0.017164 0.000000 0.000000 0.000000 0.011434 0.000000 0.000000 0.000000 0.021547 0.00000 0.00000 0.00000 Smith III, A.B. Hirschmann, R. Pasternak, A. Yao, W. Sprengeler, P.A. Holloway, M.K. Kuo, L.C. Chen, Z. Darke, P.L. Schleif, W.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90 90 90 58.26 87.46 46.41 C36 H43 N3 O7 629.743 (3S)-TETRAHYDROFURAN-3-YL (1R,2S)-3-[4-((1R)-2-{[(S)-AMINO(HYDROXY)METHYL]OXY}-2,3-DIHYDRO-1H-INDEN-1-YL)-2-BENZYL-3-OXOPYRROLIDIN-2-YL]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N O N 2 S C N 3 N O N 4 R C N 5 N C Y 6 N C Y 7 N C Y 8 N C Y 9 N C Y 10 N C Y 11 N C N 12 S C N 13 R C N 14 N C N 15 N O N 16 S C N 17 N N N 18 N C N 19 N C Y 20 N C Y 21 N C Y 22 N C Y 23 N C Y 24 N C Y 25 N C N 26 N C N 27 S C N 28 N O N 29 S C N 30 N N N 31 N C N 32 N O N 33 N O N 34 S C N 35 N C N 36 N O N 37 N C N 38 N C N 39 N C Y 40 N C Y 41 N C Y 42 N C Y 43 N C Y 44 N C Y 45 N C N 46 N N N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N N N 91 S C N 92 N C N 93 N O N 94 N C N 95 N O N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N N N 104 S C N 105 N C N 106 N O N 107 N C N 108 N C N 109 N C N 110 N N N 111 N C N 112 N N N 113 N N N 114 N O N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N N N 131 S C N 132 N C N 133 N O N 134 N C N 135 N C N 136 N O N 137 N N N 138 N O N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 N C N 152 N C N 153 N O N 154 N O N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N N N 164 R C N 165 N C N 166 N O N 167 N C N 168 N S N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N N N 178 S C N 179 N C N 180 N O N 181 N C N 182 N C N 183 N C N 184 N O N 185 N N N 186 N O N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N N N 198 S C N 199 N C N 200 N O N 201 N C N 202 N C N 203 N C N 204 N O N 205 N O N 206 N O N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 N C N 218 N C N 219 N O N 220 N O N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N N N 227 S C N 228 N C N 229 N O N 230 N C Y 231 N C Y 232 N N Y 233 N C Y 234 N C Y 235 N N N 236 N O N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N O N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 S C N 255 N C N 256 N C N 257 N C N 258 N O N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N N N 273 S C N 274 N C N 275 N O N 276 N C N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N N N 295 S C N 296 N C N 297 N O N 298 N C N 299 N C N 300 N C N 301 N C N 302 N N N 303 N O N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N N N 320 S C N 321 N C N 322 N O N 323 N C N 324 N C N 325 N S N 326 N C N 327 N O N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N N N 340 S C N 341 N C N 