0.007098 0.000000 0.000000 0.000000 0.018836 0.000000 0.000000 0.000000 0.014835 0.00000 0.00000 0.00000 Miller, M. Shuman, J.D. Sebastian, T. Dauter, Z. Johnson, P.F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 140.892 53.089 67.406 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N O N 75 N P N 76 N O N 77 N O N 78 N O N 79 N C N 80 R C N 81 N O N 82 S C N 83 N O N 84 N C N 85 R C Y 86 N N Y 87 N C Y 88 N N Y 89 N C Y 90 N C N 91 N N Y 92 N N Y 93 N C Y 94 N N Y 95 N C N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N O N 111 N P N 112 N O N 113 N O N 114 N O N 115 N C N 116 R C N 117 N O N 118 S C N 119 N O N 120 N C N 121 R C N 122 N N N 123 N C N 124 N O N 125 N N N 126 N C N 127 N N N 128 N C N 129 N C N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N P N 146 N O N 147 N O N 148 N O N 149 N C N 150 R C N 151 N O N 152 S C N 153 N O N 154 N C N 155 R C Y 156 N N Y 157 N C Y 158 N N Y 159 N C N 160 N C N 161 N O N 162 N N N 163 N C N 164 N N N 165 N N Y 166 N C N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N O N 182 N P N 183 N O N 184 N O N 185 N O N 186 N C N 187 R C N 188 N O N 189 S C N 190 N O N 191 N C N 192 R C N 193 N N N 194 N C N 195 N O N 196 N N N 197 N C N 198 N O N 199 N C N 200 N C N 201 N C N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N N N 218 S C N 219 N C N 220 N O N 221 N C N 222 N C N 223 N C N 224 N O N 225 N N N 226 N O N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N N N 238 S C N 239 N C N 240 N O N 241 N C N 242 N C N 243 N C N 244 N O N 245 N O N 246 N O N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N N N 257 N C N 258 N C N 259 N O N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N O N 267 N H N 268 N H N 269 N N N 270 S C N 271 N C N 272 N O N 273 S C N 274 N C N 275 N C N 276 N C N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C N 296 N C N 297 N C N 298 N C N 299 N O N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N N N 314 S C N 315 N C N 316 N O N 317 N C N 318 N C N 319 N C N 320 N C N 321 N N N 322 N O N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N N N 339 S C N 340 N C N 341 N O N 342 N C N 343 N O N 344 N O N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N N N 353 S C N 354 N C N 355 N O N 356 R C N 357 N O N 358 N C N 359 N O N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N N N 370 S C N 371 N C N 372 N O N 373 N C Y 374 N C Y 375 N C Y 376 N C Y 377 N C Y 378 N C Y 379 N C N 380 N O N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N N N 394 S C N 395 N C N 396 N O N 397 N C N 398 N C N 399 N C N 400 N O N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing Y 93 N sing Y 94 N sing Y 95 N doub N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N doub N 102 N sing N 103 N sing Y 104 N sing Y 105 N doub N 106 N sing Y 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing Y 166 N sing Y 167 N sing Y 168 N doub N 169 N sing Y 170 N sing N 171 N sing Y 172 N doub N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N doub N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N doub N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N doub N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N doub N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N doub N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N doub N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N doub N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N doub N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N doub N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N