13.09
15.934
-2.940
15.857
A
O5'
DC
1
ATOM
A
O5'
DC
1
1
1.00
1
O
13.97
15.021
-3.867
16.396
A
C5'
DC
1
ATOM
A
C5'
DC
1
1
1.00
1
C
13.89
14.659
-4.883
15.332
A
C4'
DC
1
ATOM
A
C4'
DC
1
1
1.00
1
C
13.99
13.931
-4.220
14.274
A
O4'
DC
1
ATOM
A
O4'
DC
1
1
1.00
1
O
14.77
15.855
-5.540
14.653
A
C3'
DC
1
ATOM
A
C3'
DC
1
1
1.00
1
C
15.70
15.588
-6.899
14.451
A
O3'
DC
1
ATOM
A
O3'
DC
1
1
1.00
1
O
14.06
15.978
-4.793
13.332
A
C2'
DC
1
ATOM
A
C2'
DC
1
1
1.00
1
C
13.37
14.523
-4.516
13.022
A
C1'
DC
1
ATOM
A
C1'
DC
1
1
1.00
1
C
13.41
14.311
-3.405
12.031
A
N1
DC
1
ATOM
A
N1
DC
1
1
1.00
1
N
12.85
14.487
-3.695
10.676
A
C2
DC
1
ATOM
A
C2
DC
1
1
1.00
1
C
13.09
14.831
-4.837
10.335
A
O2
DC
1
ATOM
A
O2
DC
1
1
1.00
1
O
13.08
14.278
-2.711
9.772
A
N3
DC
1
ATOM
A
N3
DC
1
1
1.00
1
N
13.80
13.922
-1.484
10.153
A
C4
DC
1
ATOM
A
C4
DC
1
1
1.00
1
C
13.49
13.744
-0.561
9.196
A
N4
DC
1
ATOM
A
N4
DC
1
1
1.00
1
N
13.39
13.740
-1.163
11.532
A
C5
DC
1
ATOM
A
C5
DC
1
1
1.00
1
C
13.07
13.941
-2.144
12.425
A
C6
DC
1
ATOM
A
C6
DC
1
1
1.00
1
C
15.42
16.300
-8.027
15.319
A
P
DC
2
ATOM
A
P
DC
1
2
1.00
1
P
16.18
15.612
-9.284
14.948
A
OP1
DC
2
ATOM
A
OP1
DC
1
2
1.00
1
O
17.05
16.374
-7.579
16.724
A
OP2
DC
2
ATOM
A
OP2
DC
1
2
1.00
1
O
16.46
17.774
-7.986
14.721
A
O5'
DC
2
ATOM
A
O5'
DC
1
2
1.00
1
O
16.01
18.035
-8.567
13.437
A
C5'
DC
2
ATOM
A
C5'
DC
1
2
1.00
1
C
15.45
19.310
-8.008
12.843
A
C4'
DC
2
ATOM
A
C4'
DC
1
2
1.00
1
C
14.07
19.021
-6.696
12.301
A
O4'
DC
2
ATOM
A
O4'
DC
1
2
1.00
1
O
15.55
20.465
-7.780
13.808
A
C3'
DC
2
ATOM
A
C3'
DC
1
2
1.00
1
C
18.14
21.680
-8.126
13.170
A
O3'
DC
2
ATOM
A
O3'
DC
1
2
1.00
1
O
13.43
20.387
-6.290
14.097
A
C2'
DC
2
ATOM
A
C2'
DC
1
2
1.00
1
C
12.54
20.025
-5.797
12.708
A
C1'
DC
2
ATOM
A
C1'
DC
1
2
1.00
1
C
10.13
19.411
-4.441
12.562
A
N1
DC
2
ATOM
A
N1
DC
1
2
1.00
1
N
9.24
19.037
-4.035
11.278
A
C2
DC
2
ATOM
A
C2
DC
1
2
1.00
1
C
8.94
19.247
-4.795
10.322
A
O2
DC
2
ATOM
A
O2
DC
1
2
1.00
1
O
8.30
18.464
-2.811
11.120
A
N3
DC
2
ATOM
A
N3
DC
1
2
1.00
1
N
8.36
18.262
-2.018
12.169
A
C4
DC
2
ATOM
A
C4
DC
1
2
1.00
1
C
6.99
17.688
-0.817
11.964
A
N4
DC
2
ATOM
A
N4
DC
1
2
1.00
1
N
7.87
18.640
-2.420
13.484
A
C5
DC
2
ATOM
A
C5
DC
1
2
1.00
1
C
9.55
19.202
-3.624
13.645
A
C6
DC
2
ATOM
A
C6
DC
1
2
1.00
1
C
21.71
22.276
-9.598
13.357
A
P
DG
3
ATOM
A
P
DG
1
3
1.00
1
P
22.75
21.157
-10.556
13.414
A
OP1
DG
3
ATOM
A
OP1
DG
1
3
1.00
1
O
20.74
23.232
-9.487
14.477
A
OP2
DG
3
ATOM
A
OP2
DG
1
3
1.00
1
O
22.00
23.088
-9.812
12.000
A
O5'
DG
3
ATOM
A
O5'
DG
1
3
1.00
1
O
22.41
22.427
-9.761
10.745
A
C5'
DG
3
ATOM
A
C5'
DG
1
3
1.00
1
C
22.19
23.235
-8.984
9.717
A
C4'
DG
3
ATOM
A
C4'
DG
1
3
1.00
1
C
20.42
22.949
-7.566
9.825
A
O4'
DG
3
ATOM
A
O4'
DG
1
3
1.00
1
O
22.70
24.752
-9.079
9.828
A
C3'
DG
3
ATOM
A
C3'
DG
1
3
1.00
1
C
25.10
25.323
-8.921
8.538
A
O3'
DG
3
ATOM
A
O3'
DG
1
3
1.00
1
O
21.16
25.098
-7.900
10.725
A
C2'
DG
3
ATOM
A
C2'
DG
1
3
1.00
1
C
19.01
24.141
-6.868
10.143
A
C1'
DG
3
ATOM
A
C1'
DG
1
3
1.00
1
C
16.15
23.719
-5.786
11.010
A
N9
DG
3
ATOM
A
N9
DG
1
3
1.00
1
N
14.76
23.791
-5.678
12.373
A
C8
DG
3
ATOM
A
C8
DG
1
3
1.00
1
C
14.48
23.273
-4.572
12.820
A
N7
DG
3
ATOM
A
N7
DG
1
3
1.00
1
N
13.30
22.836
-3.917
11.675
A
C5
DG
3
ATOM
A
C5
DG
1
3
1.00
1
C
12.06
22.192
-2.672
11.521
A
C6
DG
3
ATOM
A
C6
DG
1
3
1.00
1
C
12.24
21.881
-1.868
12.405
A
O6
DG
3
ATOM
A
O6
DG
1
3
1.00
1
O
10.73
21.930
-2.361
10.192
A
N1
DG
3
ATOM
A
N1
DG
1
3
1.00
1
N
10.26
22.223
-3.183
9.143
A
C2
DG
3
ATOM
A
C2
DG
1
3
1.00
1
C
9.21
21.873
-2.713
7.939
A
N2
DG
3
ATOM
A
N2
DG
1
3
1.00
1
N
11.39
22.824
-4.362
9.268
A
N3
DG
3
ATOM
A
N3
DG
1
3
1.00
1
N
13.48
23.099
-4.652
10.557
A
C4
DG
3
ATOM
A
C4
DG
1
3
1.00
1
C
27.11
26.095
-10.132
7.847
A
P
DG
4
ATOM
A
P
DG
1
4
1.00
1
P
27.34
25.190
-11.304
7.846
A
OP1
DG
4
ATOM
A
OP1
DG
1
4
1.00
1
O
26.49
27.437
-10.175
8.461
A
OP2
DG
4
ATOM
A
OP2
DG
1
4
1.00
1
O
25.55
26.226
-9.646
6.339
A
O5'
DG
4
ATOM
A
O5'
DG
1
4
1.00
1
O
25.04
25.067
-9.324
5.598
A
C5'
DG
4
ATOM
A
C5'
DG
1
4
1.00
1
C
24.66
25.313
-8.108
4.722
A
C4'
DG
4
ATOM
A
C4'
DG
1
4
1.00
1
C
23.18
25.196
-6.873
5.476
A
O4'
DG
4
ATOM
A
O4'
DG
1
4
1.00
1
O
24.45
26.684
-8.023
4.060
A
C3'
DG
4
ATOM
A
C3'
DG
1
4
1.00
1
C
24.80
26.426
-7.506
2.768
A
O3'
DG
4
ATOM
A
O3'
DG
1
4
1.00
1
O
23.32
27.474
-7.102
4.995
A
C2'
DG
4
ATOM
A
C2'
DG
1
4
1.00
1
C
21.72
26.402
-6.128
5.461
A
C1'
DG
4
ATOM
A
C1'
DG
1
4
1.00
1
C
18.96
26.505
-5.579
6.809
A
N9
DG
4
ATOM
A
N9
DG
1
4
1.00
1
N
17.53
26.964
-6.204
7.944
A
C8
DG
4
ATOM
A
C8
DG
1
4
1.00
1
C
17.18
26.897
-5.456
9.012
A
N7
DG
4
ATOM
A
N7
DG
1
4
1.00
1
N
15.23
26.357
-4.261
8.562
A
C5
DG
4
ATOM
A
C5
DG
1
4
1.00
1
C
14.53
26.045
-3.080
9.270
A
C6
DG
4
ATOM
A
C6
DG
1
4
1.00
1
C
15.66
26.199
-2.846
10.476
A
O6
DG
4
ATOM
A
O6
DG
1
4
1.00
1
O
12.53
25.514
-2.093
8.445
A
N1
DG
4
ATOM
A
N1
DG
1
4
1.00
1
N
13.10
25.290
-2.247
7.098
A
C2
DG
4
ATOM
A
C2
DG
1
4
1.00
1
C
11.41
24.771
-1.178
6.472
A
N2
DG
4
ATOM
A
N2
DG
1
4
1.00
1
N
14.95
25.576
-3.354
6.418
A
N3
DG
4
ATOM
A
N3
DG
1
4
1.00
1
N
16.16
26.105
-4.317
7.212
A
C4
DG
4
ATOM
A
C4
DG
1
4
1.00
1
C
25.28
27.520
-7.319
1.625
A
P
DT
5
ATOM
A
P
DT
1
5
1.00
1
P
24.35
26.787
-7.454
0.349
A
OP1
DT
5
ATOM
A
OP1
DT
1
5
1.00
1
O
23.53
28.741
-8.091
1.937
A
OP2
DT
5
ATOM
A
OP2
DT
1
5
1.00
1
O
21.55
27.862
-5.784
1.818
A
O5'
DT
5
ATOM
A
O5'
DT
1
5
1.00
1
O
20.05
