0.024624
0.000000
0.000000
0.000000
0.010617
0.000000
0.000000
0.000000
0.022775
0.00000
0.00000
0.00000
Kang, L.W.
Gabelli, S.B.
Bianchet, M.A.
Xu, W.L.
Bessman, M.J.
Amzel, L.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
40.610
94.185
43.908
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
O
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
N
N
58
S
C
N
59
N
C
N
60
N
O
N
61
N
C
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
N
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
N
N
78
S
C
N
79
N
C
N
80
N
O
N
81
N
C
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
O
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
N
N
97
N
C
N
98
N
C
N
99
N
O
N
100
N
O
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
N
N
107
S
C
N
108
N
C
N
109
N
O
N
110
N
C
Y
111
N
C
Y
112
N
N
Y
113
N
C
Y
114
N
C
Y
115
N
N
N
116
N
O
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
O
N
128
N
H
N
129
N
H
N
130
N
N
N
131
S
C
N
132
N
C
N
133
N
O
N
134
S
C
N
135
N
C
N
136
N
C
N
137
N
C
N
138
N
O
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
N
N
153
S
C
N
154
N
C
N
155
N
O
N
156
N
C
N
157
N
C
N
158
N
C
N
159
N
C
N
160
N
O
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
N
N
175
S
C
N
176
N
C
N
177
N
O
N
178
N
C
N
179
N
C
N
180
N
C
N
181
N
C
N
182
N
N
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
N
N
200
S
C
N
201
N
C
N
202
N
O
N
203
N
C
N
204
N
C
N
205
N
S
N
206
N
C
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
N
N
220
S
C
N
221
N
C
N
222
N
O
N
223
N
C
Y
224
N
C
Y
225
N
C
Y
226
N
C
Y
227
N
C
Y
228
N
C
Y
229
N
C
N
230
N
O
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
N
N
243
S
C
N
244
N
C
N
245
N
O
N
246
N
C
N
247
N
C
N
248
N
C
N
249
N
O
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
O
N
265
N
O
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
R
C
N
278
N
O
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
Y
295
N
C
Y
296
N
C
Y
297
N
C
Y
298
N
N
Y
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
N
304
N
O
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
N
N
318
S
C
N
319
N
C
N
320
N
O
N
321
N
C
Y
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
C
Y
327
N
C
N
328
N
O
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
N
N
342
S
C
N
343
N
C
N
344
N
O
N
345
N
C
N
346
N
C
N
347
N
C
N
348
N
O
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
doub
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
Y
111
N
sing
Y
112
N
doub
Y
113
N
doub
N
114
N
sing
Y
115
N
sing
N
116
N
sing
Y
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
doub
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
Y
219
N
doub
Y
220
N
sing
Y
221
N
sing
N
222
N
sing
Y
223
N
doub
N
224
N
sing
Y
225
N
doub
N
226
N
sing
Y
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
doub
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
doub
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
Y
288
N
doub
Y
289
N
sing
Y
290
N
sing
N
291
N
sing
Y
292
N
doub
Y
293
N
sing
Y
294
N
sing
N
295
N
sing
Y
296
N
sing
Y
297
N
doub
N
298
N
sing
Y
299
N
doub
N
300
N
sing
Y
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
doub
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
Y
316
N
doub
Y
317
N
sing
Y
318
N
sing
N
319
N
sing
Y
320
N
doub
N
321
N
sing
Y
322
N
doub
N
323
N
sing
Y
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
US
J.Bacteriol.
JOBAAY
0767
0021-9193
185
4110
4118
10.1128/JB.185.14.4110-4118.2003
12837785
Structure of a coenzyme A pyrophosphatase from Deinococcus radiodurans: a member of the Nudix family.
