0.006623
0.003824
0.000000
0.000000
0.007647
0.000000
0.000000
0.000000
0.014706
0.00000
0.00000
0.00000
Teplyakov, A.
Obmolova, G.
Gilliland, G.L.
Structure 2 Function Project (S2F)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
151.000
151.000
68.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Bacteriol.
JOBAAY
0767
0021-9193
186
7134
7140
10.1128/JB.186.21.7134-7140.2004
15489424
Crystal structure of the YgfZ protein from Escherichia coli suggests a folate-dependent regulatory role in one-carbon metabolism.
2004
10.2210/pdb1nrk/pdb
pdb_00001nrk
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirror
CCD
2002-04-12
MARRESEARCH
Si(111)
MAD
M
x-ray
1
1.000
1.0
17-BM
APS
1.000
SYNCHROTRON
APS BEAMLINE 17-BM
36755.121
YGFZ Protein
1
man
polymer
96.063
SULFATE ION
2
syn
non-polymer
18.015
water
215
nat
water
Spot PR51
no
yes
GSH(MSE)AFTPFPPRQPTASARLPLTL(MSE)TLDDWALATITGADSEKY(MSE)QGQVTADVSQ(MSE)AEDQHLLAA
HCDAKGK(MSE)WSNLRLFRDGDGFAWIERRSVREPQLTELKKYAVFSKVTIAPDDERVLLGVAGFQARAALANLFSELP
SKEKQVVKEGATTLLWFEHPAERFLIVTDEATAN(MSE)LTDKLRGEAELNNSQQWLALNIEAGFPVIDAANSGQFIPQA
TNLQALGGISFKKGCYTGQE(MSE)VARAKFRGANKRALWLLAGSASRLPEAGEDLELK(MSE)GENWRRTGTVLAAVKL
EDGQVVVQVV(MSE)NND(MSE)EPDSIFRVRDDANTLHIEPLPYSLE
GSHMAFTPFPPRQPTASARLPLTLMTLDDWALATITGADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGKMWSNLRLFR
DGDGFAWIERRSVREPQLTELKKYAVFSKVTIAPDDERVLLGVAGFQARAALANLFSELPSKEKQVVKEGATTLLWFEHP
AERFLIVTDEATANMLTDKLRGEAELNNSQQWLALNIEAGFPVIDAANSGQFIPQATNLQALGGISFKKGCYTGQEMVAR
AKFRGANKRALWLLAGSASRLPEAGEDLELKMGENWRRTGTVLAAVKLEDGQVVVQVVMNNDMEPDSIFRVRDDANTLHI
EPLPYSLE
A
ygfZ
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
Escherichia coli
sample
YGFZ OR B2898
562
Escherichia coli
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
pET15b
1
5.79
78.59
VAPOR DIFFUSION, HANGING DROP
4.5
0.1M Na Acetate, 30% Ammonium Sulfate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
295
Structure 2 Function Project
S2F
database_2
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
2004-03-09
1
1
2008-04-29
1
2
2011-07-13
1
3
2022-12-21
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2003-01-24
REL
REL
SO4
SULFATE ION
HOH
water
SO4
400
2
SO4
SO4
400
A
SO4
401
2
SO4
SO4
401
A
HOH
1
3
HOH
HOH
402
A
HOH
2
3
HOH
HOH
403
A
HOH
3
3
HOH
HOH
404
A
HOH
4
3
HOH
HOH
405
A
HOH
5
3
HOH
HOH
406
A
HOH
6
3
HOH
HOH
407
A
HOH
7
3
HOH
HOH
408
A
HOH
8
3
HOH
HOH
409
A
HOH
9
3
HOH
HOH
410
A
HOH
10
3
HOH
HOH
411
A
HOH
11
3
HOH
HOH
412
A
HOH
12
3
HOH
HOH
413
A
HOH
13
3
HOH
HOH
414
A
HOH
14
3
HOH
HOH
415
A
HOH
15
3
HOH
HOH
416
A
HOH
16
3
HOH
HOH
417
A
HOH
17
3
HOH
HOH
418
A
HOH
18
3
HOH
HOH
419
A
HOH
19
3
HOH
HOH
420
A
HOH
20
3
HOH
HOH
421
A
HOH
21
3
HOH
HOH
422
A
HOH
22
3
HOH
HOH
423
A
HOH
23
3
HOH
HOH
424
A
HOH
24
3
HOH
HOH
425
A
HOH
25
3
HOH
HOH
426
A
HOH
26
3
HOH
HOH
427
