0.012085
0.006977
0.000000
0.000000
0.013955
0.000000
0.000000
0.000000
0.016856
0.00000
0.00000
0.00000
Musayev, F.N.
di Salvo, M.L.
Ko, T.P.
Schirch, V.
Safo, M.K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
82.747
82.747
59.327
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C2 H6 O S
78.133
BETA-MERCAPTOETHANOL
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C17 H21 N4 O9 P
456.344
FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C8 H10 N O6 P
247.142
PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate
non-polymer
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
C
N
75
N
C
N
76
N
O
N
77
N
S
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
N
N
85
R
C
N
86
N
C
N
87
N
O
N
88
N
C
N
89
N
S
N
90
N
O
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
N
N
99
N
C
N
100
N
O
N
101
N
N
N
102
N
C
N
103
N
O
N
104
N
C
N
105
N
N
Y
106
N
C
Y
107
N
C
Y
108
N
C
N
109
N
C
Y
110
N
C
N
111
N
C
Y
112
N
C
Y
113
N
C
N
114
N
N
N
115
N
C
N
116
N
C
N
117
S
C
N
118
N
O
N
119
S
C
N
120
N
O
N
121
R
C
N
122
N
O
N
123
N
C
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
N
N
151
S
C
N
152
N
C
N
153
N
O
N
154
N
C
N
155
N
C
N
156
N
C
N
157
N
O
N
158
N
N
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
N
N
171
S
C
N
172
N
C
N
173
N
O
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
O
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
N
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
N
N
200
S
C
N
201
N
C
N
202
N
O
N
203
N
C
Y
204
N
C
Y
205
N
N
Y
206
N
C
Y
207
N
C
Y
208
N
N
N
209
N
O
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
O
N
221
N
H
N
222
N
H
N
223
N
N
N
224
S
C
N
225
N
C
N
226
N
O
N
227
S
C
N
228
N
C
N
229
N
C
N
230
N
C
N
231
N
O
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
N
N
246
S
C
N
247
N
C
N
248
N
O
N
249
N
C
N
250
N
C
N
251
N
C
N
252
N
C
N
253
N
O
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
N
N
268
S
C
N
269
N
C
N
270
N
O
N
271
N
C
N
272
N
C
N
273
N
C
N
274
N
C
N
275
N
N
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
N
N
293
S
C
N
294
N
C
N
295
N
O
N
296
N
C
N
297
N
C
N
298
N
S
N
299
N
C
N
300
N
O
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
Y
322
N
C
N
323
N
O
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
Y
335
N
N
Y
336
N
C
N
337
N
C
Y
338
N
C
N
339
N
O
Y
340
N
C
N
341
N
C
N
342
N
O
Y
343
N
C
Y
344
N
C
N
345
N
C
N
346
N
O
N
347
N
P
N
348
N
O
N
349
N
O
N
350
N
O
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
P
N
362
N
O
N
363
N
O
N
364
N
O
N
365
N
O
N
366
N
N
N
367
S
C
N
368
N
C
N
369
N
O
N
370
N
C
N
371
N
C
N
372
N
C
N
373
N
O
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
N
388
N
O
N
389
N
O
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
R
C
N
402
N
O
N
403
N
C
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
N
N
415
S
C
N
416
N
C
N
417
N
O
N
418
N
C
Y
419
N
C
Y
420
N
C
Y
421
N
C
Y
422
N
N
Y
423
N
C
Y
424
N
C
Y
425
N
C
Y
426
N
C
Y
427
N
C
N
428
N
O
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
N
N
442
S
C
N
443
N
C
N
444
N
O
N
445
N
C
Y
446
N
C
Y
447
N
C
Y
448
N
C
Y
449
N
C
Y
450
N
C
Y
451
N
C
N
452
N
O
N
453
N
O
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
N
N
466
S
C
N
467
N
C
N
468
N
O
N
469
N
C
N
470
N
C
N
471
N
C
N
472
N
O
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
doub
N
94
N
doub
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
Y
103
N
doub
Y
104
N
sing
Y
105
N
sing
N
106
N
sing
N
107
N
sing
Y
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
Y
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
Y
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
Y
203
N
sing
Y
204
N
doub
Y
205
N
doub
N
206
N
sing
Y
207
N
sing
N
208
N
sing
Y
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
doub
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
doub
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
Y
311
N
doub
Y
312
N
sing
Y
313
N
sing
N
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
doub
N
318
N
sing
Y
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
Y
323
N
doub
Y
324
N
sing
N
325
N
sing
Y
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
Y
331
N
doub
N
332
N
sing
N
333
N
sing
Y
334
N
sing
N
335
N
doub
N
336
N
sing
Y
337
N
doub
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
doub
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
doub
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
doub
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
doub
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
Y
410
N
doub
Y
411
N
sing
Y
412
N
sing
N
413
N
sing
Y
414
N
doub
Y
415
N
sing
Y
416
N
sing
N
417
N
sing
Y
418
N
sing
Y
419
N
doub
N
420
N
sing
Y
421
N
doub
N
422
N
sing
Y
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
doub
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
Y
438
N
doub
Y
439
N
sing
Y
440
N
sing
N
441
N
sing
Y
442
N
doub
N
443
N
sing
Y
444
N
doub
N
445
N
sing
Y
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
doub
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
US
Protein Sci.
