0.027100 0.000000 0.000000 0.000000 0.013072 0.000000 0.000000 0.000000 0.009814 0.00000 0.00000 0.00000 Pauly, T.A. Sulea, T. Ammirati, M. Sivaraman, J. Danley, D.E. Griffor, M.C. Kamath, A.V. Wang, I.K. Laird, E.R. Menard, R. Cygler, M. Rath, V.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90 90 90 36.9 76.5 101.9 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C24 H29 N3 O4 S 455.570 N-[(1R)-2-(BENZYLSULFANYL)-1-FORMYLETHYL]-N-(MORPHOLIN-4-YLCARBONYL)-L-PHENYLALANINAMIDE MORPHOLINE-4-CARBOXYLIC ACID [1-(2-BENZYLSULFANYL-1-FORMYL-ETHYLCARBAMOYL)-2-PHENYL-ETHYL]-AMIDE non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 N C N 76 N O N 77 N N N 78 N C N 79 N C N 80 N O N 81 N C N 82 N C N 83 S C N 84 N C N 85 N O N 86 N N N 87 R C N 88 N C N 89 N O N 90 N C N 91 N S N 92 N C Y 93 N C Y 94 N C Y 95 N C Y 96 N C Y 97 N C Y 98 N C N 99 N C Y 100 N C Y 101 N C Y 102 N C Y 103 N C Y 104 N C Y 105 N C N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N N N 136 R C N 137 N C N 138 N O N 139 N C N 140 N S N 141 N O N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N N N 150 S C N 151 N C N 152 N O N 153 N C N 154 N C N 155 N C N 156 N O N 157 N N N 158 N O N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N O N 177 N O N 178 N O N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N N N 189 N C N 190 N C N 191 N O N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N N N 199 S C N 200 N C N 201 N O N 202 N C Y 203 N C Y 204 N N Y 205 N C Y 206 N C Y 207 N N N 208 N O N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N O N 220 N H N 221 N H N 222 N N N 223 S C N 224 N C N 225 N O N 226 S C N 227 N C N 228 N C N 229 N C N 230 N O N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N N N 245 S C N 246 N C N 247 N O N 248 N C N 249 N C N 250 N C N 251 N C N 252 N O N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N N N 267 S C N 268 N C N 269 N O N 270 N C N 271 N C N 272 N C N 273 N C N 274 N N N 275 N O N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C N 296 N C N 297 N S N 298 N C N 299 N O N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N N N 312 S C N 313 N C N 314 N O N 315 N C Y 316 N C Y 317 N C Y 318 N C Y 319 N C Y 320 N C Y 321 N C N 322 N O N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N N N 335 S C N 336 N C N 337 N O N 338 N C N 339 N C N 340 N C N 341 N O N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N N N 352 S C N 353 N C N 354 N O N 355 N C N 356 N O N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N N N 366 S C N 367 N C N 368 N O N 369 R C N 370 N O N 371 N C N 372 N O N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N N N 