0.014065
0.000000
0.002708
0.000000
0.013870
0.000000
0.000000
0.000000
0.013912
0.00000
0.00000
0.00000
Nantermet, P.G.
Barrow, J.C.
Newton, C.L.
Pellicore, J.M.
Young, M.
Lewis, S.D.
Lucas, B.J.
Krueger, J.A.
McMasters, D.R.
Yan, Y.
Kuo, L.C.
Vacca, J.P.
Selnick, H.G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.0
100.9
90.0
71.1
72.1
73.2
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C25 H33 Cl N4 O5
505.006
(6R,21AS)-17-CHLORO-6-CYCLOHEXYL-2,3,6,7,10,11,19,20-OCTAHYDRO-1H,5H-PYRROLO[1,2-K][1,4,8,11,14]BENZOXATETRAAZA-CYCLOHEPTADECINE-5,8,12,21(9H,13H,21AH)-TETRONE
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H11 N O6 S
261.252
n
O-SULFO-L-TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Bioorg.Med.Chem.Lett.
BMCLE8
1127
0960-894X
13
2781
2784
10.1016/S0960-894X(03)00506-7
12873514
Design and synthesis of potent and selective macrocyclic thrombin inhibitors
2003
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298
1
IMAGE PLATE
1999-07-27
RIGAKU RAXIS II
Yale Mirrors
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
33079.965
thrombin
3.4.21.5
1
nat
polymer
10 AA HIRUDIN ANALOGUE
1376.441
Hirudin
1
syn
polymer
505.006
(6R,21AS)-17-CHLORO-6-CYCLOHEXYL-2,3,6,7,10,11,19,20-OCTAHYDRO-1H,5H-PYRROLO[1,2-K][1,4,8,11,14]BENZOXATETRAAZA-CYCLOHEPTADECINE-5,8,12,21(9H,13H,21AH)-TETRONE
1
syn
non-polymer
18.015
water
143
nat
water
Coagulation factor II
E.C.3.4.21.5
no
no
DCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWD
KNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQ
AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVM
KSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFG
DCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWD
KNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQ
AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVM
KSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFG
A
polypeptide(L)
no
yes
DFEEIPEA(TYS)LA
DFEEIPEAYLA
H
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
9606
plasma from blood
Homo sapiens
1
2.67
53.97
VAPOR DIFFUSION, HANGING DROP
7.3
PEG 8000, sodium phosphate, pH 7.3, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
software
repository