PRCIEI
0795
0961-8368
12
1455
1463
10.1110/ps.0356203
12824491
Structure and properties of recombinant human pyridoxine 5'-phosphate oxidase.
2003
10.2210/pdb1nrg/pdb
pdb_00001nrg
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirrors
IMAGE PLATE
2002-10-16
RIGAKU RAXIS II
MSC Confocal Mirrors
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
30029.025
pyridoxine 5'-phosphate oxidase
1
man
polymer
94.971
PHOSPHATE ION
1
syn
non-polymer
456.344
FLAVIN MONONUCLEOTIDE
1
syn
non-polymer
247.142
PYRIDOXAL-5'-PHOSPHATE
1
syn
non-polymer
78.133
BETA-MERCAPTOETHANOL
1
syn
non-polymer
18.015
water
196
nat
water
no
no
MTCWLRGVTATFGRPAEWPGYLSHLCGRSAAMDLGPMRKSYRGDREAFEETHLTSLDPVKQFAAWFEEAVQCPDIGEANA
MCLATCTRDGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHS
RPKSSQIGAVVSHQSSVIPDREYLRKKNEELEQLYQDQEVPKPKSWGGYVLYPQVMEFWQGQTNRLHDRIVFRRGLPTGD
SPLGPMTHRGEEDWLYERLAP
MTCWLRGVTATFGRPAEWPGYLSHLCGRSAAMDLGPMRKSYRGDREAFEETHLTSLDPVKQFAAWFEEAVQCPDIGEANA
MCLATCTRDGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHS
RPKSSQIGAVVSHQSSVIPDREYLRKKNEELEQLYQDQEVPKPKSWGGYVLYPQVMEFWQGQTNRLHDRIVFRRGLPTGD
SPLGPMTHRGEEDWLYERLAP
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
Human
9606
Homo sapiens
562
Escherichia coli
HMS174
plasmid
pET28
1
2.10
40.86
VAPOR DIFFUSION, HANGING DROP
7.5
potassium/sodium tartarate, potassium phosphate, 2-mercaptoethanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2003-02-11
1
1
2008-04-29
1
2
2011-07-13
1
3
2017-10-11
1
4
2023-08-16
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2003-01-24
REL
REL
PO4
PHOSPHATE ION
FMN
FLAVIN MONONUCLEOTIDE
PLP
PYRIDOXAL-5'-PHOSPHATE
BME
BETA-MERCAPTOETHANOL
HOH
water
1G79
E. coli PNPOx structure, PDB code 1G79
PDB
experimental model
PO4
340
2
PO4
PO4
340
A
FMN
300
3
FMN
FMN
300
A
PLP
320
4
PLP
PLP
320
A
SEO
360
5
BME
BME
360
A
HOH
401
6
HOH
HOH
401
A
HOH
402
6
HOH
HOH
402
A
HOH
403
6
HOH
HOH
403
A
HOH
404
6
HOH
HOH
404
A
HOH
405
6
HOH
HOH
405
A
HOH
406
6
HOH
HOH
406
A
HOH
407
6
HOH
HOH
407
A
HOH
408
6
HOH
HOH
408
A
HOH
409
6
HOH
HOH
409
A
HOH
410
6
HOH
HOH
410
A
HOH
411
6
HOH
HOH
411
A
HOH
412
6
HOH
HOH
412
A
HOH
413
6
HOH
HOH
413
A
HOH
414
6
HOH
HOH
414
A
HOH
415
6
HOH
HOH
415
A
HOH
416
6
HOH
HOH
416
A
HOH
417
6
HOH
HOH
417
A
HOH
418
6
HOH
HOH
418
A
HOH
419
6
HOH
HOH
419
A
HOH
420
6
HOH
HOH
420
A
HOH
421
6
HOH
HOH
421
A
HOH
422
6
HOH
HOH
422
A
HOH
423
6
HOH
HOH
423
A
HOH
424
6
HOH
HOH
424
A
HOH
425
6
HOH
HOH
425
A
HOH
426
6
HOH
HOH
426
A
HOH
427
6
HOH
HOH
427
A
HOH
428
6
HOH
HOH
428
A
HOH
429
6
HOH
HOH
429
A
HOH
430
6
HOH
HOH
430
A
HOH
431
6
HOH
HOH
431
A
HOH
432
6
HOH
HOH
432
A