383 S C N 384 N C N 385 N O N 386 N C Y 387 N C Y 388 N C Y 389 N C Y 390 N N Y 391 N C Y 392 N C Y 393 N C Y 394 N C Y 395 N C N 396 N O N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N N N 410 S C N 411 N C N 412 N O N 413 N C Y 414 N C Y 415 N C Y 416 N C Y 417 N C Y 418 N C Y 419 N C N 420 N O N 421 N O N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N N N 434 S C N 435 N C N 436 N O N 437 N C N 438 N C N 439 N C N 440 N O N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N doub N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N doub N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing Y 108 N doub Y 109 N sing Y 110 N sing N 111 N sing Y 112 N doub N 113 N sing Y 114 N sing N 115 N sing Y 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing Y 122 N doub Y 123 N sing Y 124 N sing N 125 N sing Y 126 N doub N 127 N sing Y 128 N sing N 129 N sing Y 130 N doub N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N doub N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N doub N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N doub N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N doub N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing Y 203 N sing Y 204 N doub Y 205 N doub N 206 N sing Y 207 N sing N 208 N sing Y 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N doub N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N doub N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N doub N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N doub N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N doub N 307 N sing N 308 N sing N 309 N sing N 310 N sing Y 311 N doub Y 312 N sing Y 313 N sing N 314 N sing Y 315 N doub N 316 N sing Y 317 N doub N 318 N sing Y 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N doub N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N doub N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N doub N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N doub N 376 N sing N 377 N sing N 378 N sing N 379 N sing Y 380 N doub Y 381 N sing Y 382 N sing N 383 N sing Y 384 N doub Y 385 N sing Y 386 N sing N 387 N sing Y 388 N sing Y 389 N doub N 390 N sing Y 391 N doub N 392 N sing Y 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N doub N 404 N sing N 405 N sing N 406 N sing N 407 N sing Y 408 N doub Y 409 N sing Y 410 N sing N 411 N sing Y 412 N doub N 413 N sing Y 414 N doub N 415 N sing Y 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N doub N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing US Biochemistry BICHAW 0033 0006-2960 42 3203 3213 10.1021/bi027308i 12641451 Specificity determinants of human cathepsin s revealed by crystal structures of complexes. 