0.022261
0.000000
0.004793
0.000000
0.017050
0.000000
0.000000
0.000000
0.017816
0.00000
0.00000
0.00000
Benach, J.
Shen, J.
Rost, B.
Xiao, R.
Acton, T.
Montelione, G.
Hunt, J.F.
Northeast Structural Genomics Consortium (NESG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
102.15
90.00
44.922
58.652
57.415
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
Structure of YBEA from E. coli
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
90.0
1
CCD
2002-11-22
BRANDEIS - B4
SI
MAD
M
x-ray
1
0.97888
1.0
X12C
NSLS
0.97888
SYNCHROTRON
NSLS BEAMLINE X12C
17552.676
Hypothetical protein ybeA
2
man
polymer
18.015
water
409
nat
water
no
yes
(MSE)KLQLVAVGTK(MSE)PDWVQTGFTEYLRRFPKD(MSE)PFELIEIPAGKRGKNADIKRILDKEGEQ(MSE)LAAA
GKNRIVTLDIPGKPWDTPQLAAELERWKLDGRDVSLLIGGPEGLSPACKAAAEQSWSLSALTLPHPLVRVLVAESLYRAW
SITTNHPYHRE
MKLQLVAVGTKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRGKNADIKRILDKEGEQMLAAAGKNRIVTLDIPGKPWD
TPQLAAELERWKLDGRDVSLLIGGPEGLSPACKAAAEQSWSLSALTLPHPLVRVLVAESLYRAWSITTNHPYHRE
A,B
ER45
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
ybea
562
Escherichia coli
562
Escherichia coli
1
1.86
33.44
20% PEG 3350, 0.2M LICL2
Northeast Structural Genomics Consortium
NESG
PSI, Protein Structure Initiative
software
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Data collection
Derived calculations
Refinement description
1
0
2003-02-04
1
1
2008-04-29
1
2
2011-07-13
1
3
2019-07-24
_software.name
_software.version
_struct_conn.pdbx_leaving_atom_flag
Y
RCSB
Y
RCSB
2003-01-27
REL
REL
HOH
water
HOH
3001
2
HOH
HOH
3001
A
HOH
3002
2
HOH
HOH
3002
A
HOH
3006
2
HOH
HOH
3006
A
HOH
3007
2
HOH
HOH
3007
A
HOH
3008
2
HOH
HOH
3008
A
HOH
3009
2
HOH
HOH
3009
A
HOH
3010
2
HOH
HOH
3010
A
HOH
3012
2
HOH
HOH
3012
A
HOH
3013
2
HOH
HOH
3013
A
HOH
3014
2
HOH
HOH
3014
A
HOH
3016
2
HOH
HOH
3016
A
HOH
3018
2
HOH
HOH
3018
A
HOH
3020
2
HOH
HOH
3020
A
HOH
3021
2
HOH
HOH
3021
A
HOH
3022
2
HOH
HOH
3022
A
HOH
3023
2
HOH
HOH
3023
A
HOH
3026
2
HOH
HOH
3026
A
HOH
3027
2
HOH
HOH
3027
A
HOH
3031
2
HOH
HOH
3031
A
HOH
3032
2
HOH
HOH
3032
A
HOH
3033
2
HOH
HOH
3033
A
HOH
3034
2
HOH
HOH
3034
A
HOH
3036
2
HOH
HOH
3036
A
HOH
3037
2
HOH
HOH
3037
A
HOH
3038
2
HOH
HOH
3038
A
HOH
3041
2
HOH
HOH
3041
A
HOH
3042
2
HOH
HOH
3042
A
HOH
3044
2
HOH
HOH
3044
A
HOH
3045
2
HOH
HOH
3045
A
HOH
3046
2
HOH
HOH
3046
A
HOH
3051
2
HOH
HOH
3051
A
HOH
3052
2
HOH
HOH
3052
A
HOH
3055
2
HOH
HOH
3055
A
HOH
3057
2
HOH
HOH
3057
A
HOH
3061
2
HOH
HOH
3061
A
HOH
3062
2
HOH
HOH
3062
A
HOH
3063
2
HOH
HOH
3063
A
HOH
3064
2
HOH
HOH
3064
A
HOH
3065
2
HOH
HOH
3065
A
HOH
3067
2
HOH
HOH
3067
A
HOH
3068
2
HOH
HOH
3068
A
HOH
3070
2
HOH
HOH
3070
A
HOH
3072
2
HOH
HOH
3072
A
HOH
3073
2
HOH
HOH
3073
A
HOH
3076
2
HOH
HOH
3076
A
HOH
3077
2
HOH
HOH
3077
A
HOH
3080
2
HOH
HOH
3080
A
HOH
3084
2
HOH
HOH
3084
A
HOH
3088
2
HOH
HOH
3088
A
HOH
3090
2
HOH
HOH
3090
A
HOH
3092
2
HOH
HOH
3092
A
HOH
3093
2
HOH
HOH
3093
A
HOH
3096
2
HOH
HOH
3096
A
HOH
3097
2
HOH
HOH
3097
A
HOH
3098
2
HOH
HOH
3098
A
HOH
3100
2
HOH
HOH
3100
A
HOH
3103