A
HOH
27
3
HOH
HOH
428
A
HOH
28
3
HOH
HOH
429
A
HOH
29
3
HOH
HOH
430
A
HOH
30
3
HOH
HOH
431
A
HOH
31
3
HOH
HOH
432
A
HOH
32
3
HOH
HOH
433
A
HOH
33
3
HOH
HOH
434
A
HOH
34
3
HOH
HOH
435
A
HOH
35
3
HOH
HOH
436
A
HOH
36
3
HOH
HOH
437
A
HOH
37
3
HOH
HOH
438
A
HOH
38
3
HOH
HOH
439
A
HOH
39
3
HOH
HOH
440
A
HOH
40
3
HOH
HOH
441
A
HOH
41
3
HOH
HOH
442
A
HOH
42
3
HOH
HOH
443
A
HOH
43
3
HOH
HOH
444
A
HOH
44
3
HOH
HOH
445
A
HOH
45
3
HOH
HOH
446
A
HOH
46
3
HOH
HOH
447
A
HOH
47
3
HOH
HOH
448
A
HOH
48
3
HOH
HOH
449
A
HOH
49
3
HOH
HOH
450
A
HOH
50
3
HOH
HOH
451
A
HOH
51
3
HOH
HOH
452
A
HOH
52
3
HOH
HOH
453
A
HOH
53
3
HOH
HOH
454
A
HOH
54
3
HOH
HOH
455
A
HOH
55
3
HOH
HOH
456
A
HOH
56
3
HOH
HOH
457
A
HOH
57
3
HOH
HOH
458
A
HOH
58
3
HOH
HOH
459
A
HOH
59
3
HOH
HOH
460
A
HOH
60
3
HOH
HOH
461
A
HOH
61
3
HOH
HOH
462
A
HOH
62
3
HOH
HOH
463
A
HOH
63
3
HOH
HOH
464
A
HOH
64
3
HOH
HOH
465
A
HOH
65
3
HOH
HOH
466
A
HOH
66
3
HOH
HOH
467
A
HOH
67
3
HOH
HOH
468
A
HOH
68
3
HOH
HOH
469
A
HOH
69
3
HOH
HOH
470
A
HOH
70
3
HOH
HOH
471
A
HOH
71
3
HOH
HOH
472
A
HOH
72
3
HOH
HOH
473
A
HOH
73
3
HOH
HOH
474
A
HOH
74
3
HOH
HOH
475
A
HOH
75
3
HOH
HOH
476
A
HOH
76
3
HOH
HOH
477
A
HOH
77
3
HOH
HOH
478
A
HOH
78
3
HOH
HOH
479
A
HOH
79
3
HOH
HOH
480
A
HOH
80
3
HOH
HOH
481
A
HOH
81
3
HOH
HOH
482
A
HOH
82
3
HOH
HOH
483
A
HOH
83
3
HOH
HOH
484
A
HOH
84
3
HOH
HOH
485
A
HOH
85
3
HOH
HOH
486
A
HOH
86
3
HOH
HOH
487
A
HOH
87
3
HOH
HOH
488
A
HOH
88
3
HOH
HOH
489
A
HOH
89
3
HOH
HOH
490
A
HOH
90
3
HOH
HOH
491
A
HOH
91
3
HOH
HOH
492
A
HOH
92
3
HOH
HOH
493
A
HOH
93
3
HOH
HOH
494
A
HOH
94
3
HOH
HOH
495
A
HOH
95
3
HOH
HOH
496
A
HOH
96
3
HOH
HOH
497
A
HOH
97
3
HOH
HOH
498
A
HOH
98
3
HOH
HOH
499
A
HOH
99
3
HOH
HOH
500
A
HOH
100
3
HOH
HOH
501
A
HOH
101
3
HOH
HOH
502
A
HOH
102
3
HOH
HOH
503
A
HOH
103
3
HOH
HOH
504
A
HOH
104
3
HOH
HOH
505
A
HOH
105
3
HOH
HOH
506
A
HOH
106
3
HOH
HOH
507
A
HOH
107
3
HOH
HOH
508
A
HOH
108
3
HOH
HOH
509
A
HOH
109
3
HOH
HOH
510
A
HOH
110
3
HOH
HOH
511
A
HOH
111
3
HOH
HOH
512
A
HOH
112
3
HOH
HOH
513
A
HOH
113
3
HOH
HOH
514
A
HOH
114
3
HOH
HOH
515
A
HOH
115
3
HOH
HOH
516
A
HOH
116
3
HOH
HOH
517
A
HOH
117
3
HOH
HOH
518
A
HOH
118
3
HOH
HOH
519
A
HOH
119
3
HOH
HOH
520
A
HOH
120
3
HOH
HOH
521
A
HOH
121
3
HOH
HOH
522
A
HOH
122
3
HOH
HOH
523
A
HOH
123
3
HOH
HOH
524
A
HOH
124
3
HOH
HOH
525
A
HOH
125
3
HOH
HOH
526
A
HOH
126
3
HOH
HOH
527
A
HOH
127
3
HOH
HOH
528
A
HOH
128
3
HOH
HOH
529
A
HOH
129
3
HOH
HOH
530
A
HOH
130
3
HOH
HOH
531
A
HOH
131
3
HOH
HOH
532
A
HOH
132
3
HOH
HOH
533
A
HOH
133
3
HOH
HOH
534
A
HOH
134
3
HOH
HOH
535
A
HOH
135
3
HOH
HOH
536
A
HOH
136
3
HOH
HOH
537
A
HOH
137
3
HOH
HOH
538
A
HOH
138
3
HOH
HOH
539
A
HOH
139
3
HOH
HOH
540
A
HOH
140
3
HOH
HOH
541
A
HOH
141
3
HOH
HOH
542
A
HOH
142
3
HOH
HOH
543
A
HOH
143
3
HOH
HOH
544
A
HOH
144
3
HOH
HOH
545
A
HOH
145
3
HOH
HOH
546
A
HOH