2003 10.2210/pdb1nqc/pdb pdb_00001nqc 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2001-07-07 ADSC QUANTUM 4 Silicon SINGLE WAVELENGTH M x-ray 1 1.00 1.0 5.0.2 ALS 1.00 SYNCHROTRON ALS BEAMLINE 5.0.2 24020.963 Cathepsin S 3.4.22.27 1 nat polymer 455.570 N-[(1R)-2-(BENZYLSULFANYL)-1-FORMYLETHYL]-N-(MORPHOLIN-4-YLCARBONYL)-L-PHENYLALANINAMIDE 1 syn non-polymer 18.015 water 245 nat water no no LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIID NKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIID NKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample 9606 Homo sapiens 1 2.62 52.60 VAPOR DIFFUSION, HANGING DROP 5.5 Sodium Acetate, Ammonium Sulphate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_site repository Initial release Version format compliance Version format compliance Refinement description Data collection Database references Derived calculations Refinement description 1 0 2003-04-15 1 1 2008-04-29 1 2 2011-07-13 1 3 2017-10-11 1 4 2023-08-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2003-01-21 REL REL C4P N-[(1R)-2-(BENZYLSULFANYL)-1-FORMYLETHYL]-N-(MORPHOLIN-4-YLCARBONYL)-L-PHENYLALANINAMIDE HOH water 1ATK Search model consists of a polyalanine homolgy model of cathepsin S constructed from cathepsin K (PDB code 1atk) and Cathepsin L from the procathepsin L (PDB code 1cj1) PDB experimental model 1CJ1 Search model consists of a polyalanine homolgy model of cathepsin S constructed from cathepsin K (PDB code 1atk) and Cathepsin L from the procathepsin L (PDB code 1cj1) PDB experimental model CP2 25 2 C4P C4P 218 A TIP 500 3 HOH HOH 500 A TIP 501 3 HOH HOH 501 A TIP 502 3 HOH HOH 502 A TIP 503 3 HOH HOH 503 A TIP 504 3 HOH HOH 504 A TIP 505 3 HOH HOH 505 A TIP 506 3 HOH HOH 506 A TIP 507 3 HOH HOH 507 A TIP 508 3 HOH HOH 508 A TIP 509 3 HOH HOH 509 A TIP 510 3 HOH HOH 510 A TIP 511 3 HOH HOH 511 A TIP 512 3 HOH HOH 512 A TIP 513 3 HOH HOH 513 A TIP 514 3 HOH HOH 514 A TIP 515 3 HOH HOH 515 A TIP 516 3 HOH HOH 516 A TIP 517 3 HOH HOH 517 A TIP 518 3 HOH HOH 518 A TIP 519 3 HOH HOH 519 A TIP 520 3 HOH HOH 520 A TIP 521 3 HOH HOH 521 A TIP 522 3 HOH HOH 522 A TIP 523 3 HOH HOH 523 A TIP 524 3 HOH HOH 524 A TIP 525 3 HOH HOH 525 A TIP 526 3 HOH HOH 526 A TIP 527 3 HOH HOH 527 A TIP 528 3 HOH HOH 528 A TIP 529 3 HOH HOH 529 A TIP 530 3 HOH HOH 530 A TIP 531 3 HOH HOH 531 A TIP 532 3 HOH HOH 532 A TIP 533 3 HOH HOH 533 A TIP 534 3 HOH HOH 534 A TIP 535 3 HOH HOH 535 A TIP 536 3 HOH HOH 536 A TIP 537 3 HOH HOH 537 A TIP 538 3 HOH HOH 538 A TIP 539 3 HOH HOH 539 A TIP 540 3 HOH HOH 540 A TIP 541 3 HOH HOH 541 A TIP 542 