0.37
13.460
-6.123
4.080
A
O5'
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1
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DG
1
1
1.00
1
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0.32
14.377
-5.262
4.759
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1
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DG
1
1
1.00
1
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0.23
14.276
-3.818
4.267
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1
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DG
1
1
1.00
1
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0.24
14.641
-3.696
2.870
A
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1
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A
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DG
1
1
1.00
1
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0.20
12.852
-3.287
4.412
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1
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1
1
1.00
1
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0.19
12.831
-2.081
5.189
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1
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1
1
1.00
1
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0.18
12.369
-3.044
3.005
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1
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1
1
1.00
1
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0.17
13.619
-2.949
2.171
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1
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DG
1
1
1.00
1
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0.18
13.437
-3.460
0.790
A
N9
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1
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A
N9
DG
1
1
1.00
1
N
0.22
13.139
-4.711
0.350
A
C8
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1
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C8
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1
1
1.00
1
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0.23
13.122
-4.911
-0.924
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1
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1
1
1.00
1
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0.20
13.440
-3.644
-1.417
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1
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1
1
1.00
1
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0.23
13.579
-3.198
-2.759
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1
ATOM
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C6
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1
1
1.00
1
C
0.26
13.453
-3.844
-3.795
A
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1
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1
1
1.00
1
O
0.24
13.902
-1.851
-2.817
A
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1
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1
1
1.00
1
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0.24
14.074
-1.031
-1.725
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1
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1
1
1.00
1
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0.29
14.369
0.236
-1.982
A
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1
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N2
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1
1
1.00
1
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0.20
13.949
-1.439
-0.460
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1
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1
1
1.00
1
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0.18
13.632
-2.749
-0.375
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1
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1
1
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0.38
15.394
-5.623
4.597
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1
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0.36
14.161
-5.287
5.829
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1
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1
1
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0.23
14.950
-3.203
4.860
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1
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12.218
-4.034
4.880
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1
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0.21
11.756
-3.881
2.670
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1
1
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0.18
11.805
-2.114
2.952
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1
1
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1
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0.18
13.902
-1.902
2.132
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1
1
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0.26
12.903
-5.514
1.041
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1
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1
1
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1
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0.29
14.011
-1.463
-3.741
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1
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1
1
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1
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0.34
14.465
0.552
-2.941
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1
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1
1
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1
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0.30
14.486
0.891
-1.220
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1
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1
1
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0.58
13.313
-6.884
4.648
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1
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0.18
14.008
-0.968
5.118
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2
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1
2
1.00
1
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0.21
14.341
-0.709
3.700
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2
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1
2
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0.23
15.072
-1.349
6.073
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13.247
0.318
5.692
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2
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11.827
0.271
5.783
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2
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0.17
11.195
1.656
5.699
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1
2
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0.16
11.705
2.399
4.569
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2
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1
2
1.00
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9.682
1.549
5.532
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2
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2
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0.19
8.985
2.148
6.616
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2
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9.357
2.307
4.296
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2
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0.15
10.602
2.895
3.776
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2
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1
2
1.00
1
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0.14
10.661
2.452
2.407
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2
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1
2
1.00
1
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0.15