26.990
-4.821
1.266
A
C5'
DT
5
ATOM
A
C5'
DT
1
5
1.00
1
C
17.62
27.462
-3.465
1.725
A
C4'
DT
5
ATOM
A
C4'
DT
1
5
1.00
1
C
17.41
27.566
-3.466
3.157
A
O4'
DT
5
ATOM
A
O4'
DT
1
5
1.00
1
O
16.92
28.857
-3.108
1.240
A
C3'
DT
5
ATOM
A
C3'
DT
1
5
1.00
1
C
15.97
28.659
-2.323
0.109
A
O3'
DT
5
ATOM
A
O3'
DT
1
5
1.00
1
O
16.32
29.506
-2.371
2.409
A
C2'
DT
5
ATOM
A
C2'
DT
1
5
1.00
1
C
16.16
28.445
-2.417
3.507
A
C1'
DT
5
ATOM
A
C1'
DT
1
5
1.00
1
C
15.09
28.907
-2.725
4.883
A
N1
DT
5
ATOM
A
N1
DT
1
5
1.00
1
N
14.45
28.697
-1.836
5.918
A
C2
DT
5
ATOM
A
C2
DT
1
5
1.00
1
C
13.81
28.158
-0.744
5.797
A
O2
DT
5
ATOM
A
O2
DT
1
5
1.00
1
O
15.02
29.164
-2.261
7.130
A
N3
DT
5
ATOM
A
N3
DT
1
5
1.00
1
N
16.15
29.780
-3.470
7.409
A
C4
DT
5
ATOM
A
C4
DT
1
5
1.00
1
C
16.03
30.147
-3.739
8.549
A
O4
DT
5
ATOM
A
O4
DT
1
5
1.00
1
O
16.39
29.963
-4.353
6.279
A
C5
DT
5
ATOM
A
C5
DT
1
5
1.00
1
C
17.44
30.623
-5.697
6.405
A
C7
DT
5
ATOM
A
C7
DT
1
5
1.00
1
C
15.66
29.520
-3.943
5.091
A
C6
DT
5
ATOM
A
C6
DT
1
5
1.00
1
C
13.56
29.819
-1.737
-0.791
A
P
DA
6
ATOM
A
P
DA
1
6
1.00
1
P
15.41
29.222
-1.538
-2.124
A
OP1
DA
6
ATOM
A
OP1
DA
1
6
1.00
1
O
12.31
31.055
-2.541
-0.642
A
OP2
DA
6
ATOM
A
OP2
DA
1
6
1.00
1
O
13.82
30.064
-0.333
-0.091
A
O5'
DA
6
ATOM
A
O5'
DA
1
6
1.00
1
O
13.20
29.001
0.550
0.162
A
C5'
DA
6
ATOM
A
C5'
DA
1
6
1.00
1
C
12.69
29.529
1.760
0.908
A
C4'
DA
6
ATOM
A
C4'
DA
1
6
1.00
1
C
11.71
29.833
1.358
2.261
A
O4'
DA
6
ATOM
A
O4'
DA
1
6
1.00
1
O
13.03
30.812
2.372
0.361
A
C3'
DA
6
ATOM
A
C3'
DA
1
6
1.00
1
C
15.06
30.777
3.789
0.465
A
O3'
DA
6
ATOM
A
O3'
DA
1
6
1.00
1
O
12.35
31.902
1.789
1.260
A
C2'
DA
6
ATOM
A
C2'
DA
1
6
1.00
1
C
12.26
31.186
1.633
2.593
A
C1'
DA
6
ATOM
A
C1'
DA
1
6
1.00
1
C
11.06
31.664
0.558
3.464
A
N9
DA
6
ATOM
A
N9
DA
1
6
1.00
1
N
10.29
32.214
-0.643
3.090
A
C8
DA
6
ATOM
A
C8
DA
1
6
1.00
1
C
9.20
32.541
-1.415
4.099
A
N7
DA
6
ATOM
A
N7
DA
1
6
1.00
1
N
10.49
32.167
-0.682
5.210
A
C5
DA
6
ATOM
A
C5
DA
1
6
1.00
1
C
10.59
32.241
-0.952
6.593
A
C6
DA
6
ATOM
A
C6
DA
1
6
1.00
1
C
11.48
32.736
-2.087
7.086
A
N6
DA
6
ATOM
A
N6
DA
1
6
1.00
1
N
10.53
31.775
-0.013
7.443
A
N1
DA
6
ATOM
A
N1
DA
1
6
1.00
1
N
9.98
31.273
1.126
6.952
A
C2
DA
6
ATOM
A
C2
DA
1
6
1.00
1
C
10.34
31.149
1.489
5.675
A
N3
DA
6
ATOM
A
N3
DA
1
6
1.00
1
N
10.71
31.620
0.534
4.846
A
C4
DA
6
ATOM
A
C4
DA
1
6
1.00
1
C
16.11
30.112
4.715
-0.656
A
P
DC
7
ATOM
A
P
DC
1
7
1.00
1
P
16.37
30.017
6.071
-0.074
A
OP1
DC
7
ATOM
A
OP1
DC
1
7
1.00
1
O
14.07
28.905
4.047
-1.189
A
OP2
DC
7
ATOM
A
OP2
DC
1
7
1.00
1
O
14.38
31.209
4.752
-1.825
A
O5'
DC
7
ATOM
A
O5'
DC
1
7
1.00
1
O
14.39
32.464
5.375
-1.633
A
C5'
DC
7
ATOM
A
C5'
DC
1
7
1.00
1
C
13.91
33.184
5.565
-2.947
A
C4'
DC
7
ATOM
A
C4'
DC
1
7
1.00
1
C
12.82
33.364
4.260
-3.538
A
O4'
DC
7
ATOM
A
O4'
DC
1
7
1.00
1
O
13.88
32.451
6.389
-3.997
A
C3'
DC
7
ATOM
A
C3'
DC
1
7
1.00
1
C
15.82
33.384
7.084
-4.776
A
O3'
DC
7
ATOM
A
O3'
DC
1
7
1.00
1
O
13.47
31.735
5.344
-4.837
A
C2'
DC
7
ATOM
A
C2'
DC
1
7
1.00
1
C
12.06
32.714
4.192
-4.791
A
C1'
DC
7
ATOM
A
C1'
DC
1
7
1.00
1
C
10.81
32.083
2.863
-4.945
A
N1
DC
7
ATOM
A
N1
DC
1
7
1.00
1
N
11.26
31.952
2.347
-6.236
A
C2
DC
7
ATOM
A
C2
DC
1
7
1.00
1
C
12.20
32.355
3.006
-7.205
A
O2
DC
7
ATOM
A
O2
DC
1
7
1.00
1
O
11.63
31.387
1.125
-6.389
A
N3
DC
7
ATOM
A
N3
DC
1
7
1.00
1
N
11.28
30.962
0.432
-5.337
A
C4
DC
7
ATOM
A
C4
DC
1
7
1.00
1
C
12.86
30.414
-0.760
-5.580
A
N4
DC
7
ATOM
A
N4
DC
1
7
1.00
1
N
9.97
31.069
0.947
-4.012
A
C5
DC
7
ATOM
A
C5
DC
1
7
1.00
1
C
10.04
31.632
2.152
-3.865
A
C6
DC
7
ATOM
A
C6
DC
1
7
1.00
1
C
18.38
33.428
8.676
-4.779
A
P
DC
8
ATOM
A
P
DC
1
8
1.00
1
P
17.38
34.745
9.027
-5.365
A
OP1
DC
8
ATOM
A
OP1
DC
1
8
1.00
1
O
17.92
33.009
9.197
-3.465
A
OP2
DC
8
ATOM
A
OP2
DC
1
8
1.00
1
O
17.01
32.252
9.079
-5.789
A
O5'
DC
8
ATOM
A
O5'
DC
1
8
1.00
1
O
15.34
32.435
8.891
-7.171
A
C5'
DC
8
ATOM
A
C5'
DC
1
8
1.00
1
C
14.30
31.105
8.884
-7.884
A
C4'
DC
8
ATOM
A
C4'
DC
1
8
1.00
1
C
12.77
30.371
7.688
-7.560
A
O4'
DC
8
ATOM
A
O4'
DC
1
8
1.00
1
O
14.32
30.170
10.021
-7.507
A
C3'
DC
8
ATOM
A
C3'
DC
1
8
1.00
1
C
17.80
29.502
10.434
-8.669
A
O3'
DC
8
ATOM
A
O3'
DC
1
8
1.00
1
O
13.00
29.240
9.391
-6.483
A
C2'
DC
8
ATOM
A
C2'
DC
1
8
1.00
1
C
11.28
29.082
7.990
-7.063
A
C1'
DC
8
ATOM
A
C1'
DC
1
8
1.00
1
C
9.56
28.786
6.845
-6.165
A
N1
DC
8
ATOM
A
N1
DC
1
8
1.00
1
N
9.46
28.562
5.599
-6.758
A
C2
DC
8
ATOM
A
C2
DC
1
8
1.00
1
C
9.22
28.588
5.513
-7.988
A
O2
DC
8
ATOM
A
O2
DC
1
8
1.00
1
O
9.98
28.318
4.527
-5.963
A
N3
DC
8
ATOM
A
N3
DC
1
8
1.00
1
N
10.58
28.300
4.660
-4.635
A
C4
DC
8
ATOM
A
C4
DC
1
8
1.00
1
C
10.40
28.073
3.584
-3.871
A
N4
DC
8
ATOM
A
N4
DC
1
8
1.00
1
N
9.03
28.524
5.924
-4.020
A
C5
DC
8
ATOM
A
C5
DC
1
8
1.00
1
C
9.00
28.764
6.972
-4.805
A
C6
DC
8
ATOM
A
C6
DC
1
8
1.00
1
C
21.69
29.901
11.789
-9.409
A
P
DG
9
ATOM
A
P
DG
1
9
1.00
1
P
23.07
31.330
11.743
-9.802
A
OP1
DG
9
ATOM
A
OP1
DG
1
9
1.00
1
O
21.61
29.384
12.886
-8.574
A
OP2
DG
9
ATOM
A
OP2
DG
1
9
1.00
1
O
21.07
29.023
11.650
-10.725
A
O5'
DG
9
ATOM
A
O5'
DG
1
9
1.00
1
O
20.85
29.334
10.632
-11.659
A
C5'
DG
9
ATOM
A
C5'
DG
1
9
1.00
1
C
21.12
28.085
10.111
-12.342
A
C4'
DG
9
ATOM
A
C4'
DG
1
9
1.00
1
C
20.00
27.347
9.240
-11.448
A
O4'
DG
9
ATOM
A
O4'
DG
1
9
1.00
1
O
21.58
27.063
11.161
-12.750
A
C3'
DG
9
ATOM
A
C3'
DG
1
9
1.00
1
C
24.44
26.291
10.627
-13.796
A
O3'
DG
9
ATOM
A
O3'