342 N O N 343 N C Y 344 N C Y 345 N C Y 346 N C Y 347 N C Y 348 N C Y 349 N C N 350 N O N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N N N 363 S C N 364 N C N 365 N O N 366 N C N 367 N C N 368 N C N 369 N O N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N N N 380 S C N 381 N C N 382 N O N 383 N C N 384 N O N 385 N O N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N N N 394 S C N 395 N C N 396 N O N 397 R C N 398 N O N 399 N C N 400 N O N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N N N 411 S C N 412 N C N 413 N O N 414 N C Y 415 N C Y 416 N C Y 417 N C Y 418 N N Y 419 N C Y 420 N C Y 421 N C Y 422 N C Y 423 N C N 424 N O N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N N N 438 S C N 439 N C N 440 N O N 441 N C Y 442 N C Y 443 N C Y 444 N C Y 445 N C Y 446 N C Y 447 N C N 448 N O N 449 N O N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N N N 462 S C N 463 N C N 464 N O N 465 N C N 466 N C N 467 N C N 468 N O N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing Y 13 N doub Y 14 N sing Y 15 N sing N 16 N sing Y 17 N doub N 18 N sing Y 19 N sing N 20 N sing Y 21 N doub N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N doub N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing Y 41 N doub Y 42 N sing Y 43 N sing N 44 N sing Y 45 N doub N 46 N sing Y 47 N sing N 48 N sing Y 49 N doub N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing Y 82 N doub Y 83 N sing Y 84 N sing N 85 N sing Y 86 N doub N 87 N sing Y 88 N sing N 89 N sing Y 90 N doub N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N doub N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N doub N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N doub N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N doub N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N doub N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N doub N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N doub N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N doub N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N doub N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N doub N 230 N sing N 231 N sing N 232 N sing N 233 N sing Y 234 N sing Y 235 N doub Y 236 N doub N 237 N sing Y 238 N sing N 239 N sing Y 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N doub N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N doub N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N doub N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N doub N 338 N sing N 339 N sing N 340 N sing N 341 N sing Y 342 N doub Y 343 N sing Y 344 N sing N 345 N sing Y 346 N doub N 347 N sing Y 348 N doub N 349 N sing Y 