10.661
1.190
1.967
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2
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C8
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1
2
1.00
1
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0.16
10.455
0.990
0.720
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2
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N7
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1
2
1.00
1
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0.15
10.283
2.291
0.259
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2
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1
2
1.00
1
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0.16
10.007
2.825
-0.999
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2
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1
2
1.00
1
C
0.19
9.800
2.081
-2.078
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2
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1
2
1.00
1
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0.17
9.900
4.154
-1.085
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2
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1
2
1.00
1
N
0.17
10.051
4.905
0.005
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2
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1
2
1.00
1
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0.16
10.310
4.508
1.232
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2
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1
2
1.00
1
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0.14
10.415
3.184
1.289
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2
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1
2
1.00
1
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0.20
11.556
-0.194
6.731
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2
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1
2
1.00
1
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0.18
11.451
-0.346
4.967
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2
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1
2
1.00
1
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0.19
11.417
2.205
6.613
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2
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1
2
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0.18
9.384
0.508
5.423
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2
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1
2
1.00
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8.945
1.685
3.517
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2
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1
2
1.00
1
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0.15
8.674
3.069
4.535
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2
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1
2
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1
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0.16
10.529
3.971
3.829
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2
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1
2
1.00
1
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0.16
10.713
0.371
2.674
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2
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1
2
1.00
1
H
0.21
9.605
2.520
-2.966
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H61
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2
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H61
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1
2
1.00
1
H
0.21
9.828
1.075
-2.006
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H62
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2
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H62
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1
2
1.00
1
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0.20
9.940
5.956
-0.122
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2
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1
2
1.00
1
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0.21
9.216
3.699
6.995
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3
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1
3
1.00
1
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0.25
10.631
3.866
7.399
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3
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1
3
1.00
1
O
0.27
8.150
4.094
7.945
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3
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1
3
1.00
1
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0.17
9.003
4.564
5.624
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3
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1
3
1.00
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0.16
7.803
5.338
5.452
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3
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1
3
1.00
1
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0.15
7.268
5.509
4.031
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3
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1
3
1.00
1
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0.13
7.686
4.467
3.135
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3
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1
3
1.00
1
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0.15
5.747
5.580
4.027
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3
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1
3
1.00
1
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0.17
5.275
6.743
3.315
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3
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1
3
1.00
1
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0.14
5.336
4.311
3.354
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3
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1
3
1.00
1
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0.12
6.525
3.892
2.520
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3
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1
3
1.00
1
C
0.12
6.639
2.454
2.496
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3
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1
3
1.00
1
N
0.13
6.917
1.827
1.290
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3
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DC
1
3
1.00
1
C
0.15
7.043
2.487
0.258
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3
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1
3
1.00
1
O
0.15
7.039
0.476
1.289
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3
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1
3
1.00
1
N
0.16
6.892
-0.217
2.421
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C4
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3
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C4
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1
3
1.00
1
C
0.18
7.025
-1.541
2.389
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3
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1
3
1.00
1
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0.15
6.601
0.449
3.661
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3
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1
3
1.00
1
C
0.14
6.487
1.779
3.644
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3
ATOM
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1
3
1.00
1
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0.19
7.993
6.290
5.829
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3
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1
3
1.00
1
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0.17
7.027
4.884
6.046
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3
