0.017164
0.000000
0.000000
0.000000
0.011434
0.000000
0.000000
0.000000
0.021547
0.00000
0.00000
0.00000
Smith III, A.B.
Hirschmann, R.
Pasternak, A.
Yao, W.
Sprengeler, P.A.
Holloway, M.K.
Kuo, L.C.
Chen, Z.
Darke, P.L.
Schleif, W.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90
90
90
58.26
87.46
46.41
C36 H43 N3 O7
629.743
(3S)-TETRAHYDROFURAN-3-YL (1R,2S)-3-[4-((1R)-2-{[(S)-AMINO(HYDROXY)METHYL]OXY}-2,3-DIHYDRO-1H-INDEN-1-YL)-2-BENZYL-3-OXOPYRROLIDIN-2-YL]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
S
C
N
3
N
O
N
4
R
C
N
5
N
C
Y
6
N
C
Y
7
N
C
Y
8
N
C
Y
9
N
C
Y
10
N
C
Y
11
N
C
N
12
S
C
N
13
R
C
N
14
N
C
N
15
N
O
N
16
S
C
N
17
N
N
N
18
N
C
N
19
N
C
Y
20
N
C
Y
21
N
C
Y
22
N
C
Y
23
N
C
Y
24
N
C
Y
25
N
C
N
26
N
C
N
27
S
C
N
28
N
O
N
29
S
C
N
30
N
N
N
31
N
C
N
32
N
O
N
33
N
O
N
34
S
C
N
35
N
C
N
36
N
O
N
37
N
C
N
38
N
C
N
39
N
C
Y
40
N
C
Y
41
N
C
Y
42
N
C
Y
43
N
C
Y
44
N
C
Y
45
N
C
N
46
N
N
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
N
N
91
S
C
N
92
N
C
N
93
N
O
N
94
N
C
N
95
N
O
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
N
N
104
S
C
N
105
N
C
N
106
N
O
N
107
N
C
N
108
N
C
N
109
N
C
N
110
N
N
N
111
N
C
N
112
N
N
N
113
N
N
N
114
N
O
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
N
N
131
S
C
N
132
N
C
N
133
N
O
N
134
N
C
N
135
N
C
N
136
N
O
N
137
N
N
N
138
N
O
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
N
C
N
152
N
C
N
153
N
O
N
154
N
O
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
N
N
164
R
C
N
165
N
C
N
166
N
O
N
167
N
C
N
168
N
S
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
N
N
178
S
C
N
179
N
C
N
180
N
O
N
181
N
C
N
182
N
C
N
183
N
C
N
184
N
O
N
185
N
N
N
186
N
O
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
N
N
198
S
C
N
199
N
C
N
200
N
O
N
201
N
C
N
202
N
C
N
203
N
C
N
204
N
O
N
205
N
O
N
206
N
O
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
N
C
N
218
N
C
N
219
N
O
N
220
N
O
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
N
N
227
S
C
N
228
N
C
N
229
N
O
N
230
N
C
Y
231
N
C
Y
232
N
N
Y
233
N
C
Y
234
N
C
Y
235
N
N
N
236
N
O
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
S
C
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
N
N
273
S
C
N
274
N
C
N
275
N
O
N
276
N
C
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
N
N
295
S
C
N
296
N
C
N
297
N
O
N
298
N
C
N
299
N
C
N
300
N
C
N
301
N
C
N
302
N
N
N
303
N
O
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
N
N
320
S
C
N
321
N
C
N
322
N
O
N
323
N
C
N
324
N
C
N
325
N
S
N
326
N
C
N
327
N
O
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
N
C
Y
344
N
C
Y
345
N
C
Y
346
N
C
Y
347
N
C
Y
348
N
C
Y
349
N
C
N
350
N
O
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