146
3
HOH
HOH
547
A
HOH
147
3
HOH
HOH
548
A
HOH
148
3
HOH
HOH
549
A
HOH
149
3
HOH
HOH
550
A
HOH
150
3
HOH
HOH
551
A
HOH
151
3
HOH
HOH
552
A
HOH
152
3
HOH
HOH
553
A
HOH
153
3
HOH
HOH
554
A
HOH
154
3
HOH
HOH
555
A
HOH
155
3
HOH
HOH
556
A
HOH
156
3
HOH
HOH
557
A
HOH
157
3
HOH
HOH
558
A
HOH
158
3
HOH
HOH
559
A
HOH
159
3
HOH
HOH
560
A
HOH
160
3
HOH
HOH
561
A
HOH
161
3
HOH
HOH
562
A
HOH
162
3
HOH
HOH
563
A
HOH
163
3
HOH
HOH
564
A
HOH
164
3
HOH
HOH
565
A
HOH
165
3
HOH
HOH
566
A
HOH
166
3
HOH
HOH
567
A
HOH
167
3
HOH
HOH
568
A
HOH
168
3
HOH
HOH
569
A
HOH
169
3
HOH
HOH
570
A
HOH
170
3
HOH
HOH
571
A
HOH
171
3
HOH
HOH
572
A
HOH
172
3
HOH
HOH
573
A
HOH
173
3
HOH
HOH
574
A
HOH
174
3
HOH
HOH
575
A
HOH
175
3
HOH
HOH
576
A
HOH
176
3
HOH
HOH
577
A
HOH
177
3
HOH
HOH
578
A
HOH
178
3
HOH
HOH
579
A
HOH
179
3
HOH
HOH
580
A
HOH
180
3
HOH
HOH
581
A
HOH
181
3
HOH
HOH
582
A
HOH
182
3
HOH
HOH
583
A
HOH
183
3
HOH
HOH
584
A
HOH
184
3
HOH
HOH
585
A
HOH
185
3
HOH
HOH
586
A
HOH
186
3
HOH
HOH
587
A
HOH
187
3
HOH
HOH
588
A
HOH
188
3
HOH
HOH
589
A
HOH
189
3
HOH
HOH
590
A
HOH
190
3
HOH
HOH
591
A
HOH
191
3
HOH
HOH
592
A
HOH
192
3
HOH
HOH
593
A
HOH
193
3
HOH
HOH
594
A
HOH
194
3
HOH
HOH
595
A
HOH
195
3
HOH
HOH
596
A
HOH
196
3
HOH
HOH
597
A
HOH
197
3
HOH
HOH
598
A
HOH
198
3
HOH
HOH
599
A
HOH
199
3
HOH
HOH
600
A
HOH
200
3
HOH
HOH
601
A
HOH
201
3
HOH
HOH
602
A
HOH
202
3
HOH
HOH
603
A
HOH
203
3
HOH
HOH
604
A
HOH
204
3
HOH
HOH
605
A
HOH
205
3
HOH
HOH
606
A
HOH
206
3
HOH
HOH
607
A
HOH
207
3
HOH
HOH
608
A
HOH
208
3
HOH
HOH
609
A
HOH
209
3
HOH
HOH
610
A
HOH
210
3
HOH
HOH
611
A
HOH
211
3
HOH
HOH
612
A
HOH
212
3
HOH
HOH
613
A
HOH
213
3
HOH
HOH
614
A
HOH
214
3
HOH
HOH
615
A
HOH
215
3
HOH
HOH
616
A
n
1
-2
A
n
2
-1
A
n
3
0
A
MSE
1
n
4
MSE
1
A
ALA
2
n
5
ALA
2
A
PHE
3
n
6
PHE
3
A
THR
4
n
7
THR
4
A
PRO
5
n
8
PRO
5
A
PHE
6
n
9
PHE
6
A
PRO
7
n
10
PRO
7
A
PRO
8
n
11
PRO
8
A
ARG
9
n
12
ARG
9
A
GLN
10
n
13
GLN
10
A
PRO
11
n
14
PRO
11
A
THR
12
n
15
THR
12
A
ALA
13
n
16
ALA
13
A
SER
14
n
17
SER
14
A
ALA
15
n
18
ALA
15
A
ARG
16
n
19
ARG
16
A
LEU
17
n
20
LEU
17
A
PRO
18
n
21
PRO
18
A
LEU
19
n
22
LEU
19
A
THR
20
n
23
THR
20
A
LEU
21
n
24
LEU
21
A
MSE
22
n
25
MSE
22
A
THR
23
n
26
THR
23
A
LEU
24
n
27
LEU
24
A
ASP
25
n
28
ASP
25
A
ASP
26
n
29
ASP
26
A
TRP
27
n
30
TRP
27
A
ALA
28
n
31
ALA
28
A
LEU
29
n
32
LEU
29
A
ALA
30
n
33
ALA
30
A
THR
31
n
34
THR
31
A
ILE
32
n
35
ILE
32
A
THR
33
n
36
THR
33
A
GLY
34
n
37
GLY
34
A
ALA
35
n
38
ALA
35
A
ASP
36
n
39
ASP
36
A
SER
37
n
40
SER
37
A
GLU
38
n
41
GLU
38
A
LYS
39
n
42
LYS
39
A
TYR
40
n
43
TYR
40
A
MSE
41
n
44
MSE
41
A
GLN
42
n
45
GLN
42
A
GLY
43
n
46
GLY
43
A
GLN
44
n
47
GLN
44
A
VAL
45
n
48
VAL
45
A
THR
46
n
49
THR
46
A
ALA
47
n
50
ALA
47
A
ASP
48
n
51
ASP
48
A
VAL
49
n
52
VAL
49
A
SER
50
n
53
SER
50
A
GLN
51
n
54
GLN
51
A
MSE
52
n
55
MSE
52
A
ALA
53
n
56
ALA
53