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1
3
1.00
1
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0.17
7.630
6.466
3.656
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3
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1
3
1.00
1
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0.17
5.365
5.593
5.050
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3
ATOM
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1
3
1.00
1
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0.16
5.103
3.562
4.101
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3
ATOM
A
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DC
1
3
1.00
1
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0.14
4.496
4.453
2.730
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3
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1
3
1.00
1
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0.13
6.405
4.271
1.508
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3
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1
3
1.00
1
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0.21
7.227
-2.006
1.513
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H41
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3
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H41
DC
1
3
1.00
1
H
0.20
6.922
-2.081
3.236
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H42
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3
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A
H42
DC
1
3
1.00
1
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0.17
6.461
-0.099
4.571
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3
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H5
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1
3
1.00
1
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0.15
6.270
2.347
4.574
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H6
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3
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H6
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1
3
1.00
1
H
0.17
5.497
6.925
1.724
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P
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4
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P
DG
1
4
1.00
1
P
0.21
6.940
6.782
1.430
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4
ATOM
A
OP1
DG
1
4
1.00
1
O
0.24
4.776
8.144
1.294
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4
ATOM
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1
4
1.00
1
O
0.16
4.726
5.647
1.120
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4
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O5'
DG
1
4
1.00
1
O
0.14
4.599
5.459
-0.292
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4
ATOM
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C5'
DG
1
4
1.00
1
C
0.11
3.244
4.875
-0.653
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4
ATOM
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DG
1
4
1.00
1
C
0.12
3.114
3.555
-0.102
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4
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1
4
1.00
1
O
0.12
2.130
5.736
-0.090
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4
ATOM
A
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DG
1
4
1.00
1
C
0.15
1.186
6.081
-1.094
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4
ATOM
A
O3'
DG
1
4
1.00
1
O
0.12
1.517
4.927
1.010
A
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4
ATOM
A
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DG
1
4
1.00
1
C
0.11
2.011
3.505
0.813
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4
ATOM
A
C1'
DG
1
4
1.00
1
C
0.10
2.423
2.901
2.088
A
N9
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4
ATOM
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N9
DG
1
4
1.00
1
N
0.12
2.397
3.424
3.328
A
C8
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4
ATOM
A
C8
DG
1
4
1.00
1
C
0.14
2.793
2.679
4.306
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N7
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4
ATOM
A
N7
DG
1
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1.00
1
N
0.12
3.138
1.501
3.636
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C5
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4
ATOM
A
C5
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1
4
1.00
1
C
0.15
3.653
0.276
4.142
A
C6
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4
ATOM
A
C6
DG
1
4
1.00
1
C
0.19
3.920
-0.021
5.302
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O6
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4
ATOM
A
O6
DG
1
4
1.00
1
O
0.15
3.862
-0.642
3.127
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N1
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4
ATOM
A
N1
DG
1
4
1.00
1
N
0.15
3.613
-0.418
1.792
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C2
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4
ATOM
A
C2
DG
1
4
1.00
1
C
0.19
3.901
-1.408
0.968
A
N2
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4
ATOM
A
N2
DG
1
4
1.00
1
N
0.12
3.128
0.722
1.308
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N3
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4
ATOM
A
N3
DG
1
4
1.00
1
N
0.10
2.914
1.634
2.276
A
C4
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4
ATOM
A
C4
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1
4
1.00
1
C
0.17
5.372
4.775
-0.630
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H5'
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4
ATOM
A
H5'
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1
4
1.00
1
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0.17
4.718
6.417
-0.792
A
H5''
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4
ATOM
A
H5''
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1
4
1.00
1
H
0.13
3.147
4.821
-1.734
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4
ATOM
A
H4'
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1
4
1.00
1
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0.13
2.551
6.632
0.324
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4
ATOM
A
H3'
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1
4
1.00
1
H
0.14
1.859
5.314
1.961
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4
ATOM
A
H2'
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1
4
1.00
1
H
0.15
0.436
4.961
0.968
A
H2''
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4
ATOM
A
H2''
DG
1
4
1.00
1
H
0.13
1.219
2.911
0.374
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H1'
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4
ATOM
A
H1'
DG
1
4
1.00
1
H
0.13
2.086
4.453
3.485
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H8
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4
ATOM
A
H8
DG
1
4
1.00
1
H
0.18
4.222
-1.539
3.410
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4
ATOM
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1
4
1.00
1
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0.21
4.268
-2.277
1.327
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0.792
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1.995
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2.096
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3.181
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4.288
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2.866
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1.660
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1.548
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0.917
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3.591
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0.986
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1.397
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-1.232
2.414
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2.188