N
N
363
S
C
N
364
N
C
N
365
N
O
N
366
N
C
N
367
N
C
N
368
N
C
N
369
N
O
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
N
N
380
S
C
N
381
N
C
N
382
N
O
N
383
N
C
N
384
N
O
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
R
C
N
398
N
O
N
399
N
C
N
400
N
O
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
N
N
411
S
C
N
412
N
C
N
413
N
O
N
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
N
Y
419
N
C
Y
420
N
C
Y
421
N
C
Y
422
N
C
Y
423
N
C
N
424
N
O
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
N
N
438
S
C
N
439
N
C
N
440
N
O
N
441
N
C
Y
442
N
C
Y
443
N
C
Y
444
N
C
Y
445
N
C
Y
446
N
C
Y
447
N
C
N
448
N
O
N
449
N
O
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
N
N
462
S
C
N
463
N
C
N
464
N
O
N
465
N
C
N
466
N
C
N
467
N
C
N
468
N
O
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
Y
13
N
doub
Y
14
N
sing
Y
15
N
sing
N
16
N
sing
Y
17
N
doub
N
18
N
sing
Y
19
N
sing
N
20
N
sing
Y
21
N
doub
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
doub
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
Y
41
N
doub
Y
42
N
sing
Y
43
N
sing
N
44
N
sing
Y
45
N
doub
N
46
N
sing
Y
47
N
sing
N
48
N
sing
Y
49
N
doub
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
Y
82
N
doub
Y
83
N
sing
Y
84
N
sing
N
85
N
sing
Y
86
N
doub
N
87
N
sing
Y
88
N
sing
N
89
N
sing
Y
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
doub
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
doub
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
Y
234
N
sing
Y
235
N
doub
Y
236
N
doub
N
237
N
sing
Y
238
N
sing
N
239
N
sing
Y
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
doub
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
doub
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
Y
342
N
doub
Y
343
N
sing
Y
344
N
sing
N
345
N
sing
Y
346
N
doub
N
347
N
sing
Y
348
N
doub
N
349
N
sing
Y
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
doub
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
Y
411
N
doub
Y
412
N
sing
Y
413
N
sing
N
414
N
sing
Y
415
N
doub
Y
416
N
sing
Y
417
N
sing
N
418
N
sing
Y
419
N
sing
Y
420
N
doub
N
421
N
sing
Y
422
N
doub
N
423
N
sing
Y
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
doub
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
Y
439
N
doub
Y
440
N
sing
Y
441
N
sing
N
442
N
sing
Y
443
N
doub
N
444
N
sing
Y
445
N
doub
N
446
N
sing
Y
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
doub
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
US
J.MED.CHEM.
JMCMAR
0151
0022-2623
40
2440
2444
10.1021/jm970195u
9258349
An orally bioavailable pyrrolinone inhibitor of HIV-1 protease: computational analysis and X-ray crystal structure of the enzyme complex.