2003
10.2210/pdb1nqy/pdb
pdb_00001nqy
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
90
1
CCD
2000-07-20
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
1.009
1.0
X25
NSLS
1.009
SYNCHROTRON
NSLS BEAMLINE X25
21273.229
CoA pyrophosphatase (MutT/nudix family protein)
3.6.1.9
1
man
polymer
18.015
water
96
nat
water
no
no
MTAPHDPLDDIQADPWALWLSGRTRTALELPHYRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPT
QAALREAQEEVALDPAAVTLLGELDDVFTPVGFHVTPVLGRIAPEALDTLRVTPEVAQIITPTLAELRAVPLVRERRTLP
DGTEVPLYRYPWRGLDIWGMTARVLHDLLEQGPG
MTAPHDPLDDIQADPWALWLSGRTRTALELPHYRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPT
QAALREAQEEVALDPAAVTLLGELDDVFTPVGFHVTPVLGRIAPEALDTLRVTPEVAQIITPTLAELRAVPLVRERRTLP
DGTEVPLYRYPWRGLDIWGMTARVLHDLLEQGPG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Deinococcus
Escherichia
sample
Dr1184
1299
Deinococcus radiodurans
562
Escherichia coli
pET24a(+)
1
1.97
37.62
VAPOR DIFFUSION, HANGING DROP
6.0
PEG1500, MES buffer, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
1
0
2003-05-13
1
1
2008-04-29
1
2
2011-07-13
1
3
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
The structure of a CoA pyrophosphatase from D.Radiodurans complexed with a magnesium ion
RCSB
Y
RCSB
2003-01-23
REL
HOH
water
WAT
191
2
HOH
HOH
195
A
WAT
192
2
HOH
HOH
196
A
WAT
193
2
HOH
HOH
197
A
WAT
194
2
HOH
HOH
198
A
WAT
195
2
HOH
HOH
199
A
WAT
196
2
HOH
HOH
200
A
WAT
197
2
HOH
HOH
201
A
WAT
198
2
HOH
HOH
202
A
WAT
199
2
HOH
HOH
203
A
WAT
200
2
HOH
HOH
204
A
WAT
201
2
HOH
HOH
205
A
WAT
202
2
HOH
HOH
206
A
WAT
203
2
HOH
HOH
207
A
WAT
204
2
HOH
HOH
208
A
WAT
205
2
HOH
HOH
209
A
WAT
206
2
HOH
HOH
210
A
WAT
207
2
HOH
HOH
211
A
WAT
208
2
HOH
HOH
212
A
WAT
209
2
HOH
HOH
213
A
WAT
210
2
HOH
HOH
214
A
WAT
211
2
HOH
HOH
215
A
WAT
212
2
HOH
HOH
216
A
WAT
213
2
HOH
HOH
217
A
WAT
214
2
HOH
HOH
218
A
WAT
215
2
HOH
HOH
219
A
WAT
216
2
HOH
HOH
220
A
WAT
217
2
HOH
HOH
221
A
WAT
218
2
HOH
HOH
222
A
WAT
219
2
HOH
HOH
223
A
WAT
220
2
HOH
HOH
224
A
WAT
221
2
HOH
HOH
225
A
WAT
222
2
HOH
HOH
226
A
WAT
223
2
HOH
HOH
227
A
WAT
224
2
HOH
HOH
228
A
WAT
225
2
HOH