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3.678
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-2.897
3.930
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-3.765
3.047
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-3.286
1.793
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0.618
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1.702
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0.706
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-1.618
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0.700
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2
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0.096
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2
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2.593
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2
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-0.649
1.629
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2
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10.218
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2
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-3.318
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3
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10.672
-3.424
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3
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3
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3
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3
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3
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3
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3
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3
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O
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-3.642
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3
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-2.832
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3
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3
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-1.543
-1.609
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3
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-2.195
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3
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O
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3
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0.496
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3
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6.893
1.826
-2.709
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3
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6.543
-0.183
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103
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1
3
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3
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3
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3
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-5.338
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-4.385
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-3.455
4.232
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5
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5
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-4.578
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5
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5
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4.592
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5
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3.440
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N
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-1.660
2.152
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1.300
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0.363
2.141
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5
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1.693
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5
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2.162
0.699
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2.513
2.967
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5
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2.056
4.193
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5
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0.819
4.529
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5
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0.020
3.447
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5
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-6.426
3.677
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5
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5
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5.429
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5
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-3.695
3.461
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5
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-1.768
4.771
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5
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-2.602
6.140
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5
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-1.694
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5
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-2.691
1.857
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3.131
0.584
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5
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H
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1.546
-0.103
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5
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H
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2.777
5.008
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5
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-1.947
-4.613
6.855
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6
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-0.622
-5.179
7.196
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6
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O
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-3.177
-5.223
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6
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O
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-3.037
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6
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O
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-3.178
-2.344
7.335
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6
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C
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-3.180
-0.893
6.846
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6
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C
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-0.740
5.512
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6
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O
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-0.406
6.839
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6
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C
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-4.730
0.834
7.564
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6
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O
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-0.286
5.380
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6
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C
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-3.661
-0.183
4.644
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106
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DC
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C