1997
10.2210/pdb1npa/pdb
pdb_00001npa
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
293
1
IMAGE PLATE
1995-01-01
RIGAKU RAXIS II
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
10803.756
POL polyprotein
3.4.23.16
protease, residue 69-167
2
man
polymer
629.743
(3S)-TETRAHYDROFURAN-3-YL (1R,2S)-3-[4-((1R)-2-{[(S)-AMINO(HYDROXY)METHYL]OXY}-2,3-DIHYDRO-1H-INDEN-1-YL)-2-BENZYL-3-OXOPYRROLIDIN-2-YL]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE
1
syn
non-polymer
18.015
water
124
nat
water
Retropepsin
no
no
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGCTLNF
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGCTLNF
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lentivirus
Escherichia
sample
POL
11676
Human immunodeficiency virus 1
562
Escherichia coli
1
2.73
55.02
VAPOR DIFFUSION, HANGING DROP
5.4
0.1 M NaAc, 0.5 M NaCl, 1mM DTT, 3mM NaN3, pH 5.4, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
software
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
1
0
2004-01-27
1
1
2008-04-29
1
2
2011-07-13
1
3
2017-10-11
1
4
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2003-01-17
REL
3NH
(3S)-TETRAHYDROFURAN-3-YL (1R,2S)-3-[4-((1R)-2-{[(S)-AMINO(HYDROXY)METHYL]OXY}-2,3-DIHYDRO-1H-INDEN-1-YL)-2-BENZYL-3-OXOPYRROLIDIN-2-YL]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE
HOH
water
INH
1
2
3NH
3NH
100
A
WAT
304
3
HOH
HOH
304
A
WAT
305
3
HOH
HOH
305
A
WAT
309
3
HOH
HOH
309
A
WAT
311
3
HOH
HOH
311
A
WAT
312
3
HOH
HOH
312
A
WAT
313
3
HOH
HOH
313
A
WAT
319
3
HOH
HOH
319
A
WAT
320
3
HOH
HOH
320
A
WAT
321
3
HOH
HOH
321
A
WAT
322
3
HOH
HOH
322
A
WAT
325
3
HOH
HOH
325
A
WAT
327
3
HOH
HOH
327
A
WAT
328
3
HOH
HOH
328
A
WAT
330
3
HOH
HOH
330
A
WAT
331
3
HOH
HOH
331
A
WAT
333
3
HOH
HOH
333
A
WAT
337
3
HOH
HOH
337
A
WAT
338
3
HOH
HOH
338
A
WAT
344
3
HOH
HOH
344
A
WAT
345
3
HOH
HOH
345
A
WAT
350
3
HOH
HOH
350
A
WAT
366
3
HOH
HOH
366
A
WAT
367
3
HOH
HOH
367
A
WAT
368
3
HOH
HOH
368
A
WAT
369
3
HOH
HOH
369
A
WAT
370
3
HOH
HOH
370
A
WAT
371
3
HOH
HOH
371
A
WAT
375
3
HOH
HOH
375
A
WAT
376
3
HOH
HOH
376
A
WAT
377
3
HOH
HOH
377
A
WAT
378