3 HOH HOH 542 A TIP 543 3 HOH HOH 543 A TIP 544 3 HOH HOH 544 A TIP 545 3 HOH HOH 545 A TIP 546 3 HOH HOH 546 A TIP 547 3 HOH HOH 547 A TIP 548 3 HOH HOH 548 A TIP 549 3 HOH HOH 549 A TIP 550 3 HOH HOH 550 A TIP 551 3 HOH HOH 551 A TIP 552 3 HOH HOH 552 A TIP 553 3 HOH HOH 553 A TIP 554 3 HOH HOH 554 A TIP 555 3 HOH HOH 555 A TIP 556 3 HOH HOH 556 A TIP 557 3 HOH HOH 557 A TIP 558 3 HOH HOH 558 A TIP 559 3 HOH HOH 559 A TIP 560 3 HOH HOH 560 A TIP 561 3 HOH HOH 561 A TIP 562 3 HOH HOH 562 A TIP 563 3 HOH HOH 563 A TIP 564 3 HOH HOH 564 A TIP 565 3 HOH HOH 565 A TIP 566 3 HOH HOH 566 A TIP 567 3 HOH HOH 567 A TIP 568 3 HOH HOH 568 A TIP 569 3 HOH HOH 569 A TIP 570 3 HOH HOH 570 A TIP 571 3 HOH HOH 571 A TIP 572 3 HOH HOH 572 A TIP 573 3 HOH HOH 573 A TIP 574 3 HOH HOH 574 A TIP 575 3 HOH HOH 575 A TIP 576 3 HOH HOH 576 A TIP 577 3 HOH HOH 577 A TIP 578 3 HOH HOH 578 A TIP 579 3 HOH HOH 579 A TIP 580 3 HOH HOH 580 A TIP 581 3 HOH HOH 581 A TIP 582 3 HOH HOH 582 A TIP 583 3 HOH HOH 583 A TIP 584 3 HOH HOH 584 A TIP 585 3 HOH HOH 585 A TIP 586 3 HOH HOH 586 A TIP 587 3 HOH HOH 587 A TIP 588 3 HOH HOH 588 A TIP 589 3 HOH HOH 589 A TIP 590 3 HOH HOH 590 A TIP 591 3 HOH HOH 591 A TIP 592 3 HOH HOH 592 A TIP 593 3 HOH HOH 593 A TIP 594 3 HOH HOH 594 A TIP 595 3 HOH HOH 595 A TIP 596 3 HOH HOH 596 A TIP 597 3 HOH HOH 597 A TIP 598 3 HOH HOH 598 A TIP 599 3 HOH HOH 599 A TIP 600 3 HOH HOH 600 A TIP 601 3 HOH HOH 601 A TIP 602 3 HOH HOH 602 A TIP 603 3 HOH HOH 603 A TIP 604 3 HOH HOH 604 A TIP 605 3 HOH HOH 605 A TIP 606 3 HOH HOH 606 A TIP 607 3 HOH HOH 607 A TIP 608 3 HOH HOH 608 A TIP 609 3 HOH HOH 609 A TIP 610 3 HOH HOH 610 A TIP 611 3 HOH HOH 611 A TIP 612 3 HOH HOH 612 A TIP 613 3 HOH HOH 613 A TIP 614 3 HOH HOH 614 A TIP 615 3 HOH HOH 615 A TIP 616 3 HOH HOH 616 A TIP 617 3 HOH HOH 617 A TIP 618 3 HOH HOH 618 A TIP 619 3 HOH HOH 619 A TIP 620 3 HOH HOH 620 A TIP 621 3 HOH HOH 621 A TIP 622 3 HOH HOH 622 A TIP 623 3 HOH HOH 623 A TIP 624 3 HOH HOH 624 A TIP 625 3 HOH HOH 625 A TIP 626 3 HOH HOH 626 A TIP 627 3 HOH HOH 627 A TIP 628 3 HOH HOH 628 A TIP 629 3 HOH HOH 629 A TIP 630 3 HOH HOH 630 A TIP 631 3 HOH HOH 631 A TIP 632 3 HOH HOH 632 A TIP 633 3 HOH HOH 633 A TIP 634 3 HOH HOH 634 A TIP 635 3 HOH HOH 635 A TIP 636 3 HOH HOH 636 A TIP 637 3 HOH HOH 637 A TIP 638 3 HOH HOH 638 A TIP 639 3 HOH HOH 639 A TIP 640 3 HOH HOH 640 A TIP 641 3 HOH HOH 641 A TIP 642 3 HOH HOH 642 A TIP 643 3 HOH HOH 643 A TIP 644 3 HOH HOH 644 A TIP 645 3 HOH HOH 645 A TIP 646 3 HOH HOH 646 A TIP 647 3 HOH HOH 647 A TIP 648 3 HOH HOH 648 A TIP 649 3 HOH HOH 649 A TIP 650 3 HOH HOH 650 A TIP 651 3 HOH HOH 651 A TIP 652 3 HOH HOH 652 A TIP 