1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Zheng, M. Han, X. Gao, X. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking To be Published 0353 Strand polarity of trinucleotide repeat sequences: NMR studies of parallel/anti-pararell duplex,{d(GAC)3}2 10.2210/pdb1np5/pdb pdb_00001np5 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 2749.826 5'-D(*GP*AP*CP*GP*AP*CP*GP*AP*C)-3' 2 syn polymer no no (DG)(DA)(DC)(DG)(DA)(DC)(DG)(DA)(DC) GACGACGAC A,B polydeoxyribonucleotide n n n n n n n n n -22.889 12 4 A 1 B 101 -179.998 A_DG1:DG101_B 1 -19.562 -3.205 -0.001 -7.847 -7.337 8 2 A 2 B 102 -179.993 A_DA2:DA102_B 2 19.030 -7.098 0.001 4.087 7.250 2 15 A 3 B 103 179.996 A_DC3:DC103_B 3 22.036 1.888 0.000 2.009 7.680 12 4 A 4 B 104 -179.999 A_DG4:DG104_B 4 -38.789 -3.486 0.000 -7.631 -12.959 8 2 A 5 B 105 -179.998 A_DA5:DA105_B 5 24.679 -6.298 0.000 4.673 -0.065 2 15 A 6 B 106 -179.996 A_DC6:DC106_B 6 -7.635 -2.040 0.000 -1.544 -24.869 12 4 A 7 B 107 179.996 A_DG7:DG107_B 7 37.158 3.370 0.000 7.490 32.920 7 2 A 8 B 108 180.000 A_DA8:DA108_B 8 -32.699 5.909 0.000 -4.869 4.240 2 15 A 9 B 109 -179.986 A_DC9:DC109_B 9 32.862 -1.573 0.000 -1.527 3.977 -1.385 A A 1 2 -0.082 B B 101 102 3.977 0.002 0.000 -0.001 AA_DG1DA2:DA102DG101_BB 1 0.000 -0.011 -1.385 -0.208 -0.022 2.416 -108.394 A A 2 3 -0.014 B B 102 103 2.416 0.023 0.000 0.000 AA_DA2DC3:DC103DA102_BB 2 0.004 0.003 -108.394 0.000 0.000 3.384 -118.820 A A 3 4 -0.002 B B 103 104 3.384 0.004 0.000 -0.001 AA_DC3DG4:DG104DC103_BB 3 0.014 0.008 -118.820 0.000 0.000 4.819 -8.935 A A 4 5 -0.022 B B 104 105 4.819 0.003 0.000 0.000 AA_DG4DA5:DA105DG104_BB 4 0.001 0.004 -8.935 -0.012 0.004 2.694 69.618 A A 5 6 -0.006 B B 105 106 2.694 -0.007 0.000 0.000 AA_DA5DC6:DC106DA105_BB 5 0.008 -0.007 69.618 0.000 0.000 2.852 -117.530 A A 6 7 -0.003 B B 106 107 2.852 0.005 0.000 0.000 AA_DC6DG7:DG107DC106_BB 6 -0.008 -0.005 -117.530 0.000 0.000 4.968 -10.452 A A 7 8 0.027 B B 107 108 4.968 -0.005 0.000 0.000 AA_DG7DA8:DA108DG107_BB 7 0.005 0.025 -10.452 0.012 0.011 3.131 -111.290 A A 8 9 -0.003 B B 108 109 3.131 0.006 0.000 0.000 AA_DA8DC9:DC109DA108_BB 8 -0.006 -0.003 -111.290 0.000 0.000 database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2003-02-11 1 1 2008-04-29 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name