2
HOH
HOH
3103
A
HOH
3104
2
HOH
HOH
3104
A
HOH
3108
2
HOH
HOH
3108
A
HOH
3109
2
HOH
HOH
3109
A
HOH
3111
2
HOH
HOH
3111
A
HOH
3112
2
HOH
HOH
3112
A
HOH
3113
2
HOH
HOH
3113
A
HOH
3114
2
HOH
HOH
3114
A
HOH
3115
2
HOH
HOH
3115
A
HOH
3116
2
HOH
HOH
3116
A
HOH
3118
2
HOH
HOH
3118
A
HOH
3119
2
HOH
HOH
3119
A
HOH
3124
2
HOH
HOH
3124
A
HOH
3125
2
HOH
HOH
3125
A
HOH
3128
2
HOH
HOH
3128
A
HOH
3129
2
HOH
HOH
3129
A
HOH
3131
2
HOH
HOH
3131
A
HOH
3132
2
HOH
HOH
3132
A
HOH
3137
2
HOH
HOH
3137
A
HOH
3138
2
HOH
HOH
3138
A
HOH
3139
2
HOH
HOH
3139
A
HOH
3141
2
HOH
HOH
3141
A
HOH
3143
2
HOH
HOH
3143
A
HOH
3154
2
HOH
HOH
3154
A
HOH
3156
2
HOH
HOH
3156
A
HOH
3159
2
HOH
HOH
3159
A
HOH
3160
2
HOH
HOH
3160
A
HOH
3162
2
HOH
HOH
3162
A
HOH
3164
2
HOH
HOH
3164
A
HOH
3165
2
HOH
HOH
3165
A
HOH
3166
2
HOH
HOH
3166
A
HOH
3167
2
HOH
HOH
3167
A
HOH
3169
2
HOH
HOH
3169
A
HOH
3171
2
HOH
HOH
3171
A
HOH
3173
2
HOH
HOH
3173
A
HOH
3175
2
HOH
HOH
3175
A
HOH
3178
2
HOH
HOH
3178
A
HOH
3179
2
HOH
HOH
3179
A
HOH
3182
2
HOH
HOH
3182
A
HOH
3183
2
HOH
HOH
3183
A
HOH
3184
2
HOH
HOH
3184
A
HOH
3185
2
HOH
HOH
3185
A
HOH
3186
2
HOH
HOH
3186
A
HOH
3187
2
HOH
HOH
3187
A
HOH
3189
2
HOH
HOH
3189
A
HOH
3190
2
HOH
HOH
3190
A
HOH
3191
2
HOH
HOH
3191
A
HOH
3192
2
HOH
HOH
3192
A
HOH
3194
2
HOH
HOH
3194
A
HOH
3195
2
HOH
HOH
3195
A
HOH
3196
2
HOH
HOH
3196
A
HOH
3197
2
HOH
HOH
3197
A
HOH
3198
2
HOH
HOH
3198
A
HOH
3202
2
HOH
HOH
3202
A
HOH
3203
2
HOH
HOH
3203
A
HOH
3208
2
HOH
HOH
3208
A
HOH
3212
2
HOH
HOH
3212
A
HOH
3214
2
HOH
HOH
3214
A
HOH
3215
2
HOH
HOH
3215
A
HOH
3216
2
HOH
HOH
3216
A
HOH
3219
2
HOH
HOH
3219
A
HOH
3221
2
HOH
HOH
3221
A
HOH
3222
2
HOH
HOH
3222
A
HOH
3223
2
HOH
HOH
3223
A
HOH
3224
2
HOH
HOH
3224
A
HOH
3229
2
HOH
HOH
3229
A
HOH
3230
2
HOH
HOH
3230
A
HOH
3231
2
HOH
HOH
3231
A
HOH
3234
2
HOH
HOH
3234
A
HOH
3236
2
HOH
HOH
3236
A
HOH
3237
2
HOH
HOH
3237
A
HOH
3238
2
HOH
HOH
3238
A
HOH
3239
2
HOH
HOH
3239
A
HOH
3240
2
HOH
HOH
3240
A
HOH
3241
2
HOH
HOH
3241
A
HOH
3242
2
HOH
HOH
3242
A
HOH
3244
2
HOH
HOH
3244
A
HOH
3247
2
HOH
HOH
3247
A
HOH
3248
2
HOH
HOH
3248
A
HOH
3249
2
HOH
HOH
3249
A
HOH
3250
2
HOH
HOH
3250
A
HOH
3255
2
HOH
HOH
3255
A
HOH
3257
2
HOH
HOH
3257
A
HOH
3258
2
HOH
HOH
3258
A
HOH
3259
2
HOH
HOH
3259
A
HOH
3260
2
HOH
HOH
3260
A
HOH
3264
2
HOH
HOH
3264
A
HOH
3266
2
HOH
HOH
3266
A
HOH
3269
2
HOH
HOH
3269
A
HOH
3272
2
HOH
HOH
3272
A
HOH
3273
2
HOH
HOH
3273
A
HOH
3274
2
HOH
HOH
3274
A
HOH
3278
2
HOH
HOH
3278
A
HOH
3280
2
HOH
HOH
3280
A
HOH
3281
2
HOH
HOH
3281
A
HOH
3282
2
HOH
HOH
3282
A
HOH
3284
2
HOH
HOH
3284
A
HOH
3286
2
HOH
HOH
3286
A
HOH
3287
2
HOH
HOH
3287
A
HOH
3288
2
HOH
HOH
3288
A
HOH
3289
2
HOH
HOH
3289
A
HOH
3290
2
HOH
HOH
3290
A
HOH
3292
2
HOH
HOH
3292
A
HOH
3298
2
HOH
HOH
3298
A
HOH
3304
2
HOH
HOH
3304
A
HOH
3307
2
HOH
HOH
3307
A
HOH
3313
2
HOH
HOH
3313
A
HOH
3315
2
HOH
HOH
3315
A
HOH
3318
2
HOH
HOH
3318
A
HOH
3319
2
HOH
HOH
3319
A
HOH
3320
2
HOH
HOH
3320
A
HOH
3321
2
HOH
HOH
3321
A
HOH
3323
2
HOH
HOH
3323
A
HOH
3324
2
HOH
HOH
3324
A
HOH
3325
2
HOH
HOH
3325
A
HOH