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-3.682
-0.937
3.388
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N1
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6
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N
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-3.623
-0.240
2.192
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6
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C
0.22
-3.619
0.988
2.190
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O
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-3.564
-0.955
1.036
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N3
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6
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N
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-3.563
-2.293
1.057
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106
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C
0.20
-3.495
-2.960
-0.093
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N4
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1
6
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N
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-3.629
-3.009
2.295
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106
ATOM
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1
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1
C
0.12
-3.690
-2.289
3.425
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106
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6
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C
0.17
-3.437
-2.328
8.356
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6
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H
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-3.944
-2.901
6.799
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6
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H
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-2.601
-0.273
7.525
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6
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H
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-5.253
-1.163
7.301
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6
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H
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-5.498
-1.174
5.059
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DC
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6
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H
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-5.576
0.588
5.196
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6
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H
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-3.452
0.868
4.448
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106
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DC
1
6
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H
0.25
-3.447
-2.454
-0.967
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106
ATOM
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1
6
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1
H
0.21
-3.489
-3.969
-0.093
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H42
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106
ATOM
B
H42
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1
6
1.00
1
H
0.15
-3.613
-4.096
2.324
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106
ATOM
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1
6
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1
H
0.13
-3.755
-2.790
4.391
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106
ATOM
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H6
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6
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1
H
0.16
-4.704
2.265
6.829
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P
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107
ATOM
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P
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1
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1
P
0.19
-3.497
2.336
5.974
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OP1
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107
ATOM
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1
7
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O
0.23
-4.954
3.313
7.844
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107
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O
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-5.996
2.160
5.883
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107
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O
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-6.148
3.015
4.755
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107
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DG
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7
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C
0.13
-7.526
2.873
4.133
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107
ATOM
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1
7
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1
C
0.15
-7.543
1.791
3.180
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107
ATOM
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O
0.14
-8.559
2.580
5.215
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107
ATOM
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C
0.21
-9.536
3.612
5.353
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107
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DG
1
7
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1
O
0.15
-9.191
1.274
4.840
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107
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DG
1
7
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1
C
0.13
-8.552
0.826
3.532
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DG
107
ATOM
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C1'
DG
1
7
1.00
1
C
0.13
-7.964
-0.513
3.678
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N9
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107
ATOM
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N9
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1
7
1.00
1
N
0.14
-7.768
-1.228
4.800
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C8
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107
ATOM
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C8
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1
7
1.00
1
C
0.15
-7.257
-2.407
4.684
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N7
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107
ATOM
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N7
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1
7
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1
N
0.13
-7.081
-2.500
3.300
B
C5
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107
ATOM
B
C5
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1
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1.00
1
C
0.14
-6.553
-3.559
2.516
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C6
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107
ATOM
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C6
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1
7
1.00
1
C
0.18
-6.129
-4.648
2.890
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O6
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107
ATOM
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O6
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1
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1.00
1
O
0.14
-6.553
-3.243
1.167
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N1
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107
ATOM
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N1