Initial release
Version format compliance
Atomic model
Database references
Derived calculations
Non-polymer description
Structure summary
Version format compliance
Refinement description
1
0
2003-09-02
1
1
2008-04-29
1
2
2011-07-13
1
3
2017-10-11
RCSB
Y
RCSB
2003-01-28
REL
T76
(6R,21AS)-17-CHLORO-6-CYCLOHEXYL-2,3,6,7,10,11,19,20-OCTAHYDRO-1H,5H-PYRROLO[1,2-K][1,4,8,11,14]BENZOXATETRAAZA-CYCLOHEPTADECINE-5,8,12,21(9H,13H,21AH)-TETRONE
HOH
water
T76
1
3
T76
T76
247
A
HOH
602
4
HOH
HOH
602
A
HOH
603
4
HOH
HOH
603
A
HOH
604
4
HOH
HOH
604
A
HOH
605
4
HOH
HOH
605
A
HOH
606
4
HOH
HOH
606
A
HOH
607
4
HOH
HOH
607
A
HOH
608
4
HOH
HOH
608
A
HOH
609
4
HOH
HOH
609
A
HOH
610
4
HOH
HOH
610
A
HOH
611
4
HOH
HOH
611
A
HOH
612
4
HOH
HOH
612
A
HOH
613
4
HOH
HOH
613
A
HOH
614
4
HOH
HOH
614
A
HOH
615
4
HOH
HOH
615
A
HOH
616
4
HOH
HOH
616
A
HOH
617
4
HOH
HOH
617
A
HOH
618
4
HOH
HOH
618
A
HOH
619
4
HOH
HOH
619
A
HOH
620
4
HOH
HOH
620
A
HOH
621
4
HOH
HOH
621
A
HOH
622
4
HOH
HOH
622
A
HOH
623
4
HOH
HOH
623
A
HOH
624
4
HOH
HOH
624
A
HOH
625
4
HOH
HOH
625
A
HOH
626
4
HOH
HOH
626
A
HOH
627
4
HOH
HOH
627
A
HOH
628
4
HOH
HOH
628
A
HOH
629
4
HOH
HOH
629
A
HOH
630
4
HOH
HOH
630
A
HOH
631
4
HOH
HOH
631
A
HOH
632
4
HOH
HOH
632
A
HOH
633
4
HOH
HOH
633
A
HOH
634
4
HOH
HOH
634
A
HOH
635
4
HOH
HOH
635
A
HOH
636
4
HOH
HOH
636
A
HOH
637
4
HOH
HOH
637
A
HOH
638
4
HOH
HOH
638
A
HOH
639
4
HOH
HOH
639
A
HOH
641
4
HOH
HOH
641
A
HOH
644
4
HOH
HOH
644
A
HOH
645
4
HOH
HOH
645
A
HOH
646
4
HOH
HOH
646
A
HOH
648
4
HOH
HOH
648
A
HOH
649
4
HOH
HOH
649
A
HOH
650
4
HOH
HOH
650
A
HOH
652
4
HOH
HOH
652
A
HOH
653
4
HOH
HOH
653
A
HOH
654
4
HOH
HOH
654
A
HOH
657
4
HOH
HOH
657
A
HOH
658
4
HOH
HOH
658
A
HOH
660
4
HOH
HOH
660
A
HOH
661
4
HOH
HOH
661
A
HOH
662
4
HOH
HOH
662
A
HOH
663
4
HOH
HOH
663
A
HOH
664
4
HOH
HOH
664
A
HOH
666
4
HOH
HOH
666
A
HOH
672
4
HOH
HOH
672
A
HOH
675
4
HOH
HOH
675
A
HOH
677
4
HOH
HOH
677
A
HOH
678
4
HOH
HOH
678
A
HOH
680
4
HOH
HOH
680
A
HOH
681
4
HOH
HOH
681
A
HOH
683
4
HOH
HOH
683
A
HOH
689
4
HOH
HOH
689
A
HOH
690
4
HOH
HOH
690
A
HOH
691
4
HOH
HOH
691
A
HOH
693
4
HOH
HOH
693
A
HOH
701
4
HOH
HOH
701
A
HOH
703
4
HOH
HOH
703
A
HOH
705
4
HOH
HOH
705
A
HOH
706
4
HOH
HOH
706
A
