLSETNVYLIGSTPGRFQGSQKDNWGHFRLKKLLKDHASSMPN
AESWPVVGQFSSVGSLGADESKWLCSEFKESMLTLGKESKTPGKSSVPLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAE
KQNWLHSYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKIAWFLVTSANLSKAAWGALEKNGTQLMIRSYELGVLFLPSAF
GLDSFKVKQKFFAGSQEPMATFPVPYDLPPELYGSKDRPWIWNIPYVKAPDTHGNMWVPS
1NOP
PDB
1
1NOP
1NOP
PDB
3
1NOP
149
608
1NOP
149
608
20127586
A
1
26
485
149
608
1NOP
149
608
20127586
B
1
26
485
801
806
1NOP
801
806
1NOP
D
2
1
6
801
806
1NOP
801
806
1NOP
F
2
1
6
720
727
1NOP
720
727
1NOP
C
3
1
8
1
cloning artifact
MET
124
1NOP
A
20127586
GB
1
1
cloning artifact
GLY
125
1NOP
A
20127586
GB
2
1
cloning artifact
SER
126
1NOP
A
20127586
GB
3
1
cloning artifact
SER
127
1NOP
A
20127586
GB
4
1
cloning artifact
HIS
128
1NOP
A
20127586
GB
5
1
cloning artifact
HIS
129
1NOP
A
20127586
GB
6
1
cloning artifact
HIS
130
1NOP
A
20127586
GB
7
1
cloning artifact
HIS
131
1NOP
A
20127586
GB
8
1
cloning artifact
HIS
132
1NOP
A
20127586
GB
9
1
cloning artifact
HIS
133
1NOP
A
20127586
GB
10
1
cloning artifact
SER
134
1NOP
A
20127586
GB
11
1
cloning artifact
SER
135
1NOP
A
20127586
GB
12
1
cloning artifact
GLY
136
1NOP
A
20127586
GB
13
1
cloning artifact
LEU
137
1NOP
A
20127586
GB
14
1
cloning artifact
VAL
138
1NOP
A
20127586
GB
15
1
cloning artifact
PRO
139
1NOP
A
20127586
GB
16
1
cloning artifact
ARG
140
1NOP
A
20127586
GB
17
1
cloning artifact
GLY
141
1NOP
A
20127586
GB
18
1
cloning artifact
SER
142
1NOP
A
20127586
GB
19
1
cloning artifact
HIS
143
1NOP
A
20127586
GB
20
1
cloning artifact
MET
144
1NOP
A
20127586
GB
21
1
cloning artifact
LEU
145
1NOP
A
20127586
GB
22
1
cloning artifact
GLU
146
1NOP
A
20127586
GB
23
1
cloning artifact
ASP
147
1NOP
A
20127586
GB
24
1
cloning artifact
PRO
148
1NOP
A
20127586
GB
25
1
ASP
engineered mutation
ASN
322
1NOP
A
20127586
GB
322
199
1
MET
engineered mutation
THR
328
1NOP
A
20127586
GB
328
205
1
PHE
engineered mutation
LEU
548
1NOP
A
20127586
GB
548
425
2
cloning artifact
MET
124
1NOP
B
20127586
GB
1
2
cloning artifact
GLY
125
1NOP
B
20127586
GB
2
2
cloning artifact
SER
126
1NOP
B
20127586
GB
3
2
cloning artifact
SER
127
1NOP
B
20127586
GB
4
2
cloning artifact
HIS
128
1NOP
B
20127586
GB
5
2
cloning artifact
HIS
129
1NOP
B
20127586
GB
6
2
cloning artifact
HIS
130
1NOP
B
20127586
GB
7
2
cloning artifact
HIS
131
1NOP
B
20127586
GB
8
2
cloning artifact
HIS
132
1NOP
B
20127586
GB
9
2
cloning artifact
HIS
133
1NOP
B
20127586
GB
10
2
cloning artifact
SER
134
1NOP
B
20127586
GB
11
2
cloning artifact
SER
135
1NOP
B
20127586
GB
12
2
cloning artifact
GLY
136
1NOP
B
20127586
GB
13
2
cloning artifact
LEU
137
1NOP
B
20127586
GB
14
2
cloning artifact
VAL
138
1NOP
B
20127586
GB
15
2
cloning artifact
PRO
139
1NOP
B
20127586
GB
16
2
cloning artifact
ARG
140
1NOP
B
20127586
GB
17
2
cloning artifact
GLY
141
1NOP
B
20127586
GB
18
2
cloning artifact
SER
142
1NOP
B
20127586
GB
19
2
cloning artifact
HIS
143
1NOP
B