HOH
433
6
HOH
HOH
433
A
HOH
434
6
HOH
HOH
434
A
HOH
435
6
HOH
HOH
435
A
HOH
436
6
HOH
HOH
436
A
HOH
437
6
HOH
HOH
437
A
HOH
438
6
HOH
HOH
438
A
HOH
439
6
HOH
HOH
439
A
HOH
440
6
HOH
HOH
440
A
HOH
441
6
HOH
HOH
441
A
HOH
442
6
HOH
HOH
442
A
HOH
443
6
HOH
HOH
443
A
HOH
444
6
HOH
HOH
444
A
HOH
445
6
HOH
HOH
445
A
HOH
446
6
HOH
HOH
446
A
HOH
447
6
HOH
HOH
447
A
HOH
448
6
HOH
HOH
448
A
HOH
449
6
HOH
HOH
449
A
HOH
450
6
HOH
HOH
450
A
HOH
451
6
HOH
HOH
451
A
HOH
452
6
HOH
HOH
452
A
HOH
453
6
HOH
HOH
453
A
HOH
454
6
HOH
HOH
454
A
HOH
456
6
HOH
HOH
456
A
HOH
457
6
HOH
HOH
457
A
HOH
458
6
HOH
HOH
458
A
HOH
459
6
HOH
HOH
459
A
HOH
460
6
HOH
HOH
460
A
HOH
461
6
HOH
HOH
461
A
HOH
462
6
HOH
HOH
462
A
HOH
463
6
HOH
HOH
463
A
HOH
464
6
HOH
HOH
464
A
HOH
465
6
HOH
HOH
465
A
HOH
466
6
HOH
HOH
466
A
HOH
467
6
HOH
HOH
467
A
HOH
468
6
HOH
HOH
468
A
HOH
469
6
HOH
HOH
469
A
HOH
470
6
HOH
HOH
470
A
HOH
471
6
HOH
HOH
471
A
HOH
472
6
HOH
HOH
472
A
HOH
473
6
HOH
HOH
473
A
HOH
474
6
HOH
HOH
474
A
HOH
475
6
HOH
HOH
475
A
HOH
476
6
HOH
HOH
476
A
HOH
477
6
HOH
HOH
477
A
HOH
478
6
HOH
HOH
478
A
HOH
479
6
HOH
HOH
479
A
HOH
480
6
HOH
HOH
480
A
HOH
481
6
HOH
HOH
481
A
HOH
482
6
HOH
HOH
482
A
HOH
483
6
HOH
HOH
483
A
HOH
484
6
HOH
HOH
484
A
HOH
485
6
HOH
HOH
485
A
HOH
486
6
HOH
HOH
486
A
HOH
487
6
HOH
HOH
487
A
HOH
488
6
HOH
HOH
488
A
HOH
489
6
HOH
HOH
489
A
HOH
490
6
HOH
HOH
490
A
HOH
491
6
HOH
HOH
491
A
HOH
492
6
HOH
HOH
492
A
HOH
493
6
HOH
HOH
493
A
HOH
494
6
HOH
HOH
494
A
HOH
495
6
HOH
HOH
495
A
HOH
496
6
HOH
HOH
496
A
HOH
497
6
HOH
HOH
497
A
HOH
498
6
HOH
HOH
498
A
HOH
499
6
HOH
HOH
499
A
HOH
500
6
HOH
HOH
500
A
HOH
501
6
HOH
HOH
501
A
HOH
502
6
HOH
HOH
502
A
HOH
503
6
HOH
HOH
503
A
HOH
504
6
HOH
HOH
504
A
HOH
505
6
HOH
HOH
505
A
HOH
506
6
HOH
HOH
506
A
HOH
507
6
HOH
HOH
507
A
HOH
508
6
HOH
HOH
508
A
HOH
509
6
HOH
HOH
509
A
HOH
510
6
HOH
HOH
510
A
HOH
511
6
HOH
HOH
511
A
HOH
512
6
HOH
HOH
512
A
HOH
513
6
HOH
HOH
513
A
HOH
514
6
HOH
HOH
514
A
HOH
515
6
HOH
HOH
515
A
HOH
516
6
HOH
HOH
516
A
HOH
517
6
HOH
HOH
517
A
HOH
518
6
HOH
HOH
518
A
HOH
519
6
HOH
HOH
519
A
HOH
520
6
HOH
HOH
520
A
HOH
521
6
HOH
HOH
521
A
HOH
522
6
HOH
HOH
522
A
HOH
523
6
HOH
HOH
523
A
HOH
524
6
HOH
HOH
524
A
HOH
525
6
HOH
HOH
525
A
HOH
526
6
HOH
HOH
526
A
HOH
527
6
HOH
HOH
527
A
HOH
528
6
HOH
HOH
528
A
HOH
529
6
HOH
HOH
529
A
HOH
530
6
HOH
HOH
530
A
HOH
531
6
HOH
HOH
531
A
HOH
532
6
HOH
HOH
532
A
HOH
533
6
HOH
HOH
533
A
HOH
534
6
HOH
HOH
534
A
HOH
535
6
HOH
HOH
535
A
HOH
536
6
HOH
HOH
536
A
HOH
537
6
HOH
HOH
537
A
HOH
538
6
HOH
HOH
538
A
HOH
539
6
HOH
HOH
539
A
HOH
540
6
HOH
HOH
540
A
HOH
541
6
HOH
HOH
541