HOH
708
4
HOH
HOH
708
A
HOH
709
4
HOH
HOH
709
A
HOH
711
4
HOH
HOH
711
A
HOH
714
4
HOH
HOH
714
A
HOH
721
4
HOH
HOH
721
A
HOH
726
4
HOH
HOH
726
A
HOH
728
4
HOH
HOH
728
A
HOH
729
4
HOH
HOH
729
A
HOH
732
4
HOH
HOH
732
A
HOH
735
4
HOH
HOH
735
A
HOH
741
4
HOH
HOH
741
A
HOH
745
4
HOH
HOH
745
A
HOH
746
4
HOH
HOH
746
A
HOH
753
4
HOH
HOH
753
A
HOH
755
4
HOH
HOH
755
A
HOH
759
4
HOH
HOH
759
A
HOH
760
4
HOH
HOH
760
A
HOH
765
4
HOH
HOH
765
A
HOH
766
4
HOH
HOH
766
A
HOH
770
4
HOH
HOH
770
A
HOH
772
4
HOH
HOH
772
A
HOH
773
4
HOH
HOH
773
A
HOH
779
4
HOH
HOH
779
A
HOH
785
4
HOH
HOH
785
A
HOH
786
4
HOH
HOH
786
A
HOH
790
4
HOH
HOH
790
A
HOH
791
4
HOH
HOH
791
A
HOH
792
4
HOH
HOH
792
A
HOH
794
4
HOH
HOH
794
A
HOH
795
4
HOH
HOH
795
A
HOH
796
4
HOH
HOH
796
A
HOH
802
4
HOH
HOH
802
A
HOH
806
4
HOH
HOH
806
A
HOH
808
4
HOH
HOH
808
A
HOH
813
4
HOH
HOH
813
A
HOH
814
4
HOH
HOH
814
A
HOH
818
4
HOH
HOH
818
A
HOH
820
4
HOH
HOH
820
A
HOH
851
4
HOH
HOH
851
A
HOH
864
4
HOH
HOH
864
A
HOH
874
4
HOH
HOH
874
A
HOH
875
4
HOH
HOH
875
A
HOH
888
4
HOH
HOH
888
A
HOH
889
4
HOH
HOH
889
A
HOH
891
4
HOH
HOH
891
A
HOH
892
4
HOH
HOH
892
A
HOH
893
4
HOH
HOH
893
A
HOH
896
4
HOH
HOH
896
A
HOH
901
4
HOH
HOH
901
A
HOH
914
4
HOH
HOH
914
A
HOH
915
4
HOH
HOH
915
A
HOH
916
4
HOH
HOH
916
A
HOH
917
4
HOH
HOH
917
A
HOH
918
4
HOH
HOH
918
A
HOH
920
4
HOH
HOH
920
A
HOH
923
4
HOH
HOH
923
A
HOH
924
4
HOH
HOH
924
A
HOH
925
4
HOH
HOH
925
A
HOH
926
4
HOH
HOH
926
A
HOH
927
4
HOH
HOH
927
A
HOH
928
4
HOH
HOH
928
A
HOH
930
4
HOH
HOH
930
A
HOH
931
4
HOH
HOH
931
A
HOH
932
4
HOH
HOH
932
A
HOH
933
4
HOH
HOH
933
A
HOH
934
4
HOH
HOH
934
A
HOH
935
4
HOH
HOH
935
A
HOH
937
4
HOH
HOH
937
A
HOH
941
4
HOH
HOH
941
A
HOH
942
4
HOH
HOH
942
A
HOH
671
4
HOH
HOH
671
H
HOH
762
4
HOH
HOH
762
H
ASP
1
n
1
ASP
1
A
CYS
1
n
2
A
CYS
1
A
GLY
2
n
3
GLY
2
A
LEU
3
n
4
LEU
3
A
ARG
4
n
5
ARG
4
A
PRO
5
n
6
PRO
5
A
LEU
6
n
7
LEU
6
A
PHE
7
n
8
PHE
7
A
GLU
8
n
9
GLU
8
A
LYS
9
n
10
LYS
9
A
LYS
10
n
11
LYS
10
A
SER
11
n
12
SER
11
A
LEU
12
n
13
LEU
12
A
GLU
13
n
14
GLU
13
A
ASP
14
n
15
ASP
14
A
LYS
14
n
16
A
LYS
14
A
THR
14
n
17
B
THR
14
A
GLU
14
n
18
C
GLU
14
A
ARG
14
n
19
D
ARG
14
A
GLU
14
n
20
E
GLU
14
A
LEU
14
n
21
F
LEU
14
A
LEU
14
n
22
G
LEU
14
A