RCSB Y RCSB 2003-01-17 REL REL This sequence is found in triplet repeat expansion involving neurogenetic diseases. sample This structure was determined using standard 2D homonuclear techniques structures with the least restraint violations 10 1 2D NOESY 2D TOCSY DQF-COSY COSY-35 1H-31P COSY 4.7 ambient 273 K distance geometry, restraint molecular dynamics 1 minimized average structure 2 mM 5'-d(GACGACGAC), 0.1 M NaCl, 10 mM Sodium Phosphate, 0.1 mM EDTA 90 % H20, 10 % D2O Bruker processing UXNMR 940101 Accelrys processing Felix 95 Brunger structure solution X-PLOR 3.01 Borgias, B.A. refinement MARDIGRAS 3.0 600 Bruker AMX G 1 n 1 DG 1 A A 2 n 2 DA 2 A C 3 n 3 DC 3 A G 4 n 4 DG 4 A A 5 n 5 DA 5 A C 6 n 6 DC 6 A G 7 n 7 DG 7 A A 8 n 8 DA 8 A C 9 n 9 DC 9 A G 101 n 1 DG 101 B A 102 n 2 DA 102 B C 103 n 3 DC 103 B G 104 n 4 DG 104 B A 105 n 5 DA 105 B C 106 n 6 DC 106 B G 107 n 7 DG 107 B A 108 n 8 DA 108 B C 109 n 9 DC 109 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A B OP1 H21 DA DG 2 101 1.48 1 A B H21 OP1 DG DA 1 102 1.48 1 A A H2' O4' DA DC 8 9 1.54 1 B B H2' O4' DA DC 108 109 1.54 1 A DA 2 0.071 SIDE CHAIN 1 A DA 5 0.055 SIDE CHAIN 1 B DA 102 0.071 SIDE CHAIN 1 B DA 105 0.055 SIDE CHAIN 1 2.72 0.30 108.30 111.02 A A A O4' C1' N9 DG DG DG 1 1 1 N 1 4.64 0.50 113.10 117.74 A A A N7 C8 N9 DG DG DG 1 1 1 N 1 -2.98 0.40 106.40 103.42 A A A C8 N9 C4 DG DG DG 1 1 1 N 1 4.31 0.30 108.30 112.61 A A A O4' C1' N9 DA DA DA 2 2 2 N 1 4.13 0.50 113.80 117.93 A A A N7 C8 N9 DA DA DA 2 2 2 N 1 2.32 0.30 108.30 110.62 A A A O4' C1' N9 DG DG DG 4 4 4 N 1 4.77 0.50 113.10 117.87 A A A N7 C8 N9 DG DG DG 4 4 4 N 1 -2.54 0.40 106.40 103.86 A A A C8 N9 C4 DG DG DG 4 4 4 N 1 3.19 0.30 108.30 111.49 A A A O4' C1' N9 DA DA DA 5 5 5 N 1 3.93 0.50 113.80 117.73 A A A N7 C8 N9 DA DA DA 5 5 5 N 1 2.53 0.30 108.30 110.83 A A A O4' C1' N9 DG DG DG 7 7 7 N 1 4.84 0.50 113.10 117.94 A A A N7 C8 N9 DG DG DG 7 7 7 N 1 -2.49 0.40 106.40 103.91 A A A C8 N9 C4 DG DG DG 7 7 7 N 1 3.73 0.50 113.80 117.53 A A A N7 C8 N9 DA DA DA 8 8 8 N 1 2.85 0.30 108.30 111.15 A A A O4' C1' N1 DC DC DC 9 9 9 N 1 2.76 0.30 108.30 111.06 B B B O4' C1' N9 DG DG DG 101 101 101 N 1 4.69 0.50 113.10 117.79 B B B N7 C8 N9 DG DG DG 101 101 101 N 1 -3.03 0.40 106.40 103.37 B B B C8 N9 C4 DG DG DG 