A
HOH
542
6
HOH
HOH
542
A
HOH
543
6
HOH
HOH
543
A
HOH
544
6
HOH
HOH
544
A
HOH
545
6
HOH
HOH
545
A
HOH
546
6
HOH
HOH
546
A
HOH
547
6
HOH
HOH
547
A
HOH
548
6
HOH
HOH
548
A
HOH
549
6
HOH
HOH
549
A
HOH
550
6
HOH
HOH
550
A
HOH
551
6
HOH
HOH
551
A
HOH
552
6
HOH
HOH
552
A
HOH
553
6
HOH
HOH
553
A
HOH
554
6
HOH
HOH
554
A
HOH
555
6
HOH
HOH
555
A
HOH
556
6
HOH
HOH
556
A
HOH
557
6
HOH
HOH
557
A
HOH
558
6
HOH
HOH
558
A
HOH
559
6
HOH
HOH
559
A
HOH
560
6
HOH
HOH
560
A
HOH
561
6
HOH
HOH
561
A
HOH
562
6
HOH
HOH
562
A
HOH
563
6
HOH
HOH
563
A
HOH
564
6
HOH
HOH
564
A
HOH
565
6
HOH
HOH
565
A
HOH
566
6
HOH
HOH
566
A
HOH
567
6
HOH
HOH
567
A
HOH
568
6
HOH
HOH
568
A
HOH
569
6
HOH
HOH
569
A
HOH
570
6
HOH
HOH
570
A
HOH
571
6
HOH
HOH
571
A
HOH
572
6
HOH
HOH
572
A
HOH
573
6
HOH
HOH
573
A
HOH
574
6
HOH
HOH
574
A
HOH
575
6
HOH
HOH
575
A
HOH
576
6
HOH
HOH
576
A
HOH
577
6
HOH
HOH
577
A
HOH
578
6
HOH
HOH
578
A
HOH
579
6
HOH
HOH
579
A
HOH
580
6
HOH
HOH
580
A
HOH
581
6
HOH
HOH
581
A
HOH
582
6
HOH
HOH
582
A
HOH
583
6
HOH
HOH
583
A
HOH
584
6
HOH
HOH
584
A
HOH
585
6
HOH
HOH
585
A
HOH
586
6
HOH
HOH
586
A
HOH
587
6
HOH
HOH
587
A
HOH
588
6
HOH
HOH
588
A
HOH
589
6
HOH
HOH
589
A
HOH
590
6
HOH
HOH
590
A
HOH
591
6
HOH
HOH
591
A
HOH
592
6
HOH
HOH
592
A
HOH
593
6
HOH
HOH
593
A
HOH
594
6
HOH
HOH
594
A
HOH
595
6
HOH
HOH
595
A
HOH
596
6
HOH
HOH
596
A
HOH
597
6
HOH
HOH
597
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
n
11
11
A
n
12
12
A
n
13
13
A
n
14
14
A
n
15
15
A
n
16
16
A
n
17
17
A
n
18
18
A
n
19
19
A
n
20
20
A
n
21
21
A
n
22
22
A
n
23
23
A
n
24
24
A
n
25
25
A
n
26
26
A
n
27
27
A
n
28
28
A
n
29
29
A
n
30
30
A
n
31
31
A
n
32
32
A
n
33
33
A
n
34
34
A
n
35
35
A
n
36
36
A
n
37
37
A
n
38
38
A
n
39
39
A
n
40
40
A
n
41
41
A
n
42
42
A
n
43
43
A
n
44
44
A
n
45
45
A
n
46
46
A
n
47
47
A
n
48
48
A
ALA
49
n
49
GLU
49
A
GLU
50
n
50
GLU
50
A
THR
51
n
51
THR
51
A
HIS
52
n
52
HIS
52
A
LEU
53
n
53
LEU
53
A
THR
54
n
54
THR
54
A
SER
55
n
55
SER
55
A
LEU
56
n
56
LEU
56
A
ASP
57
n
57
ASP
57
A
PRO
58
n
58
PRO
58
A
VAL
59
n
59
VAL
59
A
LYS
60
n
60
LYS
60
A
GLN
61
n
61
GLN
61
A
PHE
62
n
62
PHE
62
A
ALA
63
n
63
ALA
63
A
ALA
64
n
64
ALA
64
A
TRP
65
n
65
TRP
65
A
PHE
66
n
66
PHE
66
A
GLU
67
n
67
GLU
67
A
GLU
68
n
68
GLU
68
A
ALA
69
n
69
ALA
69
A
VAL
70
n
70
VAL
70
A
GLN
71
n
71
GLN
71
A
CYS
72
n
72
CYS
72
A
PRO
73
n
73
PRO
73
A
ASP
74
n
74
ASP
74
A
ILE
75
n
75
ILE
75
A
GLY
76
n
76
GLY
76
A
GLU
77
n
77
GLU
77
A
ALA
78
n
78
ALA
78
A
ASN
79
n
79
ASN
79
A
ALA
80
n
80
ALA
80
A
MET
81
n
81
MET
81
A
CYS
82
n
82
CYS
82
A
LEU
83
n
83
LEU
83
A
ALA
84
n
84
ALA
84
A
THR
85
n
85
THR
85
A
CYS
86
n
86
CYS
86
A
THR
87
n
87
THR