3329
2
HOH
HOH
3329
A
HOH
3332
2
HOH
HOH
3332
A
HOH
3340
2
HOH
HOH
3340
A
HOH
3341
2
HOH
HOH
3341
A
HOH
3342
2
HOH
HOH
3342
A
HOH
3343
2
HOH
HOH
3343
A
HOH
3344
2
HOH
HOH
3344
A
HOH
3348
2
HOH
HOH
3348
A
HOH
3353
2
HOH
HOH
3353
A
HOH
3354
2
HOH
HOH
3354
A
HOH
3356
2
HOH
HOH
3356
A
HOH
3358
2
HOH
HOH
3358
A
HOH
3359
2
HOH
HOH
3359
A
HOH
3364
2
HOH
HOH
3364
A
HOH
3365
2
HOH
HOH
3365
A
HOH
3366
2
HOH
HOH
3366
A
HOH
3373
2
HOH
HOH
3373
A
HOH
3375
2
HOH
HOH
3375
A
HOH
3380
2
HOH
HOH
3380
A
HOH
3381
2
HOH
HOH
3381
A
HOH
3382
2
HOH
HOH
3382
A
HOH
3384
2
HOH
HOH
3384
A
HOH
3385
2
HOH
HOH
3385
A
HOH
3388
2
HOH
HOH
3388
A
HOH
3389
2
HOH
HOH
3389
A
HOH
3390
2
HOH
HOH
3390
A
HOH
3395
2
HOH
HOH
3395
A
HOH
3396
2
HOH
HOH
3396
A
HOH
3398
2
HOH
HOH
3398
A
HOH
3399
2
HOH
HOH
3399
A
HOH
3400
2
HOH
HOH
3400
A
HOH
3402
2
HOH
HOH
3402
A
HOH
3403
2
HOH
HOH
3403
A
HOH
3404
2
HOH
HOH
3404
A
HOH
3405
2
HOH
HOH
3405
A
HOH
3406
2
HOH
HOH
3406
A
HOH
3407
2
HOH
HOH
3407
A
HOH
3408
2
HOH
HOH
3408
A
HOH
3411
2
HOH
HOH
3411
A
HOH
3414
2
HOH
HOH
3414
A
HOH
3415
2
HOH
HOH
3415
A
HOH
3417
2
HOH
HOH
3417
A
HOH
3419
2
HOH
HOH
3419
A
HOH
3421
2
HOH
HOH
3421
A
HOH
3424
2
HOH
HOH
3424
A
HOH
3427
2
HOH
HOH
3427
A
HOH
3431
2
HOH
HOH
3431
A
HOH
3432
2
HOH
HOH
3432
A
HOH
3435
2
HOH
HOH
3435
A
HOH
3436
2
HOH
HOH
3436
A
HOH
3437
2
HOH
HOH
3437
A
HOH
3438
2
HOH
HOH
3438
A
HOH
3439
2
HOH
HOH
3439
A
HOH
3441
2
HOH
HOH
3441
A
HOH
3003
2
HOH
HOH
3003
B
HOH
3004
2
HOH
HOH
3004
B
HOH
3005
2
HOH
HOH
3005
B
HOH
3011
2
HOH
HOH
3011
B
HOH
3015
2
HOH
HOH
3015
B
HOH
3017
2
HOH
HOH
3017
B
HOH
3019
2
HOH
HOH
3019
B
HOH
3024
2
HOH
HOH
3024
B
HOH
3025
2
HOH
HOH
3025
B
HOH
3028
2
HOH
HOH
3028
B
HOH
3029
2
HOH
HOH
3029
B
HOH
3030
2
HOH
HOH
3030
B
HOH
3035
2
HOH
HOH
3035
B
HOH
3039
2
HOH
HOH
3039
B
HOH
3040
2
HOH
HOH
3040
B
HOH
3043
2
HOH
HOH
3043
B
HOH
3047
2
HOH
HOH
3047
B
HOH
3048
2
HOH
HOH
3048
B
HOH
3049
2
HOH
HOH
3049
B
HOH
3050
2
HOH
HOH
3050
B
HOH
3053
2
HOH
HOH
3053
B
HOH
3054
2
HOH
HOH
3054
B
HOH
3056
2
HOH
HOH
3056
B
HOH
3058
2
HOH
HOH
3058
B
HOH
3059
2
HOH
HOH
3059
B
HOH
3060
2
HOH
HOH
3060
B
HOH
3066
2
HOH
HOH
3066
B
HOH
3069
2
HOH
HOH
3069
B
HOH
3071
2
HOH
HOH
3071
B
HOH
3074
2
HOH
HOH
3074
B
HOH
3075
2
HOH
HOH
3075
B
HOH
3078
2
HOH
HOH
3078
B
HOH
3079
2
HOH
HOH
3079
B
HOH
3081
2
HOH
HOH
3081
B
HOH
3082
2
HOH
HOH
3082
B
HOH
3083
2
HOH
HOH
3083
B
HOH
3085
2
HOH
HOH
3085
B
HOH
3086
2
HOH
HOH
3086
B
HOH
3087
2
HOH
HOH
3087
B
HOH
3089
2
HOH
HOH
3089
B
HOH
3091
2
HOH
HOH
3091
B
HOH
3094
2
HOH
HOH
3094
B
HOH
3095
2
HOH
HOH
3095
B
HOH
3099
2
HOH
HOH
3099
B
HOH
3101
2
HOH
HOH
3101
B
HOH
3102
2
HOH
HOH
3102
B
HOH
3105
2
HOH
HOH
3105
B
HOH
3106
2
HOH
HOH
3106
B
HOH
3107
2
HOH
HOH
3107
B
HOH
3110
2
HOH
HOH
3110
B
HOH
3117
2
HOH
HOH
3117
B
HOH
3120
2
HOH
HOH
3120
B
HOH
3121
2
HOH
HOH
3121
B
HOH
3122
2
HOH
HOH
3122
B
HOH
3123
2
HOH
HOH
3123
B
HOH
3126
2
HOH
HOH
3126
B
HOH
3127
2
HOH
HOH
3127
B
HOH
3130
2
HOH
HOH
3130
B
HOH
3133
2
HOH
HOH
3133
B
HOH
3134
2
HOH
HOH
3134
B
HOH
3136
2
HOH
HOH
3136
B
HOH
