0.041728 0.000000 0.000000 0.000000 0.019684 0.000000 0.000000 0.000000 0.013284 0.00000 0.00000 0.00000 Zhang, X. Schwartz, J.-C.D. Guo, X. Cao, E. Chen, L. Zhang, Z.-Y. Nathenson, S.G. Almo, S.C. 0000-0002-2487-9713 Burley, S.K. New York SGX Research Center for Structural Genomics (NYSGXRC) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 23.965 50.802 75.278 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing US Immunity IUNIEH 2048 1074-7613 20 337 347 10.1016/S1074-7613(04)00051-2 15030777 Structural and functional analysis of the costimulatory receptor programmed death-1. 2004 10.2210/pdb1npu/pdb pdb_00001npu 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2002-05-01 ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 0.9746 1.0 X9B NSLS 0.9746 SYNCHROTRON NSLS BEAMLINE X9B 13176.714 Programmed cell death protein 1 Ig V-type domain C50S 1 man polymer 18.015 water 73 nat water Protein PD-1, mPD-1 no no SLTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDT RRNDSGIYLCGAISLHPKAKIEESPGAELVVTERILE SLTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDT RRNDSGIYLCGAISLHPKAKIEESPGAELVVTERILE A NYSGXRC-T749 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus Escherichia Escherichia coli sample PDCD1 OR PD1 10090 Mus musculus 469008 Escherichia coli BL21(DE3) BL21(DE3) plasmid pET3a 1 1.67 25.8 VAPOR DIFFUSION, HANGING DROP 6.5 PEG8000, NaAc, NaCacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 New York SGX Research Center for Structural Genomics NYSGXRC PSI, Protein Structure Initiative audit_author database_2 struct_ref_seq_dif chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Structure summary Database references Data collection Refinement description 1 0 2004-03-23 1 1 2008-04-29 1 2 2011-07-13 1 3 2021-02-03 1 4 2021-10-27 1 5 2023-08-16 _audit_author.identifier_ORCID _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details Y RCSB Y RCSB 2003-01-20 REL REL HOH water 1B88 PDB ENTRY 1B88 PDB experimental model HOH 1 2 HOH HOH 118 A HOH 2 2 HOH HOH 119 A HOH 3 2 HOH HOH 120 A HOH 4 2 HOH HOH 121 A HOH 5 2 HOH HOH 122 A HOH 6 2 HOH HOH 123 A HOH 7 2 HOH HOH 124 A HOH 8 2 HOH HOH 125 A HOH 9 2 HOH HOH 126 A HOH 10 2 HOH HOH 127 A HOH 11 2 HOH HOH 128 A HOH 12 2 HOH HOH 129 A HOH 13 2 HOH HOH 130 A HOH 14 2 HOH HOH 131 A HOH 15 2 HOH HOH 132 A HOH 16 2 HOH HOH 133 A HOH 17 2 HOH HOH 134 A HOH 18 2 HOH HOH 135 A HOH 19 2 HOH HOH 136 A HOH 20 2 HOH HOH 137 A HOH 21 2 HOH HOH 138 A HOH 22 2 HOH HOH 139 A HOH 23 2 HOH HOH 140 A HOH 24 2 HOH HOH 141 A HOH 25 2 HOH HOH 142 A HOH 26 2 HOH HOH 143 A HOH 27 2 HOH HOH 144 A HOH 28 2 HOH HOH 145 A HOH 29 2 HOH HOH 146 A HOH 30 2 HOH HOH 147 A HOH 31 2 HOH HOH 148 A HOH 32 2 HOH HOH 149 A HOH 33 2 HOH HOH 150 A HOH 34 2 HOH HOH 151 A HOH 35 2 HOH HOH 152 A HOH 36 2 HOH HOH 153 A HOH 37 2 HOH HOH 154 A HOH 38 2 HOH HOH 155 A HOH 39 2 HOH HOH 156 A HOH 40 2 HOH HOH 157 A HOH 41 2 HOH HOH 158 A HOH 42 2 HOH HOH 159 A HOH 43 2 HOH HOH 160 A HOH 44 2 HOH HOH 161 A HOH 45 2 HOH