87
A
ARG
88
n
88
ARG
88
A
ASP
89
n
89
ASP
89
A
GLY
90
n
90
GLY
90
A
LYS
91
n
91
LYS
91
A
PRO
92
n
92
PRO
92
A
SER
93
n
93
SER
93
A
ALA
94
n
94
ALA
94
A
ARG
95
n
95
ARG
95
A
MET
96
n
96
MET
96
A
LEU
97
n
97
LEU
97
A
LEU
98
n
98
LEU
98
A
LEU
99
n
99
LEU
99
A
LYS
100
n
100
LYS
100
A
GLY
101
n
101
GLY
101
A
PHE
102
n
102
PHE
102
A
GLY
103
n
103
GLY
103
A
LYS
104
n
104
LYS
104
A
ASP
105
n
105
ASP
105
A
GLY
106
n
106
GLY
106
A
PHE
107
n
107
PHE
107
A
ARG
108
n
108
ARG
108
A
PHE
109
n
109
PHE
109
A
PHE
110
n
110
PHE
110
A
THR
111
n
111
THR
111
A
ASN
112
n
112
ASN
112
A
PHE
113
n
113
PHE
113
A
GLU
114
n
114
GLU
114
A
SER
115
n
115
SER
115
A
ARG
116
n
116
ARG
116
A
LYS
117
n
117
LYS
117
A
GLY
118
n
118
GLY
118
A
LYS
119
n
119
LYS
119
A
GLU
120
n
120
GLU
120
A
LEU
121
n
121
LEU
121
A
ASP
122
n
122
ASP
122
A
SER
123
n
123
SER
123
A
ASN
124
n
124
ASN
124
A
PRO
125
n
125
PRO
125
A
PHE
126
n
126
PHE
126
A
ALA
127
n
127
ALA
127
A
SER
128
n
128
SER
128
A
LEU
129
n
129
LEU
129
A
VAL
130
n
130
VAL
130
A
PHE
131
n
131
PHE
131
A
TYR
132
n
132
TYR
132
A
TRP
133
n
133
TRP
133
A
GLU
134
n
134
GLU
134
A
PRO
135
n
135
PRO
135
A
LEU
136
n
136
LEU
136
A
ASN
137
n
137
ASN
137
A
ARG
138
n
138
ARG
138
A
GLN
139
n
139
GLN
139
A
VAL
140
n
140
VAL
140
A
ARG
141
n
141
ARG
141
A
VAL
142
n
142
VAL
142
A
GLU
143
n
143
GLU
143
A
GLY
144
n
144
GLY
144
A
PRO
145
n
145
PRO
145
A
VAL
146
n
146
VAL
146
A
LYS
147
n
147
LYS
147
A
LYS
148
n
148
LYS
148
A
LEU
149
n
149
LEU
149
A
PRO
150
n
150
PRO
150
A
GLU
151
n
151
GLU
151
A
GLU
152
n
152
GLU
152
A
GLU
153
n
153
GLU
153
A
ALA
154
n
154
ALA
154
A
GLU
155
n
155
GLU
155
A
CYS
156
n
156
CYS
156
A
TYR
157
n
157
TYR
157
A
PHE
158
n
158
PHE
158
A
HIS
159
n
159
HIS
159
A
SER
160
n
160
SER
160
A
ARG
161
n
161
ARG
161
A
PRO
162
n
162
PRO
162
A
LYS
163
n
163
LYS
163
A
SER
164
n
164
SER
164
A
SER
165
n
165
SER
165
A
GLN
166
n
166
GLN
166
A
ILE
167
n
167
ILE
167
A
GLY
168
n
168
GLY
168
A
ALA
169
n
169
ALA
169
A
VAL
170
n
170
VAL
170
A
VAL
171
n
171
VAL
171
A
SER
172
n
172
SER
172
A
HIS
173
n
173
HIS
173
A
GLN
174
n
174
GLN
174
A
SER
175
n
175
SER
175
A
SER
176
n
176
SER
176
A
VAL
177
n
177
VAL
177
A
ILE
178
n
178
ILE
178
A
PRO
179
n
179
PRO
179
A
ASP
180
n
180
ASP
180
A
ARG
181
n
181
ARG
181
A
GLU
182
n
182
GLU
182
A
TYR
183
n
183
TYR
183
A
LEU
184
n
184
LEU
184
A
ARG
185
n
185
ARG
185
A
LYS
186
n
186
LYS
186
A
LYS
187
n
187
LYS
187
A
ASN
188
n
188
ASN
188
A
GLU
189
n
189
GLU
189
A
GLU
190
n
190
GLU
190
A
LEU
191
n
191
LEU
191
A
GLU
192
n
192
GLU
192
A
GLN
193
n
193
GLN
193
A
LEU
194
n
194
LEU
194
A
TYR
195
n
195
TYR
195
A
GLN
196
n
196
GLN
196
A
ASP