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N doub N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N doub N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N doub N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N doub N 407 N sing N 408 N sing N 409 N sing N 410 N sing Y 411 N doub Y 412 N sing Y 413 N sing N 414 N sing Y 415 N doub Y 416 N sing Y 417 N sing N 418 N sing Y 419 N sing Y 420 N doub N 421 N sing Y 422 N doub N 423 N sing Y 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N doub N 435 N sing N 436 N sing N 437 N sing N 438 N sing Y 439 N doub Y 440 N sing Y 441 N sing N 442 N sing Y 443 N doub N 444 N sing Y 445 N doub N 446 N sing Y 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N doub N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing US J.MED.CHEM. JMCMAR 0151 0022-2623 40 2440 2444 10.1021/jm970195u 9258349 An orally bioavailable pyrrolinone inhibitor of HIV-1 protease: computational analysis and X-ray crystal structure of the enzyme complex. 1997 10.2210/pdb1npa/pdb pdb_00001npa 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 293 1 IMAGE PLATE 1995-01-01 RIGAKU RAXIS II SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 10803.756 POL polyprotein 3.4.23.16 protease, residue 69-167 2 man polymer 629.743 (3S)-TETRAHYDROFURAN-3-YL (1R,2S)-3-[4-((1R)-2-{[(S)-AMINO(HYDROXY)METHYL]OXY}-2,3-DIHYDRO-1H-INDEN-1-YL)-2-BENZYL-3-OXOPYRROLIDIN-2-YL]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE 1 syn non-polymer 18.015 water 124 nat water Retropepsin no no PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lentivirus Escherichia sample POL 11676 Human immunodeficiency virus 1 562 Escherichia coli 1 2.73 55.02 VAPOR DIFFUSION, HANGING DROP 5.4 0.1 M NaAc, 0.5 M NaCl, 1mM DTT, 3mM NaN3, pH 5.4, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 software chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Version format compliance Refinement description Data collection Database references Derived calculations 1 0 2004-01-27 1 1 2008-04-29 1 2 2011-07-13 1 3 2017-10-11 1 4 2024-02-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2003-01-17 REL 3NH (3S)-TETRAHYDROFURAN-3-YL (1R,2S)-3-[4-((1R)-2-{[(S)-AMINO(HYDROXY)METHYL]OXY}-2,3-DIHYDRO-1H-INDEN-1-YL)-2-BENZYL-3-OXOPYRROLIDIN-2-YL]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE HOH water INH 1 2 3NH 3NH 100 A WAT 304 3 HOH HOH 304 A WAT 305 3 HOH HOH 305 A WAT 309 3 HOH HOH 309 A WAT 311 3 HOH HOH 311 A WAT 312 3 HOH HOH 312 A WAT 313 3 HOH HOH 313 A WAT 319 3 HOH HOH 319 A WAT 320 3 HOH HOH 320 A WAT 321 3 HOH HOH 321 A WAT 322 3 HOH HOH 322 A WAT 325 3 HOH HOH 325 A WAT 327 3 HOH HOH 327 A WAT 328 3 HOH HOH 328 A WAT 330 3 HOH HOH 330 A WAT 331 