0.013477
0.007781
0.000000
0.000000
0.015562
0.000000
0.000000
0.000000
0.009511
0.00000
0.00000
0.00000
Janin, J.
Morera, S.
Lebras, G.
Lascu, I.
Veron, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
74.200
74.200
105.140
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
O
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
R
C
N
295
N
O
N
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
N
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
N
345
N
O
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
N
363
N
C
N
364
N
C
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
Y
309
N
sing
Y
310
N
sing
N
311
N
sing
Y
312
N
sing
Y
313
N
doub
N
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
Y
332
N
doub
Y
333
N
sing
Y
334
N
sing
N
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
doub
N
339
N
sing
Y
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
243
873
890
10.1006/jmbi.1994.1689
7966307
Refined X-ray structure of Dictyostelium discoideum nucleoside diphosphate kinase at 1.8 A resolution.
1994
10.2210/pdb1npk/pdb
pdb_00001npk
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
16685.139
NUCLEOSIDE DIPHOSPHATE KINASE
2.7.4.6
1
man
polymer
18.015
water
95
nat
water
no
no
STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMV
FEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVESANREIALWFKPEELLTEVKPNPNLYE
STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMV
FEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVESANREIALWFKPEELLTEVKPNPNLYE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Dictyostelium
sample
44689
Dictyostelium discoideum
2.50
50.85
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Database references
Other
1
0
1994-11-01
1
1
2008-03-24
1
2
2011-07-13
1
3
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
Y
BNL
1994-07-27
REL
HOH
water
HOH
200
2
HOH
HOH
200
A
HOH
201
2
HOH
HOH
201
A
HOH
202
2
HOH
HOH
202
A
HOH
203
2
HOH
HOH
203
A
HOH
204
2
HOH
HOH
204
A
HOH
205
2
HOH
HOH
205
A
HOH
206
2
HOH
HOH
206
A
HOH
207
2
HOH
HOH
207
A
HOH
208
2
HOH
HOH
208
A
HOH
209
2
HOH
HOH
209
A
HOH
210
2
HOH
HOH
210
A
HOH
211
2
HOH
HOH
211
A
HOH
212
2
HOH
HOH
212
A
HOH
213
2
HOH
HOH
213
A
HOH
214
2
HOH
HOH
214
A
HOH
215
2
HOH
HOH
215
A
HOH
216
2
HOH
HOH
216
A
HOH
217
2
HOH
HOH
217
A
HOH
218
2
HOH
HOH
218
A
HOH
219
2
HOH
HOH
219
A
HOH
220
2
HOH
HOH
220
A
HOH
221
2
HOH
HOH
221
A
HOH
222
2
HOH
HOH
222
A
HOH
223
2
HOH
HOH
223
A
HOH
224
2
HOH
HOH
224
A
HOH
225
2
HOH
HOH
225
A
HOH
226
2
HOH