197
n
197
ASP
197
A
GLN
198
n
198
GLN
198
A
GLU
199
n
199
GLU
199
A
VAL
200
n
200
VAL
200
A
PRO
201
n
201
PRO
201
A
LYS
202
n
202
LYS
202
A
PRO
203
n
203
PRO
203
A
LYS
204
n
204
LYS
204
A
SER
205
n
205
SER
205
A
TRP
206
n
206
TRP
206
A
GLY
207
n
207
GLY
207
A
GLY
208
n
208
GLY
208
A
TYR
209
n
209
TYR
209
A
VAL
210
n
210
VAL
210
A
LEU
211
n
211
LEU
211
A
TYR
212
n
212
TYR
212
A
PRO
213
n
213
PRO
213
A
GLN
214
n
214
GLN
214
A
VAL
215
n
215
VAL
215
A
MET
216
n
216
MET
216
A
GLU
217
n
217
GLU
217
A
PHE
218
n
218
PHE
218
A
TRP
219
n
219
TRP
219
A
GLN
220
n
220
GLN
220
A
GLY
221
n
221
GLY
221
A
GLN
222
n
222
GLN
222
A
THR
223
n
223
THR
223
A
ASN
224
n
224
ASN
224
A
ARG
225
n
225
ARG
225
A
LEU
226
n
226
LEU
226
A
HIS
227
n
227
HIS
227
A
ASP
228
n
228
ASP
228
A
ARG
229
n
229
ARG
229
A
ILE
230
n
230
ILE
230
A
VAL
231
n
231
VAL
231
A
PHE
232
n
232
PHE
232
A
ARG
233
n
233
ARG
233
A
ARG
234
n
234
ARG
234
A
GLY
235
n
235
GLY
235
A
LEU
236
n
236
LEU
236
A
PRO
237
n
237
PRO
237
A
THR
238
n
238
THR
238
A
GLY
239
n
239
GLY
239
A
ASP
240
n
240
ASP
240
A
SER
241
n
241
SER
241
A
PRO
242
n
242
PRO
242
A
LEU
243
n
243
LEU
243
A
GLY
244
n
244
GLY
244
A
PRO
245
n
245
PRO
245
A
MET
246
n
246
MET
246
A
THR
247
n
247
THR
247
A
HIS
248
n
248
HIS
248
A
ARG
249
n
249
ARG
249
A
GLY
250
n
250
GLY
250
A
GLU
251
n
251
GLU
251
A
GLU
252
n
252
GLU
252
A
ASP
253
n
253
ASP
253
A
TRP
254
n
254
TRP
254
A
LEU
255
n
255
LEU
255
A
TYR
256
n
256
TYR
256
A
GLU
257
n
257
GLU
257
A
ARG
258
n
258
ARG
258
A
LEU
259
n
259
LEU
259
A
ALA
260
n
260
ALA
260
A
PRO
261
n
261
PRO
261
A
author_and_software_defined_assembly
PISA,PQS
2
dimeric
8750
-51
19270
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
5_555
x-y,-y,-z+2/3
crystal symmetry operation
0.0000000000
0.0000000000
39.5513333333
A
O
ARG
95
A
O
ARG
95
A
N
LEU
83
A
N
LEU
83
A
N
ALA
84
A
N
ALA
84
A
O
SER
128
A
O
SER
128
A
N
LEU
129
A
N
LEU
129
A
O
VAL
142
A
O
VAL
142
A
N
LYS
147
A
N
LYS
147
A
O
VAL
210
A
O
VAL
210
A
O
LEU
211
A
O
LEU
211
A
N
PHE
107
A
N
PHE
107
A
O
GLY
106
A
O
GLY
106
A
N
GLY
103
A
N
GLY
103
A
O
ARG
95
A
O
ARG
95
A
N
LEU
83
A
N
LEU
83
A
N
ALA
84
A
N
ALA
84
A
O
SER
128
A
O
SER
128
A
N
LEU
129
A
N
LEU
129
A
O
VAL
142
A
O
VAL
142
A
N
GLN
139
A
N
GLN
139
A
O
TRP
219
A
O
TRP
219
A
N
MET
216
A
N
MET
216
A
O
PHE
232
A
O
PHE
232
A
N
ARG
233
A
N
ARG
233
A
O
LEU
255
A
O
LEU
255
A
O
TYR
256
A
O
TYR
256
A
N
HIS
248
A
N
HIS
248
1
A
CG
GLU
49
A
CG
GLU
49
1
Y
1
A
CD
GLU
49
A
CD
GLU
49
1
Y
1
A
OE1
GLU
49
A
OE1
GLU
49
1
Y
1
A
OE2
GLU
49
A
OE2
GLU
49
1
Y
1
A
MET
1
A
MET
1
1
Y
1
A
THR
2
A
THR
2
1
Y
1
A
CYS
3
A
CYS
3
1
Y
1
A
TRP
4
A
TRP
4
1