GLU
14
n
23
H
GLU
14
A
SER
14
n
24
I
SER
14
A
TYR
14
n
25
J
TYR
14
A
ILE
14
n
26
K
ILE
14
A
n
27
L
14
A
n
28
M
14
A
n
29
15
A
ILE
16
n
30
ILE
16
A
VAL
17
n
31
VAL
17
A
GLU
18
n
32
GLU
18
A
GLY
19
n
33
GLY
19
A
SER
20
n
34
SER
20
A
ASP
21
n
35
ASP
21
A
ALA
22
n
36
ALA
22
A
GLU
23
n
37
GLU
23
A
ILE
24
n
38
ILE
24
A
GLY
25
n
39
GLY
25
A
MET
26
n
40
MET
26
A
SER
27
n
41
SER
27
A
PRO
28
n
42
PRO
28
A
TRP
29
n
43
TRP
29
A
GLN
30
n
44
GLN
30
A
VAL
31
n
45
VAL
31
A
MET
32
n
46
MET
32
A
LEU
33
n
47
LEU
33
A
PHE
34
n
48
PHE
34
A
ARG
35
n
49
ARG
35
A
LYS
36
n
50
LYS
36
A
SER
36
n
51
A
SER
36
A
PRO
37
n
52
PRO
37
A
GLN
38
n
53
GLN
38
A
GLU
39
n
54
GLU
39
A
LEU
40
n
55
LEU
40
A
LEU
41
n
56
LEU
41
A
CYS
42
n
57
CYS
42
A
GLY
43
n
58
GLY
43
A
ALA
44
n
59
ALA
44
A
SER
45
n
60
SER
45
A
LEU
46
n
61
LEU
46
A
ILE
47
n
62
ILE
47
A
SER
48
n
63
SER
48
A
ASP
49
n
64
ASP
49
A
ARG
50
n
65
ARG
50
A
TRP
51
n
66
TRP
51
A
VAL
52
n
67
VAL
52
A
LEU
53
n
68
LEU
53
A
THR
54
n
69
THR
54
A
ALA
55
n
70
ALA
55
A
ALA
56
n
71
ALA
56
A
HIS
57
n
72
HIS
57
A
CYS
58
n
73
CYS
58
A
LEU
59
n
74
LEU
59
A
LEU
60
n
75
LEU
60
A
TYR
60
n
76
A
TYR
60
A
PRO
60
n
77
B
PRO
60
A
PRO
60
n
78
C
PRO
60
A
TRP
60
n
79
D
TRP
60
A
ASP
60
n
80
E
ASP
60
A
LYS
60
n
81
F
LYS
60
A
ASN
60
n
82
G
ASN
60
A
PHE
60
n
83
H
PHE
60
A
THR
60
n
84
I
THR
60
A
GLU
61
n
85
GLU
61
A
ASN
62
n
86
ASN
62
A
ASP
63
n
87
ASP
63
A
LEU
64
n
88
LEU
64
A
LEU
65
n
89
LEU
65
A
VAL
66
n
90
VAL
66
A
ARG
67
n
91
ARG
67
A
ILE
68
n
92
ILE
68
A
GLY
69
n
93
GLY
69
A
LYS
70
n
94
LYS
70
A
HIS
71
n
95
HIS
71
A
SER
72
n
96
SER
72
A
ARG
73
n
97
ARG
73
A
THR
74
n
98
THR
74
A
ARG
75
n
99
ARG
75
A
TYR
76
n
100
TYR
76
A
GLU
77
n
101
GLU
77
A
ARG
77
n
102
A
ARG
77
A
ASN
78
n
103
ASN
78
A
ILE
79
n
104
ILE
79
A
GLU
80
n
105
GLU
80
A
LYS
81
n
106
LYS
81
A
ILE
82
n
107
ILE
82
A
SER
83
n
108
SER
83
A
MET
84
n
109
MET
84
A
LEU
85
n
110
LEU
85
A
GLU
86
n
111
GLU
86
A
LYS
87
n
112
LYS
87
A
ILE
88
n
113
ILE
88
A
TYR
89
n
114
TYR
89
A
ILE
90
n
115
ILE
90
A
HIS
91
n
116
HIS
91
A
PRO
92
n
117
PRO
92
A
ARG
93
n
118
ARG
93
A
TYR
94
n
119
TYR
94
A
ASN
95
n
120
ASN
95
A
TRP
96
n
121
TRP
96
A
ARG
97
n
122
ARG
97
A
GLU
97
n
123
A
GLU
97
A
ASN
98
n
124
ASN
98
A
LEU
99
n