3 HOH HOH 331 A WAT 333 3 HOH HOH 333 A WAT 337 3 HOH HOH 337 A WAT 338 3 HOH HOH 338 A WAT 344 3 HOH HOH 344 A WAT 345 3 HOH HOH 345 A WAT 350 3 HOH HOH 350 A WAT 366 3 HOH HOH 366 A WAT 367 3 HOH HOH 367 A WAT 368 3 HOH HOH 368 A WAT 369 3 HOH HOH 369 A WAT 370 3 HOH HOH 370 A WAT 371 3 HOH HOH 371 A WAT 375 3 HOH HOH 375 A WAT 376 3 HOH HOH 376 A WAT 377 3 HOH HOH 377 A WAT 378 3 HOH HOH 378 A WAT 380 3 HOH HOH 380 A WAT 382 3 HOH HOH 382 A WAT 383 3 HOH HOH 383 A WAT 384 3 HOH HOH 384 A WAT 385 3 HOH HOH 385 A WAT 389 3 HOH HOH 389 A WAT 390 3 HOH HOH 390 A WAT 391 3 HOH HOH 391 A WAT 393 3 HOH HOH 393 A WAT 397 3 HOH HOH 397 A WAT 399 3 HOH HOH 399 A WAT 401 3 HOH HOH 401 A WAT 403 3 HOH HOH 403 A WAT 404 3 HOH HOH 404 A WAT 405 3 HOH HOH 405 A WAT 406 3 HOH HOH 406 A WAT 407 3 HOH HOH 407 A WAT 410 3 HOH HOH 410 A WAT 411 3 HOH HOH 411 A WAT 412 3 HOH HOH 412 A WAT 413 3 HOH HOH 413 A WAT 414 3 HOH HOH 414 A WAT 416 3 HOH HOH 416 A WAT 417 3 HOH HOH 417 A WAT 422 3 HOH HOH 422 A WAT 425 3 HOH HOH 425 A WAT 302 3 HOH HOH 302 B WAT 303 3 HOH HOH 303 B WAT 306 3 HOH HOH 306 B WAT 307 3 HOH HOH 307 B WAT 308 3 HOH HOH 308 B WAT 310 3 HOH HOH 310 B WAT 314 3 HOH HOH 314 B WAT 315 3 HOH HOH 315 B WAT 316 3 HOH HOH 316 B WAT 317 3 HOH HOH 317 B WAT 318 3 HOH HOH 318 B WAT 323 3 HOH HOH 323 B WAT 324 3 HOH HOH 324 B WAT 326 3 HOH HOH 326 B WAT 329 3 HOH HOH 329 B WAT 332 3 HOH HOH 332 B WAT 334 3 HOH HOH 334 B WAT 335 3 HOH HOH 335 B WAT 336 3 HOH HOH 336 B WAT 339 3 HOH HOH 339 B WAT 340 3 HOH HOH 340 B WAT 341 3 HOH HOH 341 B WAT 342 3 HOH HOH 342 B WAT 343 3 HOH HOH 343 B WAT 346 3 HOH HOH 346 B WAT 347 3 HOH HOH 347 B WAT 348 3 HOH HOH 348 B WAT 349 3 HOH HOH 349 B WAT 351 3 HOH HOH 351 B WAT 352 3 HOH HOH 352 B WAT 353 3 HOH HOH 353 B WAT 354 3 HOH HOH 354 B WAT 355 3 HOH HOH 355 B WAT 356 3 HOH HOH 356 B WAT 357 3 HOH HOH 357 B WAT 358 3 HOH HOH 358 B WAT 359 3 HOH HOH 359 B WAT 360 3 HOH HOH 360 B WAT 361 3 HOH HOH 361 B WAT 362 3 HOH HOH 362 B WAT 363 3 HOH HOH 363 B WAT 364 3 HOH HOH 364 B WAT 365 3 HOH HOH 365 B WAT 372 3 HOH HOH 372 B WAT 373 3 HOH HOH 373 B WAT 374 3 HOH HOH 374 B WAT 379 3 HOH HOH 379 B WAT 381 3 HOH HOH 381 B WAT 386 3 HOH HOH 386 B WAT 387 3 HOH HOH 387 B WAT 388 3 HOH HOH 388 B WAT 392 3 HOH HOH 392 B WAT 394 3 HOH HOH 394 B WAT 395 3 HOH HOH 395 B WAT 396 3 HOH HOH 396 B WAT 398 3 HOH HOH 398 B WAT 400 3 HOH HOH 400 B WAT 402 3 HOH HOH 402 B WAT 408 3 HOH HOH 408 B WAT 409 3 HOH HOH 409 B WAT 415 3 HOH HOH 415 B WAT 418 3 HOH HOH 418 B WAT 419 3 HOH HOH 419 B WAT 420 3 HOH HOH 420 B WAT 421 3 HOH HOH 421 B WAT 423 3 HOH HOH 423 B WAT 424 3 HOH HOH 424 B PRO 1 n 1 PRO 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A