Y
1
A
LEU
5
A
LEU
5
1
Y
1
A
ARG
6
A
ARG
6
1
Y
1
A
GLY
7
A
GLY
7
1
Y
1
A
VAL
8
A
VAL
8
1
Y
1
A
THR
9
A
THR
9
1
Y
1
A
ALA
10
A
ALA
10
1
Y
1
A
THR
11
A
THR
11
1
Y
1
A
PHE
12
A
PHE
12
1
Y
1
A
GLY
13
A
GLY
13
1
Y
1
A
ARG
14
A
ARG
14
1
Y
1
A
PRO
15
A
PRO
15
1
Y
1
A
ALA
16
A
ALA
16
1
Y
1
A
GLU
17
A
GLU
17
1
Y
1
A
TRP
18
A
TRP
18
1
Y
1
A
PRO
19
A
PRO
19
1
Y
1
A
GLY
20
A
GLY
20
1
Y
1
A
TYR
21
A
TYR
21
1
Y
1
A
LEU
22
A
LEU
22
1
Y
1
A
SER
23
A
SER
23
1
Y
1
A
HIS
24
A
HIS
24
1
Y
1
A
LEU
25
A
LEU
25
1
Y
1
A
CYS
26
A
CYS
26
1
Y
1
A
GLY
27
A
GLY
27
1
Y
1
A
ARG
28
A
ARG
28
1
Y
1
A
SER
29
A
SER
29
1
Y
1
A
ALA
30
A
ALA
30
1
Y
1
A
ALA
31
A
ALA
31
1
Y
1
A
MET
32
A
MET
32
1
Y
1
A
ASP
33
A
ASP
33
1
Y
1
A
LEU
34
A
LEU
34
1
Y
1
A
GLY
35
A
GLY
35
1
Y
1
A
PRO
36
A
PRO
36
1
Y
1
A
MET
37
A
MET
37
1
Y
1
A
ARG
38
A
ARG
38
1
Y
1
A
LYS
39
A
LYS
39
1
Y
1
A
SER
40
A
SER
40
1
Y
1
A
TYR
41
A
TYR
41
1
Y
1
A
ARG
42
A
ARG
42
1
Y
1
A
GLY
43
A
GLY
43
1
Y
1
A
ASP
44
A
ASP
44
1
Y
1
A
ARG
45
A
ARG
45
1
Y
1
A
GLU
46
A
GLU
46
1
Y
1
A
ALA
47
A
ALA
47
1
Y
1
A
PHE
48
A
PHE
48
1
Y
1
A
A
O
O
HOH
HOH
404
405
2.16
1
A
TYR
157
0.074
SIDE CHAIN
1
16.58
2.70
111.00
127.58
A
A
A
N
CA
C
GLU
GLU
GLU
50
50
50
N
1
A
GLU
50
22.39
121.42
1
A
ASN
124
-157.76
77.06
1
A
PRO
125
-61.21
61.04
1
A
GLN
174
-39.25
119.00
1
A
SER
175
82.56
0.66
1
A
ASP
197
58.75
2.51
1
A
ARG
225
82.39
0.42
1
A
PRO
237
-76.89
39.30
1
A
ASP
240
163.43
77.33
1
A
PRO
242
-26.42
128.00
1
A
LEU
243
-104.41
-157.36
1
A
GLU
252
56.58
-134.43
PROTEIN_REP.PARAM
PROTEIN.TOP
PHOSPHATE.PAR
WATER.TOP
FMN.PAR
FMN.TOP
PLP.PAR
PROTEIN.LINK
SEO2.PAR
PLP.TOP
44.3
-1.49
1.73
0.00
-1.49
0.00
2.97
0.253
0.009
0.192
0.201
0.192
1.95
45.70
856
17477
16953
5.0
97.0
RANDOM
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
E. coli PNPOx structure, PDB code 1G79
Engh & Huber
FLAT MODEL
66.1042
0.35217
0.32
0.23
5.00
0.32
0.31
1.95
45.70
196
1984
56
0
1732
0.014
1.7
24.1
1.17
5.16
1.50
6.06
2.00
7.33
2.00
9.22
2.50
0.336
0.027
0.297
2.07
156
2634
2790
6
5.6
96.7
23.4
1.95
71.7
1NRG
17885
16966
0
0
0.0654
1
14.7
5.59
94.9
0.366
1.95
2.00
1.63
1226
1
3.87
95.8
refinement
CNS
1.0
data reduction
bioteX
data scaling
bioteX
phasing
AMoRE
Structure and Properties of Recombinant Human Pyridoxine-5'-Phosphate Oxidase
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
The biological assembly is a dimer, which can be constructed from chain A and its symmetry-related partner generated by X-Y, -Y, 2/3-Z
A
ASP
57
A
ASP
57
HELX_P
A
CYS
72
A
CYS
72
1
1
16
A
SER
115
A
SER
115
HELX_P
A
ASN
124
A
ASN
124
1
2
10
A
GLU
134
A
GLU
134
HELX_P
A
LEU
136
A
LEU
136
5
3
3
A
PRO