HOH
229
A
WAT
226
2
HOH
HOH
230
A
WAT
227
2
HOH
HOH
231
A
WAT
228
2
HOH
HOH
232
A
WAT
229
2
HOH
HOH
233
A
WAT
231
2
HOH
HOH
234
A
WAT
232
2
HOH
HOH
235
A
WAT
233
2
HOH
HOH
236
A
WAT
234
2
HOH
HOH
237
A
WAT
235
2
HOH
HOH
238
A
WAT
236
2
HOH
HOH
239
A
WAT
237
2
HOH
HOH
240
A
WAT
238
2
HOH
HOH
241
A
WAT
239
2
HOH
HOH
242
A
WAT
240
2
HOH
HOH
243
A
WAT
241
2
HOH
HOH
244
A
WAT
242
2
HOH
HOH
245
A
WAT
243
2
HOH
HOH
246
A
WAT
244
2
HOH
HOH
247
A
WAT
245
2
HOH
HOH
248
A
WAT
246
2
HOH
HOH
249
A
WAT
247
2
HOH
HOH
250
A
WAT
249
2
HOH
HOH
251
A
WAT
250
2
HOH
HOH
252
A
WAT
251
2
HOH
HOH
253
A
WAT
252
2
HOH
HOH
254
A
WAT
253
2
HOH
HOH
255
A
WAT
254
2
HOH
HOH
256
A
WAT
255
2
HOH
HOH
257
A
WAT
256
2
HOH
HOH
258
A
WAT
257
2
HOH
HOH
259
A
WAT
258
2
HOH
HOH
260
A
WAT
259
2
HOH
HOH
261
A
WAT
260
2
HOH
HOH
262
A
WAT
261
2
HOH
HOH
263
A
WAT
262
2
HOH
HOH
264
A
WAT
263
2
HOH
HOH
265
A
WAT
264
2
HOH
HOH
266
A
WAT
265
2
HOH
HOH
267
A
WAT
267
2
HOH
HOH
268
A
WAT
268
2
HOH
HOH
269
A
WAT
269
2
HOH
HOH
270
A
WAT
270
2
HOH
HOH
271
A
WAT
271
2
HOH
HOH
272
A
WAT
272
2
HOH
HOH
273
A
WAT
273
2
HOH
HOH
274
A
WAT
276
2
HOH
HOH
275
A
WAT
277
2
HOH
HOH
276
A
WAT
280
2
HOH
HOH
277
A
WAT
281
2
HOH
HOH
278
A
WAT
282
2
HOH
HOH
279
A
WAT
283
2
HOH
HOH
280
A
WAT
284
2
HOH
HOH
281
A
WAT
285
2
HOH
HOH
282
A
WAT
286
2
HOH
HOH
283
A
WAT
287
2
HOH
HOH
284
A
WAT
288
2
HOH
HOH
285
A
WAT
289
2
HOH
HOH
286
A
WAT
290
2
HOH
HOH
287
A
WAT
291
2
HOH
HOH
288
A
WAT
292
2
HOH
HOH
289
A
WAT
293
2
HOH
HOH
290
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
HIS
5
n
5
HIS
5
A
ASP
6
n
6
ASP
6
A
PRO
7
n
7
PRO
7
A
LEU
8
n
8
LEU
8
A
ASP
9
n
9
ASP
9
A
ASP
10
n
10
ASP
10
A
ILE
11
n
11
ILE
11
A
GLN
12
n
12
GLN
12
A
ALA
13
n
13
ALA
13
A
ASP
14
n
14
ASP
14
A
PRO
15
n
15
PRO
15
A
TRP
16
n
16
TRP
16
A
ALA
17
n
17
ALA
17
A
LEU
18
n
18
LEU
18
A
TRP
19
n
19
TRP
19
A
LEU
20
n
20
LEU
20
A
SER
21
n
21
SER
21
A
GLY
22
n
22
GLY
22
A
n
23
23
A
n
24
24
A
n
25
25
A
n
26
26
A
n
27
27
A
n
28
28
A
n
29
29
A
n
30
30
A
n
31
31
A
n
32
32
A
TYR
33
n
33
TYR
33
A
ARG
34
n
34
ARG
34
A
ARG
35
n
35
ARG
35
A
ALA
36
n
36
ALA
36
A
ALA