653 3 HOH HOH 653 A TIP 654 3 HOH HOH 654 A TIP 655 3 HOH HOH 655 A TIP 656 3 HOH HOH 656 A TIP 657 3 HOH HOH 657 A TIP 658 3 HOH HOH 658 A TIP 659 3 HOH HOH 659 A TIP 660 3 HOH HOH 660 A TIP 661 3 HOH HOH 661 A TIP 662 3 HOH HOH 662 A TIP 663 3 HOH HOH 663 A TIP 664 3 HOH HOH 664 A TIP 665 3 HOH HOH 665 A TIP 666 3 HOH HOH 666 A TIP 667 3 HOH HOH 667 A TIP 668 3 HOH HOH 668 A TIP 669 3 HOH HOH 669 A TIP 670 3 HOH HOH 670 A TIP 671 3 HOH HOH 671 A TIP 672 3 HOH HOH 672 A TIP 673 3 HOH HOH 673 A TIP 674 3 HOH HOH 674 A TIP 675 3 HOH HOH 675 A TIP 676 3 HOH HOH 676 A TIP 677 3 HOH HOH 677 A TIP 678 3 HOH HOH 678 A TIP 679 3 HOH HOH 679 A TIP 680 3 HOH HOH 680 A TIP 681 3 HOH HOH 681 A TIP 682 3 HOH HOH 682 A TIP 683 3 HOH HOH 683 A TIP 684 3 HOH HOH 684 A TIP 685 3 HOH HOH 685 A TIP 686 3 HOH HOH 686 A TIP 687 3 HOH HOH 687 A TIP 688 3 HOH HOH 688 A TIP 689 3 HOH HOH 689 A TIP 690 3 HOH HOH 690 A TIP 691 3 HOH HOH 691 A TIP 692 3 HOH HOH 692 A TIP 693 3 HOH HOH 693 A TIP 694 3 HOH HOH 694 A TIP 695 3 HOH HOH 695 A TIP 696 3 HOH HOH 696 A TIP 697 3 HOH HOH 697 A TIP 698 3 HOH HOH 698 A TIP 699 3 HOH HOH 699 A TIP 700 3 HOH HOH 700 A TIP 701 3 HOH HOH 701 A TIP 702 3 HOH HOH 702 A TIP 703 3 HOH HOH 703 A TIP 705 3 HOH HOH 705 A TIP 706 3 HOH HOH 706 A TIP 708 3 HOH HOH 708 A TIP 709 3 HOH HOH 709 A TIP 710 3 HOH HOH 710 A TIP 711 3 HOH HOH 711 A TIP 712 3 HOH HOH 712 A TIP 713 3 HOH HOH 713 A TIP 714 3 HOH HOH 714 A TIP 715 3 HOH HOH 715 A TIP 716 3 HOH HOH 716 A TIP 717 3 HOH HOH 717 A TIP 718 3 HOH HOH 718 A TIP 719 3 HOH HOH 719 A TIP 720 3 HOH HOH 720 A TIP 721 3 HOH HOH 721 A TIP 722 3 HOH HOH 722 A TIP 723 3 HOH HOH 723 A TIP 724 3 HOH HOH 724 A TIP 725 3 HOH HOH 725 A TIP 726 3 HOH HOH 726 A TIP 727 3 HOH HOH 727 A TIP 728 3 HOH HOH 728 A TIP 729 3 HOH HOH 729 A TIP 730 3 HOH HOH 730 A TIP 731 3 HOH HOH 731 A TIP 732 3 HOH HOH 732 A TIP 733 3 HOH HOH 733 A TIP 734 3 HOH HOH 734 A TIP 735 3 HOH HOH 735 A TIP 736 3 HOH HOH 736 A TIP 737 3 HOH HOH 737 A TIP 738 3 HOH HOH 738 A TIP 739 3 HOH HOH 739 A TIP 740 3 HOH HOH 740 A TIP 741 3 HOH HOH 741 A TIP 742 3 HOH HOH 742 A TIP 743 3 HOH HOH 743 A TIP 744 3 HOH HOH 744 A TIP 745 3 HOH HOH 745 A TIP 746 3 HOH HOH 746 A LEU 1 n 1 LEU 1 A PRO 2 n 2 PRO 2 A ASP 3 n 3 ASP 3 A SER 4 n 4 SER 4 A VAL 5 n 5 VAL 5 A ASP 6 n 6 ASP 6 A TRP 7 n 7 TRP 7 A ARG 8 n 8 ARG 8 A GLU 9 n 9 GLU 9 A LYS 10 n 10 LYS 10 A GLY 11 n 11 GLY 11 A CYS 12 n 12 CYS 12 A VAL 13 n 13 VAL 13 A THR 14 n 14 THR 14 A GLU 15 n 15 GLU 15 A VAL 16 n 16 VAL 16 A LYS 17 n 17 LYS 17 A TYR 18 n 18 TYR 18 A GLN 19 n 19 GLN 19 A GLY 20 n 20 GLY 20 A SER 21 n 21 SER 21 A CYS 22 n 22 CYS 22 A GLY 23 n 23 GLY 23 