3
HOH
HOH
378
A
WAT
380
3
HOH
HOH
380
A
WAT
382
3
HOH
HOH
382
A
WAT
383
3
HOH
HOH
383
A
WAT
384
3
HOH
HOH
384
A
WAT
385
3
HOH
HOH
385
A
WAT
389
3
HOH
HOH
389
A
WAT
390
3
HOH
HOH
390
A
WAT
391
3
HOH
HOH
391
A
WAT
393
3
HOH
HOH
393
A
WAT
397
3
HOH
HOH
397
A
WAT
399
3
HOH
HOH
399
A
WAT
401
3
HOH
HOH
401
A
WAT
403
3
HOH
HOH
403
A
WAT
404
3
HOH
HOH
404
A
WAT
405
3
HOH
HOH
405
A
WAT
406
3
HOH
HOH
406
A
WAT
407
3
HOH
HOH
407
A
WAT
410
3
HOH
HOH
410
A
WAT
411
3
HOH
HOH
411
A
WAT
412
3
HOH
HOH
412
A
WAT
413
3
HOH
HOH
413
A
WAT
414
3
HOH
HOH
414
A
WAT
416
3
HOH
HOH
416
A
WAT
417
3
HOH
HOH
417
A
WAT
422
3
HOH
HOH
422
A
WAT
425
3
HOH
HOH
425
A
WAT
302
3
HOH
HOH
302
B
WAT
303
3
HOH
HOH
303
B
WAT
306
3
HOH
HOH
306
B
WAT
307
3
HOH
HOH
307
B
WAT
308
3
HOH
HOH
308
B
WAT
310
3
HOH
HOH
310
B
WAT
314
3
HOH
HOH
314
B
WAT
315
3
HOH
HOH
315
B
WAT
316
3
HOH
HOH
316
B
WAT
317
3
HOH
HOH
317
B
WAT
318
3
HOH
HOH
318
B
WAT
323
3
HOH
HOH
323
B
WAT
324
3
HOH
HOH
324
B
WAT
326
3
HOH
HOH
326
B
WAT
329
3
HOH
HOH
329
B
WAT
332
3
HOH
HOH
332
B
WAT
334
3
HOH
HOH
334
B
WAT
335
3
HOH
HOH
335
B
WAT
336
3
HOH
HOH
336
B
WAT
339
3
HOH
HOH
339
B
WAT
340
3
HOH
HOH
340
B
WAT
341
3
HOH
HOH
341
B
WAT
342
3
HOH
HOH
342
B
WAT
343
3
HOH
HOH
343
B
WAT
346
3
HOH
HOH
346
B
WAT
347
3
HOH
HOH
347
B
WAT
348
3
HOH
HOH
348
B
WAT
349
3
HOH
HOH
349
B
WAT
351
3
HOH
HOH
351
B
WAT
352
3
HOH
HOH
352
B
WAT
353
3
HOH
HOH
353
B
WAT
354
3
HOH
HOH
354
B
WAT
355
3
HOH
HOH
355
B
WAT
356
3
HOH
HOH
356
B
WAT
357
3
HOH
HOH
357
B
WAT
358
3
HOH
HOH
358
B
WAT
359
3
HOH
HOH
359
B
WAT
360
3
HOH
HOH
360
B
WAT
361
3
HOH
HOH
361
B
WAT
362
3
HOH
HOH
362
B
WAT
363
3
HOH
HOH
363
B
WAT
364
3
HOH
HOH
364
B
WAT
365
3
HOH
HOH
365
B
WAT
372
3
HOH
HOH
372
B
WAT
373
3
HOH
HOH
373
B
WAT
374
3
HOH
HOH
374
B
WAT
379
3
HOH
HOH
379
B
WAT
381
3
HOH
HOH
381
B
WAT
386
3
HOH
HOH
386
B
WAT
387
3
HOH
HOH
387
B
WAT
388
3
HOH
HOH
388
B
WAT
392
3
HOH
HOH
392
B
WAT
394
3
HOH
HOH
394
B
WAT
395
3
HOH
HOH
395
B
WAT
396
3
HOH
HOH
396
B
WAT
398
3
HOH
HOH
398
B
WAT
400
3
HOH
HOH
400
B
WAT
402
3
HOH
HOH
402
B
WAT
408
3
HOH
HOH
408
B
WAT
409
3
HOH
HOH
409
B
WAT
415
3