A
GLU
54
n
57
GLU
54
A
ASP
55
n
58
ASP
55
A
GLN
56
n
59
GLN
56
A
HIS
57
n
60
HIS
57
A
LEU
58
n
61
LEU
58
A
LEU
59
n
62
LEU
59
A
ALA
60
n
63
ALA
60
A
ALA
61
n
64
ALA
61
A
HIS
62
n
65
HIS
62
A
CYS
63
n
66
CYS
63
A
ASP
64
n
67
ASP
64
A
ALA
65
n
68
ALA
65
A
LYS
66
n
69
LYS
66
A
GLY
67
n
70
GLY
67
A
LYS
68
n
71
LYS
68
A
MSE
69
n
72
MSE
69
A
TRP
70
n
73
TRP
70
A
SER
71
n
74
SER
71
A
ASN
72
n
75
ASN
72
A
LEU
73
n
76
LEU
73
A
ARG
74
n
77
ARG
74
A
LEU
75
n
78
LEU
75
A
PHE
76
n
79
PHE
76
A
ARG
77
n
80
ARG
77
A
ASP
78
n
81
ASP
78
A
GLY
79
n
82
GLY
79
A
ASP
80
n
83
ASP
80
A
GLY
81
n
84
GLY
81
A
PHE
82
n
85
PHE
82
A
ALA
83
n
86
ALA
83
A
TRP
84
n
87
TRP
84
A
ILE
85
n
88
ILE
85
A
GLU
86
n
89
GLU
86
A
ARG
87
n
90
ARG
87
A
ARG
88
n
91
ARG
88
A
SER
89
n
92
SER
89
A
VAL
90
n
93
VAL
90
A
ARG
91
n
94
ARG
91
A
GLU
92
n
95
GLU
92
A
PRO
93
n
96
PRO
93
A
GLN
94
n
97
GLN
94
A
LEU
95
n
98
LEU
95
A
THR
96
n
99
THR
96
A
GLU
97
n
100
GLU
97
A
LEU
98
n
101
LEU
98
A
LYS
99
n
102
LYS
99
A
LYS
100
n
103
LYS
100
A
TYR
101
n
104
TYR
101
A
ALA
102
n
105
ALA
102
A
VAL
103
n
106
VAL
103
A
PHE
104
n
107
PHE
104
A
SER
105
n
108
SER
105
A
LYS
106
n
109
LYS
106
A
VAL
107
n
110
VAL
107
A
THR
108
n
111
THR
108
A
ILE
109
n
112
ILE
109
A
ALA
110
n
113
ALA
110
A
PRO
111
n
114
PRO
111
A
ASP
112
n
115
ASP
112
A
ASP
113
n
116
ASP
113
A
GLU
114
n
117
GLU
114
A
ARG
115
n
118
ARG
115
A
VAL
116
n
119
VAL
116
A
LEU
117
n
120
LEU
117
A
LEU
118
n
121
LEU
118
A
GLY
119
n
122
GLY
119
A
VAL
120
n
123
VAL
120
A
ALA
121
n
124
ALA
121
A
GLY
122
n
125
GLY
122
A
PHE
123
n
126
PHE
123
A
GLN
124
n
127
GLN
124
A
ALA
125
n
128
ALA
125
A
ARG
126
n
129
ARG
126
A
ALA
127
n
130
ALA
127
A
ALA
128
n
131
ALA
128
A
LEU
129
n
132
LEU
129
A
ALA
130
n
133
ALA
130
A
ASN
131
n
134
ASN
131
A
LEU
132
n
135
LEU
132
A
PHE
133
n
136
PHE
133
A
SER
134
n
137
SER
134
A
GLU
135
n
138
GLU
135
A
LEU
136
n
139
LEU
136
A
PRO
137
n
140
PRO
137
A
SER
138
n
141
SER
138
A
LYS
139
n
142
LYS
139
A
GLU
140
n
143
GLU
140
A
LYS
141
n
144
LYS
141
A
GLN
142
n
145
GLN
142
A
VAL
143
n
146
VAL
143
A
VAL
144
n
147
VAL
144
A
LYS
145
n
148
LYS
145
A
GLU
146
n
149
GLU
146
A
GLY
147
n
150
GLY
147
A
ALA
148
n
151
ALA
148
A
THR
149
n
152
THR
149
A
THR
150
n
153
THR
150
A
LEU
151
n
154
LEU
151
A
LEU
152
n
155
LEU
152
A
TRP
153
n
156
TRP
153
A
PHE
154
n
157
PHE
154
A
GLU
155
n
158
GLU
155
A
HIS
156
n
159
HIS
156
A
PRO
157
n
160
PRO
157
A
ALA
158
n
161
ALA
158
A
GLU
159
n
162
GLU
159
A
ARG
160
n
163
ARG
160
A
PHE
161
n
164
PHE
161
A
LEU
162
n
165
LEU
162
A
ILE
163
n
166
ILE
163
A
VAL
164
n
167
VAL
164
A
THR
165
n
168
THR
165
A
ASP
166
n
169
ASP
166
A
GLU
167
n
170
GLU
167
A
ALA
168
n
171
ALA
168
A
THR
169
n
172
THR
169
A
ALA
170
n
173
ALA
170
A
ASN
171
n
174
ASN
171
A
MSE
172
n
175
MSE
172
A
LEU
173
n
176
LEU
173
A
THR
174
n
177
THR
174
A
ASP
175
n
178