HOH 162 A HOH 46 2 HOH HOH 163 A HOH 47 2 HOH HOH 164 A HOH 48 2 HOH HOH 165 A HOH 49 2 HOH HOH 166 A HOH 50 2 HOH HOH 167 A HOH 51 2 HOH HOH 168 A HOH 52 2 HOH HOH 169 A HOH 53 2 HOH HOH 170 A HOH 54 2 HOH HOH 171 A HOH 55 2 HOH HOH 172 A HOH 56 2 HOH HOH 173 A HOH 57 2 HOH HOH 174 A HOH 58 2 HOH HOH 175 A HOH 59 2 HOH HOH 176 A HOH 60 2 HOH HOH 177 A HOH 61 2 HOH HOH 178 A HOH 62 2 HOH HOH 179 A HOH 63 2 HOH HOH 180 A HOH 64 2 HOH HOH 181 A HOH 65 2 HOH HOH 182 A HOH 66 2 HOH HOH 183 A HOH 67 2 HOH HOH 184 A HOH 68 2 HOH HOH 185 A HOH 69 2 HOH HOH 186 A HOH 70 2 HOH HOH 187 A HOH 71 2 HOH HOH 188 A HOH 72 2 HOH HOH 189 A HOH 73 2 HOH HOH 190 A SER 1 n 1 SER 1 A LEU 2 n 2 LEU 2 A THR 3 n 3 THR 3 A PHE 4 n 4 PHE 4 A TYR 5 n 5 TYR 5 A PRO 6 n 6 PRO 6 A ALA 7 n 7 ALA 7 A TRP 8 n 8 TRP 8 A LEU 9 n 9 LEU 9 A THR 10 n 10 THR 10 A VAL 11 n 11 VAL 11 A SER 12 n 12 SER 12 A GLU 13 n 13 GLU 13 A GLY 14 n 14 GLY 14 A ALA 15 n 15 ALA 15 A ASN 16 n 16 ASN 16 A ALA 17 n 17 ALA 17 A THR 18 n 18 THR 18 A PHE 19 n 19 PHE 19 A THR 20 n 20 THR 20 A CYS 21 n 21 CYS 21 A SER 22 n 22 SER 22 A LEU 23 n 23 LEU 23 A SER 24 n 24 SER 24 A ASN 25 n 25 ASN 25 A TRP 26 n 26 TRP 26 A SER 27 n 27 SER 27 A GLU 28 n 28 GLU 28 A ASP 29 n 29 ASP 29 A LEU 30 n 30 LEU 30 A MET 31 n 31 MET 31 A LEU 32 n 32 LEU 32 A ASN 33 n 33 ASN 33 A TRP 34 n 34 TRP 34 A ASN 35 n 35 ASN 35 A ARG 36 n 36 ARG 36 A LEU 37 n 37 LEU 37 A SER 38 n 38 SER 38 A PRO 39 n 39 PRO 39 A SER 40 n 40 SER 40 A ASN 41 n 41 ASN 41 A GLN 42 n 42 GLN 42 A THR 43 n 43 THR 43 A GLU 44 n 44 GLU 44 A LYS 45 n 45 LYS 45 A GLN 46 n 46 GLN 46 A ALA 47 n 47 ALA 47 A ALA 48 n 48 ALA 48 A PHE 49 n 49 PHE 49 A SER 50 n 50 SER 50 A ASN 51 n 51 ASN 51 A GLY 52 n 52 GLY 52 A LEU 53 n 53 LEU 53 A SER 54 n 54 SER 54 A GLN 55 n 55 GLN 55 A PRO 56 n 56 PRO 56 A VAL 57 n 57 VAL 57 A GLN 58 n 58 GLN 58 A ASP 59 n 59 ASP 59 A ALA 60 n 60 ALA 60 A ARG 61 n 61 ARG 61 A PHE 62 n 62 PHE 62 A GLN 63 n 63 GLN 63 A ILE 64 n 64 ILE 64 A ILE 65 n 65 ILE 65 A GLN 66 n 66 GLN 66 A LEU 67 n 67 LEU 67 A PRO 68 n 68 PRO 68 A ASN 69 n 69 ASN 69 A ARG 70 n 70 ARG 70 A HIS 71 n 71 HIS 71 A ASP 72 n 72 ASP 72 A PHE 73 n 73 PHE 73 A HIS 74 n 74 HIS 74 A MET 75 n 75 MET 75 A ASN 76 n 76 ASN 76 A ILE 77 n 77 ILE 77 A LEU 78 n 78 LEU 78 A ASP 79 n 79 ASP 79 A THR 80 n 80 THR 80 A ARG 81 n 81 ARG 81 A ARG 82 n 82 ARG 82 A ASN 83 n 83 ASN 83 A ASP 84 n 84 ASP 84 A SER 85 n 85 SER 85 A GLY 86 n 86 GLY 86 A ILE 87 n 87 ILE 87 A TYR 88 n 88 TYR 88 A LEU 89 n 89 LEU 89 A CYS 90 n 90 CYS 90 A GLY 91 n 91 GLY 91 A ALA 92 n 92 ALA 92 A ILE 93 n 93 ILE 93 A SER 94 n 94 SER 94 A LEU 95 n 95 LEU 95 A ALA 96 n 96 HIS 96 A ALA 97 n 97 PRO 97 A LYS 98 n 98 LYS 98 A ALA 99 n 99 ALA 99 A ALA 100 n 100 LYS 100 A ILE 101 n 101 ILE 101 A GLU 102 n 102 GLU 102 A GLU 103 n 103 GLU 103 A SER 104 n 104 SER 104 A PRO 105 n 105 PRO 105 A GLY 106 n 106 GLY 106 A ALA 107 n 107 ALA 107 A GLU 108 n 108 GLU 108 A LEU 109 n 109 LEU 109 A VAL 110 n 110 VAL 110 A VAL 111 n 111 VAL 111 A THR 112 n 