HOH
HOH
415
B
WAT
418
3
HOH
HOH
418
B
WAT
419
3
HOH
HOH
419
B
WAT
420
3
HOH
HOH
420
B
WAT
421
3
HOH
HOH
421
B
WAT
423
3
HOH
HOH
423
B
WAT
424
3
HOH
HOH
424
B
PRO
1
n
1
PRO
1
A
GLN
2
n
2
GLN
2
A
ILE
3
n
3
ILE
3
A
THR
4
n
4
THR
4
A
LEU
5
n
5
LEU
5
A
TRP
6
n
6
TRP
6
A
GLN
7
n
7
GLN
7
A
ARG
8
n
8
ARG
8
A
PRO
9
n
9
PRO
9
A
LEU
10
n
10
LEU
10
A
VAL
11
n
11
VAL
11
A
THR
12
n
12
THR
12
A
ILE
13
n
13
ILE
13
A
LYS
14
n
14
LYS
14
A
ILE
15
n
15
ILE
15
A
GLY
16
n
16
GLY
16
A
GLY
17
n
17
GLY
17
A
GLN
18
n
18
GLN
18
A
LEU
19
n
19
LEU
19
A
LYS
20
n
20
LYS
20
A
GLU
21
n
21
GLU
21
A
ALA
22
n
22
ALA
22
A
LEU
23
n
23
LEU
23
A
LEU
24
n
24
LEU
24
A
ASP
25
n
25
ASP
25
A
THR
26
n
26
THR
26
A
GLY
27
n
27
GLY
27
A
ALA
28
n
28
ALA
28
A
ASP
29
n
29
ASP
29
A
ASP
30
n
30
ASP
30
A
THR
31
n
31
THR
31
A
VAL
32
n
32
VAL
32
A
LEU
33
n
33
LEU
33
A
GLU
34
n
34
GLU
34
A
GLU
35
n
35
GLU
35
A
MET
36
n
36
MET
36
A
SER
37
n
37
SER
37
A
LEU
38
n
38
LEU
38
A
PRO
39
n
39
PRO
39
A
GLY
40
n
40
GLY
40
A
ARG
41
n
41
ARG
41
A
TRP
42
n
42
TRP
42
A
LYS
43
n
43
LYS
43
A
PRO
44
n
44
PRO
44
A
LYS
45
n
45
LYS
45
A
MET
46
n
46
MET
46
A
ILE
47
n
47
ILE
47
A
GLY
48
n
48
GLY
48
A
GLY
49
n
49
GLY
49
A
ILE
50
n
50
ILE
50
A
GLY
51
n
51
GLY
51
A
GLY
52
n
52
GLY
52
A
PHE
53
n
53
PHE
53
A
ILE
54
n
54
ILE
54
A
LYS
55
n
55
LYS
55
A
VAL
56
n
56
VAL
56
A
ARG
57
n
57
ARG
57
A
GLN
58
n
58
GLN
58
A
TYR
59
n
59
TYR
59
A
ASP
60
n
60
ASP
60
A
GLN
61
n
61
GLN
61
A
ILE
62
n
62
ILE
62
A
LEU
63
n
63
LEU
63
A
ILE
64
n
64
ILE
64
A
GLU
65
n
65
GLU
65
A
ILE
66
n
66
ILE
66
A
CYS
67
n
67
CYS
67
A
GLY
68
n
68
GLY
68
A
HIS
69
n
69
HIS
69
A
LYS
70
n
70
LYS
70
A
ALA
71
n
71
ALA
71
A
ILE
72
n
72
ILE
72
A
GLY
73
n
73
GLY
73
A
THR
74
n
74
THR
74
A
VAL
75
n
75
VAL
75
A
LEU
76
n
76
LEU
76
A
VAL
77
n
77
VAL
77
A
GLY
78
n
78
GLY
78
A
PRO
79
n
79
PRO
79
A
THR
80
n
80
THR
80
A
PRO
81
n
81
PRO
81
A
VAL
82
n
82
VAL
82
A
ASN
83
n
83
ASN
83
A
ILE
84
n
84
ILE
84
A
ILE
85
n
85
ILE
85
A
GLY
86
n
86
GLY
86
A
ARG
87
n
87
ARG
87
A
ASN
88
n
88
ASN
88
A
LEU
89
n
89
LEU
89
A
LEU
90
n
90
LEU
90
A
THR
91
n
91
THR
91
A
GLN
92
n
92
GLN
92
A
ILE
93
n
93
ILE
93
A
GLY
94
n