125
LEU
99
A
ASP
100
n
126
ASP
100
A
ARG
101
n
127
ARG
101
A
ASP
102
n
128
ASP
102
A
ILE
103
n
129
ILE
103
A
ALA
104
n
130
ALA
104
A
LEU
105
n
131
LEU
105
A
MET
106
n
132
MET
106
A
LYS
107
n
133
LYS
107
A
LEU
108
n
134
LEU
108
A
LYS
109
n
135
LYS
109
A
LYS
110
n
136
LYS
110
A
PRO
111
n
137
PRO
111
A
VAL
112
n
138
VAL
112
A
ALA
113
n
139
ALA
113
A
PHE
114
n
140
PHE
114
A
SER
115
n
141
SER
115
A
ASP
116
n
142
ASP
116
A
TYR
117
n
143
TYR
117
A
ILE
118
n
144
ILE
118
A
HIS
119
n
145
HIS
119
A
PRO
120
n
146
PRO
120
A
VAL
121
n
147
VAL
121
A
CYS
122
n
148
CYS
122
A
LEU
123
n
149
LEU
123
A
PRO
124
n
150
PRO
124
A
ASP
125
n
151
ASP
125
A
ARG
126
n
152
ARG
126
A
GLU
127
n
153
GLU
127
A
THR
128
n
154
THR
128
A
ALA
129
n
155
ALA
129
A
ALA
129
n
156
A
ALA
129
A
SER
129
n
157
B
SER
129
A
LEU
129
n
158
C
LEU
129
A
LEU
130
n
159
LEU
130
A
GLN
131
n
160
GLN
131
A
ALA
132
n
161
ALA
132
A
GLY
133
n
162
GLY
133
A
TYR
134
n
163
TYR
134
A
LYS
135
n
164
LYS
135
A
GLY
136
n
165
GLY
136
A
ARG
137
n
166
ARG
137
A
VAL
138
n
167
VAL
138
A
THR
139
n
168
THR
139
A
GLY
140
n
169
GLY
140
A
TRP
141
n
170
TRP
141
A
GLY
142
n
171
GLY
142
A
ASN
143
n
172
ASN
143
A
LEU
144
n
173
LEU
144
A
LYS
145
n
174
LYS
145
A
GLU
146
n
175
GLU
146
A
n
176
A
146
A
n
177
B
146
A
n
178
C
146
A
n
179
D
146
A
n
180
E
146
A
n
181
F
146
A
n
182
G
146
A
n
183
H
146
A
GLY
150
n
184
GLY
150
A
GLN
151
n
185
GLN
151
A
PRO
152
n
186
PRO
152
A
SER
153
n
187
SER
153
A
VAL
154
n
188
VAL
154
A
LEU
155
n
189
LEU
155
A
GLN
156
n
190
GLN
156
A
VAL
157
n
191
VAL
157
A
VAL
158
n
192
VAL
158
A
ASN
159
n
193
ASN
159
A
LEU
160
n
194
LEU
160
A
PRO
161
n
195
PRO
161
A
ILE
162
n
196
ILE
162
A
VAL
163
n
197
VAL
163
A
GLU
164
n
198
GLU
164
A
ARG
165
n
199
ARG
165
A
PRO
166
n
200
PRO
166
A
VAL
167
n
201
VAL
167
A
CYS
168
n
202
CYS
168
A
LYS
169
n
203
LYS
169
A
ASP
170
n
204
ASP
170
A
SER
171
n
205
SER
171
A
THR
172
n
206
THR
172
A
ARG
173
n
207
ARG
173
A
ILE
174
n
208
ILE
174
A
ARG
175
n
209
ARG
175
A
ILE
176
n
210
ILE
176
A
THR
177
n
211
THR
177
A
ASP
178
n
212
ASP
178
A
ASN
179
n
213
ASN
179
A
MET
180
n
214
MET
180
A
PHE
181
n
215
PHE
181
A
CYS
182
n
216
CYS
182
A
ALA
183
n
217
ALA
183
A
GLY
184
n
218
GLY
184
A
TYR
184