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1
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1
N
0.14
-7.001
-2.058
0.630
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C2
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107
ATOM
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C2
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1
7
1.00
1
C
0.17
-6.913
-1.941
-0.689
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N2
DG
107
ATOM
B
N2
DG
1
7
1.00
1
N
0.13
-7.501
-1.055
1.356
B
N3
DG
107
ATOM
B
N3
DG
1
7
1.00
1
N
0.12
-7.512
-1.339
2.676
B
C4
DG
107
ATOM
B
C4
DG
1
7
1.00
1
C
0.17
-5.405
2.742
4.013
B
H5'
DG
107
ATOM
B
H5'
DG
1
7
1.00
1
H
0.17
-5.995
4.050
5.063
B
H5''
DG
107
ATOM
B
H5''
DG
1
7
1.00
1
H
0.15
-7.777
3.801
3.628
B
H4'
DG
107
ATOM
B
H4'
DG
1
7
1.00
1
H
0.17
-8.041
2.450
6.153
B
H3'
DG
107
ATOM
B
H3'
DG
1
7
1.00
1
H
0.16
-9.004
0.561
5.620
B
H2'
DG
107
ATOM
B
H2'
DG
1
7
1.00
1
H
0.18
-10.253
1.383
4.716
B
H2''
DG
107
ATOM
B
H2''
DG
1
7
1.00
1
H
0.16
-9.309
0.799
2.751
B
H1'
DG
107
ATOM
B
H1'
DG
1
7
1.00
1
H
0.16
-8.013
-0.806
5.770
B
H8
DG
107
ATOM
B
H8
DG
1
7
1.00
1
H
0.17
-6.190
-3.952
0.547
B
H1
DG
107
ATOM
B
H1
DG
1
7
1.00
1
H
0.19
-6.537
-2.697
-1.241
B
H21
DG
107
ATOM
B
H21
DG
1
7
1.00
1
H
0.20
-7.223
-1.092
-1.141
B
H22
DG
107
ATOM
B
H22
DG
1
7
1.00
1
H
0.27
-10.399
4.119
4.106
B
P
DA
108
ATOM
B
P
DA
1
8
1.00
1
P
0.39
-11.537
4.911
4.624
B
OP1
DA
108
ATOM
B
OP1
DA
1
8
1.00
1
O
0.35
-10.652
2.973
3.201
B
OP2
DA
108
ATOM
B
OP2
DA
1
8
1.00
1
O
0.21
-9.374
5.122
3.383
B
O5'
DA
108
ATOM
B
O5'
DA
1
8
1.00
1
O
0.20
-9.900
6.188
2.614
B
C5'
DA
108
ATOM
B
C5'
DA
1
8
1.00
1
C
0.20
-9.349
6.225
1.215
B
C4'
DA
108
ATOM
B
C4'
DA
1
8
1.00
1
C
0.20
-8.823
4.965
0.828
B
O4'
DA
108
ATOM
B
O4'
DA
1
8
1.00
1
O
0.19
-10.427
6.617
0.237
B
C3'
DA
108
ATOM
B
C3'
DA
1
8
1.00
1
C
0.22
-10.454
8.037
-0.028
B
O3'
DA
108
ATOM
B
O3'
DA
1
8
1.00
1
O
0.20
-10.120
5.804
-0.976
B
C2'
DA
108
ATOM
B
C2'
DA
1
8
1.00
1
C
0.20
-9.162
4.723
-0.533
B
C1'
DA
108
ATOM
B
C1'
DA
1
8
1.00
1
C
0.17
-9.742
3.400
-0.645
B
N9
DA
108
ATOM
B
N9
DA
1
8
1.00
1
N
0.15
-9.974
2.530
0.342
B
C8
DA
108
ATOM
B
C8
DA
1
8
1.00
1
C
0.14
-10.457
1.375
0.018
B
N7
DA
108
ATOM
B
N7
DA
1
8
1.00
1
N
0.15
-10.562
1.504
-1.377
B
C5
DA
108
ATOM
B
C5
DA
1
8
1.00
1
C
0.16
-11.009
0.644
-2.385
B
C6
DA
108
ATOM
B
C6
DA
1
8
1.00
1
C
0.17
-11.437
-0.592
-2.150
B
N6
DA
108
ATOM
B
N6
DA
1
8
1.00
1
N
0.19
-10.982
1.103
-3.650
B
N1
DA
108
ATOM
B
N1
DA
1
8
1.00
1
N
0.21
-10.538
2.335
-3.911
B
C2
DA
108
ATOM
B
C2
DA
1
8
1.00
1
C
0.20
-10.088
3.226
-3.038
B
N3
DA
108
ATOM
B
N3
DA
1
8
1.00
1
N
0.17
-10.128
2.743
-1.782
B
C4
DA
108
ATOM
B
C4
DA
1
8
1.00
1
C
0.25
-9.616
7.100
3.090
B
H5'
DA
108
ATOM
B
H5'
DA
1
8
1.00
1
H
0.20
-10.988
6.114
2.581
B
H5''
DA
108
ATOM
B
H5''
DA
1
8
1.00
1
H
0.24
-8.560
6.958
1.162
B
H4'
DA
108
ATOM
B
H4'
DA
1
8
1.00
1
H
0.18
-11.394
6.290
0.637
B
H3'
DA
108
ATOM
B
H3'
DA
1
8
1.00
1
H
0.20
-11.038
5.388
-1.376
B
H2'
DA
108
ATOM
B
H2'
DA
1
8
1.00
1
H
0.24
-9.636
6.404
-1.718
B
H2''
DA
108
ATOM
B
H2''
DA
1
8
1.00
1
H
0.23
-8.267
4.784
-1.122
B
H1'
DA
108
ATOM
B
H1'
DA
1
8
1.00
1
H
0.16
-9.774
2.817
1.384
B
H8
DA
108
ATOM
B
H8
DA
1
8
1.00
1
H
0.19
-11.750
-1.171
-2.915
B
H61
DA
108
ATOM
B
H61
DA
1
8
1.00
1
H
0.19
-11.444
-0.954
-1.206
B
H62
DA
108
ATOM
B
H62
DA
1
8
1.00
1
H
0.24
-10.567
2.652
-4.952
B
H2
DA
108
ATOM
B
H2
DA
1
8
1.00
1
H
0.24
-10.163
8.669
-1.494
B
P
DC
109
ATOM
B
P
DC
1
9
1.00
1
P
0.27
-8.828
8.206
-1.934
B
OP1
DC
109
ATOM
B
OP1
DC
1
9
1.00
1
O
0.30
-10.446
10.120
-1.430
B
OP2
DC
109
ATOM
B
OP2
DC
1
9
1.00
1
O
0.25
-11.265
7.973
-2.466
B
O5'
DC
109
ATOM
B
O5'
DC
1
9
1.00
1
O
0.22
-12.448
7.322
-1.968
B
C5'
DC
109
ATOM
B
C5'
DC
1
9
1.00
1
C
0.21
-12.812
6.074
-2.790
B
C4'
DC
109
ATOM
B
C4'
DC
1
9
1.00
1
C
0.19
-12.164
4.875
-2.301
B
O4'
DC
109
ATOM
B
O4'
DC
1
9
1.00
1
O
0.22
-14.304
5.803
-2.740
B
C3'
DC
109
ATOM
B
C3'
DC
1
9
1.00
1
C
0.26
-14.996
6.457
-3.808
B
O3'
DC
109
ATOM
B
O3'
DC
1
9
1.00
1
O
0.21
-14.423
4.309
-2.839
B
C2'
DC
109
ATOM
B
C2'
DC
1
9
1.00
1
C
0.19
-13.090
3.754
-2.378
B
C1'
DC
109
ATOM
B
C1'
DC
1
9
1.00
1
C
0.17
-13.243
3.092
-1.065
B
N1
DC
109
ATOM
B
N1
DC
1
9
1.00
1
N
0.18
-13.607
1.749
-1.046
B
C2
DC
109
ATOM
B
C2
DC
1
9
1.00
1
C
0.21
-13.780
1.133
-2.098
B
O2
DC
109
ATOM
B
O2
DC
1
9
1.00
1
O
0.19
-13.769
1.146
0.163
B
N3
DC
109
ATOM
B
N3
DC
1
9
1.00
1
N
0.17
-13.585
1.826
1.301
B
C4
DC
109
ATOM
B
C4
DC
1
9
1.00
1
C
0.21
-13.757
1.202
2.466
B
N4
DC
109
ATOM
B
N4
DC
1
9
1.00
1
N
0.17
-13.211
3.208
1.280
B
C5
DC
109
ATOM
B
C5
DC
1
9
1.00
1
C
0.16
-13.052
3.791
0.085
B
C6
DC
109
ATOM
B
C6
DC
1
9
1.00
1
C
0.25
-13.268
8.010
-2.020
B
H5'
DC
109
ATOM
B
H5'
DC
1
9
1.00
1
H
0.22
-12.300
7.047
-0.933
B
H5''
DC
109
ATOM
B
H5''
DC
1
9
1.00
1
H
0.24
-12.516
6.235
-3.826
B
H4'
DC
109
ATOM
B
H4'
DC
1
9
1.00
1
H
0.21
-14.698
6.129
-1.772
B
H3'
DC
109
ATOM
B
H3'
DC
1
9
1.00
1
H
0.76
-14.874
7.403
-3.692
B
HO3'
DC
109
ATOM
B
HO3'
DC
1
9
1.00
1
H
0.22
-15.220
3.949
-2.194
B
H2'
DC
109
ATOM
B
H2'
DC
1
9
1.00
1
H
0.25
-14.613
4.018
-3.872
B
H2''
DC
109
ATOM
B
H2''
DC
1
9
1.00
1
H
0.22
-12.727
3.032
-3.107
B
H1'
DC
109
ATOM
B
H1'
DC
1
9
1.00
1
H
0.24
-14.017
0.225
2.481
B
H41
DC
109
ATOM
B
H41
DC
1
9
1.00
1
H
0.23
-13.624
1.704
3.332
B
H42
DC
109
ATOM
B
H42
DC
1
9
1.00
1
H
0.19
-13.063
3.775
2.197
B
H5
DC
109
ATOM
B
H5
DC
1
9
1.00
1
H
0.18
-12.771
4.836
0.036
B
H6
DC
109
ATOM
B
H6
DC
1
9
1.00
1
H
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Zheng, M.
Han, X.
Gao, X.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
To be Published
0353
Strand polarity of trinucleotide repeat sequences:
NMR studies of parallel/anti-pararell duplex,{d(GAC)3}2
10.2210/pdb1np5/pdb
pdb_00001np5
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
2749.826
5'-D(*GP*AP*CP*GP*AP*CP*GP*AP*C)-3'
2
syn
polymer
no
no
(DG)(DA)(DC)(DG)(DA)(DC)(DG)(DA)(DC)
GACGACGAC
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
-22.889
12
4
A
1
B
101
-179.998
A_DG1:DG101_B
1
-19.562
-3.205
-0.001
-7.847
-7.337
8
2
A
2
B
102
-179.993
A_DA2:DA102_B
2
19.030
-7.098
0.001
4.087
7.250
2
15
A
3
B
103
179.996
A_DC3:DC103_B
3
22.036
1.888
0.000
2.009
7.680
12
4
A
4
B
104
-179.999
A_DG4:DG104_B
4
-38.789
-3.486
0.000
-7.631
-12.959
8
2
A
5
B
105
-179.998
A_DA5:DA105_B
5
24.679
-6.298
0.000
4.673
-0.065
2
15
A
6
B
106
-179.996
A_DC6:DC106_B
6
-7.635
-2.040
0.000
-1.544
-24.869
12
4
A
7
B
107
179.996
A_DG7:DG107_B
7
37.158
3.370
0.000
7.490
32.920
7
2
A
8
B
108
180.000
A_DA8:DA108_B
8
-32.699
5.909
0.000
-4.869
4.240
2
15
A
9
B
109
-179.986
A_DC9:DC109_B
9
32.862
-1.573
0.000
-1.527
3.977
-1.385
A
A
1
2
-0.082
B
B
101
102
3.977
0.002
0.000
-0.001
AA_DG1DA2:DA102DG101_BB
1
0.000
-0.011
-1.385
-0.208
-0.022
2.416
-108.394
A
A
2
3
-0.014
B
B
102
103
2.416
0.023
0.000
0.000
AA_DA2DC3:DC103DA102_BB
2
0.004
0.003
-108.394
0.000
0.000
3.384
-118.820
A
A
3
4
-0.002
B
B
103
104
3.384
0.004
0.000
-0.001
AA_DC3DG4:DG104DC103_BB
3
0.014
0.008
-118.820
0.000
0.000
4.819
-8.935
A
A
4
5
-0.022
B
B
104
105
4.819
0.003
0.000
0.000
AA_DG4DA5:DA105DG104_BB
4
0.001
0.004
-8.935
-0.012
0.004
2.694
69.618
A
A
5
6
-0.006
B
B
105
106
2.694
-0.007
0.000
0.000
AA_DA5DC6:DC106DA105_BB
5
0.008
-0.007
69.618
0.000
0.000
2.852
-117.530
A
A
6
7
-0.003
B
B
106
107
2.852
0.005
0.000
0.000
AA_DC6DG7:DG107DC106_BB
6
-0.008
-0.005
-117.530
0.000
0.000
4.968
-10.452
A
A
7
8
0.027
B
B
107
108
4.968
-0.005
0.000
0.000
AA_DG7DA8:DA108DG107_BB
7
0.005
0.025
-10.452
0.012
0.011
3.131
-111.290
A
A
8
9
-0.003
B
B
108
109
3.131
0.006
0.000
0.000
AA_DA8DC9:DC109DA108_BB
8
-0.006
-0.003
-111.290
0.000
0.000
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-02-11
1
1
2008-04-29
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
RCSB
Y
RCSB
2003-01-17
REL
REL
This sequence is found in triplet repeat expansion involving neurogenetic diseases.