94
GLY
94
A
CYS
95
n
95
CYS
95
A
THR
96
n
96
THR
96
A
LEU
97
n
97
LEU
97
A
ASN
98
n
98
ASN
98
A
PHE
99
n
99
PHE
99
A
PRO
201
n
1
PRO
1
B
GLN
202
n
2
GLN
2
B
ILE
203
n
3
ILE
3
B
THR
204
n
4
THR
4
B
LEU
205
n
5
LEU
5
B
TRP
206
n
6
TRP
6
B
GLN
207
n
7
GLN
7
B
ARG
208
n
8
ARG
8
B
PRO
209
n
9
PRO
9
B
LEU
210
n
10
LEU
10
B
VAL
211
n
11
VAL
11
B
THR
212
n
12
THR
12
B
ILE
213
n
13
ILE
13
B
LYS
214
n
14
LYS
14
B
ILE
215
n
15
ILE
15
B
GLY
216
n
16
GLY
16
B
GLY
217
n
17
GLY
17
B
GLN
218
n
18
GLN
18
B
LEU
219
n
19
LEU
19
B
LYS
220
n
20
LYS
20
B
GLU
221
n
21
GLU
21
B
ALA
222
n
22
ALA
22
B
LEU
223
n
23
LEU
23
B
LEU
224
n
24
LEU
24
B
ASP
225
n
25
ASP
25
B
THR
226
n
26
THR
26
B
GLY
227
n
27
GLY
27
B
ALA
228
n
28
ALA
28
B
ASP
229
n
29
ASP
29
B
ASP
230
n
30
ASP
30
B
THR
231
n
31
THR
31
B
VAL
232
n
32
VAL
32
B
LEU
233
n
33
LEU
33
B
GLU
234
n
34
GLU
34
B
GLU
235
n
35
GLU
35
B
MET
236
n
36
MET
36
B
SER
237
n
37
SER
37
B
LEU
238
n
38
LEU
38
B
PRO
239
n
39
PRO
39
B
GLY
240
n
40
GLY
40
B
ARG
241
n
41
ARG
41
B
TRP
242
n
42
TRP
42
B
LYS
243
n
43
LYS
43
B
PRO
244
n
44
PRO
44
B
LYS
245
n
45
LYS
45
B
MET
246
n
46
MET
46
B
ILE
247
n
47
ILE
47
B
GLY
248
n
48
GLY
48
B
GLY
249
n
49
GLY
49
B
ILE
250
n
50
ILE
50
B
GLY
251
n
51
GLY
51
B
GLY
252
n
52
GLY
52
B
PHE
253
n
53
PHE
53
B
ILE
254
n
54
ILE
54
B
LYS
255
n
55
LYS
55
B
VAL
256
n
56
VAL
56
B
ARG
257
n
57
ARG
57
B
GLN
258
n
58
GLN
58
B
TYR
259
n
59
TYR
59
B
ASP
260
n
60
ASP
60
B
GLN
261
n
61
GLN
61
B
ILE
262
n
62
ILE
62
B
LEU
263
n
63
LEU
63
B
ILE
264
n
64
ILE
64
B
GLU
265
n
65
GLU
65
B
ILE
266
n
66
ILE
66
B
CYS
267
n
67
CYS
67
B
GLY
268
n
68
GLY
68
B
HIS
269
n
69
HIS
69
B
LYS
270
n
70
LYS
70
B
ALA
271
n
71
ALA
71
B
ILE
272
n
72
ILE
72
B
GLY
273
n
73
GLY
73
B
THR
274
n
74
THR
74
B
VAL
275
n
75
VAL
75
B
LEU
276
n
76
LEU
76
B
VAL
277
n
77
VAL
77
B
GLY
278
n
78
GLY
78
B
PRO
279
n
79
PRO
79
B
THR
280
n
80
THR
80
B
PRO
281
n
81
PRO
81
B
VAL
282
n
82
VAL
82
B
ASN
283
n
83
ASN
83
B
ILE
284
n
84
ILE
84
B
ILE
285
n
85
ILE
85
B
GLY
286
n
86
GLY
86
B
ARG
287
n
87
ARG
87
B
ASN
288
n
88
ASN
88
B
LEU
289
n
89
LEU
89
B
LEU
290
n
90
LEU
90
B
THR
291
n
91