101 101 101 N 1 4.28 0.30 108.30 112.58 B B B O4' C1' N9 DA DA DA 102 102 102 N 1 4.09 0.50 113.80 117.89 B B B N7 C8 N9 DA DA DA 102 102 102 N 1 2.07 0.30 108.30 110.37 B B B O4' C1' N1 DC DC DC 103 103 103 N 1 2.33 0.30 108.30 110.63 B B B O4' C1' N9 DG DG DG 104 104 104 N 1 4.73 0.50 113.10 117.83 B B B N7 C8 N9 DG DG DG 104 104 104 N 1 -2.52 0.40 106.40 103.88 B B B C8 N9 C4 DG DG DG 104 104 104 N 1 3.18 0.30 108.30 111.48 B B B O4' C1' N9 DA DA DA 105 105 105 N 1 3.97 0.50 113.80 117.77 B B B N7 C8 N9 DA DA DA 105 105 105 N 1 2.46 0.30 108.30 110.76 B B B O4' C1' N9 DG DG DG 107 107 107 N 1 4.84 0.50 113.10 117.94 B B B N7 C8 N9 DG DG DG 107 107 107 N 1 -2.47 0.40 106.40 103.93 B B B C8 N9 C4 DG DG DG 107 107 107 N 1 3.68 0.50 113.80 117.48 B B B N7 C8 N9 DA DA DA 108 108 108 N 1 3.02 0.30 108.30 111.32 B B B O4' C1' N1 DC DC DC 109 109 109 N minimized average (GAC)3 parallel duplex 1 N N 1 N N hydrog TYPE_4_PAIR A DG 1 A N2 DG 1 1_555 B DG 101 B N3 DG 1 1_555 hydrog TYPE_4_PAIR A DG 1 A N3 DG 1 1_555 B DG 101 B N2 DG 1 1_555 hydrog TYPE_2_PAIR A DA 2 A N6 DA 2 1_555 B DA 102 B N7 DA 2 1_555 hydrog TYPE_2_PAIR A DA 2 A N7 DA 2 1_555 B DA 102 B N6 DA 2 1_555 hydrog TYPE_15_PAIR A DC 3 A N4 DC 3 1_555 B DC 103 B O2 DC 3 1_555 hydrog TYPE_15_PAIR A DC 3 A O2 DC 3 1_555 B DC 103 B N4 DC 3 1_555 hydrog TYPE_4_PAIR A DG 4 A N2 DG 4 1_555 B DG 104 B N3 DG 4 1_555 hydrog TYPE_4_PAIR A DG 4 A N3 DG 4 1_555 B DG 104 B N2 DG 4 1_555 hydrog TYPE_2_PAIR A DA 5 A N6 DA 5 1_555 B DA 105 B N7 DA 5 1_555 hydrog TYPE_2_PAIR A DA 5 A N7 DA 5 1_555 B DA 105 B N6 DA 5 1_555 hydrog TYPE_15_PAIR A DC 6 A N4 DC 6 1_555 B DC 106 B O2 DC 6 1_555 hydrog TYPE_15_PAIR A DC 6 A O2 DC 6 1_555 B DC 106 B N4 DC 6 1_555 hydrog TYPE_4_PAIR A DG 7 A N2 DG 7 1_555 B DG 107 B N3 DG 7 1_555 hydrog TYPE_4_PAIR A DG 7 A N3 DG 7 1_555 B DG 107 B N2 DG 7 1_555 hydrog TYPE_2_PAIR A DA 8 A N6 DA 8 1_555 B DA 108 B N7 DA 8 1_555 hydrog TYPE_2_PAIR A DA 8 A N7 DA 8 1_555 B DA 108 B N6 DA 8 1_555 hydrog TYPE_15_PAIR A DC 9 A N4 DC 9 1_555 B DC 109 B O2 DC 9 1_555 hydrog TYPE_15_PAIR A DC 9 A O2 DC 9 1_555 B DC 109 B N4 DC 9 1_555 DNA DNA trinucleotide repeat, parallel duplex, homo-basepair mismatch, NMR solution structure, DNA 1NP5 PDB 1 1NP5 1 9 1NP5 1 9 1NP5 A 1 1 9 101 109 1NP5 101 109 1NP5 B 1 1 9