ASP
175
A
LYS
176
n
179
LYS
176
A
LEU
177
n
180
LEU
177
A
ARG
178
n
181
ARG
178
A
GLY
179
n
182
GLY
179
A
GLU
180
n
183
GLU
180
A
ALA
181
n
184
ALA
181
A
GLU
182
n
185
GLU
182
A
LEU
183
n
186
LEU
183
A
ASN
184
n
187
ASN
184
A
ASN
185
n
188
ASN
185
A
SER
186
n
189
SER
186
A
GLN
187
n
190
GLN
187
A
GLN
188
n
191
GLN
188
A
TRP
189
n
192
TRP
189
A
LEU
190
n
193
LEU
190
A
ALA
191
n
194
ALA
191
A
LEU
192
n
195
LEU
192
A
ASN
193
n
196
ASN
193
A
ILE
194
n
197
ILE
194
A
GLU
195
n
198
GLU
195
A
ALA
196
n
199
ALA
196
A
GLY
197
n
200
GLY
197
A
PHE
198
n
201
PHE
198
A
PRO
199
n
202
PRO
199
A
VAL
200
n
203
VAL
200
A
ILE
201
n
204
ILE
201
A
ASP
202
n
205
ASP
202
A
ALA
203
n
206
ALA
203
A
ALA
204
n
207
ALA
204
A
ASN
205
n
208
ASN
205
A
SER
206
n
209
SER
206
A
GLY
207
n
210
GLY
207
A
GLN
208
n
211
GLN
208
A
PHE
209
n
212
PHE
209
A
ILE
210
n
213
ILE
210
A
PRO
211
n
214
PRO
211
A
GLN
212
n
215
GLN
212
A
ALA
213
n
216
ALA
213
A
THR
214
n
217
THR
214
A
ASN
215
n
218
ASN
215
A
LEU
216
n
219
LEU
216
A
GLN
217
n
220
GLN
217
A
ALA
218
n
221
ALA
218
A
LEU
219
n
222
LEU
219
A
GLY
220
n
223
GLY
220
A
GLY
221
n
224
GLY
221
A
ILE
222
n
225
ILE
222
A
SER
223
n
226
SER
223
A
PHE
224
n
227
PHE
224
A
LYS
225
n
228
LYS
225
A
LYS
226
n
229
LYS
226
A
GLY
227
n
230
GLY
227
A
CYS
228
n
231
CYS
228
A
TYR
229
n
232
TYR
229
A
THR
230
n
233
THR
230
A
GLY
231
n
234
GLY
231
A
GLN
232
n
235
GLN
232
A
GLU
233
n
236
GLU
233
A
MSE
234
n
237
MSE
234
A
VAL
235
n
238
VAL
235
A
ALA
236
n
239
ALA
236
A
ARG
237
n
240
ARG
237
A
ALA
238
n
241
ALA
238
A
LYS
239
n
242
LYS
239
A
PHE
240
n
243
PHE
240
A
ARG
241
n
244
ARG
241
A
GLY
242
n
245
GLY
242
A
ALA
243
n
246
ALA
243
A
ASN
244
n
247
ASN
244
A
LYS
245
n
248
LYS
245
A
ARG
246
n
249
ARG
246
A
ALA
247
n
250
ALA
247
A
LEU
248
n
251
LEU
248
A
TRP
249
n
252
TRP
249
A
LEU
250
n
253
LEU
250
A
LEU
251
n
254
LEU
251
A
ALA
252
n
255
ALA
252
A
GLY
253
n
256
GLY
253
A
SER
254
n
257
SER
254
A
ALA
255
n
258
ALA
255
A
SER
256
n
259
SER
256
A
ARG
257
n
260
ARG
257
A
LEU
258
n
261
LEU
258
A
PRO
259
n
262
PRO
259
A
GLU
260
n
263
GLU
260
A
ALA
261
n
264
ALA
261
A
GLY
262
n
265
GLY
262
A
GLU
263
n
266
GLU
263
A
ASP
264
n
267
ASP
264
A
LEU
265
n
268
LEU
265
A
GLU
266
n
269
GLU
266
A
LEU
267
n
270
LEU
267
A
LYS
268
n
271
LYS
268
A
MSE
269
n
272
MSE
269
A
GLY
270
n
273
GLY
270
A
GLU
271
n
274
GLU
271
A
ASN
272
n
275
ASN
272
A
TRP
273
n
276
TRP
273
A
ARG
274
n
277
ARG
274
A
ARG
275
n
278
ARG
275
A
THR
276
n
279
THR
276
A
GLY
277
n
280
GLY
277
A
THR
278
n
281
THR
278
A
VAL
279
n
282
VAL
279
A
LEU
280
n
283
LEU
280
A
ALA
281
n
284
ALA
281
A
ALA
282
n
285
ALA
282
A
VAL
283
n
286
VAL
283
A
LYS
284
n
287
LYS
284
A
LEU
285
n
288
LEU
285
A
GLU
286
n
289
GLU
286
A
ASP
287
n
290
ASP
287
A
GLY
288
n
291
GLY
288
A
GLN
289
n
292
GLN
289
A
VAL
290
n
293
VAL
290
A
VAL
291
n
294
VAL