THR
91
B
GLN
292
n
92
GLN
92
B
ILE
293
n
93
ILE
93
B
GLY
294
n
94
GLY
94
B
CYS
295
n
95
CYS
95
B
THR
296
n
96
THR
96
B
LEU
297
n
97
LEU
97
B
ASN
298
n
98
ASN
98
B
PHE
299
n
99
PHE
99
B
author_and_software_defined_assembly
PISA
2
dimeric
4960
-32
9260
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
3
A
N
ILE
3
B
O
LEU
97
B
O
LEU
97
B
O
ASN
98
B
O
ASN
98
A
N
THR
96
A
N
THR
96
A
O
LEU
97
A
O
LEU
97
B
N
ILE
3
B
N
ILE
3
A
N
ILE
15
A
N
ILE
15
A
O
GLN
18
A
O
GLN
18
A
N
LEU
23
A
N
LEU
23
A
O
ASN
83
A
O
ASN
83
A
N
ILE
84
A
N
ILE
84
A
O
VAL
32
A
O
VAL
32
A
N
LEU
33
A
N
LEU
33
A
O
LEU
76
A
O
LEU
76
A
O
VAL
77
A
O
VAL
77
A
N
ARG
57
A
N
ARG
57
A
N
GLN
58
A
N
GLN
58
A
O
LYS
43
A
O
LYS
43
A
N
GLY
49
A
N
GLY
49
A
O
GLY
52
A
O
GLY
52
A
N
GLU
65
A
N
GLU
65
A
O
LYS
14
A
O
LYS
14
B
N
ILE
15
B
N
ILE
15
B
O
GLN
18
B
O
GLN
18
B
O
LEU
23
B
O
LEU
23
B
N
ILE
85
B
N
ILE
85
B
N
ILE
84
B
N
ILE
84
B
O
VAL
32
B
O
VAL
32
B
N
LEU
33
B
N
LEU
33
B
O
LEU
76
B
O
LEU
76
B
O
VAL
77
B
O
VAL
77
B
N
ARG
57
B
N
ARG
57
B
N
GLN
58
B
N
GLN
58
B
O
LYS
43
B
O
LYS
43
B
N
GLY
49
B
N
GLY
49
B
O
GLY
52
B
O
GLY
52
B
O
GLU
65
B
O
GLU
65
B
N
LYS
14
B
N
LYS
14
1
A
C1
3NH
100
PLANAR
1
A
C35
3NH
100
PLANAR
1
A
C44
3NH
100
PLANAR
1
A
A
CA
O
ILE
HOH
62
367
1.73
1
A
A
O
O
GLN
HOH
61
367
2.10
1
-10.35
1.40
111.50
101.15
A
A
A
CA
N
CD
PRO
PRO
PRO
1
1
1
N
1
-10.84
1.40
111.50
100.66
B
B
B
CA
N
CD
PRO
PRO
PRO
1
1
1
N
1
-4.04
0.50
120.30
116.26
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
41
41
41
N
1
A
B
CB
OE1
GLN
GLN
61
2
1.05
1_555
2_565
1
A
B
CD
NE2
GLN
GLN
61
2
1.11
1_555
2_565
1
A
B
OE1
NE2
GLN
GLN
61
2
1.30
1_555
2_565
1
A
B
NZ
CB
LYS
GLN
70
7
1.44
1_555
2_565
1
A
B
CB
CD
GLN
GLN
61
2
1.46
1_555
2_565
1
A
B
CG
NE2
GLN
GLN
61
2
1.50
1_555
2_565
1
A
A
NE2
ND2
GLN
ASN
61
98
1.65
1_555
2_565
1
A
B
NZ
CG
LYS
GLN
70
7
1.65
1_555
2_565
1
A
B
CA
OE1
GLN
GLN
61
2
1.73
1_555
2_565
1
A
B
CG
CD
GLN
GLN
61
2
1.74
1_555
2_565
1
A
B
CB
NE2
GLN
GLN
61
2
1.78
1_555
2_565
1
A
B
CD
CD
GLN
GLN
61
2
1.94
1_555
2_565
1
A
B
CG
OE1
GLN
GLN
61
2
2.16
1_555
2_565
1
A
GLU
35
-39.29
117.07
0.183
0.183
0.183
2
6
12556
11799
1
3