3140
2
HOH
HOH
3140
B
HOH
3142
2
HOH
HOH
3142
B
HOH
3144
2
HOH
HOH
3144
B
HOH
3145
2
HOH
HOH
3145
B
HOH
3147
2
HOH
HOH
3147
B
HOH
3148
2
HOH
HOH
3148
B
HOH
3149
2
HOH
HOH
3149
B
HOH
3150
2
HOH
HOH
3150
B
HOH
3151
2
HOH
HOH
3151
B
HOH
3152
2
HOH
HOH
3152
B
HOH
3155
2
HOH
HOH
3155
B
HOH
3157
2
HOH
HOH
3157
B
HOH
3158
2
HOH
HOH
3158
B
HOH
3161
2
HOH
HOH
3161
B
HOH
3163
2
HOH
HOH
3163
B
HOH
3168
2
HOH
HOH
3168
B
HOH
3170
2
HOH
HOH
3170
B
HOH
3172
2
HOH
HOH
3172
B
HOH
3174
2
HOH
HOH
3174
B
HOH
3176
2
HOH
HOH
3176
B
HOH
3177
2
HOH
HOH
3177
B
HOH
3180
2
HOH
HOH
3180
B
HOH
3181
2
HOH
HOH
3181
B
HOH
3188
2
HOH
HOH
3188
B
HOH
3193
2
HOH
HOH
3193
B
HOH
3199
2
HOH
HOH
3199
B
HOH
3201
2
HOH
HOH
3201
B
HOH
3204
2
HOH
HOH
3204
B
HOH
3205
2
HOH
HOH
3205
B
HOH
3206
2
HOH
HOH
3206
B
HOH
3207
2
HOH
HOH
3207
B
HOH
3209
2
HOH
HOH
3209
B
HOH
3210
2
HOH
HOH
3210
B
HOH
3211
2
HOH
HOH
3211
B
HOH
3213
2
HOH
HOH
3213
B
HOH
3218
2
HOH
HOH
3218
B
HOH
3220
2
HOH
HOH
3220
B
HOH
3225
2
HOH
HOH
3225
B
HOH
3226
2
HOH
HOH
3226
B
HOH
3227
2
HOH
HOH
3227
B
HOH
3228
2
HOH
HOH
3228
B
HOH
3233
2
HOH
HOH
3233
B
HOH
3235
2
HOH
HOH
3235
B
HOH
3243
2
HOH
HOH
3243
B
HOH
3245
2
HOH
HOH
3245
B
HOH
3246
2
HOH
HOH
3246
B
HOH
3251
2
HOH
HOH
3251
B
HOH
3254
2
HOH
HOH
3254
B
HOH
3256
2
HOH
HOH
3256
B
HOH
3261
2
HOH
HOH
3261
B
HOH
3262
2
HOH
HOH
3262
B
HOH
3263
2
HOH
HOH
3263
B
HOH
3265
2
HOH
HOH
3265
B
HOH
3267
2
HOH
HOH
3267
B
HOH
3268
2
HOH
HOH
3268
B
HOH
3270
2
HOH
HOH
3270
B
HOH
3275
2
HOH
HOH
3275
B
HOH
3276
2
HOH
HOH
3276
B
HOH
3279
2
HOH
HOH
3279
B
HOH
3283
2
HOH
HOH
3283
B
HOH
3291
2
HOH
HOH
3291
B
HOH
3293
2
HOH
HOH
3293
B
HOH
3299
2
HOH
HOH
3299
B
HOH
3300
2
HOH
HOH
3300
B
HOH
3302
2
HOH
HOH
3302
B
HOH
3303
2
HOH
HOH
3303
B
HOH
3305
2
HOH
HOH
3305
B
HOH
3306
2
HOH
HOH
3306
B
HOH
3308
2
HOH
HOH
3308
B
HOH
3309
2
HOH
HOH
3309
B
HOH
3311
2
HOH
HOH
3311
B
HOH
3312
2
HOH
HOH
3312
B
HOH
3314
2
HOH
HOH
3314
B
HOH
3317
2
HOH
HOH
3317
B
HOH
3326
2
HOH
HOH
3326
B
HOH
3327
2
HOH
HOH
3327
B
HOH
3328
2
HOH
HOH
3328
B
HOH
3331
2
HOH
HOH
3331
B
HOH
3333
2
HOH
HOH
3333
B
HOH
3334
2
HOH
HOH
3334
B
HOH
3335
2
HOH
HOH
3335
B
HOH
3336
2
HOH
HOH
3336
B
HOH
3337
2
HOH
HOH
3337
B
HOH
3338
2
HOH
HOH
3338
B
HOH
3339
2
HOH
HOH
3339
B
HOH
3345
2
HOH
HOH
3345
B
HOH
3346
2
HOH
HOH
3346
B
HOH
3347
2
HOH
HOH
3347
B
HOH
3350
2
HOH
HOH
3350
B
HOH
3352
2
HOH
HOH
3352
B
HOH
3355
2
HOH
HOH
3355
B
HOH
3357
2
HOH
HOH
3357
B
HOH
3360
2
HOH
HOH
3360
B
HOH
3361
2
HOH
HOH
3361
B
HOH
3363
2
HOH
HOH
3363
B
HOH
3367
2
HOH
HOH
3367
B
HOH
3368
2
HOH
HOH
3368
B
HOH
3369
2
HOH
HOH
3369
B
HOH
3370
2
HOH
HOH
3370
B
HOH
3372
2
HOH
HOH
3372
B
HOH
3374
2
HOH
HOH
3374
B
HOH
3376
2
HOH
HOH
3376
B
HOH
3377
2
HOH
HOH
3377
B
HOH
3378
2
HOH
HOH
3378
B
HOH
3379
2
HOH
HOH
3379
B
HOH
3383
2
HOH
HOH
3383
B
HOH
3386
2
HOH
HOH
3386
B
HOH
3387
2
HOH
HOH
3387
B
HOH
3391
2
HOH
HOH
3391
B
HOH
3392
2
HOH
HOH
3392
B
HOH
3393
2
HOH
HOH
3393
B
HOH
3394
2
HOH
HOH
3394
B
HOH
3401
2
HOH
HOH
3401
B
HOH
3409
2
HOH
HOH
3409
B
HOH
3410
2
HOH
HOH
3410
B
HOH