DG
1
9
1.00
1
O
19.82
26.238
11.311
-11.484
A
C2'
DG
9
ATOM
A
C2'
DG
1
9
1.00
1
C
17.95
26.127
9.851
-11.067
A
C1'
DG
9
ATOM
A
C1'
DG
1
9
1.00
1
C
14.43
25.983
9.544
-9.659
A
N9
DG
9
ATOM
A
N9
DG
1
9
1.00
1
N
13.36
26.111
10.362
-8.566
A
C8
DG
9
ATOM
A
C8
DG
1
9
1.00
1
C
12.80
25.929
9.733
-7.434
A
N7
DG
9
ATOM
A
N7
DG
1
9
1.00
1
N
11.95
25.667
8.417
-7.810
A
C5
DG
9
ATOM
A
C5
DG
1
9
1.00
1
C
10.69
25.406
7.262
-7.030
A
C6
DG
9
ATOM
A
C6
DG
1
9
1.00
1
C
12.24
25.336
7.162
-5.797
A
O6
DG
9
ATOM
A
O6
DG
1
9
1.00
1
O
9.39
25.189
6.124
-7.804
A
N1
DG
9
ATOM
A
N1
DG
1
9
1.00
1
N
9.64
25.252
6.116
-9.178
A
C2
DG
9
ATOM
A
C2
DG
1
9
1.00
1
C
9.93
25.023
4.935
-9.768
A
N2
DG
9
ATOM
A
N2
DG
1
9
1.00
1
N
9.97
25.500
7.187
-9.925
A
N3
DG
9
ATOM
A
N3
DG
1
9
1.00
1
N
11.64
25.695
8.294
-9.176
A
C4
DG
9
ATOM
A
C4
DG
1
9
1.00
1
C
26.30
26.131
11.336
-15.208
A
P
DG
10
ATOM
A
P
DG
1
10
1.00
1
P
26.32
27.353
11.084
-16.001
A
OP1
DG
10
ATOM
A
OP1
DG
1
10
1.00
1
O
24.80
25.636
12.705
-14.945
A
OP2
DG
10
ATOM
A
OP2
DG
1
10
1.00
1
O
23.96
24.942
10.454
-15.796
A
O5'
DG
10
ATOM
A
O5'
DG
1
10
1.00
1
O
23.06
25.185
9.113
-16.211
A
C5'
DG
10
ATOM
A
C5'
DG
1
10
1.00
1
C
21.57
23.941
8.269
-16.038
A
C4'
DG
10
ATOM
A
C4'
DG
1
10
1.00
1
C
19.94
23.686
8.162
-14.621
A
O4'
DG
10
ATOM
A
O4'
DG
1
10
1.00
1
O
21.07
22.671
8.850
-16.662
A
C3'
DG
10
ATOM
A
C3'
DG
1
10
1.00
1
C
22.26
21.839
7.829
-17.210
A
O3'
DG
10
ATOM
A
O3'
DG
1
10
1.00
1
O
20.23
21.988
9.548
-15.504
A
C2'
DG
10
ATOM
A
C2'
DG
1
10
1.00
1
C
18.74
22.398
8.660
-14.332
A
C1'
DG
10
ATOM
A
C1'
DG
1
10
1.00
1
C
17.10
22.503
9.306
-13.037
A
N9
DG
10
ATOM
A
N9
DG
1
10
1.00
1
N
16.03
22.808
10.619
-12.770
A
C8
DG
10
ATOM
A
C8
DG
1
10
1.00
1
C
16.54
22.828
10.886
-11.499
A
N7
DG
10
ATOM
A
N7
DG
1
10
1.00
1
N
15.37
22.533
9.672
-10.892
A
C5
DG
10
ATOM
A
C5
DG
1
10
1.00
1
C
14.46
22.420
9.342
-9.525
A
C6
DG
10
ATOM
A
C6
DG
1
10
1.00
1
C
15.63
22.563
10.088
-8.546
A
O6
DG
10
ATOM
A
O6
DG
1
10
1.00
1
O
13.13
22.084
8.002
-9.329
A
N1
DG
10
ATOM
A
N1
DG
1
10
1.00
1
N
12.25
21.912
7.085
-10.336
A
C2
DG
10
ATOM
A
C2
DG
1
10
1.00
1
C
10.73
21.601
5.846
-9.940
A
N2
DG
10
ATOM
A
N2
DG
1
10
1.00
1
N
13.12
22.010
7.376
-11.627
A
N3
DG
10
ATOM
A
N3
DG
1
10
1.00
1
N
15.37
22.325
8.686
-11.826
A
C4
DG
10
ATOM
A
C4
DG
1
10
1.00
1
C
22.65
44.622
2.864
1.722
B
O5'
DC
1
ATOM
B
O5'
DC
1
1
1.00
1
O
20.71
45.916
2.331
1.957
B
C5'
DC
1
ATOM
B
C5'
DC
1
1
1.00
1
C
19.80
46.399
2.693
3.351
B
C4'
DC
1
ATOM
B
C4'
DC
1
1
1.00
1
C
17.39
46.120
4.088
3.614
B
O4'
DC
1
ATOM
B
O4'
DC
1
1
1.00
1
O
19.48
45.732
1.922
4.485
B
C3'
DC
1
ATOM
B
C3'
DC
1
1
1.00
1
C
21.77
46.743
1.329
5.281
B
O3'
DC
1
ATOM
B
O3'
DC
1
1
1.00
1
O
18.50
44.925
2.977
5.244
B
C2'
DC
1
ATOM
B
C2'
DC
1
1
1.00
1
C
16.02
45.754
4.214
4.964
B
C1'
DC
1
ATOM
B
C1'
DC
1
1
1.00
1
C
14.92
45.099
5.528
5.152
B
N1
DC
1
ATOM
B
N1
DC
1
1
1.00
1
N
13.11
44.929
6.007
6.448
B
C2
DC
1
ATOM
B
C2
DC
1
1
1.00
1
C
13.97
45.298
5.306
7.398
B
O2
DC
1
ATOM
B
O2
DC
1
1
1.00
1
O
12.48
44.351
7.221
6.622
B
N3
DC
1
ATOM
B
N3
DC
1
1
1.00
1
N
13.31
43.963
7.947
5.576
B
C4
DC
1
ATOM
B
C4
DC
1
1
1.00
1
C
15.65
43.402
9.139
5.821
B
N4
DC
1
ATOM
B
N4
DC
1
1
1.00
1
N
13.72
44.129
7.479
4.240
B
C5
DC
1
ATOM
B
C5
DC
1
1
1.00
1
C
14.25
44.696
6.274
4.075
B
C6
DC
1
ATOM
B
C6
DC
1
1
1.00
1
C
24.20
46.998
-0.238
5.187
B
P
DC
2
ATOM
B
P
DC
1
2
1.00
1
P
24.51
48.221
-0.585
5.945
B
OP1
DC
2
ATOM
B
OP1
DC
1
2
1.00
1
O
26.35
46.869
-0.610
3.767
B
OP2
DC
2
ATOM
B
OP2
DC
1
2
1.00
1
O
21.94
45.744
-0.829
5.976
B
O5'
DC
2
ATOM
B
O5'
DC
1
2
1.00
1
O
19.92
45.713
-0.727
7.389
B
C5'
DC
2
ATOM
B
C5'
DC
1
2
1.00
1
C
18.52
44.288
-0.827
7.898
B
C4'
DC
2
ATOM
B
C4'
DC
1
2
1.00
1
C
16.06
43.596
0.418
7.633
B
O4'
DC
2
ATOM
B
O4'
DC
1
2
1.00
1
O
18.56
43.459
-1.911
7.217
B
C3'
DC
2
ATOM
B
C3'
DC
1
2
1.00
1
C
22.16
42.657
-2.570
8.150
B
O3'
DC
2
ATOM
B
O3'
DC
1
2
1.00
1
O
17.85
42.611
-1.150
6.219
B
C2'
DC
2
ATOM
B
C2'
DC
1
2
1.00
1
C
14.94
42.366
0.136
6.992
B
C1'
DC
2
ATOM
B
C1'
DC
1
2
1.00
1
C
13.17
42.026
1.348
6.214
B
N1
DC
2
ATOM
B
N1
DC
1
2
1.00
1
N
10.19
41.748
2.492
6.949
B
C2
DC
2
ATOM
B
C2
DC
1
2
1.00
1
C
11.08
41.793
2.434
8.184
B
O2
DC
2
ATOM
B
O2
DC
1
2
1.00
1
O
10.25
41.442
3.633
6.291
B
N3
DC
2
ATOM
B
N3
DC
1
2
1.00
1
N
10.80
41.399
3.653
4.961
B
C4
DC
2
ATOM
B
C4
DC
1
2
1.00
1
C
13.17
41.099
4.800
4.353
B
N4
DC
2
ATOM
B
N4
DC
1
2
1.00
1
N
13.20
41.671
2.488
4.196
B
C5
DC
2
ATOM
B
C5
DC
1
2
1.00
1
C
12.77
41.976
1.365
4.849
B
C6
DC
2
ATOM
B
C6
DC
1
2
1.00
1
C
24.82
43.276
-3.774
8.987
B
P
DG
3
ATOM
B
P
DG
1
3
1.00
1
P
25.95
44.750
-3.760
8.915
B
OP1
DG
3
ATOM
B
OP1
DG
1
3
1.00
1
O
25.37
42.493
-4.971
8.634
B
OP2
DG
3
ATOM
B
OP2
DG
1
3
1.00
1
O
24.66
42.983
-3.136
10.416
B
O5'
DG
3
ATOM
B
O5'
DG
1
3
1.00
1
O
22.20
42.205
-3.745
11.427
B
C5'
DG
3
ATOM
B
C5'
DG
1
3
1.00
1
C
20.27
41.150
-2.750
11.869
B
C4'
DG
3
ATOM
B
C4'
DG
1
3
1.00
1
C
18.82
40.734
-1.710
10.918
B
O4'
DG
3
ATOM
B
O4'
DG
1
3
1.00
1
O
19.51
39.886
-3.530
12.140
B
C3'
DG
3
ATOM
B
C3'
DG
1
3
1.00
1
C
21.20
39.220
-2.927
13.203
B
O3'
DG
3
ATOM
B
O3'
DG
1
3
1.00
1
O
17.92
39.189
-3.427
10.798
B
C2'
DG
3
ATOM
B
C2'
DG
1
3
1.00
1
C
16.98
39.378
-1.940
10.531
B
C1'
DG
3
ATOM
B
C1'
DG
1
3
1.00
1
C
13.46
39.168
-1.506
9.147
B
N9
DG
3
ATOM
B
N9
DG
1
3
1.00
1
N
13.46
39.206
-2.255
7.997
B
C8
DG
3
ATOM
B