FOURIER SYNTHESIS
2
6
124
2014
46
0
1844
2
15
1NPA
15398
12556
3.0
0.623
1
81.5
model building
X-PLOR
refinement
X-PLOR
3.1
phasing
X-PLOR
crystal structure of HIV-1 protease-hup
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
A
GLY
86
A
GLY
86
HELX_P
A
THR
91
A
THR
91
1
1
6
A
GLN
92
A
GLN
92
HELX_P
A
GLY
94
A
GLY
94
5
2
3
B
GLY
86
B
GLY
86
HELX_P
B
THR
91
B
THR
91
1
3
6
HYDROLASE
protease, HIV, Aspartyl protease, hydrolase
POL_HV1PV
UNP
1
69
P03368
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGCTLNF
69
167
1NPA
1
99
P03368
A
1
1
99
69
167
1NPA
1
99
P03368
B
1
1
99
4
9
9
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLN
2
A
GLN
2
A
THR
4
A
THR
4
B
THR
96
B
THR
96
B
ASN
98
B
ASN
98
A
THR
96
A
THR
96
A
ASN
98
A
ASN
98
B
GLN
2
B
GLN
2
B
THR
4
B
THR
4
A
LEU
10
A
LEU
10
A
ILE
15
A
ILE
15
A
GLN
18
A
GLN
18
A
LEU
24
A
LEU
24
A
ASN
83
A
ASN
83
A
ILE
85
A
ILE
85
A
VAL
32
A
VAL
32
A
LEU
33
A
LEU
33
A
HIS
69
A
HIS
69
A
VAL
77
A
VAL
77
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
A
LYS
43
A
LYS
43
A
GLY
49
A
GLY
49
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
A
LEU
10
A
LEU
10
A
ILE
15
A
ILE
15
B
LEU
10
B
LEU
10
B
ILE
15
B
ILE
15
B
GLN
18
B
GLN
18
B
LEU
24
B
LEU
24
B
ILE
84
B
ILE
84
B
ILE
85
B
ILE
85
B
VAL
32
B
VAL
32
B
LEU
33
B
LEU
33
B
HIS
69
B
HIS
69
B
VAL
77
B
VAL
77
B
GLY
52
B
GLY
52
B
ILE
66
B
ILE
66
B
LYS
43
B
LYS
43
B
GLY
49
B
GLY
49
B
GLY
52
B
GLY
52
B
ILE
66
B
ILE
66
B
LEU
10
B
LEU
10
B
ILE
15
B
ILE
15
BINDING SITE FOR RESIDUE 3NH A 100
A
3NH
100
Software
21
A
ASP
25
A
ASP
25
21
1_555
A
GLY
27
A
GLY
27
21
1_555
A
ALA
28
A
ALA
28
21
1_555
A
ASP
29
A
ASP
29
21
1_555
A
ASP
30
A
ASP
30
21
1_555
A
VAL
32
A
VAL
32
21
1_555
A
GLY
48
A
GLY
48
21
1_555
A
GLY
49
A
GLY
49
21
1_555
A
ILE
50
A
ILE
50
21
1_555
A
VAL
82
A
VAL
82
21
1_555
A
HOH
304
D
HOH
21
1_555
A
HOH
405
D
HOH
21
1_555
B
ARG
8
B
ARG
8
21
1_555
B
ASP
25
B
ASP
25
21
1_555
B
GLY
27
B
GLY
27
21
1_555
B
ASP
29
B
ASP
29
21
1_555
B
ASP
30
B
ASP
30
21
1_555
B
VAL
32
B
VAL
32
21
1_555
B
GLY
49
B
GLY
49
21
1_555
B
PRO
81
B
PRO
81
21
1_555
B
ILE
84
B
ILE
84
21
1_555
19
P 21 21 21