n
219
A
TYR
184
A
LYS
185
n
220
LYS
185
A
PRO
186
n
221
PRO
186
A
ASP
186
n
222
A
ASP
186
A
GLU
186
n
223
B
GLU
186
A
GLY
186
n
224
C
GLY
186
A
LYS
186
n
225
D
LYS
186
A
ARG
187
n
226
ARG
187
A
GLY
188
n
227
GLY
188
A
ASP
189
n
228
ASP
189
A
ALA
190
n
229
ALA
190
A
CYS
191
n
230
CYS
191
A
GLU
192
n
231
GLU
192
A
GLY
193
n
232
GLY
193
A
ASP
194
n
233
ASP
194
A
SER
195
n
234
SER
195
A
GLY
196
n
235
GLY
196
A
GLY
197
n
236
GLY
197
A
PRO
198
n
237
PRO
198
A
PHE
199
n
238
PHE
199
A
VAL
200
n
239
VAL
200
A
MET
201
n
240
MET
201
A
LYS
202
n
241
LYS
202
A
SER
203
n
242
SER
203
A
PRO
204
n
243
PRO
204
A
PHE
204
n
244
A
PHE
204
A
ASN
204
n
245
B
ASN
204
A
ASN
205
n
246
ASN
205
A
ARG
206
n
247
ARG
206
A
TRP
207
n
248
TRP
207
A
TYR
208
n
249
TYR
208
A
GLN
209
n
250
GLN
209
A
MET
210
n
251
MET
210
A
GLY
211
n
252
GLY
211
A
ILE
212
n
253
ILE
212
A
VAL
213
n
254
VAL
213
A
SER
214
n
255
SER
214
A
TRP
215
n
256
TRP
215
A
GLY
216
n
257
GLY
216
A
GLU
217
n
258
GLU
217
A
GLY
219
n
259
GLY
219
A
CYS
220
n
260
CYS
220
A
ASP
221
n
261
ASP
221
A
ARG
221
n
262
A
ARG
221
A
ASP
222
n
263
ASP
222
A
GLY
223
n
264
GLY
223
A
LYS
224
n
265
LYS
224
A
TYR
225
n
266
TYR
225
A
GLY
226
n
267
GLY
226
A
PHE
227
n
268
PHE
227
A
TYR
228
n
269
TYR
228
A
THR
229
n
270
THR
229
A
HIS
230
n
271
HIS
230
A
VAL
231
n
272
VAL
231
A
PHE
232
n
273
PHE
232
A
ARG
233
n
274
ARG
233
A
LEU
234
n
275
LEU
234
A
LYS
235
n
276
LYS
235
A
LYS
236
n
277
LYS
236
A
TRP
237
n
278
TRP
237
A
ILE
238
n
279
ILE
238
A
GLN
239
n
280
GLN
239
A
LYS
240
n
281
LYS
240
A
VAL
241
n
282
VAL
241
A
ILE
242
n
283
ILE
242
A
ASP
243
n
284
ASP
243
A
GLN
244
n
285
GLN
244
A
PHE
245
n
286
PHE
245
A
GLY
246
n
287
GLY
246
A
ASP
355
n
1
ASP
355
H
PHE
356
n
2
PHE
356
H
GLU
357
n
3
GLU
357
H
GLU
358
n
4
GLU
358
H
ILE
359
n
5
ILE
359
H
PRO
360
n
6
PRO
360
H
GLU
361
n
7
GLU
361
H
ALA
362
n
8
ALA
362
H
TYS
363
n
9
TYS
363
H
LEU
364
n
10
LEU
364
H
ALA
365
n
11
ALA
365
H
author_defined_assembly
2
dimeric
H
TYS
363
O-SULFO-L-TYROSINE
B
TYS
9
TYR
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
SER
20
A
N
SER
34
A
O
VAL
157
A
O
VAL
191
A
O
LEU
160
A
O
LEU
194
A
N
GLY
136
A
N
GLY
165
A
N
ARG
137
A
N
ARG
166
A
O
VAL
200
A
O
VAL
239
A