C8
DG
1
3
1.00
1
C
12.18
39.002
-1.563
6.912
B
N7
DG
3
ATOM
B
N7
DG
1
3
1.00
1
N
13.10
38.814
-0.274
7.372
B
C5
DG
3
ATOM
B
C5
DG
1
3
1.00
1
C
13.36
38.554
0.913
6.647
B
C6
DG
3
ATOM
B
C6
DG
1
3
1.00
1
C
14.57
38.435
1.039
5.420
B
O6
DG
3
ATOM
B
O6
DG
1
3
1.00
1
O
12.52
38.414
2.020
7.484
B
N1
DG
3
ATOM
B
N1
DG
1
3
1.00
1
N
12.02
38.546
1.968
8.853
B
C2
DG
3
ATOM
B
C2
DG
1
3
1.00
1
C
10.86
38.389
3.133
9.493
B
N2
DG
3
ATOM
B
N2
DG
1
3
1.00
1
N
12.12
38.791
0.861
9.549
B
N3
DG
3
ATOM
B
N3
DG
1
3
1.00
1
N
12.81
38.912
-0.219
8.740
B
C4
DG
3
ATOM
B
C4
DG
1
3
1.00
1
C
22.85
39.347
-3.586
14.649
B
P
DG
4
ATOM
B
P
DG
1
4
1.00
1
P
24.03
40.712
-3.356
15.194
B
OP1
DG
4
ATOM
B
OP1
DG
1
4
1.00
1
O
22.56
38.776
-4.940
14.544
B
OP2
DG
4
ATOM
B
OP2
DG
1
4
1.00
1
O
18.86
38.373
-2.622
15.433
B
O5'
DG
4
ATOM
B
O5'
DG
1
4
1.00
1
O
16.75
38.846
-1.324
15.739
B
C5'
DG
4
ATOM
B
C5'
DG
1
4
1.00
1
C
16.36
37.716
-0.336
15.625
B
C4'
DG
4
ATOM
B
C4'
DG
1
4
1.00
1
C
15.93
37.369
-0.140
14.225
B
O4'
DG
4
ATOM
B
O4'
DG
1
4
1.00
1
O
15.36
36.436
-0.770
16.325
B
C3'
DG
4
ATOM
B
C3'
DG
1
4
1.00
1
C
16.32
35.899
0.364
16.941
B
O3'
DG
4
ATOM
B
O3'
DG
1
4
1.00
1
O
15.43
35.582
-1.337
15.197
B
C2'
DG
4
ATOM
B
C2'
DG
1
4
1.00
1
C
14.25
36.016
-0.490
14.007
B
C1'
DG
4
ATOM
B
C1'
DG
1
4
1.00
1
C
11.89
35.968
-1.119
12.700
B
N9
DG
4
ATOM
B
N9
DG
1
4
1.00
1
N
12.88
36.193
-2.438
12.378
B
C8
DG
4
ATOM
B
C8
DG
1
4
1.00
1
C
11.96
36.086
-2.680
11.105
B
N7
DG
4
ATOM
B
N7
DG
1
4
1.00
1
N
11.78
35.787
-1.440
10.557
B
C5
DG
4
ATOM
B
C5
DG
1
4
1.00
1
C
10.92
35.563
-1.085
9.216
B
C6
DG
4
ATOM
B
C6
DG
1
4
1.00
1
C
12.60
35.588
-1.838
8.236
B
O6
DG
4
ATOM
B
O6
DG
1
4
1.00
1
O
9.99
35.269
0.268
9.062
B
N1
DG
4
ATOM
B
N1
DG
1
4
1.00
1
N
8.37
35.222
1.180
10.085
B
C2
DG
4
ATOM
B
C2
DG
1
4
1.00
1
C
7.98
34.910
2.437
9.730
B
N2
DG
4
ATOM
B
N2
DG
1
4
1.00
1
N
9.68
35.425
0.852
11.364
B
N3
DG
4
ATOM
B
N3
DG
1
4
1.00
1
N
10.02
35.700
-0.471
11.518
B
C4
DG
4
ATOM
B
C4
DG
1
4
1.00
1
C
17.38
34.533
0.363
17.773
B
P
DT
5
ATOM
B
P
DT
1
5
1.00
1
P
16.63
34.753
1.328
18.872
B
OP1
DT
5
ATOM
B
OP1
DT
1
5
1.00
1
O
13.63
34.054
-1.011
18.036
B
OP2
DT
5
ATOM
B
OP2
DT
1
5
1.00
1
O
16.24
33.592
1.027
16.661
B
O5'
DT
5
ATOM
B
O5'
DT
1
5
1.00
1
O
15.89
33.801
2.379
16.305
B
C5'
DT
5
ATOM
B
C5'
DT
1
5
1.00
1
C
16.24
32.842
2.820
15.229
B
C4'
DT
5
ATOM
B
C4'
DT
1
5
1.00
1
C
14.96
33.049
2.010
14.053
B
O4'
DT
5
ATOM
B
O4'
DT
1
5
1.00
1
O
17.60
31.371
2.679
15.606
B
C3'
DT
5
ATOM
B
C3'
DT
1
5
1.00
1
C
19.02
30.827
3.992
15.794
B
O3'
DT
5
ATOM
B
O3'
DT
1
5
1.00
1
O
17.34
30.762
1.882
14.450
B
C2'
DT
5
ATOM
B
C2'
DT
1
5
1.00
1
C
16.57
31.828
1.917
13.356
B
C1'
DT
5
ATOM
B
C1'
DT
1
5
1.00
1
C
14.89
31.984
0.739
12.443
B
N1
DT
5
ATOM
B
N1
DT
1
5
1.00
1
N
14.10
31.823
0.881
11.069
B
C2
DT
5
ATOM
B
C2
DT
1
5
1.00
1
C
11.60
31.516
1.926
10.521
B
O2
DT
5
ATOM
B
O2
DT
1
5
1.00
1
O
13.76
32.009
-0.268
10.338
B
N3
DT
5
ATOM
B
N3
DT
1
5
1.00
1
N
15.39
32.380
-1.512
10.829
B
C4
DT
5
ATOM
B
C4
DT
1
5
1.00
1
C
15.04
32.536
-2.491
10.091
B
O4
DT
5
ATOM
B
O4
DT
1
5
1.00
1
O
15.89
32.531
-1.588
12.262
B
C5
DT
5
ATOM
B
C5
DT
1
5
1.00
1
C
17.21
32.913
-2.879
12.923
B
C7
DT
5
ATOM
B
C7
DT
1
5
1.00
1
C
14.96
32.342
-0.481
12.984
B
C6
DT
5
ATOM
B
C6
DT
1
5
1.00
1
C
21.50
29.456
4.247
16.582
B
P
DA
6
ATOM
B
P
DA
1
6
1.00
1
P
22.62
29.505
5.627
17.111
B
OP1
DA
6
ATOM
B
OP1
DA
1
6
1.00
1
O
20.73
29.142
3.106
17.468
B
OP2
DA
6
ATOM
B
OP2
DA
1
6
1.00
1
O
19.84
28.404
4.256
15.405
B
O5'
DA
6
ATOM
B
O5'
DA
1
6
1.00
1
O
19.64
28.416
5.342
14.488
B
C5'
DA
6
ATOM
B
C5'
DA
1
6
1.00
1
C
19.01
27.447
5.072
13.361
B
C4'
DA
6
ATOM
B
C4'
DA
1
6
1.00
1
C
17.97
27.895
3.915
12.615
B
O4'
DA
6
ATOM
B
O4'
DA
1
6
1.00
1
O
18.78
26.036
4.727
13.807
B
C3'
DA
6
ATOM
B
C3'
DA
1
6
1.00
1
C
19.59
25.140
5.081
12.793
B
O3'
DA
6
ATOM
B
O3'
DA
1
6
1.00
1
O
18.12
26.090
3.218
13.925
B
C2'
DA
6
ATOM
B
C2'
DA
1
6
1.00
1
C
17.05
26.893
2.923
12.668
B
C1'
DA
6
ATOM
B
C1'
DA
1
6
1.00
1
C
14.93
27.484
1.602
12.614
B
N9
DA
6
ATOM
B
N9
DA
1
6
1.00
1
N
15.76
27.777
0.738
13.635
B
C8
DA
6
ATOM
B
C8
DA
1
6
1.00
1
C
15.75
28.309
-0.389
13.224
B
N7
DA
6
ATOM
B
N7
DA
1
6
1.00
1
N
15.48
28.351
-0.247
11.844
B
C5
DA
6
ATOM
B
C5
DA
1
6
1.00
1
C
15.33
28.800
-1.078
10.803
B
C6
DA
6
ATOM
B
C6
DA
1
6
1.00
1
C
16.04
29.317
-2.295
11.001
B
N6
DA
6
ATOM
B
N6
DA
1
6
1.00
1
N
14.64
28.686
-0.615
9.541
B
N1
DA
6
ATOM
B
N1
DA
1
6
1.00
1
N
13.44
28.173
0.595
9.315
B
C2
DA
6
ATOM
B
C2
DA
1
6
1.00
1
C
13.78
27.729
1.464
10.213
B
N3
DA
6
ATOM
B
N3
DA
1
6
1.00
1
N
14.54
27.845
0.975
11.457
B
C4
DA
6
ATOM
B
C4
DA
1
6
1.00
1
C
20.58
24.258
6.398
12.874
B
P
DC
7
ATOM
B
P
DC
1
7
1.00
1
P
21.25
25.137
7.538
13.224
B
OP1
DC
7
ATOM
B
OP1
DC
1
7
1.00
1
O
19.67
23.050
6.056
13.660
B
OP2
DC
7
ATOM
B
OP2
DC
1
7
1.00
1
O
19.71
23.829
6.529
11.350
B
O5'
DC
7
ATOM
B
O5'
DC
1
7
1.00
1
O
18.49
24.779
6.788
10.336
B
C5'
DC
7
ATOM
B
C5'
DC
1
7
1.00
1
C
17.60
24.454
5.967
9.101
B
C4'
DC
7
ATOM
B
C4'
DC
1
7
1.00
1
C
15.60
24.779
4.574
9.340
B
O4'
DC
7
ATOM
B
O4'
DC
1
7
1.00
1
O
16.66
22.985
5.991
8.681
B
C3'
DC
7
ATOM
B
C3'
DC
1
7
1.00
1
C
17.92
22.928
6.276
7.296
B
O3'
DC
7
ATOM
B
O3'
DC
1
7
1.00
1
O
15.38
22.479
4.593
9.045
B
C2'
DC
7
ATOM
B
C2'
DC
1
7
1.00
1
C
14.66
23.731
3.747
8.875
B
C1'
DC
7
ATOM
B
C1'
DC
1
7
1.00
1
C
13.10
23.918
2.510
9.680
B