291
A
VAL
292
n
295
VAL
292
A
GLN
293
n
296
GLN
293
A
VAL
294
n
297
VAL
294
A
VAL
295
n
298
VAL
295
A
MSE
296
n
299
MSE
296
A
ASN
297
n
300
ASN
297
A
ASN
298
n
301
ASN
298
A
ASP
299
n
302
ASP
299
A
MSE
300
n
303
MSE
300
A
GLU
301
n
304
GLU
301
A
PRO
302
n
305
PRO
302
A
ASP
303
n
306
ASP
303
A
SER
304
n
307
SER
304
A
ILE
305
n
308
ILE
305
A
PHE
306
n
309
PHE
306
A
ARG
307
n
310
ARG
307
A
VAL
308
n
311
VAL
308
A
ARG
309
n
312
ARG
309
A
ASP
310
n
313
ASP
310
A
ASP
311
n
314
ASP
311
A
ALA
312
n
315
ALA
312
A
ASN
313
n
316
ASN
313
A
THR
314
n
317
THR
314
A
LEU
315
n
318
LEU
315
A
HIS
316
n
319
HIS
316
A
ILE
317
n
320
ILE
317
A
GLU
318
n
321
GLU
318
A
PRO
319
n
322
PRO
319
A
LEU
320
n
323
LEU
320
A
PRO
321
n
324
PRO
321
A
TYR
322
n
325
TYR
322
A
SER
323
n
326
SER
323
A
LEU
324
n
327
LEU
324
A
GLU
325
n
328
GLU
325
A
author_defined_assembly
1
monomeric
A
MSE
1
SELENOMETHIONINE
A
MSE
4
MET
A
MSE
22
SELENOMETHIONINE
A
MSE
25
MET
A
MSE
41
SELENOMETHIONINE
A
MSE
44
MET
A
MSE
52
SELENOMETHIONINE
A
MSE
55
MET
A
MSE
69
SELENOMETHIONINE
A
MSE
72
MET
A
MSE
172
SELENOMETHIONINE
A
MSE
175
MET
A
MSE
234
SELENOMETHIONINE
A
MSE
237
MET
A
MSE
269
SELENOMETHIONINE
A
MSE
272
MET
A
MSE
296
SELENOMETHIONINE
A
MSE
299
MET
A
MSE
300
SELENOMETHIONINE
A
MSE
303
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
144
A
N
VAL
147
A
O
LEU
151
A
O
LEU
154
A
N
THR
150
A
N
THR
153
A
O
VAL
164
A
O
VAL
167
A
O
THR
165
A
O
THR
168
A
N
VAL
116
A
N
VAL
119
A
O
GLY
119
A
O
GLY
122
A
N
MSE
22
A
N
MSE
25
A
N
LEU
21
A
N
LEU
24
A
O
GLU
182
A
O
GLU
185
A
N
HIS
62
A
N
HIS
65
A
O
TRP
70
A
O
TRP
73
A
N
PHE
76
A
N
PHE
79
A
O
ALA
83
A
O
ALA
86
A
O
GLU
86
A
O
GLU
89
A
N
ALA
28
A
N
ALA
31
A
N
THR
33
A
N
THR
36
A
O
THR
108
A
O
THR
111
A
N
ALA
281
A
N
ALA
284
A
O
GLN
293
A
O
GLN
296
A
O
VAL
294
A
O
VAL
297
A
N
TRP
249
A
N
TRP
252
A
N
LEU
250
A
N
LEU
253
A
O
GLU
318
A
O
GLU
321
1
A
GLY
-2
A
GLY
1
1
Y
1
A
SER
-1
A
SER
2
1
Y
1
A
HIS
0
A
HIS
3
1
Y
1
A
A
OE1
NE2
GLU
GLN
86
94
1.94
1
A
A
O
N
GLU
ASP
301
303
2.02
1
A
A
O
ND2
LYS
ASN
268
272
2.17
1
8.18
0.90
118.30
126.48
A
A
A
CB
CG
OD2
ASP
ASP
ASP
25
25
25
N
1
6.13
0.90
118.30
124.43
A
A
A
CB
CG
OD2
ASP
ASP
ASP
112
112
112
N
1
6.31
0.90
118.30
124.61
A
A
A
CB
CG
OD2
ASP
ASP
ASP
113
113
113
N
1
-3.60
0.50
120.30
116.70
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
126
126
126
N
1
-13.51
2.00
110.40
96.89
A
A
A
CB
CA
C
ASP
ASP
ASP
166
166
166
N
1
6.06
0.90
118.30
124.36
A
A
A
CB
CG
OD2
ASP
ASP
ASP
175
175
175
N
1
16.97
2.30
115.30
132.27
A
A
A
CA
CB
CG
LEU
LEU
LEU
248
248
248
N
1
5.43
0.90
118.30
123.73
A
A
A
CB
CG
OD2
ASP
ASP
ASP
264
264
264
N
1
A
THR
12
-106.90
-166.16
1
A
LEU
24
-99.00
56.73
1
A
ASP
26
-69.40
3.40
1
A
LEU
59
-104.53
75.82
1
A
SER
71
168.12
158.74
1
A
SER
89
-62.63
0.03
1
A
VAL
90
-140.94
-15.41
1
A
PHE
123
-40.10
-79.84
1