N
MET
201
A
N
MET
240
A
O
TYR
208
A
O
TYR
249
A
N
TRP
215
A
N
TRP
256
A
O
PHE
227
A
O
PHE
268
A
O
TYR
228
A
O
TYR
269
A
N
PHE
181
A
N
PHE
215
A
N
LEU
33
A
N
LEU
47
A
O
CYS
42
A
O
CYS
57
A
N
SER
45
A
N
SER
60
A
O
LEU
53
A
O
LEU
68
A
N
THR
54
A
N
THR
69
A
O
ALA
104
A
O
ALA
130
A
O
LEU
105
A
O
LEU
131
A
N
TYR
89
A
N
TYR
114
A
O
LYS
81
A
O
LYS
106
A
N
ILE
68
A
N
ILE
92
A
O
LEU
65
A
O
LEU
89
A
N
PHE
34
A
N
PHE
48
K
1
A
CG1
ILE
14
A
CG1
ILE
26
1
Y
K
1
A
CG2
ILE
14
A
CG2
ILE
26
1
Y
K
1
A
CD1
ILE
14
A
CD1
ILE
26
1
Y
1
A
CG
LYS
236
A
CG
LYS
277
1
Y
1
A
CD
LYS
236
A
CD
LYS
277
1
Y
1
A
CE
LYS
236
A
CE
LYS
277
1
Y
1
A
NZ
LYS
236
A
NZ
LYS
277
1
Y
L
1
A
ASP
14
A
ASP
27
1
Y
M
1
A
GLY
14
A
GLY
28
1
Y
1
A
ARG
15
A
ARG
29
1
Y
A
1
A
THR
146
A
THR
176
1
Y
B
1
A
TRP
146
A
TRP
177
1
Y
C
1
A
THR
146
A
THR
178
1
Y
D
1
A
ALA
146
A
ALA
179
1
Y
E
1
A
ASN
146
A
ASN
180
1
Y
F
1
A
VAL
146
A
VAL
181
1
Y
G
1
A
GLY
146
A
GLY
182
1
Y
H
1
A
LYS
146
A
LYS
183
1
Y
1
A
PHE
7
-129.31
-88.89
A
1
A
TYR
60
-156.18
82.57
G
1
A
ASN
60
-161.54
75.94
1
A
HIS
71
-134.03
-56.48
1
A
ASN
78
78.17
-10.79
0.19
0.191
0.191
2.00
6.0
17234
17234
random
1
THROUGHOUT
0.0
0.0
FOURIER SYNTHESIS
2.00
6.0
143
2506
35
0
2328
0.009
2.09
2.0
50.
1NT1
19664
0.07
1
80.0
data scaling
SCALEPACK
model building
X-PLOR
refinement
X-PLOR
3.1
phasing
X-PLOR
thrombin (E.C.3.4.21.5)/hirugen complex
thrombin in complex with selective macrocyclic inhibitor
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
A
PHE
7
A
PHE
8
HELX_P
A
SER
11
A
SER
12
5
1
5
A
THR
14
A
THR
17
HELX_P
A
GLU
14
A
GLU
23
1
2
7
B
H
A
ALA
55
A
ALA
70
HELX_P
A
CYS
58
A
CYS
73
5
3
4
A
PRO
60
A
PRO
77
HELX_P
A
ASP
60
A
ASP
80
5
4
4
B
E
A
THR
60
A
THR
84
HELX_P
A
ASN
62
A
ASN
86
5
5
3
I
A
ASP
125
A
ASP
151
HELX_P
A
LEU
130
A
LEU
159
1
6
9
A
GLU
164
A
GLU
198
HELX_P
A
SER
171
A
SER
205
1
7
8
A
LYS
185
A
LYS
220
HELX_P
A
GLY
186
A
GLY
224
5
8
5
C
A
VAL
231
A
VAL
272
HELX_P
A
PHE
245
A
PHE
286
1
9
15
H
PRO
360
B
PRO
6
HELX_P
H
ALA
365
B
ALA
11
1
10
6
disulf
2.018
A
A
CYS
1
A
SG
CYS
2
1_555
A
CYS
122
A
SG
CYS
148
1_555
disulf
2.028
A
CYS
42
A
SG
CYS
57
1_555
A
CYS
58
A
SG
CYS
73
1_555
disulf
2.021
A
CYS
168
A
SG
CYS
202
1_555
A
CYS
182
A
SG
CYS
216