37
n
37
ALA
37
A
VAL
38
n
38
VAL
38
A
LEU
39
n
39
LEU
39
A
VAL
40
n
40
VAL
40
A
ALA
41
n
41
ALA
41
A
LEU
42
n
42
LEU
42
A
THR
43
n
43
THR
43
A
ARG
44
n
44
ARG
44
A
GLU
45
n
45
GLU
45
A
ALA
46
n
46
ALA
46
A
ASP
47
n
47
ASP
47
A
PRO
48
n
48
PRO
48
A
ARG
49
n
49
ARG
49
A
VAL
50
n
50
VAL
50
A
LEU
51
n
51
LEU
51
A
LEU
52
n
52
LEU
52
A
THR
53
n
53
THR
53
A
VAL
54
n
54
VAL
54
A
ARG
55
n
55
ARG
55
A
SER
56
n
56
SER
56
A
n
57
57
A
n
58
58
A
n
59
59
A
n
60
60
A
n
61
61
A
n
62
62
A
LYS
63
n
63
LYS
63
A
GLY
64
n
64
GLY
64
A
GLN
65
n
65
GLN
65
A
ILE
66
n
66
ILE
66
A
ALA
67
n
67
ALA
67
A
PHE
68
n
68
PHE
68
A
PRO
69
n
69
PRO
69
A
GLY
70
n
70
GLY
70
A
GLY
71
n
71
GLY
71
A
SER
72
n
72
SER
72
A
LEU
73
n
73
LEU
73
A
ASP
74
n
74
ASP
74
A
ALA
75
n
75
ALA
75
A
GLY
76
n
76
GLY
76
A
GLU
77
n
77
GLU
77
A
THR
78
n
78
THR
78
A
PRO
79
n
79
PRO
79
A
THR
80
n
80
THR
80
A
GLN
81
n
81
GLN
81
A
ALA
82
n
82
ALA
82
A
ALA
83
n
83
ALA
83
A
LEU
84
n
84
LEU
84
A
ARG
85
n
85
ARG
85
A
GLU
86
n
86
GLU
86
A
ALA
87
n
87
ALA
87
A
GLN
88
n
88
GLN
88
A
GLU
89
n
89
GLU
89
A
GLU
90
n
90
GLU
90
A
VAL
91
n
91
VAL
91
A
ALA
92
n
92
ALA
92
A
LEU
93
n
93
LEU
93
A
ASP
94
n
94
ASP
94
A
PRO
95
n
95
PRO
95
A
ALA
96
n
96
ALA
96
A
ALA
97
n
97
ALA
97
A
VAL
98
n
98
VAL
98
A
THR
99
n
99
THR
99
A
LEU
100
n
100
LEU
100
A
LEU
101
n
101
LEU
101
A
GLY
102
n
102
GLY
102
A
GLU
103
n
103
GLU
103
A
LEU
104
n
104
LEU
104
A
ASP
105
n
105
ASP
105
A
ASP
106
n
106
ASP
106
A
VAL
107
n
107
VAL
107
A
PHE
108
n
108
PHE
108
A
THR
109
n
109
THR
109
A
PRO
110
n
110
PRO
110
A
VAL
111
n
111
VAL
111
A
GLY
112
n
112
GLY
112
A
PHE
113
n
113
PHE
113
A
HIS
114
n
114
HIS
114
A
VAL
115
n
115
VAL
115
A
THR
116
n
116
THR
116
A
PRO
117
n
117
PRO
117
A
VAL
118
n
118
VAL
118
A
LEU
119
n
119
LEU
119
A
GLY
120
n
120
GLY
120
A
ARG
121
n
121
ARG
121
A
ILE
122
n
122
ILE
122
A
ALA
123
n
123
ALA
123
A
PRO
124
n
124
PRO
124
A
GLU
125
n
125
GLU
125
A
ALA
126
n
126
ALA
126
A
LEU
127
n
127
LEU
127
A
ASP
128
n
128
ASP
128
A
THR
129
n
129
THR
129
A
LEU
130
n
130
LEU
130
A
ARG
131
n
131
ARG
131
A
VAL
132
n
132
VAL
132
A
THR
133
n
133
THR
133
A
PRO
134