A
GLN
124
-116.47
56.10
1
A
ALA
158
-161.16
-8.02
1
A
GLU
159
112.48
111.09
1
A
ASN
185
-119.23
-160.81
1
A
THR
214
-145.55
-2.02
1
A
ASN
215
81.02
12.29
1
A
CYS
228
171.66
132.35
1
A
ALA
243
-55.29
106.61
1
A
LYS
245
-30.14
-94.27
1
A
ARG
246
-134.17
-153.37
1
A
ALA
255
-172.61
148.99
1
A
MSE
269
-64.74
35.02
1
A
GLU
271
-150.19
16.65
1
A
TRP
273
-52.97
-157.63
1
A
ARG
274
-127.89
-96.15
1
A
THR
276
-104.76
-86.42
1
A
GLU
286
-56.93
-70.23
1
A
ASP
287
-12.72
-60.05
1
A
MSE
300
-179.69
149.60
1
A
PRO
302
-49.17
39.59
1
A
ASP
303
-131.48
-45.28
1
A
ARG
307
-173.87
127.23
1
A
VAL
308
-34.23
138.85
1
A
ALA
312
-154.49
66.84
1
A
THR
314
-59.09
89.17
1
A
HIS
316
-115.70
-157.92
64.4
0.12
0.06
0.00
0.12
0.00
-0.18
0.943
0.903
0.25179
0.19285
0.19592
0.19592
2.80
10.00
1106
20431
20431
5.1
100.00
9.468
0.182
RANDOM
1
THROUGHOUT
0
MAD
0.298
0.264
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
0.264
0.298
2.80
10.00
215
2761
10
0
2536
0.013
0.021
2594
1.644
1.957
3516
7.296
5.000
324
0.104
0.200
390
0.004
0.020
1972
0.317
0.200
1341
0.229
0.200
182
0.324
0.200
46
0.151
0.200
5
4.571
4.000
1619
7.674
8.000
2590
8.741
8.000
975
10.384
8.000
926
0.46
0.398
2.871
72
1353
20
71.3
2.8
20
1NRK
21998
21998
0
-3
0.055
1
22.4
4.9
98.5
0.423
2.8
2.9
2.1
2412
4.1
97.1
refinement
REFMAC
5.1.24
data reduction
HKL-2000
data scaling
SCALEPACK
phasing
MLPHARE
YGFZ PROTEIN
1
N
N
2
N
N
2
N
N
3
N
N
A
ALA
13
A
ALA
16
HELX_P
A
LEU
17
A
LEU
20
5
1
5
A
ASP
36
A
ASP
39
HELX_P
A
GLY
43
A
GLY
46
1
2
8
A
VAL
90
A
VAL
93
HELX_P
A
TYR
101
A
TYR
104
1
3
12
A
ALA
102
A
ALA
105
HELX_P
A
SER
105
A
SER
108
5
4
4
A
GLN
124
A
GLN
127
HELX_P
A
ASN
131
A
ASN
134
1
5
8
A
ASP
166
A
ASP
169
HELX_P
A
ARG
178
A
ARG
181
1
6
13
A
SER
186
A
SER
189
HELX_P
A
ALA
196
A
ALA
199
1
7
11
A
ASP
202
A
ASP
205
HELX_P
A
SER
206
A
SER
209
5
8
5
A
ILE
210
A
ILE
213
HELX_P
A
GLY
220
A
GLY
223
5
9
11
A
GLY
231
A
GLY
234
HELX_P
A
ARG
241
A
ARG
244
1
10
11
covale
1.333
both
A
MSE
1
A
C
MSE
4
1_555
A
ALA
2
A
N
ALA
5
1_555
covale
1.318
both
A
LEU
21
A
C
LEU
24
1_555
A
MSE
22
A
N
MSE
25
1_555
covale
1.312
both
A
MSE
22
A
C
MSE
25
1_555
A
THR
23
A
N
THR
26
1_555
covale
1.344
both
A
TYR
40
A
C
TYR
43
1_555
A
MSE
41
A
N
MSE
44
1_555
covale
1.333
both
A
MSE
41
A
C
MSE
44
1_555
A
GLN
42
A
N
GLN
45
1_555
covale
1.326
both
A
GLN
51
A
C
GLN
54
1_555
A
MSE
52
A
N
MSE
55
1_555
covale
1.329
both
A
MSE
52
A
C
MSE
55
1_555
A
ALA
53
A
N
ALA
56
1_555
covale
1.333
both
A
LYS
68
A
C
LYS
71
1_555
A
MSE
69
A
N
MSE
72
1_555
covale
1.334
both
A
MSE
69
A
C
MSE
72
1_555
A
TRP
70
A
N
TRP
73
1_555
covale
1.327
both
A
ASN
171
A
C
ASN
174
1_555
A
MSE
172
A
N
MSE
175
1_555
covale
1.337
both
A
MSE
172
A
C
MSE
175
1_555
A
LEU
173
A
N
LEU
176
1_555
covale
1.332
both
A
GLU
233
A
C
GLU
236
1_555
A
MSE
234
A
N
MSE
237
1_555
covale
1.332