THR 4 n 4 THR 4 A LEU 5 n 5 LEU 5 A TRP 6 n 6 TRP 6 A GLN 7 n 7 GLN 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A LEU 10 n 10 LEU 10 A VAL 11 n 11 VAL 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A LYS 14 n 14 LYS 14 A ILE 15 n 15 ILE 15 A GLY 16 n 16 GLY 16 A GLY 17 n 17 GLY 17 A GLN 18 n 18 GLN 18 A LEU 19 n 19 LEU 19 A LYS 20 n 20 LYS 20 A GLU 21 n 21 GLU 21 A ALA 22 n 22 ALA 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASP 25 n 25 ASP 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A ASP 30 n 30 ASP 30 A THR 31 n 31 THR 31 A VAL 32 n 32 VAL 32 A LEU 33 n 33 LEU 33 A GLU 34 n 34 GLU 34 A GLU 35 n 35 GLU 35 A MET 36 n 36 MET 36 A SER 37 n 37 SER 37 A LEU 38 n 38 LEU 38 A PRO 39 n 39 PRO 39 A GLY 40 n 40 GLY 40 A ARG 41 n 41 ARG 41 A TRP 42 n 42 TRP 42 A LYS 43 n 43 LYS 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A MET 46 n 46 MET 46 A ILE 47 n 47 ILE 47 A GLY 48 n 48 GLY 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A GLY 52 n 52 GLY 52 A PHE 53 n 53 PHE 53 A ILE 54 n 54 ILE 54 A LYS 55 n 55 LYS 55 A VAL 56 n 56 VAL 56 A ARG 57 n 57 ARG 57 A GLN 58 n 58 GLN 58 A TYR 59 n 59 TYR 59 A ASP 60 n 60 ASP 60 A GLN 61 n 61 GLN 61 A ILE 62 n 62 ILE 62 A LEU 63 n 63 LEU 63 A ILE 64 n 64 ILE 64 A GLU 65 n 65 GLU 65 A ILE 66 n 66 ILE 66 A CYS 67 n 67 CYS 67 A GLY 68 n 68 GLY 68 A HIS 69 n 69 HIS 69 A LYS 70 n 70 LYS 70 A ALA 71 n 71 ALA 71 A ILE 72 n 72 ILE 72 A GLY 73 n 73 GLY 73 A THR 74 n 74 THR 74 A VAL 75 n 75 VAL 75 A LEU 76 n 76 LEU 76 A VAL 77 n 77 VAL 77 A GLY 78 n 78 GLY 78 A PRO 79 n 79 PRO 79 A THR 80 n 80 THR 80 A PRO 81 n 81 PRO 81 A VAL 82 n 82 VAL 82 A ASN 83 n 83 ASN 83 A ILE 84 n 84 ILE 84 A ILE 85 n 85 ILE 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A ASN 88 n 88 ASN 88 A LEU 89 n 89 LEU 89 A LEU 90 n 90 LEU 90 A THR 91 n 91 THR 91 A GLN 92 n 92 GLN 92 A ILE 93 n 93 ILE 93 A GLY 94 n 94 GLY 94 A CYS 95 n 95 CYS 95 A THR 96 n 96 THR 96 A LEU 97 n 97 LEU 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A PRO 201 n 1 PRO 1 B GLN 202 n 2 GLN 2 B ILE 203 n 3 ILE 3 B THR 204 n 4 THR 4 B LEU 205 n 5 LEU 5 B TRP 206 n 6 TRP 6 B GLN 207 n 7 GLN 7 B ARG 208 n 8 ARG 8 B PRO 209 n 9 PRO 9 B LEU 210 n 10 LEU 10 B VAL 211 n 11 VAL 11 B THR 212 n 12 THR 12 B ILE 213 n 13 ILE 13 B LYS 214 n 14 LYS 14 B ILE 215 n 15 ILE 15 B GLY 216 n 16 GLY 16 B GLY 217 n 17 GLY 17 B GLN 218 n 18 GLN 18 B LEU 219 n 19 LEU 19 B LYS 220 n 20 LYS 20 B GLU 221 n 21 GLU 21 B ALA 222 n 22 ALA 22 B LEU 223 n 23 LEU 23 B LEU 224 n 24 LEU 24 B ASP 225 n 25 ASP 25 B THR 226 n 26 THR 26 B GLY 227 n 27 GLY 27 B ALA 228 n 28 ALA 28 B ASP 229 n 29 ASP 29 B ASP 230 n 30 ASP 30 B THR 231 n 31 THR 31 B VAL 232 n 32 VAL 32 