sample
This structure was determined using standard 2D homonuclear techniques
structures with the least restraint violations
10
1
2D NOESY
2D TOCSY
DQF-COSY
COSY-35
1H-31P COSY
4.7
ambient
273
K
distance geometry, restraint molecular dynamics
1
minimized average structure
2 mM 5'-d(GACGACGAC), 0.1 M NaCl, 10 mM Sodium Phosphate, 0.1 mM EDTA
90 % H20, 10 % D2O
Bruker
processing
UXNMR
940101
Accelrys
processing
Felix
95
Brunger
structure solution
X-PLOR
3.01
Borgias, B.A.
refinement
MARDIGRAS
3.0
600
Bruker
AMX
G
1
n
1
DG
1
A
A
2
n
2
DA
2
A
C
3
n
3
DC
3
A
G
4
n
4
DG
4
A
A
5
n
5
DA
5
A
C
6
n
6
DC
6
A
G
7
n
7
DG
7
A
A
8
n
8
DA
8
A
C
9
n
9
DC
9
A
G
101
n
1
DG
101
B
A
102
n
2
DA
102
B
C
103
n
3
DC
103
B
G
104
n
4
DG
104
B
A
105
n
5
DA
105
B
C
106
n
6
DC
106
B
G
107
n
7
DG
107
B
A
108
n
8
DA
108
B
C
109
n
9
DC
109
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
B
OP1
H21
DA
DG
2
101
1.48
1
A
B
H21
OP1
DG
DA
1
102
1.48
1
A
A
H2'
O4'
DA
DC
8
9
1.54
1
B
B
H2'
O4'
DA
DC
108
109
1.54
1
A
DA
2
0.071
SIDE CHAIN
1
A
DA
5
0.055
SIDE CHAIN
1
B
DA
102
0.071
SIDE CHAIN
1
B
DA
105
0.055
SIDE CHAIN
1
2.72
0.30
108.30
111.02
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
1
4.64
0.50
113.10
117.74
A
A
A
N7
C8
N9
DG
DG
DG
1
1
1
N
1
-2.98
0.40
106.40
103.42
A
A
A
C8
N9
C4
DG
DG
DG
1
1
1
N
1
4.31
0.30
108.30
112.61
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
1
4.13
0.50
113.80
117.93
A
A
A
N7
C8
N9
DA
DA
DA
2
2
2
N
1
2.32
0.30
108.30
110.62
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
1
4.77
0.50
113.10
117.87
A
A
A
N7
C8
N9
DG
DG
DG
4
4
4
N
1
-2.54
0.40
106.40
103.86
A
A
A
C8
N9
C4
DG
DG
DG
4
4
4
N
1
3.19
0.30
108.30
111.49
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
1
3.93
0.50
113.80
117.73
A
A
A
N7
C8
N9
DA
DA
DA
5
5
5
N
1
2.53
0.30
108.30
110.83
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
1
4.84
0.50
113.10
117.94
A
A
A
N7
C8
N9
DG
DG
DG
7
7
7
N
1
-2.49
0.40
106.40
103.91
A
A
A
C8
N9
C4
DG
DG
DG
7
7
7
N
1
3.73
0.50
113.80
117.53
A
A
A
N7
C8
N9
DA
DA
DA
8
8
8
N
1
2.85
0.30
108.30
111.15
A
A
A
O4'
C1'
N1
DC
DC
DC
9
9
9
N
1
2.76
0.30
108.30
111.06
B
B
B
O4'
C1'
N9
DG
DG
DG
101
101
101
N
1
4.69
0.50
113.10
117.79
B
B
B
N7
C8
N9
DG
DG
DG
101
101
101
N
1
-3.03
0.40
106.40
103.37
B
B
B
C8
N9
C4
DG
DG
DG
101
101
101
N
1