A ALA 24 n 24 ALA 24 A CP2 25 n 25 CYS 25 A TRP 26 n 26 TRP 26 A ALA 27 n 27 ALA 27 A PHE 28 n 28 PHE 28 A SER 29 n 29 SER 29 A ALA 30 n 30 ALA 30 A VAL 31 n 31 VAL 31 A GLY 32 n 32 GLY 32 A ALA 33 n 33 ALA 33 A LEU 34 n 34 LEU 34 A GLU 35 n 35 GLU 35 A ALA 36 n 36 ALA 36 A GLN 37 n 37 GLN 37 A LEU 38 n 38 LEU 38 A LYS 39 n 39 LYS 39 A LEU 40 n 40 LEU 40 A LYS 41 n 41 LYS 41 A THR 42 n 42 THR 42 A GLY 43 n 43 GLY 43 A LYS 44 n 44 LYS 44 A LEU 45 n 45 LEU 45 A VAL 46 n 46 VAL 46 A THR 47 n 47 THR 47 A LEU 48 n 48 LEU 48 A SER 49 n 49 SER 49 A ALA 50 n 50 ALA 50 A GLN 51 n 51 GLN 51 A ASN 52 n 52 ASN 52 A LEU 53 n 53 LEU 53 A VAL 54 n 54 VAL 54 A ASP 55 n 55 ASP 55 A CYS 56 n 56 CYS 56 A SER 57 n 57 SER 57 A THR 58 n 58 THR 58 A GLU 59 n 59 GLU 59 A LYS 60 n 60 LYS 60 A TYR 61 n 61 TYR 61 A GLY 62 n 62 GLY 62 A ASN 63 n 63 ASN 63 A LYS 64 n 64 LYS 64 A GLY 65 n 65 GLY 65 A CYS 66 n 66 CYS 66 A ASN 67 n 67 ASN 67 A GLY 68 n 68 GLY 68 A GLY 69 n 69 GLY 69 A PHE 70 n 70 PHE 70 A MET 71 n 71 MET 71 A THR 72 n 72 THR 72 A THR 73 n 73 THR 73 A ALA 74 n 74 ALA 74 A PHE 75 n 75 PHE 75 A GLN 76 n 76 GLN 76 A TYR 77 n 77 TYR 77 A ILE 78 n 78 ILE 78 A ILE 79 n 79 ILE 79 A ASP 80 n 80 ASP 80 A ASN 81 n 81 ASN 81 A LYS 82 n 82 LYS 82 A GLY 83 n 83 GLY 83 A ILE 84 n 84 ILE 84 A ASP 85 n 85 ASP 85 A SER 86 n 86 SER 86 A ASP 87 n 87 ASP 87 A ALA 88 n 88 ALA 88 A SER 89 n 89 SER 89 A TYR 90 n 90 TYR 90 A PRO 91 n 91 PRO 91 A TYR 92 n 92 TYR 92 A LYS 93 n 93 LYS 93 A ALA 94 n 94 ALA 94 A MET 95 n 95 MET 95 A ASP 96 n 96 ASP 96 A GLN 97 n 97 GLN 97 A LYS 98 n 98 LYS 98 A CYS 99 n 99 CYS 99 A GLN 100 n 100 GLN 100 A TYR 101 n 101 TYR 101 A ASP 102 n 102 ASP 102 A SER 103 n 103 SER 103 A LYS 104 n 104 LYS 104 A TYR 105 n 105 TYR 105 A ARG 106 n 106 ARG 106 A ALA 107 n 107 ALA 107 A ALA 108 n 108 ALA 108 A THR 109 n 109 THR 109 A CYS 110 n 110 CYS 110 A SER 111 n 111 SER 111 A LYS 112 n 112 LYS 112 A TYR 113 n 113 TYR 113 A THR 114 n 114 THR 114 A GLU 115 n 115 GLU 115 A LEU 116 n 116 LEU 116 A PRO 117 n 117 PRO 117 A TYR 118 n 118 TYR 118 A GLY 119 n 119 GLY 119 A ARG 120 n 120 ARG 120 A GLU 121 n 121 GLU 121 A ASP 122 n 122 ASP 122 A VAL 123 n 123 VAL 123 A LEU 124 n 124 LEU 124 A LYS 125 n 125 LYS 125 A GLU 126 n 126 GLU 126 A ALA 127 n 127 ALA 127 A VAL 128 n 128 VAL 128 A ALA 129 n 129 ALA 129 A ASN 130 n 130 ASN 130 A LYS 131 n 131 LYS 131 A GLY 132 n 132 GLY 132 A PRO 133 n 133 PRO 133 A VAL 134 n 134 VAL 134 A SER 135 n 135 SER 135 A VAL 136 n 136 VAL 136 A GLY 137 n 137 GLY 137 A VAL 138 n 138 VAL 138 A ASP 139 n 139 ASP 139 A ALA 140 n 140 ALA 140 A ARG 141 n 141 ARG 141 A HIS 142 n 142 HIS 142 A PRO 143 n 143 PRO 143 A SER 