150
A
PRO
150
HELX_P
A
ARG
161
A
ARG
161
1
4
12
A
PRO
162
A
PRO
162
HELX_P
A
SER
172
A
SER
172
1
5
11
A
ASP
180
A
ASP
180
HELX_P
A
TYR
195
A
TYR
195
1
6
16
covale
2.037
none
A
CYS
72
A
SG
CYS
72
1_555
A
BME
360
E
S2
BME
1_555
OXIDOREDUCTASE
PLP, FMN, pyridoxine-5'-phosphate, oxidase, OXIDOREDUCTASE
PNPO_HUMAN
UNP
1
1
Q9NVS9
MTCWLRGVTATFGRPAEWPGYLSHLCGRSAAMDLGPMRKSYRGDREAFEETHLTSLDPVKQFAAWFEEAVQCPDIGEANA
MCLATCTRDGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHS
RPKSSQIGAVVSHQSSVIPDREYLRKKNEELEQLYQDQEVPKPKSWGGYVLYPQVMEFWQGQTNRLHDRIVFRRGLPTGD
SPLGPMTHRGEEDWLYERLAP
1
261
1NRG
1
261
Q9NVS9
A
1
1
261
7
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
PRO
92
A
PRO
92
A
LEU
98
A
LEU
98
A
ALA
80
A
ALA
80
A
CYS
86
A
CYS
86
A
PHE
126
A
PHE
126
A
TRP
133
A
TRP
133
A
ARG
138
A
ARG
138
A
LYS
148
A
LYS
148
A
TRP
206
A
TRP
206
A
LEU
211
A
LEU
211
A
GLY
106
A
GLY
106
A
ASN
112
A
ASN
112
A
PHE
102
A
PHE
102
A
GLY
103
A
GLY
103
A
PRO
92
A
PRO
92
A
LEU
98
A
LEU
98
A
ALA
80
A
ALA
80
A
CYS
86
A
CYS
86
A
PHE
126
A
PHE
126
A
TRP
133
A
TRP
133
A
ARG
138
A
ARG
138
A
LYS
148
A
LYS
148
A
VAL
215
A
VAL
215
A
GLN
220
A
GLN
220
A
ASP
228
A
ASP
228
A
ARG
234
A
ARG
234
A
TRP
254
A
TRP
254
A
ARG
258
A
ARG
258
A
HIS
248
A
HIS
248
A
ARG
249
A
ARG
249
BINDING SITE FOR RESIDUE PO4 A 340
A
PO4
340
Software
6
BINDING SITE FOR RESIDUE FMN A 300
A
FMN
300
Software
22
BINDING SITE FOR RESIDUE PLP A 320
A
PLP
320
Software
10
BINDING SITE FOR RESIDUE BME A 360
A
BME
360
Software
2
A
GLU
114
A
GLU
114
6
1_555
A
LYS
119
A
LYS
119
6
1_555
A
GLN
174
A
GLN
174
6
1_555
A
SER
175
A
SER
175
6
1_555
A
HOH
495
F
HOH
6
1_555
A
HOH
579
F
HOH
6
1_555
A
GLU
77
A
GLU
77
22
1_555
A
ARG
95
A
ARG
95
22
1_555
A
MET
96
A
MET
96
22
1_555
A
LEU
97
A
LEU
97
22
1_555
A
LEU
98
A
LEU
98
22
1_555
A
PHE
110
A
PHE
110
22
1_555
A
THR
111
A
THR
111
22
1_555
A
SER
115
A
SER
115
22
1_555
A
ARG
116
A
ARG
116
22
1_555
A
LYS
117
A
LYS
117
22
1_555
A
TYR
132
A
TYR
132
22
5_555
A
GLN
139
A
GLN
139
22
5_555
A
ARG
141
A
ARG
141
22
5_555
A
GLN
174
A
GLN
174
22
1_555
A
SER
175
A
SER
175
22
1_555
A
TRP
219
A
TRP
219
22
5_555
A
ARG
229
A
ARG
229
22
5_555
A
PLP
320
D
PLP
22
1_555
A
HOH
428
F
HOH
22
1_555
A
HOH
429
F
HOH
22
1_555
A
HOH
436
F
HOH
22
1_555
A
HOH
465
F
HOH
22
5_555
A
LEU
98
A
LEU
98
10
1_555
A
LYS
100
A
LYS
100
10
1_555
A
TYR
157
A
TYR
157
10
1_555
A
ARG
161
A
ARG
161
10
1_555
A
SER
165
A
SER
165
10
1_555
A
GLN
174
A
GLN
174
10
1_555
A
ARG
225
A
ARG
225
10
5_555
A
HIS
227
A
HIS
227
10
5_555
A
PRO
261
A
PRO
261
10
5_555
A
FMN
300
C
FMN
10
1_555
A
CYS
72
A
CYS
72
2
1_555
A
PRO
135
A
PRO
135
2
1_555
152
P 31 2 1