112 THR 112 A GLU 113 n 113 GLU 113 A ARG 114 n 114 ARG 114 A ILE 115 n 115 ILE 115 A LEU 116 n 116 LEU 116 A n 117 117 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 5 A N TYR 5 A O THR 20 A O THR 20 A N ALA 17 A N ALA 17 A O ILE 77 A O ILE 77 A O HIS 74 A O HIS 74 A N ILE 65 A N ILE 65 A O GLN 55 A O GLN 55 A N ALA 48 A N ALA 48 A O GLN 46 A O GLN 46 A N TRP 34 A N TRP 34 A N MET 31 A N MET 31 A O ILE 93 A O ILE 93 A N SER 94 A N SER 94 A O LYS 100 A O LYS 100 A O GLN 55 A O GLN 55 A N ALA 48 A N ALA 48 A O GLN 46 A O GLN 46 A N TRP 34 A N TRP 34 A N MET 31 A N MET 31 A O ILE 93 A O ILE 93 A N TYR 88 A N TYR 88 A O ALA 107 A O ALA 107 A O THR 112 A O THR 112 A N VAL 11 A N VAL 11 1 A CG HIS 96 A CG HIS 96 1 Y 1 A ND1 HIS 96 A ND1 HIS 96 1 Y 1 A CD2 HIS 96 A CD2 HIS 96 1 Y 1 A CE1 HIS 96 A CE1 HIS 96 1 Y 1 A NE2 HIS 96 A NE2 HIS 96 1 Y 1 A CG PRO 97 A CG PRO 97 1 Y 1 A CD PRO 97 A CD PRO 97 1 Y 1 A CG LYS 100 A CG LYS 100 1 Y 1 A CD LYS 100 A CD LYS 100 1 Y 1 A CE LYS 100 A CE LYS 100 1 Y 1 A NZ LYS 100 A NZ LYS 100 1 Y 1 A GLU 117 A GLU 117 1 Y 1 A GLN 58 -146.74 -18.16 1 A ARG 70 69.25 -25.27 1 A LEU 95 -104.56 47.01 1 A HIS 96 -118.42 -137.42 1 A PRO 97 -22.87 -68.86 PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM WATER.TOP 18.6 -1.63 0.00 0.00 -3.29 0.00 4.92 0.228 0.009 0.198 0.213 0.198 2.00 18.78 672 6626 6425 10.5 97.1 RANDOM 178575.39 0.000000 1 RESTRAINED THROUGHOUT 0 MOLECULAR REPLACEMENT PDB ENTRY 1B88 Engh & Huber FLAT MODEL 41.0753 0.38404 0.27 0.21 5.00 0.19 0.14 2.00 18.78 73 979 0 0 906 0.005 1.3 27.2 0.78 1.33 1.50 2.02 2.00 1.96 2.00 2.73 2.50 0.228 0.030 0.202 2.07 57 503 10 10.2 92.0 8.7 2.00 20.00 1NPU 6677 6677 0 0 1 99.7 0.276 2.00 2.07 97 refinement CNS 1.0 data reduction HKL-2000 data scaling SCALEPACK phasing EPMR CRYSTAL STRUCTURE OF THE EXTRACELLULAR DOMAIN OF MURINE PD-1 1 N N 2 N N A ARG 81 A ARG 81 HELX_P A SER 85 A SER 85 5 1 5 disulf 2.036 A CYS 21 A SG CYS 21 1_555 A CYS 90 A SG CYS 90 1_555 IMMUNE SYSTEM Ig V-type domain, Structural Genomics, PSI, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC, IMMUNE SYSTEM A TYR 5 A TYR 5 1 A PRO 6 A PRO 6 0.00 PDCD1_MOUSE UNP 1 34 Q02242 SLTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFCNGLSQPVQDARFQIIQLPNRHDFHMNILDT RRNDSGIYLCGAISLHPKAKIEESPGAELVVTERILE 34 150 1NPU 1 117 Q02242 A 1 1 117 1 CYS engineered mutation SER 50 1NPU A Q02242 UNP 83 50 4 5 6 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel A LEU 2 A LEU 2 A TYR 5 A TYR 5 A ALA 17 A ALA 17 A LEU 23 A LEU 23 A ASP 72 A ASP 72 A ILE 77 A ILE 77 A PHE 62 A PHE 62 A GLN 66 A GLN 66 A LEU 53 A LEU 53 A PRO 56 A PRO 56 A THR 43 A THR 43 A SER 50 A SER 50 A MET 31 A MET 31 A LEU 37 A LEU 37 A GLY 86 A GLY 86 A SER 94 A SER 94 A LYS 100 A LYS 100 A GLU 103 A GLU 103 A LEU 53 A LEU 53 A PRO 56 A PRO 56 A THR 43 A THR 43 A SER 50 A SER 50 A MET 31 A MET 31 A LEU 37 A LEU 37 A GLY 86 A GLY 86 A SER 94 A SER 94 A ALA 107 A ALA 107 A THR 112 A THR 112 A TRP 8 A TRP 8 A SER 12 A SER 12 19 P 21 21 21