B LEU 233 n 33 LEU 33 B GLU 234 n 34 GLU 34 B GLU 235 n 35 GLU 35 B MET 236 n 36 MET 36 B SER 237 n 37 SER 37 B LEU 238 n 38 LEU 38 B PRO 239 n 39 PRO 39 B GLY 240 n 40 GLY 40 B ARG 241 n 41 ARG 41 B TRP 242 n 42 TRP 42 B LYS 243 n 43 LYS 43 B PRO 244 n 44 PRO 44 B LYS 245 n 45 LYS 45 B MET 246 n 46 MET 46 B ILE 247 n 47 ILE 47 B GLY 248 n 48 GLY 48 B GLY 249 n 49 GLY 49 B ILE 250 n 50 ILE 50 B GLY 251 n 51 GLY 51 B GLY 252 n 52 GLY 52 B PHE 253 n 53 PHE 53 B ILE 254 n 54 ILE 54 B LYS 255 n 55 LYS 55 B VAL 256 n 56 VAL 56 B ARG 257 n 57 ARG 57 B GLN 258 n 58 GLN 58 B TYR 259 n 59 TYR 59 B ASP 260 n 60 ASP 60 B GLN 261 n 61 GLN 61 B ILE 262 n 62 ILE 62 B LEU 263 n 63 LEU 63 B ILE 264 n 64 ILE 64 B GLU 265 n 65 GLU 65 B ILE 266 n 66 ILE 66 B CYS 267 n 67 CYS 67 B GLY 268 n 68 GLY 68 B HIS 269 n 69 HIS 69 B LYS 270 n 70 LYS 70 B ALA 271 n 71 ALA 71 B ILE 272 n 72 ILE 72 B GLY 273 n 73 GLY 73 B THR 274 n 74 THR 74 B VAL 275 n 75 VAL 75 B LEU 276 n 76 LEU 76 B VAL 277 n 77 VAL 77 B GLY 278 n 78 GLY 78 B PRO 279 n 79 PRO 79 B THR 280 n 80 THR 80 B PRO 281 n 81 PRO 81 B VAL 282 n 82 VAL 82 B ASN 283 n 83 ASN 83 B ILE 284 n 84 ILE 84 B ILE 285 n 85 ILE 85 B GLY 286 n 86 GLY 86 B ARG 287 n 87 ARG 87 B ASN 288 n 88 ASN 88 B LEU 289 n 89 LEU 89 B LEU 290 n 90 LEU 90 B THR 291 n 91 THR 91 B GLN 292 n 92 GLN 92 B ILE 293 n 93 ILE 93 B GLY 294 n 94 GLY 94 B CYS 295 n 95 CYS 95 B THR 296 n 96 THR 96 B LEU 297 n 97 LEU 97 B ASN 298 n 98 ASN 98 B PHE 299 n 99 PHE 99 B author_and_software_defined_assembly PISA 2 dimeric 4960 -32 9260 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 3 A N ILE 3 B O LEU 97 B O LEU 97 B O ASN 98 B O ASN 98 A N THR 96 A N THR 96 A O LEU 97 A O LEU 97 B N ILE 3 B N ILE 3 A N ILE 15 A N ILE 15 A O GLN 18 A O GLN 18 A N LEU 23 A N LEU 23 A O ASN 83 A O ASN 83 A N ILE 84 A N ILE 84 A O VAL 32 A O VAL 32 A N LEU 33 A N LEU 33 A O LEU 76 A O LEU 76 A O VAL 77 A O VAL 77 A N ARG 57 A N ARG 57 A N GLN 58 A N GLN 58 A O LYS 43 A O LYS 43 A N GLY 49 A N GLY 49 A O GLY 52 A O GLY 52 A N GLU 65 A N GLU 65 A O LYS 14 A O LYS 14 B N ILE 15 B N ILE 15 B O GLN 18 B O GLN 18 B O LEU 23 B O LEU 23 B N ILE 85 B N ILE 85 B N ILE 84 B N ILE 84 B O VAL 32 B O VAL 32 B N LEU 33 B N LEU 33 B O LEU 76 B O LEU 76 B O VAL 77 B O VAL 77 B N ARG 57 B N ARG 57 B N GLN 58 B N GLN 58 B O LYS 43 B O LYS 43 B N GLY 49 B N GLY 49 B O GLY 52 B O GLY 52 B O GLU 65 B O GLU 65 B N LYS 14 B N LYS 14 1 A C1 3NH 100 PLANAR 1 A C35 3NH 100 PLANAR 1 A C44 3NH 100 PLANAR 1 A A CA O ILE HOH 62 367 1.73 1 A A O O GLN HOH 61 367 2.10 1 -10.35 1.40 111.50 101.15 A A A CA N CD PRO PRO PRO 1 1 1 N 1 -10.84 1.40 111.50 100.66 B B B CA N CD PRO PRO PRO 1 1 1 N 1 -4.04 0.50 120.30 