N1
DC
7
ATOM
B
N1
DC
1
7
1.00
1
N
11.50
24.343
1.313
9.077
B
C2
DC
7
ATOM
B
C2
DC
1
7
1.00
1
C
10.63
24.510
1.233
7.857
B
O2
DC
7
ATOM
B
O2
DC
1
7
1.00
1
O
11.38
24.547
0.238
9.862
B
N3
DC
7
ATOM
B
N3
DC
1
7
1.00
1
N
11.15
24.361
0.307
11.177
B
C4
DC
7
ATOM
B
C4
DC
1
7
1.00
1
C
10.92
24.585
-0.796
11.889
B
N4
DC
7
ATOM
B
N4
DC
1
7
1.00
1
N
10.91
23.947
1.509
11.814
B
C5
DC
7
ATOM
B
C5
DC
1
7
1.00
1
C
12.42
23.745
2.571
11.034
B
C6
DC
7
ATOM
B
C6
DC
1
7
1.00
1
C
21.54
21.591
6.809
6.608
B
P
DC
8
ATOM
B
P
DC
1
8
1.00
1
P
21.88
21.970
7.505
5.353
B
OP1
DC
8
ATOM
B
OP1
DC
1
8
1.00
1
O
20.99
20.741
7.474
7.623
B
OP2
DC
8
ATOM
B
OP2
DC
1
8
1.00
1
O
18.49
20.897
5.445
6.211
B
O5'
DC
8
ATOM
B
O5'
DC
1
8
1.00
1
O
18.56
21.535
4.530
5.341
B
C5'
DC
8
ATOM
B
C5'
DC
1
8
1.00
1
C
18.61
20.605
3.349
5.149
B
C4'
DC
8
ATOM
B
C4'
DC
1
8
1.00
1
C
17.31
20.772
2.417
6.246
B
O4'
DC
8
ATOM
B
O4'
DC
1
8
1.00
1
O
19.41
19.120
3.715
5.164
B
C3'
DC
8
ATOM
B
C3'
DC
1
8
1.00
1
C
23.53
18.442
2.945
4.207
B
O3'
DC
8
ATOM
B
O3'
DC
1
8
1.00
1
O
17.47
18.672
3.387
6.584
B
C2'
DC
8
ATOM
B
C2'
DC
1
8
1.00
1
C
16.17
19.505
2.139
6.837
B
C1'
DC
8
ATOM
B
C1'
DC
1
8
1.00
1
C
13.26
19.774
1.732
8.262
B
N1
DC
8
ATOM
B
N1
DC
1
8
1.00
1
N
11.36
20.276
0.450
8.476
B
C2
DC
8
ATOM
B
C2
DC
1
8
1.00
1
C
10.73
20.459
-0.290
7.506
B
O2
DC
8
ATOM
B
O2
DC
1
8
1.00
1
O
10.83
20.548
0.052
9.739
B
N3
DC
8
ATOM
B
N3
DC
1
8
1.00
1
N
11.05
20.359
0.878
10.770
B
C4
DC
8
ATOM
B
C4
DC
1
8
1.00
1
C
10.74
20.648
0.434
11.997
B
N4
DC
8
ATOM
B
N4
DC
1
8
1.00
1
N
10.85
19.849
2.192
10.580
B
C5
DC
8
ATOM
B
C5
DC
1
8
1.00
1
C
11.62
19.579
2.572
9.322
B
C6
DC
8
ATOM
B
C6
DC
1
8
1.00
1
C
28.04
18.047
3.606
2.806
B
P
DG
9
ATOM
B
P
DG
1
9
1.00
1
P
29.01
19.274
4.164
2.191
B
OP1
DG
9
ATOM
B
OP1
DG
1
9
1.00
1
O
27.31
16.836
4.431
3.063
B
OP2
DG
9
ATOM
B
OP2
DG
1
9
1.00
1
O
27.09
17.690
2.315
1.955
B
O5'
DG
9
ATOM
B
O5'
DG
1
9
1.00
1
O
26.43
18.712
1.351
1.743
B
C5'
DG
9
ATOM
B
C5'
DG
1
9
1.00
1
C
25.77
18.176
-0.064
1.829
B
C4'
DG
9
ATOM
B
C4'
DG
1
9
1.00
1
C
24.23
18.066
-0.513
3.211
B
O4'
DG
9
ATOM
B
O4'
DG
1
9
1.00
1
O
25.50
16.784
-0.282
1.264
B
C3'
DG
9
ATOM
B
C3'
DG
1
9
1.00
1
C
29.02
16.752
-1.593
0.791
B
O3'
DG
9
ATOM
B
O3'
DG
1
9
1.00
1
O
23.60
15.880
-0.116
2.473
B
C2'
DG
9
ATOM
B
C2'
DG
1
9
1.00
1
C
21.88
16.721
-0.824
3.537
B
C1'
DG
9
ATOM
B
C1'
DG
1
9
1.00
1
C
17.48
16.585
-0.392
4.920
B
N9
DG
9
ATOM
B
N9
DG
1
9
1.00
1
N
15.97
16.044
0.786
5.366
B
C8
DG
9
ATOM
B
C8
DG
1
9
1.00
1
C
15.05
16.086
0.917
6.658
B
N7
DG
9
ATOM
B
N7
DG
1
9
1.00
1
N
13.68
16.691
-0.244
7.093
B
C5
DG
9
ATOM
B
C5
DG
1
9
1.00
1
C
12.65
16.993
-0.626
8.410
B
C6
DG
9
ATOM
B
C6
DG
1
9
1.00
1
C
12.96
16.751
0.039
9.421
B
O6
DG
9
ATOM
B
O6
DG
1
9
1.00
1
O
10.96
17.603
-1.876
8.488
B
N1
DG
9
ATOM
B
N1
DG
1
9
1.00
1
N
11.11
17.904
-2.635
7.377
B
C2
DG
9
ATOM
B
C2
DG
1
9
1.00
1
C
10.77
18.500
-3.808
7.625
B
N2
DG
9
ATOM
B
N2
DG
1
9
1.00
1
N
12.10
17.629
-2.282
6.123
B
N3
DG
9
ATOM
B
N3
DG
1
9
1.00
1
N
14.25
17.020
-1.068
6.052
B
C4
DG
9
ATOM
B
C4
DG
1
9
1.00
1
C
30.50
16.036
-1.968
-0.582
B
P
DG
10
ATOM
B
P
DG
1
10
1.00
1
P
32.07
17.008
-1.703
-1.660
B
OP1
DG
10
ATOM
B
OP1
DG
1
10
1.00
1
O
31.27
14.703
-1.318
-0.566
B
OP2
DG
10
ATOM
B
OP2
DG
1
10
1.00
1
O
28.39
15.888
-3.548
-0.414
B
O5'
DG
10
ATOM
B
O5'
DG
1
10
1.00
1
O
25.73
16.991
-4.375
-0.071
B
C5'
DG
10
ATOM
B
C5'
DG
1
10
1.00
1
C
24.57
16.520
-5.497
0.836
B
C4'
DG
10
ATOM
B
C4'
DG
1
10
1.00
1
C
22.48
16.163
-4.989
2.153
B
O4'
DG
10
ATOM
B
O4'
DG
1
10
1.00
1
O
23.34
15.268
-6.217
0.361
B
C3'
DG
10
ATOM
B
C3'
DG
1
10
1.00
1
C
24.87
15.360
-7.577
0.737
B
O3'
DG
10
ATOM
B
O3'
DG
1
10
1.00
1
O
22.38
14.143
-5.488
1.087
B
C2'
DG
10
ATOM
B
C2'
DG
1
10
1.00
1
C
20.57
14.797
-5.244
2.441
B
C1'
DG
10
ATOM
B
C1'
DG
1
10
1.00
1
C
17.46
14.312
-4.105
3.212
B
N9
DG
10
ATOM
B
N9
DG
1
10
1.00
1
N
16.57
13.722
-2.953
2.765
B
C8
DG
10
ATOM
B
C8
DG
1
10
1.00
1
C
17.20
13.421
-2.120
3.720
B
N7
DG
10
ATOM
B
N7
DG
1
10
1.00
1
N
16.26
13.856
-2.758
4.870
B
C5
DG
10
ATOM
B
C5
DG
1
10
1.00
1
C
14.81
13.800
-2.346
6.218
B
C6
DG
10
ATOM
B
C6
DG
1
10
1.00
1
C
13.73
13.346
-1.288
6.663
B
O6
DG
10
ATOM
B
O6
DG
1
10
1.00
1
O
14.98
14.352
-3.290
7.087
B
N1
DG
10
ATOM
B
N1
DG
1
10
1.00
1
N
14.18
14.868
-4.496
6.676
B
C2
DG
10
ATOM
B
C2
DG
1
10
1.00
1
C
16.14
15.355
-5.286
7.634
B
N2
DG
10
ATOM
B
N2
DG
1
10
1.00
1
N
15.83
14.927
-4.895
5.417
B
N3
DG
10
ATOM
B
N3
DG
1
10
1.00
1
N
16.02
14.404
-3.979
4.572
B
C4
DG
10
ATOM
B
C4
DG
1
10
1.00
1
C
29.19
20.850
-7.533
6.716
A
CA
CA
101
HETATM
C
CA
CA
2
1.00
1
CA
25.27
43.584
1.888
12.120
B
CA
CA
102
HETATM
D
CA
CA
2
1.00
1
CA
22.44
29.761
3.641
5.164
A
O
HOH
111
HETATM
E
O
HOH
3
1.00
1
O
21.49
24.283
-3.528
4.028
A
O
HOH
112
HETATM
E
O
HOH
3
1.00
1
O
19.13
21.679
-3.098
4.934
A
O
HOH
114
HETATM
E
O
HOH
3
1.00
1
O
19.71
22.617
-6.252
6.678
A
O
HOH
115
HETATM
E
O
HOH
3
1.00
1
O
20.55
20.331
-6.908
9.201
A
O
HOH
116
HETATM
E
O
HOH
3
1.00
1
O
15.71
15.018
-7.467
10.505
A
O
HOH
119
HETATM
E
O
HOH
3
1.00
1
O
19.71
14.641
-0.436
15.414
A
O
HOH
120
HETATM
E
O
HOH
3
1.00
1
O
22.10
16.993
0.886
14.109
A
O
HOH
121
HETATM
E
O
HOH
3
1.00
1
O
20.23
21.883
-1.810
15.093
A
O
HOH
124
HETATM
E
O
HOH
3
1.00
1
O
26.63
26.869
-4.266
12.574
A
O
HOH
125
HETATM
E
O
HOH
3
1.00
1
O
20.59
33.186
-1.237
-0.001
A
O
HOH
126
HETATM