3412
2
HOH
HOH
3412
B
HOH
3422
2
HOH
HOH
3422
B
HOH
3423
2
HOH
HOH
3423
B
HOH
3425
2
HOH
HOH
3425
B
HOH
3428
2
HOH
HOH
3428
B
HOH
3429
2
HOH
HOH
3429
B
HOH
3430
2
HOH
HOH
3430
B
HOH
3433
2
HOH
HOH
3433
B
MSE
1
n
1
MSE
1
A
LYS
2
n
2
LYS
2
A
LEU
3
n
3
LEU
3
A
GLN
4
n
4
GLN
4
A
LEU
5
n
5
LEU
5
A
VAL
6
n
6
VAL
6
A
ALA
7
n
7
ALA
7
A
VAL
8
n
8
VAL
8
A
GLY
9
n
9
GLY
9
A
THR
10
n
10
THR
10
A
LYS
11
n
11
LYS
11
A
MSE
12
n
12
MSE
12
A
PRO
13
n
13
PRO
13
A
ASP
14
n
14
ASP
14
A
TRP
15
n
15
TRP
15
A
VAL
16
n
16
VAL
16
A
GLN
17
n
17
GLN
17
A
THR
18
n
18
THR
18
A
GLY
19
n
19
GLY
19
A
PHE
20
n
20
PHE
20
A
THR
21
n
21
THR
21
A
GLU
22
n
22
GLU
22
A
TYR
23
n
23
TYR
23
A
LEU
24
n
24
LEU
24
A
ARG
25
n
25
ARG
25
A
ARG
26
n
26
ARG
26
A
PHE
27
n
27
PHE
27
A
PRO
28
n
28
PRO
28
A
LYS
29
n
29
LYS
29
A
ASP
30
n
30
ASP
30
A
MSE
31
n
31
MSE
31
A
PRO
32
n
32
PRO
32
A
PHE
33
n
33
PHE
33
A
GLU
34
n
34
GLU
34
A
LEU
35
n
35
LEU
35
A
ILE
36
n
36
ILE
36
A
GLU
37
n
37
GLU
37
A
ILE
38
n
38
ILE
38
A
PRO
39
n
39
PRO
39
A
ALA
40
n
40
ALA
40
A
GLY
41
n
41
GLY
41
A
LYS
42
n
42
LYS
42
A
ARG
43
n
43
ARG
43
A
GLY
44
n
44
GLY
44
A
LYS
45
n
45
LYS
45
A
ASN
46
n
46
ASN
46
A
ALA
47
n
47
ALA
47
A
ASP
48
n
48
ASP
48
A
ILE
49
n
49
ILE
49
A
LYS
50
n
50
LYS
50
A
ARG
51
n
51
ARG
51
A
ILE
52
n
52
ILE
52
A
LEU
53
n
53
LEU
53
A
ASP
54
n
54
ASP
54
A
LYS
55
n
55
LYS
55
A
GLU
56
n
56
GLU
56
A
GLY
57
n
57
GLY
57
A
GLU
58
n
58
GLU
58
A
GLN
59
n
59
GLN
59
A
MSE
60
n
60
MSE
60
A
LEU
61
n
61
LEU
61
A
ALA
62
n
62
ALA
62
A
ALA
63
n
63
ALA
63
A
ALA
64
n
64
ALA
64
A
GLY
65
n
65
GLY
65
A
LYS
66
n
66
LYS
66
A
ASN
67
n
67
ASN
67
A
ARG
68
n
68
ARG
68
A
ILE
69
n
69
ILE
69
A
VAL
70
n
70
VAL
70
A
THR
71
n
71
THR
71
A
LEU
72
n
72
LEU
72
A
ASP
73
n
73
ASP
73
A
ILE
74
n
74
ILE
74
A
PRO
75
n
75
PRO
75
A
GLY
76
n
76
GLY
76
A
LYS
77
n
77
LYS
77
A
PRO
78
n
78
PRO
78
A
TRP
79
n
79
TRP
79
A
ASP
80
n
80
ASP
80
A
THR
81
n
81
THR
81
A
PRO
82
n
82
PRO
82
A
GLN
83
n
83
GLN
83
A
LEU
84
n
84
LEU
84
A
ALA
85
n
85
ALA
85
A
ALA
86
n
86
ALA
86
A
GLU
87
n
87
GLU
87
A
LEU
88
n
88
LEU
88
A
GLU
89
n
89
GLU
89
A
ARG
90
n
90
ARG
90
A
TRP
91
n
91
TRP
91
A
LYS
92
n
92
LYS
92
A
LEU
93
n
93
LEU
93
A
ASP
94
n
94
ASP
94
A
GLY
95
n
95
GLY
95
A
ARG
96
n
96
ARG
96
A
ASP
97
n
97
ASP
97
A
VAL
98
n
98
VAL
98
A
SER
99
n
99
SER
99
A
LEU
100
n
100
LEU
100
A
LEU
101
n
101
LEU
101
A
ILE
102
n
102
ILE
102
A
GLY
103
n
103
GLY
103
A
GLY
104
n
104
GLY
104
A
PRO
105
n
105
PRO
105
A
GLU
106
n
106
GLU
106
A
GLY
107
n
107
GLY
107
A
LEU
108
n
108
LEU
108
A
SER
109
n
109
SER
109
A
PRO
110
n
110
PRO
110
A
ALA
111
n
111
ALA
111
A
CYS
112
n
112
CYS
112
A
LYS
113
n
113
LYS
113
A
ALA
114
n
114
ALA
114
A
ALA
115
n
115
ALA
115
A
ALA
116
n
116
ALA
116
A
GLU
117
n
117
GLU
117
A
GLN
118
n
118
GLN
118
A
SER
119
n
119
SER
119
A
TRP
120
n
120
TRP
120
A
SER
121
n
121
SER
121
A
LEU
122
n
122
LEU
122
A
SER
123
n
123
SER
123
A
ALA
124
n
124
ALA
124
A
LEU
125
n
125
LEU
125
A
THR
126
n
126
THR
126
A
LEU
127
n
127
LEU
127
A
PRO
128
n
128
PRO
128
A
HIS
129
n
129
HIS
129
A
PRO
130
n
130