116.26 B B B NE CZ NH1 ARG ARG ARG 41 41 41 N 1 A B CB OE1 GLN GLN 61 2 1.05 1_555 2_565 1 A B CD NE2 GLN GLN 61 2 1.11 1_555 2_565 1 A B OE1 NE2 GLN GLN 61 2 1.30 1_555 2_565 1 A B NZ CB LYS GLN 70 7 1.44 1_555 2_565 1 A B CB CD GLN GLN 61 2 1.46 1_555 2_565 1 A B CG NE2 GLN GLN 61 2 1.50 1_555 2_565 1 A A NE2 ND2 GLN ASN 61 98 1.65 1_555 2_565 1 A B NZ CG LYS GLN 70 7 1.65 1_555 2_565 1 A B CA OE1 GLN GLN 61 2 1.73 1_555 2_565 1 A B CG CD GLN GLN 61 2 1.74 1_555 2_565 1 A B CB NE2 GLN GLN 61 2 1.78 1_555 2_565 1 A B CD CD GLN GLN 61 2 1.94 1_555 2_565 1 A B CG OE1 GLN GLN 61 2 2.16 1_555 2_565 1 A GLU 35 -39.29 117.07 0.183 0.183 0.183 2 6 12556 11799 1 3 FOURIER SYNTHESIS 2 6 124 2014 46 0 1844 2 15 1NPA 15398 12556 3.0 0.623 1 81.5 model building X-PLOR refinement X-PLOR 3.1 phasing X-PLOR crystal structure of HIV-1 protease-hup 1 N N 1 N N 2 N N 3 N N 3 N N A GLY 86 A GLY 86 HELX_P A THR 91 A THR 91 1 1 6 A GLN 92 A GLN 92 HELX_P A GLY 94 A GLY 94 5 2 3 B GLY 86 B GLY 86 HELX_P B THR 91 B THR 91 1 3 6 HYDROLASE protease, HIV, Aspartyl protease, hydrolase POL_HV1PV UNP 1 69 P03368 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF 69 167 1NPA 1 99 P03368 A 1 1 99 69 167 1NPA 1 99 P03368 B 1 1 99 4 9 9 anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLN 2 A GLN 2 A THR 4 A THR 4 B THR 96 B THR 96 B ASN 98 B ASN 98 A THR 96 A THR 96 A ASN 98 A ASN 98 B GLN 2 B GLN 2 B THR 4 B THR 4 A LEU 10 A LEU 10 A ILE 15 A ILE 15 A GLN 18 A GLN 18 A LEU 24 A LEU 24 A ASN 83 A ASN 83 A ILE 85 A ILE 85 A VAL 32 A VAL 32 A LEU 33 A LEU 33 A HIS 69 A HIS 69 A VAL 77 A VAL 77 A GLY 52 A GLY 52 A ILE 66 A ILE 66 A LYS 43 A LYS 43 A GLY 49 A GLY 49 A GLY 52 A GLY 52 A ILE 66 A ILE 66 A LEU 10 A LEU 10 A ILE 15 A ILE 15 B LEU 10 B LEU 10 B ILE 15 B ILE 15 B GLN 18 B GLN 18 B LEU 24 B LEU 24 B ILE 84 B ILE 84 B ILE 85 B ILE 85 B VAL 32 B VAL 32 B LEU 33 B LEU 33 B HIS 69 B HIS 69 B VAL 77 B VAL 77 B GLY 52 B GLY 52 B ILE 66 B ILE 66 B LYS 43 B LYS 43 B GLY 49 B GLY 49 B GLY 52 B GLY 52 B ILE 66 B ILE 66 B LEU 10 B LEU 10 B ILE 15 B ILE 15 BINDING SITE FOR RESIDUE 3NH A 100 A 3NH 100 Software 21 A ASP 25 A ASP 25 21 1_555 A GLY 27 A GLY 27 21 1_555 A ALA 28 A ALA 28 21 1_555 A ASP 29 A ASP 29 21 1_555 A ASP 30 A ASP 30 21 1_555 A VAL 32 A VAL 32 21 1_555 A GLY 48 A GLY 48 21 1_555 A GLY 49 A GLY 49 21 1_555 A ILE 50 A ILE 50 21 1_555 A VAL 82 A VAL 82 21 1_555 A HOH 304 D HOH 21 1_555 A HOH 405 D HOH 21 1_555 B ARG 8 B ARG 8 21 1_555 B ASP 25 B ASP 25 21 1_555 B GLY 27 B GLY 27 21 1_555 B ASP 29 B ASP 29 21 1_555 B ASP 30 B ASP 30 21 1_555 B VAL 32 B VAL 32 21 1_555 B GLY 49 B GLY 49 21 1_555 B PRO 81 B PRO 81 21 1_555 B ILE 84 B ILE 84 21 1_555 19 P 21 21 21