E
O
HOH
3
0.50
1
O
18.20
27.151
-0.298
-3.079
A
O
HOH
127
HETATM
E
O
HOH
3
1.00
1
O
20.92
33.654
4.957
-8.412
A
O
HOH
128
HETATM
E
O
HOH
3
1.00
1
O
12.96
28.904
7.022
-10.563
A
O
HOH
129
HETATM
E
O
HOH
3
1.00
1
O
18.45
25.386
6.886
-12.816
A
O
HOH
130
HETATM
E
O
HOH
3
1.00
1
O
24.84
27.244
1.248
3.968
A
O
HOH
136
HETATM
E
O
HOH
3
1.00
1
O
24.21
29.522
6.030
2.977
A
O
HOH
139
HETATM
E
O
HOH
3
1.00
1
O
29.40
20.949
-9.512
7.429
A
O
HOH
143
HETATM
E
O
HOH
3
1.00
1
O
31.56
21.783
5.565
-16.192
A
O
HOH
144
HETATM
E
O
HOH
3
1.00
1
O
27.19
25.815
9.452
-3.974
A
O
HOH
145
HETATM
E
O
HOH
3
1.00
1
O
34.12
26.178
11.605
-5.642
A
O
HOH
146
HETATM
E
O
HOH
3
1.00
1
O
33.25
22.655
-11.536
7.160
A
O
HOH
147
HETATM
E
O
HOH
3
1.00
1
O
37.39
35.619
6.521
-6.301
A
O
HOH
148
HETATM
E
O
HOH
3
1.00
1
O
29.74
30.540
9.624
-2.846
A
O
HOH
149
HETATM
E
O
HOH
3
1.00
1
O
37.08
33.510
12.725
-8.478
A
O
HOH
150
HETATM
E
O
HOH
3
1.00
1
O
33.03
17.490
-11.527
15.448
A
O
HOH
154
HETATM
E
O
HOH
3
1.00
1
O
23.40
13.280
-10.085
15.940
A
O
HOH
155
HETATM
E
O
HOH
3
1.00
1
O
29.09
28.474
-2.986
-4.399
A
O
HOH
156
HETATM
E
O
HOH
3
1.00
1
O
18.62
18.907
-7.916
7.691
A
O
HOH
159
HETATM
E
O
HOH
3
1.00
1
O
22.29
23.378
-6.216
3.124
A
O
HOH
160
HETATM
E
O
HOH
3
1.00
1
O
31.32
27.729
6.715
-14.136
A
O
HOH
161
HETATM
E
O
HOH
3
1.00
1
O
18.90
17.659
-7.579
9.953
A
O
HOH
162
HETATM
E
O
HOH
3
1.00
1
O
34.80
24.633
-1.515
2.686
A
O
HOH
163
HETATM
E
O
HOH
3
1.00
1
O
37.45
33.723
-3.801
3.563
A
O
HOH
164
HETATM
E
O
HOH
3
1.00
1
O
29.10
20.687
-4.063
2.112
A
O
HOH
174
HETATM
E
O
HOH
3
1.00
1
O
32.88
23.198
-3.848
15.877
A
O
HOH
176
HETATM
E
O
HOH
3
1.00
1
O
22.28
25.883
1.025
-0.788
A
O
HOH
177
HETATM
E
O
HOH
3
1.00
1
O
25.25
30.168
-4.967
-4.791
A
O
HOH
180
HETATM
E
O
HOH
3
1.00
1
O
29.57
31.643
-5.357
2.676
A
O
HOH
181
HETATM
E
O
HOH
3
1.00
1
O
35.55
32.899
9.348
-10.918
A
O
HOH
188
HETATM
E
O
HOH
3
1.00
1
O
28.80
29.832
-6.062
-2.477
A
O
HOH
192
HETATM
E
O
HOH
3
1.00
1
O
30.69
31.852
-4.971
0.210
A
O
HOH
193
HETATM
E
O
HOH
3
1.00
1
O
17.94
44.608
2.017
9.755
B
O
HOH
103
HETATM
F
O
HOH
3
1.00
1
O
28.07
47.574
2.602
12.526
B
O
HOH
104
HETATM
F
O
HOH
3
1.00
1
O
20.10
44.418
5.439
13.494
B
O
HOH
105
HETATM
F
O
HOH
3
1.00
1
O
12.04
41.846
1.033
10.511
B
O
HOH
106
HETATM
F
O
HOH
3
1.00
1
O
20.66
41.627
1.332
13.019
B
O
HOH
107
HETATM
F
O
HOH
3
1.00
1
O
15.77
39.309
1.022
12.344
B
O
HOH
108
HETATM
F
O
HOH
3
1.00
1
O
16.92
46.833
3.331
8.690
B
O
HOH
109
HETATM
F
O
HOH
3
1.00
1
O
23.36
35.935
3.154
13.032
B
O
HOH
110
HETATM
F
O
HOH
3
1.00
1
O
15.59
20.567
-0.718
4.849
B
O
HOH
113
HETATM
F
O
HOH
3
1.00
1
O
24.74
18.195
-4.082
4.029
B
O
HOH
117
HETATM
F
O
HOH
3
1.00
1
O
22.04
16.319
-7.078
5.297
B
O
HOH
118
HETATM
F
O
HOH
3
1.00
1
O
14.46
16.063
2.480
9.974
B
O
HOH
122
HETATM
F
O
HOH
3
1.00
1
O
27.33
12.348
-2.390
-0.862
B
O
HOH
123
HETATM
F
O
HOH
3
1.00
1
O
21.71
42.404
3.575
12.398
B
O
HOH
131
HETATM
F
O
HOH
3
1.00
1
O
26.39
44.944
-0.112
12.272
B
O
HOH
132
HETATM
F
O
HOH
3
1.00
1
O
29.54
42.921
10.615
3.375
B
O
HOH
133
HETATM
F
O
HOH
3
1.00
1
O
21.03
37.778
4.600
11.885
B
O
HOH
134
HETATM
F
O
HOH
3
1.00
1
O
26.74
27.459
3.743
8.941
B
O
HOH
135
HETATM
F
O
HOH
3
1.00
1
O
23.30
23.883
-0.159
14.820
B
O
HOH
137
HETATM
F
O
HOH
3
1.00
1
O
31.23
22.840
2.876
15.095
B
O
HOH
138
HETATM
F
O
HOH
3
1.00
1
O
23.13
34.924
-3.471
18.043
B
O
HOH
140
HETATM
F
O
HOH
3
1.00
1
O
23.15
44.208
1.942
14.445
B
O
HOH
141
HETATM
F
O
HOH
3
1.00
1
O
21.87
20.319
-5.384
4.945
B
O
HOH
142
HETATM
F
O
HOH
3
1.00
1
O
32.88
26.698
1.324
17.379
B
O
HOH
151
HETATM
F
O
HOH
3
0.50
1
O
31.16
28.021
7.411
18.157
B
O
HOH
152
HETATM
F
O
HOH
3
1.00
1
O
30.23
20.202
7.529
2.841
B
O
HOH
153
HETATM
F
O
HOH
3
1.00
1
O
22.10
41.180
5.319
1.340
B
O
HOH
157
HETATM
F
O
HOH
3
1.00
1
O
22.76
21.652
5.207
1.364
B
O
HOH
158
HETATM
F
O
HOH
3
1.00
1
O
25.75
43.747
5.685
0.945
B
O
HOH
165
HETATM
F
O
HOH
3
1.00
1
O
27.89
43.100
0.907
1.212
B
O
HOH
166
HETATM
F
O
HOH
3
1.00
1
O
33.84
49.129
-3.071
8.025
B
O
HOH
167
HETATM
F
O
HOH
3
1.00
1
O
27.85
42.356
-0.836
15.551
B
O
HOH
168
HETATM
F
O
HOH
3
1.00
1
O
44.59
35.873
-5.340
11.203
B
O
HOH
169
HETATM
F
O
HOH
3
1.00
1
O
22.73
33.077
2.513
20.620
B
O
HOH
170
HETATM
F
O
HOH
3
1.00
1
O
29.37
36.535
2.959
17.614
B
O
HOH
171
HETATM
F
O
HOH
3
1.00
1
O
27.83
14.195
3.126
7.556
B
O
HOH
172
HETATM
F
O
HOH
3
1.00
1
O
26.72
40.022
3.698
13.043
B
O
HOH
173
HETATM
F
O
HOH
3
1.00
1
O
31.52
10.520
-3.014
0.915
B
O
HOH
175
HETATM
F
O
HOH
3
1.00
1
O
28.20
45.409
-1.549
14.973
B
O
HOH
178
HETATM
F
O
HOH
3
1.00
1
O
27.03
17.720
7.642
3.728
B
O
HOH
179
HETATM
F
O
HOH
3
1.00
1
O
24.69
35.026
4.707
21.178
B
O
HOH
182
HETATM
F
O
HOH
3
1.00
1
O
33.36
35.948
5.261
17.206
B
O
HOH
183
HETATM
F
O
HOH
3
1.00
1
O
31.90
15.324
4.862
5.876
B
O
HOH
184
HETATM
F
O
HOH
3
1.00
1
O
32.38
45.472
3.496
12.618
B
O
HOH
185
HETATM
F
O
HOH
3
1.00
1
O
29.37
33.831
4.631
11.794
B
O
HOH
186
HETATM
F
O
HOH
3
1.00
1
O
30.60
45.115
11.928
3.042
B
O
HOH
187
HETATM
F
O
HOH
3
1.00
1
O
31.24
51.198
-3.429
6.063
B
O
HOH
189
HETATM
F
O
HOH
3
1.00
1
O
31.55
41.565
0.689
17.311
B
O
HOH
190
HETATM
F
O
HOH
3
1.00
1
O
28.85
45.044
-4.028
14.452
B
O
HOH
191
HETATM
F
O
HOH
3
1.00
1
O
0.015065
0.000000
0.005522
0.000000
0.042034
0.000000
0.000000
0.000000
0.028692
0.00000
0.00000
0.00000
Cardin, C.J.