PRO
130
A
LEU
131
n
131
LEU
131
A
VAL
132
n
132
VAL
132
A
ARG
133
n
133
ARG
133
A
VAL
134
n
134
VAL
134
A
LEU
135
n
135
LEU
135
A
VAL
136
n
136
VAL
136
A
ALA
137
n
137
ALA
137
A
GLU
138
n
138
GLU
138
A
SER
139
n
139
SER
139
A
LEU
140
n
140
LEU
140
A
TYR
141
n
141
TYR
141
A
ARG
142
n
142
ARG
142
A
ALA
143
n
143
ALA
143
A
TRP
144
n
144
TRP
144
A
SER
145
n
145
SER
145
A
ILE
146
n
146
ILE
146
A
THR
147
n
147
THR
147
A
THR
148
n
148
THR
148
A
ASN
149
n
149
ASN
149
A
HIS
150
n
150
HIS
150
A
PRO
151
n
151
PRO
151
A
TYR
152
n
152
TYR
152
A
HIS
153
n
153
HIS
153
A
n
154
154
A
n
155
155
A
MSE
1
n
1
MSE
1
B
LYS
2
n
2
LYS
2
B
LEU
3
n
3
LEU
3
B
GLN
4
n
4
GLN
4
B
LEU
5
n
5
LEU
5
B
VAL
6
n
6
VAL
6
B
ALA
7
n
7
ALA
7
B
VAL
8
n
8
VAL
8
B
GLY
9
n
9
GLY
9
B
THR
10
n
10
THR
10
B
LYS
11
n
11
LYS
11
B
MSE
12
n
12
MSE
12
B
PRO
13
n
13
PRO
13
B
ASP
14
n
14
ASP
14
B
TRP
15
n
15
TRP
15
B
VAL
16
n
16
VAL
16
B
GLN
17
n
17
GLN
17
B
THR
18
n
18
THR
18
B
GLY
19
n
19
GLY
19
B
PHE
20
n
20
PHE
20
B
THR
21
n
21
THR
21
B
GLU
22
n
22
GLU
22
B
TYR
23
n
23
TYR
23
B
LEU
24
n
24
LEU
24
B
ARG
25
n
25
ARG
25
B
ARG
26
n
26
ARG
26
B
PHE
27
n
27
PHE
27
B
PRO
28
n
28
PRO
28
B
LYS
29
n
29
LYS
29
B
ASP
30
n
30
ASP
30
B
MSE
31
n
31
MSE
31
B
PRO
32
n
32
PRO
32
B
PHE
33
n
33
PHE
33
B
GLU
34
n
34
GLU
34
B
LEU
35
n
35
LEU
35
B
ILE
36
n
36
ILE
36
B
GLU
37
n
37
GLU
37
B
ILE
38
n
38
ILE
38
B
PRO
39
n
39
PRO
39
B
ALA
40
n
40
ALA
40
B
GLY
41
n
41
GLY
41
B
LYS
42
n
42
LYS
42
B
ARG
43
n
43
ARG
43
B
GLY
44
n
44
GLY
44
B
LYS
45
n
45
LYS
45
B
ASN
46
n
46
ASN
46
B
ALA
47
n
47
ALA
47
B
ASP
48
n
48
ASP
48
B
ILE
49
n
49
ILE
49
B
LYS
50
n
50
LYS
50
B
ARG
51
n
51
ARG
51
B
ILE
52
n
52
ILE
52
B
LEU
53
n
53
LEU
53
B
ASP
54
n
54
ASP
54
B
LYS
55
n
55
LYS
55
B
GLU
56
n
56
GLU
56
B
GLY
57
n
57
GLY
57
B
GLU
58
n
58
GLU
58
B
GLN
59
n
59
GLN
59
B
MSE
60
n
60
MSE
60
B
LEU
61
n
61
LEU
61
B
ALA
62
n
62
ALA
62
B
ALA
63
n
63
ALA
63
B
ALA
64
n
64
ALA
64
B
GLY
65
n
65
GLY
65
B
LYS
66
n
66
LYS
66
B
ASN
67
n
67
ASN
67
B
ARG
68
n
68
ARG
68
B
ILE
69
n
69
ILE
69
B
VAL
70
n
70
VAL
70
B
THR
71
n
71
THR
71
B
LEU
72
n
72
LEU
72
B
ASP
73
n
73
ASP
73
B
ILE
74
n
74
ILE
74
B
PRO
75
n
75
PRO
75
B
GLY
76
n
76
GLY
76
B
LYS
77
n
77
LYS
77
B
PRO
78
n
78
PRO
78
B
TRP
79
n
79
TRP
79
B
ASP
80
n
80
ASP
80
B
THR
81
n
81
THR
81
B
PRO
82
n
82
PRO
82
B
GLN
83
n
83
GLN
83
B
LEU
84
n
84
LEU
84
B
ALA
85
n
85
ALA
85
B
ALA
86
n
86
ALA
86
B
GLU
87
n
87
GLU
87
B
LEU
88
n
88
LEU
88
B
GLU
89
n
89
GLU
89
B
ARG
90
n
90
ARG
90
B
TRP
91
n
91
TRP
91
B
LYS
92
n
92
LYS
92
B
LEU
93
n
93
LEU
93
B
ASP
94
n
94
ASP
94
B
GLY
95
n
95
GLY
95
B
ARG
96
n
96
ARG
96
B
ASP
97
n
97
ASP
97
B
VAL
98
n
98
VAL
98
B
SER
99
n
99
SER
99
B
LEU
100
n
100
LEU
100
B
LEU
101
n
101
LEU
101
B
ILE
102
n
102
ILE
102
B
GLY
103
n
103
GLY
103
B
GLY
104
n
104
GLY
104
B
PRO
105
n
105
PRO
105
B
GLU
106
n
106
GLU
106
B
GLY
107
n
107
GLY
107
B
LEU
108
n
108
LEU
108
B
SER
109
n
109
SER
109
B
PRO
110
n
110
PRO
110
B
ALA
111
n
111
ALA
111
B
CYS
112
n
112
CYS
112
B
LYS
113
n
113
LYS
113
B
ALA
114
n
114