HOH
226
A
HOH
227
2
HOH
HOH
227
A
HOH
228
2
HOH
HOH
228
A
HOH
229
2
HOH
HOH
229
A
HOH
230
2
HOH
HOH
230
A
HOH
231
2
HOH
HOH
231
A
HOH
232
2
HOH
HOH
232
A
HOH
233
2
HOH
HOH
233
A
HOH
234
2
HOH
HOH
234
A
HOH
235
2
HOH
HOH
235
A
HOH
236
2
HOH
HOH
236
A
HOH
237
2
HOH
HOH
237
A
HOH
238
2
HOH
HOH
238
A
HOH
239
2
HOH
HOH
239
A
HOH
240
2
HOH
HOH
240
A
HOH
241
2
HOH
HOH
241
A
HOH
242
2
HOH
HOH
242
A
HOH
243
2
HOH
HOH
243
A
HOH
244
2
HOH
HOH
244
A
HOH
245
2
HOH
HOH
245
A
HOH
246
2
HOH
HOH
246
A
HOH
247
2
HOH
HOH
247
A
HOH
248
2
HOH
HOH
248
A
HOH
249
2
HOH
HOH
249
A
HOH
250
2
HOH
HOH
250
A
HOH
251
2
HOH
HOH
251
A
HOH
252
2
HOH
HOH
252
A
HOH
253
2
HOH
HOH
253
A
HOH
254
2
HOH
HOH
254
A
HOH
255
2
HOH
HOH
255
A
HOH
256
2
HOH
HOH
256
A
HOH
257
2
HOH
HOH
257
A
HOH
258
2
HOH
HOH
258
A
HOH
259
2
HOH
HOH
259
A
HOH
260
2
HOH
HOH
260
A
HOH
261
2
HOH
HOH
261
A
HOH
262
2
HOH
HOH
262
A
HOH
263
2
HOH
HOH
263
A
HOH
264
2
HOH
HOH
264
A
HOH
265
2
HOH
HOH
265
A
HOH
266
2
HOH
HOH
266
A
HOH
267
2
HOH
HOH
267
A
HOH
268
2
HOH
HOH
268
A
HOH
269
2
HOH
HOH
269
A
HOH
270
2
HOH
HOH
270
A
HOH
271
2
HOH
HOH
271
A
HOH
272
2
HOH
HOH
272
A
HOH
273
2
HOH
HOH
273
A
HOH
274
2
HOH
HOH
274
A
HOH
275
2
HOH
HOH
275
A
HOH
276
2
HOH
HOH
276
A
HOH
277
2
HOH
HOH
277
A
HOH
278
2
HOH
HOH
278
A
HOH
279
2
HOH
HOH
279
A
HOH
280
2
HOH
HOH
280
A
HOH
281
2
HOH
HOH
281
A
HOH
282
2
HOH
HOH
282
A
HOH
283
2
HOH
HOH
283
A
HOH
284
2
HOH
HOH
284
A
HOH
285
2
HOH
HOH
285
A
HOH
286
2
HOH
HOH
286
A
HOH
287
2
HOH
HOH
287
A
HOH
288
2
HOH
HOH
288
A
HOH
289
2
HOH
HOH
289
A
HOH
290
2
HOH
HOH
290
A
HOH
291
2
HOH
HOH
291
A
HOH
292
2
HOH
HOH
292
A
HOH
293
2
HOH
HOH
293
A
HOH
294
2
HOH
HOH
294
A
n
1
2
A
n
2
3
A
n
3
4
A
n
4
5
A
VAL
6
n
5
VAL
6
A
ASN
7
n
6
ASN
7
A
LYS
8
n
7
LYS
8
A
GLU
9
n
8
GLU
9
A
ARG
10
n
9
ARG
10
A
THR
11
n
10
THR
11
A
PHE
12
n
11
PHE
12
A
LEU
13
n
12
LEU
13
A
ALA
14
n
13
ALA
14
A
VAL
15
n
14
VAL
15
A
LYS
16
n
15
LYS
16
A
PRO
17
n
16
PRO
17
A
ASP
18
n
17
ASP
18
A
GLY
19
n
18
GLY
19
A
VAL
20
n
19
VAL
20
A
ALA
21
n
20
ALA
21
A
ARG
22
n
21
ARG
22
A
GLY
23
n
22
GLY
23
A
LEU
24
n
23
LEU
24
A
VAL
25
n
24
VAL
25
A
GLY
26
n
25
GLY
26
A
GLU
27
n
26
GLU
27
A
ILE
28
n
27
ILE
28
A
ILE
29
n
28
ILE
29
A
ALA
30
n
29
ALA
30
A
ARG
31
n
30
ARG
31
A
TYR
32
n
31
TYR
32
A
GLU
33
n
32
GLU
33
A
LYS
34
n
33
LYS
34
A
LYS
35
n
34
LYS
35
A
GLY
36
n
35
GLY
36
A
PHE
37
n
36
PHE
37
A
VAL
38
n
37
VAL
38
A
LEU
39
n
38
LEU
39
A
VAL
40
n
39
VAL
40
A
GLY
41
n
40
GLY
41
A
LEU
42
n
41
LEU
42
A
LYS
43
n
42
LYS
43
A
GLN
44
n
43
GLN