4.28
0.30
108.30
112.58
B
B
B
O4'
C1'
N9
DA
DA
DA
102
102
102
N
1
4.09
0.50
113.80
117.89
B
B
B
N7
C8
N9
DA
DA
DA
102
102
102
N
1
2.07
0.30
108.30
110.37
B
B
B
O4'
C1'
N1
DC
DC
DC
103
103
103
N
1
2.33
0.30
108.30
110.63
B
B
B
O4'
C1'
N9
DG
DG
DG
104
104
104
N
1
4.73
0.50
113.10
117.83
B
B
B
N7
C8
N9
DG
DG
DG
104
104
104
N
1
-2.52
0.40
106.40
103.88
B
B
B
C8
N9
C4
DG
DG
DG
104
104
104
N
1
3.18
0.30
108.30
111.48
B
B
B
O4'
C1'
N9
DA
DA
DA
105
105
105
N
1
3.97
0.50
113.80
117.77
B
B
B
N7
C8
N9
DA
DA
DA
105
105
105
N
1
2.46
0.30
108.30
110.76
B
B
B
O4'
C1'
N9
DG
DG
DG
107
107
107
N
1
4.84
0.50
113.10
117.94
B
B
B
N7
C8
N9
DG
DG
DG
107
107
107
N
1
-2.47
0.40
106.40
103.93
B
B
B
C8
N9
C4
DG
DG
DG
107
107
107
N
1
3.68
0.50
113.80
117.48
B
B
B
N7
C8
N9
DA
DA
DA
108
108
108
N
1
3.02
0.30
108.30
111.32
B
B
B
O4'
C1'
N1
DC
DC
DC
109
109
109
N
minimized average
(GAC)3 parallel duplex
1
N
N
1
N
N
hydrog
TYPE_4_PAIR
A
DG
1
A
N2
DG
1
1_555
B
DG
101
B
N3
DG
1
1_555
hydrog
TYPE_4_PAIR
A
DG
1
A
N3
DG
1
1_555
B
DG
101
B
N2
DG
1
1_555
hydrog
TYPE_2_PAIR
A
DA
2
A
N6
DA
2
1_555
B
DA
102
B
N7
DA
2
1_555
hydrog
TYPE_2_PAIR
A
DA
2
A
N7
DA
2
1_555
B
DA
102
B
N6
DA
2
1_555
hydrog
TYPE_15_PAIR
A
DC
3
A
N4
DC
3
1_555
B
DC
103
B
O2
DC
3
1_555
hydrog
TYPE_15_PAIR
A
DC
3
A
O2
DC
3
1_555
B
DC
103
B
N4
DC
3
1_555
hydrog
TYPE_4_PAIR
A
DG
4
A
N2
DG
4
1_555
B
DG
104
B
N3
DG
4
1_555
hydrog
TYPE_4_PAIR
A
DG
4
A
N3
DG
4
1_555
B
DG
104
B
N2
DG
4
1_555
hydrog
TYPE_2_PAIR
A
DA
5
A
N6
DA
5
1_555
B
DA
105
B
N7
DA
5
1_555
hydrog
TYPE_2_PAIR
A
DA
5
A
N7
DA
5
1_555
B
DA
105
B
N6
DA
5
1_555
hydrog
TYPE_15_PAIR
A
DC
6
A
N4
DC
6
1_555
B
DC
106
B
O2
DC
6
1_555
hydrog
TYPE_15_PAIR
A
DC
6
A
O2
DC
6
1_555
B
DC
106
B
N4
DC
6
1_555
hydrog
TYPE_4_PAIR
A
DG
7
A
N2
DG
7
1_555
B
DG
107
B
N3
DG
7
1_555
hydrog
TYPE_4_PAIR
A
DG
7
A
N3
DG
7
1_555
B
DG
107
B
N2
DG
7
1_555
hydrog
TYPE_2_PAIR
A
DA
8
A
N6
DA
8
1_555
B
DA
108
B
N7
DA
8
1_555
hydrog
TYPE_2_PAIR
A
DA
8
A
N7
DA
8
1_555
B
DA
108
B
N6
DA
8
1_555
hydrog
TYPE_15_PAIR
A
DC
9
A
N4
DC
9
1_555
B
DC
109
B
O2
DC
9
1_555
hydrog
TYPE_15_PAIR
A
DC
9
A
O2
DC
9
1_555
B
DC
109
B
N4
DC
9
1_555
DNA
DNA trinucleotide repeat, parallel duplex, homo-basepair mismatch, NMR solution structure, DNA
1NP5
PDB
1
1NP5
1
9
1NP5
1
9
1NP5
A
1
1
9
101
109
1NP5
101
109
1NP5
B
1
1
9