1_555
disulf
2.035
A
CYS
191
A
SG
CYS
230
1_555
A
CYS
220
A
SG
CYS
260
1_555
covale
1.333
H
ALA
362
B
C
ALA
8
1_555
H
TYS
363
B
N
TYS
9
1_555
covale
1.329
H
TYS
363
B
C
TYS
9
1_555
H
LEU
364
B
N
LEU
10
1_555
BLOOD CLOTTING/HYDROLASE INHIBITOR
thrombin inhibitor complex, BLOOD CLOTTING-HYDROLASE INHIBITOR COMPLEX
A
SER
36
A
SER
51
A
1
A
PRO
37
A
PRO
52
0.39
THRB_HUMAN
UNP
1
335
P00734
DCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWD
KNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQ
AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVM
KSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFG
HIR2_HIRME
UNP
2
55
P28504
DFEEIPEEYLQ
335
621
1NT1
1
246
P00734
A
1
1
287
55
65
1NT1
355
365
P28504
H
2
1
11
2
GLU
CONFLICT
ALA
362
1NT1
H
P28504
UNP
62
8
2
GLN
CONFLICT
ALA
365
1NT1
H
P28504
UNP
65
11
7
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
20
A
SER
34
A
ASP
21
A
ASP
35
A
GLN
156
A
GLN
190
A
PRO
161
A
PRO
195
A
LYS
135
A
LYS
164
A
GLY
140
A
GLY
169
A
PRO
198
A
PRO
237
A
LYS
202
A
LYS
241
A
TRP
207
A
TRP
248
A
TRP
215
A
TRP
256
A
GLY
226
A
GLY
267
A
HIS
230
A
HIS
271
A
MET
180
A
MET
214
A
ALA
183
A
ALA
217
A
GLN
30
A
GLN
44
A
ARG
35
A
ARG
49
A
GLU
39
A
GLU
54
A
LEU
46
A
LEU
61
A
TRP
51
A
TRP
66
A
THR
54
A
THR
69
A
ALA
104
A
ALA
130
A
LEU
108
A
LEU
134
A
LYS
81
A
LYS
106
A
ILE
90
A
ILE
115
A
LEU
64
A
LEU
88
A
ILE
68
A
ILE
92
A
GLN
30
A
GLN
44
A
ARG
35
A
ARG
49
BINDING SITE FOR RESIDUE T76 A 247
Software
9
BINDING SITE FOR CHAIN H OF HIRUDIN
Software
15
A
HIS
57
A
HIS
72
9
1_555
A
TYR
60
A
TYR
76
A
9
1_555
A
SER
195
A
SER
234
9
1_555
A
VAL
213
A
VAL
254
9
1_555
A
SER
214
A
SER
255
9
1_555
A
TRP
215
A
TRP
256
9
1_555
A
GLY
216
A
GLY
257
9
1_555
A
GLY
219
A
GLY
259
9
1_555
A
PHE
227
A
PHE
268
9
1_555
A
PHE
34
A
PHE
48
15
1_555
A
GLN
38
A
GLN
53
15
1_555
A
LEU
40
A
LEU
55
15
1_555
A
LEU
65
A
LEU
89
15
1_555
A
ARG
67
A
ARG
91
15
1_555
A
ARG
73
A
ARG
97
15
1_555
A
THR
74
A
THR
98
15
1_555
A
ARG
75
A
ARG
99
15
2_555
A
ARG
75
A
ARG
99
15
1_555
A
TYR
76
A
TYR
100
15
1_555
A
LYS
81
A
LYS
106
15
1_555
A
ILE
82
A
ILE
107
15
1_555
A
MET
84
A
MET
109
15
1_555
A
SER
153
A
SER
187
15
2_555
A
HOH
639
D
HOH
15
1_555
5
monoclinic
C 1 2 1