ALA
114
B
ALA
115
n
115
ALA
115
B
ALA
116
n
116
ALA
116
B
GLU
117
n
117
GLU
117
B
GLN
118
n
118
GLN
118
B
SER
119
n
119
SER
119
B
TRP
120
n
120
TRP
120
B
SER
121
n
121
SER
121
B
LEU
122
n
122
LEU
122
B
SER
123
n
123
SER
123
B
ALA
124
n
124
ALA
124
B
LEU
125
n
125
LEU
125
B
THR
126
n
126
THR
126
B
LEU
127
n
127
LEU
127
B
PRO
128
n
128
PRO
128
B
HIS
129
n
129
HIS
129
B
PRO
130
n
130
PRO
130
B
LEU
131
n
131
LEU
131
B
VAL
132
n
132
VAL
132
B
ARG
133
n
133
ARG
133
B
VAL
134
n
134
VAL
134
B
LEU
135
n
135
LEU
135
B
VAL
136
n
136
VAL
136
B
ALA
137
n
137
ALA
137
B
GLU
138
n
138
GLU
138
B
SER
139
n
139
SER
139
B
LEU
140
n
140
LEU
140
B
TYR
141
n
141
TYR
141
B
ARG
142
n
142
ARG
142
B
ALA
143
n
143
ALA
143
B
TRP
144
n
144
TRP
144
B
SER
145
n
145
SER
145
B
ILE
146
n
146
ILE
146
B
THR
147
n
147
THR
147
B
THR
148
n
148
THR
148
B
ASN
149
n
149
ASN
149
B
HIS
150
n
150
HIS
150
B
PRO
151
n
151
PRO
151
B
TYR
152
n
152
TYR
152
B
HIS
153
n
153
HIS
153
B
ARG
154
n
154
ARG
154
B
GLU
155
n
155
GLU
155
B
author_and_software_defined_assembly
PISA
2
dimeric
2220
-18
14780
A
MSE
1
SELENOMETHIONINE
A
MSE
1
MET
A
MSE
12
SELENOMETHIONINE
A
MSE
12
MET
A
MSE
31
SELENOMETHIONINE
A
MSE
31
MET
A
MSE
60
SELENOMETHIONINE
A
MSE
60
MET
B
MSE
1
SELENOMETHIONINE
B
MSE
1
MET
B
MSE
12
SELENOMETHIONINE
B
MSE
12
MET
B
MSE
31
SELENOMETHIONINE
B
MSE
31
MET
B
MSE
60
SELENOMETHIONINE
B
MSE
60
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLU
34
A
O
GLU
34
A
N
LEU
5
A
N
LEU
5
A
N
VAL
6
A
N
VAL
6
A
O
LEU
100
A
O
LEU
100
A
O
SER
99
A
O
SER
99
A
N
ARG
68
A
N
ARG
68
A
N
THR
71
A
N
THR
71
A
O
TRP
120
A
O
TRP
120
B
O
GLU
34
B
O
GLU
34
B
N
LEU
5
B
N
LEU
5
B
N
GLN
4
B
N
GLN
4
B
O
VAL
98
B
O
VAL
98
B
O
SER
99
B
O
SER
99
B
N
ARG
68
B
N
ARG
68
B
N
THR
71
B
N
THR
71
B
O
TRP
120
B
O
TRP
120
1
A
ARG
154
A
ARG
154
1
Y
1
A
GLU
155
A
GLU
155
1
Y
1
A
B
O
O
HOH
HOH
3419
3336
2.00
1
B
B
O
O
HOH
HOH
3035
3370
2.14
1
A
A
OE1
O
GLU
HOH
89
3171
2.16
1
8.65
0.90
118.30
126.95
A
A
A
CB
CG
OD2
ASP
ASP
ASP
14
14
14
N
1
-3.07
0.50
120.30
117.23
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
25
25
25
N
1
5.76
0.90
118.30
124.06
B
B
B
CB
CG
OD2
ASP
ASP
ASP
30
30
30
N
1
8.02
0.90
118.30
126.32
B
B
B
CB
CG
OD2
ASP
ASP
ASP
73
73
73
N
1
8.00
0.50
120.30
128.30
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
133
133
133
N
1
-6.03
0.50
120.30
114.27
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
133
133
133
N
1
3.19
0.50
120.30
123.49
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
154
154
154
N
1
A
B
ND1
O
HIS
HOH
150
3370
2.19
1_555
1_455
14.014
-0.28000
0.00000
0.13000
-0.07000
0.00000
0.41000
0.962
0.932
0.213
0.145
0.145
1.68
20.00
1675
31194
5.100
98.8
1.838
0.064
RANDOM
1
THROUGHOUT
0
MAD
0.180
0.110
ENGH & HUBER
BABINET MODEL WITH MASK
0.110
0.176
5.0
1.68
20.00
409
2832
0
0
2423
0.023
1.905
1.825
1.500
2.681
2.000
4.405
3.000
6.268
4.500
0.26
0.111
1.72
148
2271
20
22.0
1.68
20
1NS5
33226
-3
0.114
1
7.58
100.0
0.114
1.68
1.73
99.9
refinement
CNS
1.1
data collection
CBASS
data scaling