n
134
PRO
134
A
GLU
135
n
135
GLU
135
A
VAL
136
n
136
VAL
136
A
ALA
137
n
137
ALA
137
A
GLN
138
n
138
GLN
138
A
ILE
139
n
139
ILE
139
A
ILE
140
n
140
ILE
140
A
THR
141
n
141
THR
141
A
PRO
142
n
142
PRO
142
A
THR
143
n
143
THR
143
A
LEU
144
n
144
LEU
144
A
ALA
145
n
145
ALA
145
A
GLU
146
n
146
GLU
146
A
LEU
147
n
147
LEU
147
A
ARG
148
n
148
ARG
148
A
ALA
149
n
149
ALA
149
A
VAL
150
n
150
VAL
150
A
PRO
151
n
151
PRO
151
A
LEU
152
n
152
LEU
152
A
VAL
153
n
153
VAL
153
A
ARG
154
n
154
ARG
154
A
GLU
155
n
155
GLU
155
A
ARG
156
n
156
ARG
156
A
ARG
157
n
157
ARG
157
A
THR
158
n
158
THR
158
A
LEU
159
n
159
LEU
159
A
PRO
160
n
160
PRO
160
A
ASP
161
n
161
ASP
161
A
GLY
162
n
162
GLY
162
A
THR
163
n
163
THR
163
A
GLU
164
n
164
GLU
164
A
VAL
165
n
165
VAL
165
A
PRO
166
n
166
PRO
166
A
LEU
167
n
167
LEU
167
A
TYR
168
n
168
TYR
168
A
ARG
169
n
169
ARG
169
A
TYR
170
n
170
TYR
170
A
PRO
171
n
171
PRO
171
A
TRP
172
n
172
TRP
172
A
ARG
173
n
173
ARG
173
A
GLY
174
n
174
GLY
174
A
LEU
175
n
175
LEU
175
A
ASP
176
n
176
ASP
176
A
ILE
177
n
177
ILE
177
A
TRP
178
n
178
TRP
178
A
GLY
179
n
179
GLY
179
A
MET
180
n
180
MET
180
A
THR
181
n
181
THR
181
A
ALA
182
n
182
ALA
182
A
ARG
183
n
183
ARG
183
A
VAL
184
n
184
VAL
184
A
LEU
185
n
185
LEU
185
A
HIS
186
n
186
HIS
186
A
ASP
187
n
187
ASP
187
A
LEU
188
n
188
LEU
188
A
LEU
189
n
189
LEU
189
A
GLU
190
n
190
GLU
190
A
n
191
191
A
n
192
192
A
n
193
193
A
n
194
194
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLY
71
A
O
GLY
71
A
N
ALA
37
A
N
ALA
37
A
N
ARG
34
A
N
ARG
34
A
O
HIS
114
A
O
HIS
114
A
O
ARG
121
A
O
ARG
121
A
N
THR
99
A
N
THR
99
A
O
GLY
71
A
O
GLY
71
A
N
ALA
37
A
N
ALA
37
A
N
ARG
34
A
N
ARG
34
A
O
HIS
114
A
O
HIS
114
A
O
VAL
115
A
O
VAL
115
A
N
VAL
107
A
N
VAL
107
A
O
ALA
67
A
O
ALA
67
A
N
THR
53
A
N
THR
53
A
N
VAL
54
A
N
VAL
54
A
O
ALA
137
A
O
ALA
137
A
N
GLU
155
A
N
GLU
155
A
O
LEU
167
A
O
LEU
167
A
N
TRP
172
A
N
TRP
172
A
O
LEU
175
A
O
LEU
175
1
A
MET
1
A
MET
1
1
Y
1
A
THR
2
A
THR
2
1
Y
1
A
ALA
3
A
ALA
3
1
Y
1
A
PRO
4
A
PRO
4
1
Y
1
A
ARG
23
A
ARG
23
1
Y
1
A
THR
24
A
THR
24
1
Y
1
A
ARG
25
A
ARG
25
1
Y
1
A