144 n 144 SER 144 A PHE 145 n 145 PHE 145 A PHE 146 n 146 PHE 146 A LEU 147 n 147 LEU 147 A TYR 148 n 148 TYR 148 A ARG 149 n 149 ARG 149 A SER 150 n 150 SER 150 A GLY 151 n 151 GLY 151 A VAL 152 n 152 VAL 152 A TYR 153 n 153 TYR 153 A TYR 154 n 154 TYR 154 A GLU 155 n 155 GLU 155 A PRO 156 n 156 PRO 156 A SER 157 n 157 SER 157 A CYS 158 n 158 CYS 158 A THR 159 n 159 THR 159 A GLN 160 n 160 GLN 160 A ASN 161 n 161 ASN 161 A VAL 162 n 162 VAL 162 A ASN 163 n 163 ASN 163 A HIS 164 n 164 HIS 164 A GLY 165 n 165 GLY 165 A VAL 166 n 166 VAL 166 A LEU 167 n 167 LEU 167 A VAL 168 n 168 VAL 168 A VAL 169 n 169 VAL 169 A GLY 170 n 170 GLY 170 A TYR 171 n 171 TYR 171 A GLY 172 n 172 GLY 172 A ASP 173 n 173 ASP 173 A LEU 174 n 174 LEU 174 A ASN 175 n 175 ASN 175 A GLY 176 n 176 GLY 176 A LYS 177 n 177 LYS 177 A GLU 178 n 178 GLU 178 A TYR 179 n 179 TYR 179 A TRP 180 n 180 TRP 180 A LEU 181 n 181 LEU 181 A VAL 182 n 182 VAL 182 A LYS 183 n 183 LYS 183 A ASN 184 n 184 ASN 184 A SER 185 n 185 SER 185 A TRP 186 n 186 TRP 186 A GLY 187 n 187 GLY 187 A HIS 188 n 188 HIS 188 A ASN 189 n 189 ASN 189 A PHE 190 n 190 PHE 190 A GLY 191 n 191 GLY 191 A GLU 192 n 192 GLU 192 A GLU 193 n 193 GLU 193 A GLY 194 n 194 GLY 194 A TYR 195 n 195 TYR 195 A ILE 196 n 196 ILE 196 A ARG 197 n 197 ARG 197 A MET 198 n 198 MET 198 A ALA 199 n 199 ALA 199 A ARG 200 n 200 ARG 200 A ASN 201 n 201 ASN 201 A LYS 202 n 202 LYS 202 A GLY 203 n 203 GLY 203 A ASN 204 n 204 ASN 204 A HIS 205 n 205 HIS 205 A CYS 206 n 206 CYS 206 A GLY 207 n 207 GLY 207 A ILE 208 n 208 ILE 208 A ALA 209 n 209 ALA 209 A SER 210 n 210 SER 210 A PHE 211 n 211 PHE 211 A PRO 212 n 212 PRO 212 A SER 213 n 213 SER 213 A TYR 214 n 214 TYR 214 A PRO 215 n 215 PRO 215 A GLU 216 n 216 GLU 216 A ILE 217 n 217 ILE 217 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 153 A N TYR 153 A O ARG 197 A O ARG 197 A O ILE 196 A O ILE 196 A N VAL 182 A N VAL 182 A O LYS 183 A O LYS 183 A N LEU 167 A N LEU 167 A O TYR 171 A O TYR 171 A N VAL 5 A N VAL 5 A N TYR 153 A N TYR 153 A O ARG 197 A O ARG 197 A O ILE 196 A O ILE 196 A N VAL 182 A N VAL 182 A O LYS 183 A O LYS 183 A N LEU 167 A N LEU 167 A O VAL 168 A O VAL 168 A N VAL 134 A N VAL 134 A N ILE 84 A N ILE 84 A O ALA 107 A O ALA 107 A N THR 114 A N THR 114 A O TYR 214 A O TYR 214 1 A A CB SG CYS CYS 25 25 -0.147 0.016 1.812 1.665 N 1 A A O O HOH HOH 722 740 2.13 1_555 4_556 1 A THR 58 -109.14 -133.17 1 A ASN 163 -151.25 -0.42 0.219 0.199 1.8 30.0 1184 24541 24541 RANDOM 1 0 0 MOLECULAR REPLACEMENT Search model consists of a polyalanine homolgy model of cathepsin S constructed from cathepsin K (PDB code 1atk) and Cathepsin L from the procathepsin