both
A
MSE
234
A
C
MSE
237
1_555
A
VAL
235
A
N
VAL
238
1_555
covale
1.331
both
A
LYS
268
A
C
LYS
271
1_555
A
MSE
269
A
N
MSE
272
1_555
covale
1.336
both
A
MSE
269
A
C
MSE
272
1_555
A
GLY
270
A
N
GLY
273
1_555
covale
1.332
both
A
VAL
295
A
C
VAL
298
1_555
A
MSE
296
A
N
MSE
299
1_555
covale
1.328
both
A
MSE
296
A
C
MSE
299
1_555
A
ASN
297
A
N
ASN
300
1_555
covale
1.327
both
A
ASP
299
A
C
ASP
302
1_555
A
MSE
300
A
N
MSE
303
1_555
covale
1.331
both
A
MSE
300
A
C
MSE
303
1_555
A
GLU
301
A
N
GLU
304
1_555
STRUCTURAL GENOMICS, UNKNOWN FUNCTION
YGFZ, STRUCTURAL GENOMICS, UNKNOWN FUNCTION, Structure 2 Function Project, S2F
A
HIS
156
A
HIS
159
1
A
PRO
157
A
PRO
160
-11.76
UP14_ECOLI
UNP
1
1
P39179
MAFTPFPPRQPTASARLPLTLMTLDDWALATITGADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGKMWSNLRLFRDGD
GFAWIERRSVREPQLTELKKYAVFSKVTIAPDDERVLLGVAGFQARAALANLFSELPSKEKQVVKEGATTLLWFEHPAER
FLIVTDEATANMLTDKLRGEAELNNSQQWLALNIEAGFPVIDAANSGQFIPQATNLQALGGISFKKGCYTGQEMVARAKF
RGANKRALWLLAGSASRLPEAGEDLELKMGENWRRTGTVLAAVKLEDGQVVVQVVMNNDMEPDSIFRVRDDANTLHIEPL
PYSLE
1
325
1NRK
1
325
P39179
A
1
4
328
1
expression tag
GLY
-2
1NRK
A
P39179
UNP
1
1
expression tag
SER
-1
1NRK
A
P39179
UNP
2
1
expression tag
HIS
0
1NRK
A
P39179
UNP
3
1
MET
modified residue
MSE
1
1NRK
A
P39179
UNP
1
4
1
MET
modified residue
MSE
22
1NRK
A
P39179
UNP
22
25
1
MET
modified residue
MSE
41
1NRK
A
P39179
UNP
41
44
1
MET
modified residue
MSE
52
1NRK
A
P39179
UNP
52
55
1
MET
modified residue
MSE
69
1NRK
A
P39179
UNP
69
72
1
MET
modified residue
MSE
172
1NRK
A
P39179
UNP
172
175
1
MET
modified residue
MSE
234
1NRK
A
P39179
UNP
234
237
1
MET
modified residue
MSE
269
1NRK
A
P39179
UNP
269
272
1
MET
modified residue
MSE
296
1NRK
A
P39179
UNP
296
299
1
MET
modified residue
MSE
300
1NRK
A
P39179
UNP
300
303
6
5
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
143
A
VAL
146
A
GLU
146
A
GLU
149
A
THR
149
A
THR
152
A
PHE
154
A
PHE
157
A
ARG
160
A
ARG
163
A
THR
165
A
THR
168
A
VAL
116
A
VAL
119
A
ALA
121
A
ALA
124
A
THR
20
A
THR
23
A
THR
23
A
THR
26
A
GLU
182
A
GLU
185
A
ASN
185
A
ASN
188
A
LEU
58
A
LEU
61
A
CYS
63
A
CYS
66
A
MSE
69
A
MSE
72
A
ASP
78
A
ASP
81
A
GLY
81
A
GLY
84
A
ARG
87
A
ARG
90
A
TRP
27
A
TRP
30
A
THR
33
A
THR
36
A
THR
108
A
THR
111
A
ASP
112
A
ASP
115
A
THR
278
A
THR
281
A
LYS
284
A
LYS
287
A
GLN
289
A
GLN
292
A
ASN
297
A
ASN
300
A
ARG
246
A
ARG
249
A
SER
254
A
SER
257
A
HIS
316
A
HIS
319
A
GLU
318
A
GLU
321
BINDING SITE FOR RESIDUE SO4 A 400
A
SO4
400
Software
7
BINDING SITE FOR RESIDUE SO4 A 401
A
SO4
401
Software
3
A
TRP
27
A
TRP
30
7
1_555
A
ARG
74
A
ARG
77
7
1_555
A
PHE
154
A
PHE
157
7
1_555
A
LEU
162
A
LEU
165
7
1_555
A
TRP
189
A
TRP
192
7
1_555
A
ASN
193
A
ASN
196
7
1_555
A
HOH
416
D
HOH
7
1_555
A
GLY
79
A
GLY
82
3
1_555
A
LYS
145
A
LYS
148
3
1_555
A
HOH
497
D
HOH
3
1_555
152
P 31 2 1