THR
26
A
THR
26
1
Y
1
A
ALA
27
A
ALA
27
1
Y
1
A
LEU
28
A
LEU
28
1
Y
1
A
GLU
29
A
GLU
29
1
Y
1
A
LEU
30
A
LEU
30
1
Y
1
A
PRO
31
A
PRO
31
1
Y
1
A
HIS
32
A
HIS
32
1
Y
1
A
SER
57
A
SER
57
1
Y
1
A
GLU
58
A
GLU
58
1
Y
1
A
LEU
59
A
LEU
59
1
Y
1
A
PRO
60
A
PRO
60
1
Y
1
A
THR
61
A
THR
61
1
Y
1
A
HIS
62
A
HIS
62
1
Y
1
A
GLN
191
A
GLN
191
1
Y
1
A
GLY
192
A
GLY
192
1
Y
1
A
PRO
193
A
PRO
193
1
Y
1
A
GLY
194
A
GLY
194
1
Y
1
A
A
O
O
HOH
HOH
286
286
1.49
1_555
2_755
1
A
ASP
47
-114.44
79.46
1
A
PRO
151
-69.71
80.53
0.279
0.2
2.09
30
10529
10529
random
1
0
MIR
Engh & Huber
2.09
30
96
1415
0
0
1319
0.006
1.37
2.09
30.0
1NQY
10529
0
0
0.061
1
8.9
99.2
data reduction
DENZO
data scaling
SCALEPACK
refinement
CNS
phasing
CNS
The structure of a CoA pyrophosphatase from D. Radiodurans
1
N
N
2
N
N
A
ASP
6
A
ASP
6
HELX_P
A
ALA
13
A
ALA
13
1
1
8
A
THR
78
A
THR
78
HELX_P
A
ALA
92
A
ALA
92
1
2
15
A
ASP
94
A
ASP
94
HELX_P
A
VAL
98
A
VAL
98
5
3
5
A
ALA
123
A
ALA
123
HELX_P
A
ASP
128
A
ASP
128
5
4
6
A
THR
143
A
THR
143
HELX_P
A
VAL
150
A
VAL
150
1
5
8
A
GLY
179
A
GLY
179
HELX_P
A
GLU
190
A
GLU
190
1
6
12
HYDROLASE
Nudix, pyrophosphatase, Dr1184, CoA, HYDROLASE
Q9RV46_DEIRA
UNP
1
1
Q9RV46
MTAPHDPLDDIQADPWALWLSGRTRTALELPHYRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPT
QAALREAQEEVALDPAAVTLLGELDDVFTPVGFHVTPVLGRIAPEALDTLRVTPEVAQIITPTLAELRAVPLVRERRTLP
DGTEVPLYRYPWRGLDIWGMTARVLHDLLEQGPG
1
194
1NQY
1
194
Q9RV46
A
1
1
194
4
4
3
3
anti-parallel
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLY
70
A
GLY
70
A
SER
72
A
SER
72
A
ARG
34
A
ARG
34
A
THR
43
A
THR
43
A
PHE
113
A
PHE
113
A
ILE
122
A
ILE
122
A
THR
99
A
THR
99
A
GLU
103
A
GLU
103
A
GLY
70
A
GLY
70
A
SER
72
A
SER
72
A
ARG
34
A
ARG
34
A
THR
43
A
THR
43
A
PHE
113
A
PHE
113
A
ILE
122
A
ILE
122
A
VAL
107
A
VAL
107
A
THR
109
A
THR
109
A
ILE
66
A
ILE
66
A
ALA
67
A
ALA
67
A
LEU
52
A
LEU
52
A
ARG
55
A
ARG
55
A
VAL
136
A
VAL
136
A
ILE
140
A
ILE
140
A
VAL
153
A
VAL
153
A
THR
158
A
THR
158
A
GLU
164
A
GLU
164
A
TRP
172
A
TRP
172
A
LEU
175
A
LEU
175
A
TRP
178
A
TRP
178
18
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