Gale, B.C.
Thorpe, J.H.
Teixeira, S.C.M.
Gan, Y.
Moraes, M.I.A.A.
Brogden, A.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
110.13
90.00
66.380
23.790
37.120
Ca 2
40.078
CALCIUM ION
non-polymer
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
N
1
N
CA
N
2
N
O
N
3
N
P
N
4
N
O
N
5
N
O
N
6
N
O
N
7
N
C
N
8
R
C
N
9
N
O
N
10
S
C
N
11
N
O
N
12
N
C
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
N
C
N
49
R
C
N
50
N
N
N
51
N
C
N
52
N
O
N
53
N
N
N
54
N
C
N
55
N
N
N
56
N
C
N
57
N
C
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
O
N
73
N
P
N
74
N
O
N
75
N
O
N
76
N
O
N
77
N
C
N
78
R
C
N
79
N
O
N
80
S
C
N
81
N
O
N
82
N
C
N
83
R
C
Y
84
N
N
Y
85
N
C
Y
86
N
N
Y
87
N
C
N
88
N
C
N
89
N
O
N
90
N
N
N
91
N
C
N
92
N
N
N
93
N
N
Y
94
N
C
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
O
N
110
N
P
N
111
N
O
N
112
N
O
N
113
N
O
N
114
N
C
N
115
R
C
N
116
N
O
N
117
S
C
N
118
N
O
N
119
N
C
N
120
R
C
N
121
N
N
N
122
N
C
N
123
N
O
N
124
N
N
N
125
N
C
N
126
N
O
N
127
N
C
N
128
N
C
N
129
N
C
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
O
N
146
N
H
N
147
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
To be Published
0353
Structural analysis of two Holliday junctions formed by the sequences TCGGTACCGA and CCGGTACCGG
10.2210/pdb1nvn/pdb
pdb_00001nvn
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
SINGLE WAVELENGTH
M
x-ray
1
0.811
1.0
X11
EMBL/DESY, HAMBURG
0.811
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE X11
3045.992
5'-D(CpCpGpGpTpApCpCpGpG)-3'
2
syn
polymer
40.078
CALCIUM ION
2
syn
non-polymer
18.015
water
91
nat
water
no
no
(DC)(DC)(DG)(DG)(DT)(DA)(DC)(DC)(DG)(DG)
CCGGTACCGG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
1
2.16
42.97
VAPOR DIFFUSION, SITTING DROP
6.5
MPD, CaCl2, cacodylate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 290K
290
-8.683
1
19
A
1
B
10
-3.670
A_DC1:DG10_B
1
-10.858
0.004
0.322
-0.295
1.879
1
19
A
2
B
9
-4.887
A_DC2:DG9_B
2
-3.743
0.033
0.099
-0.121
5.787
1
19
A
3
B
8
-4.533
A_DG3:DC8_B
3
2.706
-0.039
0.310
-0.253
-0.327
1
19
A
4
B
7
-1.789
A_DG4:DC7_B
4
-18.122
-0.293
0.389
-0.187
-11.785
1
20
A
5
B
6
-2.395
A_DT5:DA6_B
5
-9.012
-0.252
0.149
-0.009
7.506
1
20
A
6
B
5
-1.327
A_DA6:DT5_B
6
-10.953
0.076
0.161
-0.042
3.508
36.871
A
A
1
2
5.736
B
B
10
9
3.359
3.607
0.093
2.039
AA_DC1DC2:DG9DG10_BB
1
6.105
-9.709
36.206
2.706
0.729
3.269
39.342
A
A
2
3
-0.933
B
B
9
8
3.321
-0.628
0.258
2.417
AA_DC2DG3:DC8DG9_BB
2
-1.818
2.702
39.297
3.666
-0.601
3.907
36.050
A
A
3
4
5.267
B
B
8
7
3.679
3.245
-1.096
1.439
AA_DG3DG4:DC7DC8_BB
3
-5.205
8.449
35.542
1.788
0.908
3.597
41.734
A
A
4
5
-6.830
B
B
7
6
3.645
-4.849
0.595
0.576
AA_DG4DT5:DA6DC7_BB
4
4.004
-5.640
41.278
1.376
-0.366
3.162
32.216
A
A
5
6
9.886
B
B
6
5
2.984
5.461
0.099
1.321
AA_DT5DA6:DT5DA6_BB
5
-0.022
0.041
31.762
1.460
-0.183
chem_comp_atom
chem_comp_bond
database_2
diffrn_source
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-02-25
1
1
2008-04-29
1
2
2011-07-13
1
3
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_diffrn_source.pdbx_synchrotron_site
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Holliday junction formed by the sequence TCGGTACCGA in the presence of one calcium ion
Holliday junction formed by TCGGTACCGA in the presence of Na and Ca ions
Holliday junction formed by TCGGTACCGA with a spine of Sr ions
Holliday junction formed by CCGGTACCGG in the more symmetrical form
Holliday junction formed by CCGGTACmCGG with a methylated base
Holliday junction formed by CCGGTACCGG in the presence of a Na ion
RCSB
Y
RCSB
2003-02-04
REL
REL
CA
CALCIUM ION
HOH
water
Chemically synthesized
sample
CA
101
2
CA
CA
101
A
CA
102
2
CA
CA
102
B
HOH
111
3
HOH
HOH
111
A
HOH
112
3
HOH
HOH
112
A
HOH
114
3
HOH
HOH
114
A
HOH
115
3
HOH
HOH
115
A
HOH
116
3
HOH
HOH
116
A
HOH
119
3
HOH
HOH
119
A
HOH
120
3
HOH
HOH
120
A
HOH
121
3
HOH
HOH
121
A
HOH
124
3
HOH
HOH
124
A
HOH
125
3
HOH
HOH
125
A
HOH
126
3
HOH
HOH
126
A
HOH
127
3
HOH
HOH
127
A
HOH
128
3
HOH
HOH
128
A
HOH
129
3
HOH
HOH
129
A
HOH
130
3
HOH
HOH
130
A
HOH
136
3
HOH
HOH
136
A
HOH
139
3
HOH
HOH
139
A
HOH
143
3
HOH
HOH
143
A
HOH
144
3
HOH
HOH
144
A
HOH
145
3
HOH
HOH
145
A
HOH
146
3
HOH
HOH
146
A
HOH
147
3
HOH
HOH
147
A
HOH
148
3
HOH
HOH
148
A
HOH
149
3
HOH
HOH
149
A
HOH
150
3
HOH
HOH
150
A
HOH
154
3
HOH
HOH
154
A
HOH
155
3
HOH
HOH
155
A
HOH
156
3
HOH
HOH
156
A
HOH
159
3
HOH
HOH
159
A
HOH
160
3
HOH
HOH
160
A
HOH
161
3
HOH
HOH
161
A
HOH
162
3
HOH
HOH
162
A
HOH
163
3
HOH
HOH
163
A
HOH
164
3
HOH
HOH
164
A
HOH
174
3
HOH
HOH
174
A
HOH
176
3
HOH
HOH
176
A
HOH
177
3
HOH
HOH
177
A
HOH
180
3
HOH
HOH
180
A
HOH
181
3
HOH
HOH
181
A
HOH
188
3
HOH
HOH
188
A
HOH
192
3
HOH
HOH
192
A
HOH
193
3
HOH
HOH
193
A
HOH
103
3
HOH
HOH
103
B
HOH
104
3
HOH
HOH
104
B
HOH
105
3
HOH
HOH
105
B
HOH
106
3
HOH
HOH
106
B
HOH
107
3
HOH
HOH
107
B
HOH
108
3
HOH
HOH
108
B
HOH
109
3
HOH
HOH
109
B
HOH
110
3
HOH
HOH
110
B
HOH
113
3
HOH
HOH
113
B
HOH
117
3
HOH
HOH
117
B
HOH
118
3
HOH
HOH
118
B
HOH
122
3
HOH
HOH
122
B
HOH
123
3
HOH
HOH
123
B
HOH
131
3
HOH
HOH
131
B
HOH
132
3
HOH
HOH
132
B
HOH
133
3
HOH
HOH
133
B
HOH
134
3
HOH
HOH
134
B
HOH
135
3
HOH
HOH
135
B
HOH
137
3
HOH
HOH
137
B
HOH
138
3
HOH
HOH
138
B
HOH
140
3
HOH
HOH
140
B
HOH
141
3
HOH
HOH
141
B
HOH
142
3
HOH
HOH
142
B
HOH
151
3
HOH
HOH
151
B
HOH
152
3
HOH
HOH
152
B
HOH
153
3
HOH
HOH
153
B
HOH
157
3
HOH
HOH
157
B
HOH
158
3
HOH
HOH
158
B
HOH
165
3
HOH
HOH
165
B
HOH
166
3
HOH
HOH
166
B
HOH
167
3
HOH
HOH
167
B
HOH
168
3
HOH
HOH
168
B
HOH
169
3
HOH
HOH
169
B
HOH
170
3
HOH
HOH
170
B
HOH
171
3
HOH
HOH
171
B
HOH
172
3
HOH
HOH
172
B
HOH
173
3
HOH
HOH
173
B
HOH
175
3
HOH
HOH
175
B
HOH
178
3
HOH
HOH
178
B
HOH
179
3
HOH
HOH
179
B
HOH
182
3
HOH
HOH
182
B
HOH
183
3
HOH
HOH
183
B
HOH
184
3
HOH
HOH
184
B
HOH
185
3
HOH
HOH
185
B
HOH
186
3
HOH
HOH
186
B
HOH
187
3
HOH
HOH
187
B
HOH
189
3
HOH
HOH
189
B
HOH
190
3
HOH
HOH
190
B
HOH
191
3
HOH
HOH
191
B
C
1
n
1
DC
1
A
C
2
n
2
DC
2
A
G
3
n
3
DG
3
A
G
4
n
4
DG
4
A
T
5
n
5
DT
5
A
A
6
n
6
DA
6
A
C
7
n
7
DC
7
A
C
8
n
8
DC
8
A
G
9
n
9
DG
9
A
G
10
n
10
DG
10
A
C
1
n
1
DC
1
B
C
2
n
2
DC
2
B
G
3
n
3
DG
3
B
G
4
n
4
DG
4
B
T
5
n
5
DT
5
B
A
6
n
6
DA
6
B
C
7
n
7
DC
7
B
C
8
n
8
DC
8
B
G
9
n
9
DG
9
B
G
10
n
10
DG
10
B
author_defined_assembly
4
tetrameric
A
HOH
115
E
O