L (PDB code 1cj1) Engh & Huber 0.02 1.8 30.0 245 1964 32 0 1687 0.01 1.4 23.2 0.86 1.8 30.0 1NQC 207895 207486 0 0 0.148 1 6.4 91.4 1.8 1.83 0.535 50.5 data processing Adxv data scaling SCALEPACK refinement CNS phasing CNS Crystal structures of Cathepsin S inhibitor complexes 1 N N 2 N N 3 N N A ARG 8 A ARG 8 HELX_P A GLY 11 A GLY 11 5 1 4 A ALA 24 A ALA 24 HELX_P A GLY 43 A GLY 43 1 2 20 A SER 49 A SER 49 HELX_P A SER 57 A SER 57 1 3 9 A THR 58 A THR 58 HELX_P A GLY 62 A GLY 62 5 4 5 A LYS 64 A LYS 64 HELX_P A GLY 68 A GLY 68 5 5 5 A PHE 70 A PHE 70 HELX_P A LYS 82 A LYS 82 1 6 13 A ASP 102 A ASP 102 HELX_P A LYS 104 A LYS 104 5 7 3 A ARG 120 A ARG 120 HELX_P A LYS 131 A LYS 131 1 8 12 A HIS 142 A HIS 142 HELX_P A TYR 148 A TYR 148 1 9 7 A ASN 204 A ASN 204 HELX_P A ILE 208 A ILE 208 5 10 5 disulf 2.495 A CYS 22 A SG CYS 22 1_555 A CYS 66 A SG CYS 66 1_555 disulf 2.874 A CYS 56 A SG CYS 56 1_555 A CYS 99 A SG CYS 99 1_555 disulf 2.302 A CYS 158 A SG CYS 158 1_555 A CYS 206 A SG CYS 206 1_555 covale 1.654 none A CYS 25 A SG CYS 25 1_555 A C4P 218 B C56 C4P 1_555 HYDROLASE Antigen presentation, binding specificity, cysteine proteases, inhibitor complexes, structure-based design, structural plasticity, HYDROLASE CATS_HUMAN UNP 1 115 P25774 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIID NKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 115 331 1NQC 1 217 P25774 A 1 1 217 5 5 2 2 parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 152 A VAL 152 A TYR 153 A TYR 153 A TYR 195 A TYR 195 A ALA 199 A ALA 199 A LYS 177 A LYS 177 A LYS 183 A LYS 183 A HIS 164 A HIS 164 A LEU 174 A LEU 174 A VAL 5 A VAL 5 A ASP 6 A ASP 6 A VAL 152 A VAL 152 A TYR 153 A TYR 153 A TYR 195 A TYR 195 A ALA 199 A ALA 199 A LYS 177 A LYS 177 A LYS 183 A LYS 183 A HIS 164 A HIS 164 A LEU 174 A LEU 174 A VAL 134 A VAL 134 A VAL 138 A VAL 138 A ILE 84 A ILE 84 A ASP 85 A ASP 85 A ARG 106 A ARG 106 A ALA 108 A ALA 108 A LYS 112 A LYS 112 A GLU 115 A GLU 115 A SER 213 A SER 213 A GLU 216 A GLU 216 BINDING SITE FOR RESIDUE C4P A 218 A C4P 218 Software 21 A GLN 19 A GLN 19 21 1_555 A SER 21 A SER 21 21 1_555 A GLY 23 A GLY 23 21 1_555 A CYS 25 A CYS 25 21 1_555 A TRP 26 A TRP 26 21 1_555 A GLY 62 A GLY 62 21 1_555 A LYS 64 A LYS 64 21 1_555 A CYS 66 A CYS 66 21 1_555 A ASN 67 A ASN 67 21 1_555 A GLY 68 A GLY 68 21 1_555 A GLY 69 A GLY 69 21 1_555 A PHE 70 A PHE 70 21 1_555 A MET 71 A MET 71 21 1_555 A PRO 143 A PRO 143 21 4_556 A LEU 147 A LEU 147 21 4_556 A GLN 160 A GLN 160 21 4_456 A VAL 162 A VAL 162 21 1_555 A ASN 163 A ASN 163 21 1_555 A HOH 625 C HOH 21 4_456 A HOH 655 C HOH 21 1_555 A HOH 699 C HOH 21 1_555 19 P 21 21 21