44
A
LEU
45
n
44
LEU
45
A
VAL
46
n
45
VAL
46
A
PRO
47
n
46
PRO
47
A
THR
48
n
47
THR
48
A
LYS
49
n
48
LYS
49
A
ASP
50
n
49
ASP
50
A
LEU
51
n
50
LEU
51
A
ALA
52
n
51
ALA
52
A
GLU
53
n
52
GLU
53
A
SER
54
n
53
SER
54
A
HIS
55
n
54
HIS
55
A
TYR
56
n
55
TYR
56
A
ALA
57
n
56
ALA
57
A
GLU
58
n
57
GLU
58
A
HIS
59
n
58
HIS
59
A
LYS
60
n
59
LYS
60
A
GLU
61
n
60
GLU
61
A
ARG
62
n
61
ARG
62
A
PRO
63
n
62
PRO
63
A
PHE
64
n
63
PHE
64
A
PHE
65
n
64
PHE
65
A
GLY
66
n
65
GLY
66
A
GLY
67
n
66
GLY
67
A
LEU
68
n
67
LEU
68
A
VAL
69
n
68
VAL
69
A
SER
70
n
69
SER
70
A
PHE
71
n
70
PHE
71
A
ILE
72
n
71
ILE
72
A
THR
73
n
72
THR
73
A
SER
74
n
73
SER
74
A
GLY
75
n
74
GLY
75
A
PRO
76
n
75
PRO
76
A
VAL
77
n
76
VAL
77
A
VAL
78
n
77
VAL
78
A
ALA
79
n
78
ALA
79
A
MET
80
n
79
MET
80
A
VAL
81
n
80
VAL
81
A
PHE
82
n
81
PHE
82
A
GLU
83
n
82
GLU
83
A
GLY
84
n
83
GLY
84
A
LYS
85
n
84
LYS
85
A
GLY
86
n
85
GLY
86
A
VAL
87
n
86
VAL
87
A
VAL
88
n
87
VAL
88
A
ALA
89
n
88
ALA
89
A
SER
90
n
89
SER
90
A
ALA
91
n
90
ALA
91
A
ARG
92
n
91
ARG
92
A
LEU
93
n
92
LEU
93
A
MET
94
n
93
MET
94
A
ILE
95
n
94
ILE
95
A
GLY
96
n
95
GLY
96
A
VAL
97
n
96
VAL
97
A
THR
98
n
97
THR
98
A
ASN
99
n
98
ASN
99
A
PRO
100
n
99
PRO
100
A
LEU
101
n
100
LEU
101
A
ALA
102
n
101
ALA
102
A
SER
103
n
102
SER
103
A
ALA
104
n
103
ALA
104
A
PRO
105
n
104
PRO
105
A
GLY
106
n
105
GLY
106
A
SER
107
n
106
SER
107
A
ILE
108
n
107
ILE
108
A
ARG
109
n
108
ARG
109
A
GLY
110
n
109
GLY
110
A
ASP
111
n
110
ASP
111
A
PHE
112
n
111
PHE
112
A
GLY
113
n
112
GLY
113
A
VAL
114
n
113
VAL
114
A
ASP
115
n
114
ASP
115
A
VAL
116
n
115
VAL
116
A
GLY
117
n
116
GLY
117
A
ARG
118
n
117
ARG
118
A
ASN
119
n
118
ASN
119
A
ILE
120
n
119
ILE
120
A
ILE
121
n
120
ILE
121
A
HIS
122
n
121
HIS
122
A
GLY
123
n
122
GLY
123
A
SER
124
n
123
SER
124
A
ASP
125
n
124
ASP
125
A
SER
126
n
125
SER
126
A
VAL
127
n
126
VAL
127
A
GLU
128
n
127
GLU
128
A
SER
129
n
128
SER
129
A
ALA
130
n
129
ALA
130
A
ASN
131
n
130
ASN
131
A
ARG
132
n
131
ARG
132
A
GLU
133
n
132
GLU
133
A
ILE
134
n
133
ILE
134
A
ALA
135
n
134
ALA
135
A
LEU
136
n
135
LEU
136
A
TRP
137
n
136
TRP
137
A
PHE
138
n
137
PHE
138
A
LYS
139
n
138
LYS
139
A
PRO
140
n
139
PRO
140
A
GLU
141
n
140
GLU
141
A
GLU
142
n
141
GLU
142
A
LEU
143
n
142
LEU
143
A
LEU
144
n
143
LEU
144
A
THR
145
n
144
THR
145
A
GLU
146
n
145
GLU
146
A
VAL
147
n
146
VAL
147
A
LYS
148
n
147
LYS
148
A
PRO
149
n
148
PRO
149
A
ASN
150
n
149
ASN
150
A
PRO
151
n
150
PRO
151
A
ASN
152
n
151
ASN
152
A
LEU
153
n
152
LEU
153
A
TYR
154
n
153
TYR
154
A