HOH
1_555
A
CA
101
C
CA
CA
1_555
A
HOH
116
E
O
HOH
1_555
92.1
A
HOH
115
E
O
HOH
1_555
A
CA
101
C
CA
CA
1_555
A
HOH
143
E
O
HOH
1_555
121.3
A
HOH
116
E
O
HOH
1_555
A
CA
101
C
CA
CA
1_555
A
HOH
143
E
O
HOH
1_555
85.0
A
HOH
115
E
O
HOH
1_555
A
CA
101
C
CA
CA
1_555
A
HOH
159
E
O
HOH
1_555
145.3
A
HOH
116
E
O
HOH
1_555
A
CA
101
C
CA
CA
1_555
A
HOH
159
E
O
HOH
1_555
56.4
A
HOH
143
E
O
HOH
1_555
A
CA
101
C
CA
CA
1_555
A
HOH
159
E
O
HOH
1_555
74.3
A
HOH
115
E
O
HOH
1_555
A
CA
101
C
CA
CA
1_555
B
HOH
142
F
O
HOH
1_555
72.3
A
HOH
116
E
O
HOH
1_555
A
CA
101
C
CA
CA
1_555
B
HOH
142
F
O
HOH
1_555
112.0
A
HOH
143
E
O
HOH
1_555
A
CA
101
C
CA
CA
1_555
B
HOH
142
F
O
HOH
1_555
158.9
A
HOH
159
E
O
HOH
1_555
A
CA
101
C
CA
CA
1_555
B
HOH
142
F
O
HOH
1_555
104.0
B
HOH
103
F
O
HOH
1_555
B
CA
102
D
CA
CA
1_555
B
HOH
106
F
O
HOH
1_555
72.9
B
HOH
103
F
O
HOH
1_555
B
CA
102
D
CA
CA
1_555
B
HOH
107
F
O
HOH
1_555
137.1
B
HOH
106
F
O
HOH
1_555
B
CA
102
D
CA
CA
1_555
B
HOH
107
F
O
HOH
1_555
64.3
B
HOH
103
F
O
HOH
1_555
B
CA
102
D
CA
CA
1_555
B
HOH
131
F
O
HOH
1_555
107.9
B
HOH
106
F
O
HOH
1_555
B
CA
102
D
CA
CA
1_555
B
HOH
131
F
O
HOH
1_555
88.2
B
HOH
107
F
O
HOH
1_555
B
CA
102
D
CA
CA
1_555
B
HOH
131
F
O
HOH
1_555
69.5
B
HOH
103
F
O
HOH
1_555
B
CA
102
D
CA
CA
1_555
B
HOH
132
F
O
HOH
1_555
82.9
B
HOH
106
F
O
HOH
1_555
B
CA
102
D
CA
CA
1_555
B
HOH
132
F
O
HOH
1_555
98.5
B
HOH
107
F
O
HOH
1_555
B
CA
102
D
CA
CA
1_555
B
HOH
132
F
O
HOH
1_555
105.2
B
HOH
131
F
O
HOH
1_555
B
CA
102
D
CA
CA
1_555
B
HOH
132
F
O
HOH
1_555
168.7
B
HOH
103
F
O
HOH
1_555
B
CA
102
D
CA
CA
1_555
B
HOH
141
F
O
HOH
1_555
141.4
B
HOH
106
F
O
HOH
1_555
B
CA
102
D
CA
CA
1_555
B
HOH
141
F
O
HOH
1_555
143.5
B
HOH
107
F
O
HOH
1_555
B
CA
102
D
CA
CA
1_555
B
HOH
141
F
O
HOH
1_555
81.0
B
HOH
131
F
O
HOH
1_555
B
CA
102
D
CA
CA
1_555
B
HOH
141
F
O
HOH
1_555
90.0
B
HOH
132
F
O
HOH
1_555
B
CA
102
D
CA
CA
1_555
B
HOH
141
F
O
HOH
1_555
79.2
B
HOH
103
F
O
HOH
1_555
B
CA
102
D
CA
CA
1_555
B
HOH
185
F
O
HOH
1_555
81.5
B
HOH
106
F
O
HOH
1_555
B
CA
102
D
CA
CA
1_555
B
HOH
185
F
O
HOH
1_555
149.0
B
HOH
107
F
O
HOH
1_555
B
CA
102
D
CA
CA
1_555
B
HOH
185
F
O
HOH
1_555
137.4
B
HOH
131
F
O
HOH
1_555
B
CA
102
D
CA
CA
1_555
B
HOH
185
F
O
HOH
1_555
83.2
B
HOH
132
F
O
HOH
1_555
B
CA
102
D
CA
CA
1_555
B
HOH
185
F
O
HOH
1_555
95.4
B
HOH
141
F
O
HOH
1_555
B
CA
102
D
CA
CA
1_555
B
HOH
185
F
O
HOH
1_555
66.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_655
-x+1,y,-z
crystal symmetry operation
66.3800000000
0.0000000000
0.0000000000
1
A
HOH
126
E
HOH
1
B
HOH
151
F
HOH
1
3.37
0.30
108.30
111.67
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
1
-4.73
0.70
108.00
103.27
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
1
8.42
1.10
109.80
118.22
B
B
B
C5'
C4'
O4'
DG
DG
DG
3
3
3
N
1
1.83
0.30
108.30
110.13
B
B
B
O4'
C1'
N9
DG
DG
DG
3
3
3
N
1
2.19
0.30
108.30
110.49
B
B
B
O4'
C1'
N9
DA
DA
DA
6
6
6
N
1
-5.57
0.70
108.00
102.43
B
B
B
O4'
C1'
N1
DC
DC
DC
7
7
7
N
13.443
-0.44
0.00
-0.10
1.55
0.00
-1.18
0.953
0.899
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.26361
0.20629
0.20872
1.80
34.92
236
5229
4920
4.6
98.49
3.566
0.104
RANDOM
1
THROUGHOUT
1.0
1.0
MOLECULAR REPLACEMENT
0.331
0.154
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.80
34.92
91
497
2
404
0
0.008
0.021
452
0.001
0.020
186
1.731
3.000
694
1.501
3.000
472
0.053
0.200
60
0.007
0.020
210
0.000
0.020
2
0.125
0.200
49
0.193
0.200
202
0.094
0.200
102
0.175
0.200
67
0.244
0.200
6
0.107
0.200
20
0.314
0.200
19
0.124
0.200
19
2.111
3.000
452
3.269
4.500
694
0.331
0.253
1.847
28
369
20
20.904
1.8
34.92
1NVN
5158
5158
1.0
1.0
0.06
1
16.78
3.71
98.3
0.2
1.8
2.1
6.06
1885
3.73
98.4
refinement
REFMAC
5.1.24
Structural Characterisation of the Holliday junction formed by the sequence CCGGTACCGG at 1.8 A
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
metalc
2.183
A
CA
101
C
CA
CA
1_555
A
HOH
115
E
O
HOH
1_555
metalc
2.614
A
CA
101
C
CA
CA
1_555
A
HOH
116
E
O
HOH
1_555
metalc
2.106
A
CA
101
C
CA
CA
1_555
A
HOH
143
E
O
HOH
1_555
metalc
2.207
A
CA
101
C
CA
CA
1_555
A
HOH
159
E
O
HOH
1_555
metalc
2.835
A
CA
101
C
CA
CA
1_555
B
HOH
142
F
O
HOH
1_555
metalc
2.580
B
CA
102
D
CA
CA
1_555
B
HOH
103
F
O
HOH
1_555
metalc
2.518
B
CA
102
D
CA
CA
1_555
B
HOH
106
F
O
HOH
1_555
metalc
2.224
B
CA
102
D
CA
CA
1_555
B
HOH
107
F
O
HOH
1_555
metalc
2.077
B
CA
102
D
CA
CA
1_555
B
HOH
131
F
O
HOH
1_555
metalc
2.423
B
CA
102
D
CA
CA
1_555
B
HOH
132
F
O
HOH
1_555
metalc
2.408
B
CA
102
D
CA
CA
1_555
B
HOH
141
F
O
HOH
1_555
metalc
2.529
B
CA
102
D
CA
CA
1_555
B
HOH
185
F
O
HOH
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
10
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
10
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
10
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N3
DC
2
1_555
B
DG
9
B
N1
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N4
DC
2
1_555
B
DG
9
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
2
A
O2
DC
2
1_555
B
DG
9
B
N2
DG
9
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N1
DG
3
1_555
B
DC
8
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N2
DG
3
1_555
B
DC
8
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
3
A
O6
DG
3
1_555
B
DC
8
B
N4
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
DC
7
B
N3
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
DC
7
B
O2
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
DC
7
B
N4
DC
7
1_555
hydrog
WATSON-CRICK
A
DT
5
A
N3
DT
5
1_555
B
DA
6
B
N1
DA
6
1_555
hydrog
WATSON-CRICK
A
DT
5
A
O4
DT
5
1_555
B
DA
6
B
N6
DA
6
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N1
DA
6
1_555
B
DT
5
B
N3
DT
5
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N6
DA
6
1_555
B
DT
5
B
O4
DT
5
1_555
DNA
Holliday Junction, Calcium ion, DNA
1NVN
PDB
1
1NVN
1
10
1NVN
1
10
1NVN
A
1
1
10
1
10
1NVN
1
10
1NVN
B
1
1
10
BINDING SITE FOR RESIDUE CA A 101
A
CA
101
Software
5
BINDING SITE FOR RESIDUE CA B 102
B
CA
102
Software
7
A
HOH
115
E
HOH
5
1_555
A
HOH
116
E
HOH
5
1_555
A
HOH
143
E
HOH
5
1_555
A
HOH
159
E
HOH
5
1_555
B
HOH
142
F
HOH
5
1_555
B
HOH
103
F
HOH
7
1_555
B
HOH
106
F
HOH
7
1_555
B
HOH
107
F
HOH
7
1_555
B
HOH
131
F
HOH
7
1_555
B
HOH
132
F
HOH
7
1_555
B
HOH
141
F
HOH
7
1_555
B
HOH
185
F
HOH
7
1_555
5
C 1 2 1