20127586
GB
20
2
cloning artifact
MET
144
1NOP
B
20127586
GB
21
2
cloning artifact
LEU
145
1NOP
B
20127586
GB
22
2
cloning artifact
GLU
146
1NOP
B
20127586
GB
23
2
cloning artifact
ASP
147
1NOP
B
20127586
GB
24
2
cloning artifact
PRO
148
1NOP
B
20127586
GB
25
2
ASP
engineered mutation
ASN
322
1NOP
B
20127586
GB
322
199
2
MET
engineered mutation
THR
328
1NOP
B
20127586
GB
328
205
2
PHE
engineered mutation
LEU
548
1NOP
B
20127586
GB
548
425
7
7
5
3
7
7
5
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
PHE
166
C
PHE
43
A
LEU
168
C
LEU
45
A
GLY
295
C
GLY
172
A
LEU
298
C
LEU
175
A
LEU
275
C
LEU
152
A
HIS
280
C
HIS
157
A
MET
266
C
MET
143
A
TYR
271
C
TYR
148
A
LEU
196
C
LEU
73
A
PHE
202
C
PHE
79
A
ILE
224
C
ILE
101
A
HIS
228
C
HIS
105
A
ILE
248
C
ILE
125
A
GLN
252
C
GLN
129
A
TYR
353
C
TYR
230
A
SER
357
C
SER
234
A
GLU
538
C
GLU
415
A
PHE
543
C
PHE
420
A
LYS
506
C
LYS
383
A
THR
513
C
THR
390
A
THR
496
C
THR
373
A
PRO
500
C
PRO
377
A
VAL
394
C
VAL
271
A
GLN
397
C
GLN
274
A
LEU
437
C
LEU
314
A
ILE
440
C
ILE
317
A
PHE
477
C
PHE
354
A
HIS
478
C
HIS
355
A
TYR
353
C
TYR
230
A
SER
357
C
SER
234
A
GLU
538
C
GLU
415
A
PHE
543
C
PHE
420
A
LYS
506
C
LYS
383
A
THR
513
C
THR
390
A
PHE
553
C
PHE
430
A
VAL
555
C
VAL
432
A
THR
569
C
THR
446
A
PHE
570
C
PHE
447
A
GLY
360
C
GLY
237
A
PHE
362
C
PHE
239
A
GLN
531
C
GLN
408
A
ILE
534
C
ILE
411
A
ALA
524
C
ALA
401
A
GLU
526
C
GLU
403
B
PHE
166
D
PHE
43
B
LEU
168
D
LEU
45
B
GLY
295
D
GLY
172
B
LEU
298
D
LEU
175
B
LEU
275
D
LEU
152
B
HIS
280
D
HIS
157
B
MET
266
D
MET
143
B
TYR
271
D
TYR
148
B
LEU
196
D
LEU
73
B
PHE
202
D
PHE
79
B
ILE
224
D
ILE
101
B
HIS
228
D
HIS
105
B
ILE
248
D
ILE
125
B
GLN
252
D
GLN
129
B
TYR
353
D
TYR
230
B
SER
357
D
SER
234
B
GLU
538
D
GLU
415
B
PHE
543
D
PHE
420
B
LYS
506
D
LYS
383
B
THR
513
D
THR
390
B
LYS
495
D
LYS
372
B
PRO
500
D
PRO
377
B
VAL
394
D
VAL
271
B
GLN
397
D
GLN
274
B
LEU
437
D
LEU
314
B
ILE
440
D
ILE
317
B
PHE
477
D
PHE
354
B
HIS
478
D
HIS
355
B
TYR
353
D
TYR
230
B
SER
357
D
SER
234
B
GLU
538
D
GLU
415
B
PHE
543
D
PHE
420
B
LYS
506
D
LYS
383
B
THR
513
D
THR
390
B
PHE
553
D
PHE
430
B
VAL
555
D
VAL
432
B
THR
569
D
THR
446
B
PHE
570
D
PHE
447
B
GLY
360
D
GLY
237
B
PHE
362
D
PHE
239
B
GLN
531
D
GLN
408
B
ILE
534
D
ILE
411
B
ALA
524
D
ALA
401
B
GLU
526
D
GLU
403
BINDING SITE FOR RESIDUE VO4 A 699
A
VO4
699
Software
9
BINDING SITE FOR RESIDUE VO4 B 699
B
VO4
699
Software
8
A
HIS
263
C
HIS
140
9
1_555
A
LYS
265
C
LYS
142
9
1_555
A
ASN
283
C
ASN
160
9
1_555
A
HIS
493
C
HIS
370
9
1_555
A
LYS
495
C
LYS
372
9
1_555
A
ASN
516
C
ASN
393
9
1_555
A
HOH
728
I
HOH
9
1_555
C
TYR
723
E
TYR
4
9
1_555
D
DT
806
A
DT
6
9
1_555
B
TYR
204
D
TYR
81
8
1_555
B
HIS
263
D
HIS
140
8
1_555
B
LYS
265
D
LYS
142
8
1_555
B
ASN
283
D
ASN
160
8
1_555
B
HIS
493
D
HIS
370
8
1_555
B
LYS
495
D
LYS
372
8
1_555
B
ASN
516
D
ASN
393
8
1_555
F
DT
806
B
DT
6
8
1_555
19
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