GLU
155
n
154
GLU
155
A
author_and_software_defined_assembly
PISA,PQS
6
hexameric
12720
-62
35470
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_665
-y+1,x-y+1,z
crystal symmetry operation
37.1000000000
64.2590849608
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_565
-x+y,-x+1,z
crystal symmetry operation
-37.1000000000
64.2590849608
0.0000000000
0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
10_665
-y+1,-x+1,-z+1/2
crystal symmetry operation
37.1000000000
64.2590849608
52.5700000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
11_555
-x+y,y,-z+1/2
crystal symmetry operation
0.0000000000
0.0000000000
52.5700000000
0.5000000000
0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
12_565
x,x-y+1,-z+1/2
crystal symmetry operation
-37.1000000000
64.2590849608
52.5700000000
1
A
SER
2
A
SER
1
1
Y
1
A
THR
3
A
THR
2
1
Y
1
A
ASN
4
A
ASN
3
1
Y
1
A
LYS
5
A
LYS
4
1
Y
1
A
PHE
71
0.077
SIDE CHAIN
1
A
ARG
109
0.114
SIDE CHAIN
1
-3.96
0.50
120.30
116.34
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
109
109
109
N
1
A
ILE
120
80.59
-51.61
0.1960000
0.1960000
1.80
8.0
14333
1
2.0
1.80
8.0
95
1242
0
0
1147
0.013
1.28
model building
X-PLOR
refinement
X-PLOR
phasing
X-PLOR
REFINED X-RAY STRUCTURE OF DICTYOSTELIUM NUCLEOSIDE DIPHOSPHATE KINASE AT 1,8 ANGSTROMS RESOLUTION
1
N
N
2
N
N
A
PRO
17
A
PRO
16
HELX_P
A
ALA
21
A
ALA
20
1
A0
5
A
VAL
25
A
VAL
24
HELX_P
A
LYS
35
A
LYS
34
1
A1
11
A
LYS
49
A
LYS
48
HELX_P
A
HIS
55
A
HIS
54
1
AA
7
A
ALA
57
A
ALA
56
HELX_P
3/10 HELIX
A
HIS
59
A
HIS
58
5
310
3
A
PHE
65
A
PHE
64
HELX_P
A
THR
73
A
THR
72
1
A2
9
A
VAL
87
A
VAL
86
HELX_P
A
ILE
95
A
ILE
94
1
A3
9
A
PRO
100
A
PRO
99
HELX_P
3/10 HELIX
A
ALA
102
A
ALA
101
5
310
3
A
SER
103
A
SER
102
HELX_P
POLYPROLINE II
A
PRO
105
A
PRO
104
10
PP
3
A
ILE
108
A
ILE
107
HELX_P
A
PHE
112
A
PHE
111
1
A'3
5
A
VAL
127
A
VAL
126
HELX_P
A
TRP
137
A
TRP
136
1
A4
11
A
GLU
142
A
GLU
141
HELX_P
3/10 HELIX
A
GLU
142
A
GLU
141
5
310
1
A
GLU
146
A
GLU
145
HELX_P
POLYPROLINE II
A
ASN
150
A
ASN
149
10
PP
5
PHOSPHOTRANSFERASE(PO4 AS ACCEPTOR)
PHOSPHOTRANSFERASE(PO4 AS ACCEPTOR)
NDKC_DICDI
UNP
1
1
P22887
MSTNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAM
VFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVESANREIALWFKPEELLTEVKPNPNLYE
2
155
1NPK
2
155
P22887
A
1
1
154
4
parallel
parallel
parallel
A
GLU
9
A
GLU
8
A
LYS
16
A
LYS
15
A
VAL
38
A
VAL
37
A
LEU
45
A
LEU
44
A
VAL
77
A
VAL
76
A
GLU
83
A
GLU
82
A
ILE
121
A
ILE
120
A
SER
124
A
SER
123
182
P 63 2 2