SCALEPACK
phasing
SOLVE
phasing
RESOLVE
refinement
REFMAC
5.1.19
Hypothetical protein ybeA
X-RAY STRUCTURE OF YBEA FROM E.COLI. NORTHEAST STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NESG) TARGET ER45
1
N
N
1
N
N
2
N
N
2
N
N
A
PRO
13
A
PRO
13
HELX_P
A
ARG
25
A
ARG
25
1
1
13
A
ASP
48
A
ASP
48
HELX_P
A
GLY
65
A
GLY
65
1
2
18
A
ASP
80
A
ASP
80
HELX_P
A
GLY
95
A
GLY
95
1
3
16
A
SER
109
A
SER
109
HELX_P
A
ALA
116
A
ALA
116
1
4
8
A
PRO
128
A
PRO
128
HELX_P
A
THR
148
A
THR
148
1
5
21
B
PRO
13
B
PRO
13
HELX_P
B
ARG
25
B
ARG
25
1
6
13
B
ASP
48
B
ASP
48
HELX_P
B
GLY
65
B
GLY
65
1
7
18
B
ASP
80
B
ASP
80
HELX_P
B
LEU
93
B
LEU
93
1
8
14
B
SER
109
B
SER
109
HELX_P
B
ALA
116
B
ALA
116
1
9
8
B
PRO
128
B
PRO
128
HELX_P
B
THR
148
B
THR
148
1
10
21
covale
1.321
both
A
MSE
1
A
C
MSE
1
1_555
A
LYS
2
A
N
LYS
2
1_555
covale
1.335
both
A
LYS
11
A
C
LYS
11
1_555
A
MSE
12
A
N
MSE
12
1_555
covale
1.325
both
A
MSE
12
A
C
MSE
12
1_555
A
PRO
13
A
N
PRO
13
1_555
covale
1.348
both
A
ASP
30
A
C
ASP
30
1_555
A
MSE
31
A
N
MSE
31
1_555
covale
1.292
both
A
MSE
31
A
C
MSE
31
1_555
A
PRO
32
A
N
PRO
32
1_555
covale
1.327
both
A
GLN
59
A
C
GLN
59
1_555
A
MSE
60
A
N
MSE
60
1_555
covale
1.325
both
A
MSE
60
A
C
MSE
60
1_555
A
LEU
61
A
N
LEU
61
1_555
covale
1.325
both
B
MSE
1
B
C
MSE
1
1_555
B
LYS
2
B
N
LYS
2
1_555
covale
1.323
both
B
LYS
11
B
C
LYS
11
1_555
B
MSE
12
B
N
MSE
12
1_555
covale
1.333
both
B
MSE
12
B
C
MSE
12
1_555
B
PRO
13
B
N
PRO
13
1_555
covale
1.337
both
B
ASP
30
B
C
ASP
30
1_555
B
MSE
31
B
N
MSE
31
1_555
covale
1.324
both
B
MSE
31
B
C
MSE
31
1_555
B
PRO
32
B
N
PRO
32
1_555
covale
1.344
both
B
GLN
59
B
C
GLN
59
1_555
B
MSE
60
B
N
MSE
60
1_555
covale
1.317
both
B
MSE
60
B
C
MSE
60
1_555
B
LEU
61
B
N
LEU
61
1_555
Structural Genomics, Unknown Function
Structural Genomics, PSI, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, Unknown Function
YBEA_ECOLI
UNP
1
1
P0A8I8
MKLQLVAVGTKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRGKNADIKRILDKEGEQMLAAAGKNRIVTLDIPGKPWD
TPQLAAELERWKLDGRDVSLLIGGPEGLSPACKAAAEQSWSLSALTLPHPLVRVLVAESLYRAWSITTNHPYHRE
1
155
1NS5
1
155
P0A8I8
A
1
1
155
1
155
1NS5
1
155
P0A8I8
B
1
1
155
1
MET
MODIFIED RESIDUE
MSE
1
1NS5
A
P0A8I8
UNP
1
1
1
MET
MODIFIED RESIDUE
MSE
12
1NS5
A
P0A8I8
UNP
12
12
1
MET
MODIFIED RESIDUE
MSE
31
1NS5
A
P0A8I8
UNP
31
31
1
MET
MODIFIED RESIDUE
MSE
60
1NS5
A
P0A8I8
UNP
60
60
2
MET
MODIFIED RESIDUE
MSE
1
1NS5
B
P0A8I8
UNP
1
1
2
MET
MODIFIED RESIDUE
MSE
12
1NS5
B
P0A8I8
UNP
12
12
2
MET
MODIFIED RESIDUE
MSE
31
1NS5
B
P0A8I8
UNP
31
31
2
MET
MODIFIED RESIDUE
MSE
60
1NS5
B
P0A8I8
UNP
60
60
5
5
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
PHE
33
A
PHE
33
A
ILE
38
A
ILE
38
A
LEU
3
A
LEU
3
A
VAL
8
A
VAL
8
A
VAL
98
A
VAL
98
A
ILE
102
A
ILE
102
A
ARG
68
A
ARG
68
A
LEU
72
A
LEU
72
A
GLN
118
A
GLN
118
A
TRP
120
A
TRP
120
B
PHE
33
B
PHE
33
B
ILE
38
B
ILE
38
B
LEU
3
B
LEU
3
B
VAL
8
B
VAL
8
B
VAL
98
B
VAL
98
B
ILE
102
B
ILE
102
B
ARG
68
B
ARG
68
B
LEU
72
B
LEU
72
B
GLN
118
B
GLN
118
B
TRP
120
B
TRP
120
4
P 1 21 1