doub N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N doub N 369 N sing N 370 N sing N 371 N sing N 372 N sing Y 373 N doub Y 374 N sing Y 375 N sing N 376 N sing Y 377 N doub N 378 N sing Y 379 N doub N 380 N sing Y 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 278 15178 15184 10.1074/jbc.M300417200 12578822 Structural Basis for DNA Recognition by the Basic Region Leucine Zipper Transcription Factor CCAAT/enhancer Binding Protein Alpha 2003 10.2210/pdb1nwq/pdb pdb_00001nwq 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 1.07 1.0 X9B NSLS 1.07 SYNCHROTRON NSLS BEAMLINE X9B 6364.120 5'-D(*TP*TP*CP*CP*TP*AP*TP*TP*GP*CP*GP*CP*AP*AP*TP*CP*CP*AP*GP*TP*T)-3' 1 syn polymer 6520.249 5'-D(*AP*AP*AP*CP*TP*GP*GP*AP*TP*TP*GP*CP*GP*CP*AP*AP*TP*AP*GP*GP*A)-3' 1 syn polymer 7428.297 CCAAT/enhancer binding protein alpha BASIC REGION, LEUCINE ZIPPER DOMAIN 2 man polymer 18.015 water 34 nat water C/EBP alpha, Transcription Factor C/EBPalpha no no (DT)(DT)(DC)(DC)(DT)(DA)(DT)(DT)(DG)(DC)(DG)(DC)(DA)(DA)(DT)(DC)(DC)(DA)(DG)(DT) (DT) TTCCTATTGCGCAATCCAGTT B polydeoxyribonucleotide no no (DA)(DA)(DA)(DC)(DT)(DG)(DG)(DA)(DT)(DT)(DG)(DC)(DG)(DC)(DA)(DA)(DT)(DA)(DG)(DG) (DA) AAACTGGATTGCGCAATAGGA D polydeoxyribonucleotide no no GSNSNEYRVRRERNNIAVRKSRDKAKQRNVETQQKVLELTSDNDRLRKRVEQLSRELDTLRG GSNSNEYRVRRERNNIAVRKSRDKAKQRNVETQQKVLELTSDNDRLRKRVEQLSRELDTLRG A,C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Norway rat Rattus Escherichia sample CEBPA 10116 Rattus norvegicus 562 Escherichia coli Plasmid PT5 1 4.72 73.72 VAPOR DIFFUSION, HANGING DROP 5.7 NACL, MGCL2, PEG 400, MES, GLYCEROL, pH 5.7, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 1.162 B -9 D 9 9.020 B_DT-9:DA9_D 1 -17.569 -1.043 -0.427 0.272 13.804 1 19 B -8 D 8 5.202 B_DC-8:DG8_D 2 -27.933 0.109 -0.875 -0.021 10.886 1 19 B -7 D 7 5.484 B_DC-7:DG7_D 3 -20.414 0.302 -1.291 -0.528 9.056 1 20 B -6 D 6 -3.724 B_DT-6:DA6_D 4 -8.757 -0.672 -0.589 -0.041 -8.387 1 20 B -5 D 5 0.869 B_DA-5:DT5_D 5 -6.646 0.203 -0.380 -0.026 -4.479 1 20 B -4 D 4 -10.778 B_DT-4:DA4_D 6 -13.811 -0.647 -0.109 -0.079 -0.183 1 20 B -3 D 3 2.856 B_DT-3:DA3_D 7 -7.261 -0.261 0.210 0.106 7.918 1 19 B -2 D 2 -5.008 B_DG-2:DC2_D 8 -4.354 0.023 0.348 -0.131 -2.901 1 19 B -1 D 1 -4.266 B_DC-1:DG1_D 9 -1.495 0.035 0.009 -0.140 -10.050 1 19 B 1 D -1 -7.990 B_DG1:DC-1_D 10 0.042 0.210 -0.622 -0.227 -10.448 1 19 B 2 D -2 -4.354 B_DC2:DG-2_D 11 0.176 -0.469 0.278 0.032 -1.343 1 20 B 3 D -3 3.593 B_DA3:DT-3_D 12 -5.410 0.316 0.159 -0.174 0.634 1 20 B 4 D -4 3.018 B_DA4:DT-4_D 13 -8.547 0.101 0.211 -0.152 4.375 1 20 B 5 D -5 4.901 B_DT5:DA-5_D 14 -10.841 -0.103 -0.088 -0.375 -8.259 1 19 B 6 D -6 -3.710 B_DC6:DG-6_D 15 -8.233 -0.574 -0.095 -0.303 -15.527 1 19 B 7 D -7 -1.863 B_DC7:DG-7_D 16 -7.854 0.522 -0.360 -0.466 6.786 1 20 B 8 D -8 13.361 B_DA8:DT-8_D 17 -12.673 0.191 0.752 -0.384 -5.865 1 19 B 9 D -9 5.594 B_DG9:DC-9_D 18 -21.226 -0.180 -0.275 0.168 -11.556 1 20 B 10 D -10 -2.937 B_DT10:DA-10_D 19 -26.432 0.291 -0.247 -0.246 -19.728 B 11 D -11 -6.852 B_DT11:DA-11_D 20 -15.366 -1.166 -0.482 0.398 2.990 44.479 B B -9 -8 3.708 D D 9 8 2.935 2.799 0.174 1.025 BB_DT-9DC-8:DG8DA9_DD 1 5.593 -7.411 44.060 1.119 0.240 3.328 33.540 B B -8 -7 18.866 D D 8 7 3.239 10.700 -0.116 0.844 BB_DC-8DC-7:DG7DG8_DD 2 2.071 -3.652 31.768 -0.352 0.552 3.338 29.089 B B -7 -6 15.615 D D 7 6 3.575 7.644 -0.533 -0.451 BB_DC-7DT-6:DA6DG7_DD 3 -8.358 17.074 26.837 -2.744 -0.956 3.691 47.466 B B -6 -5 0.325 D D 6 5 3.694 0.262 0.399 -0.033 BB_DT-6DA-5:DT5DA6_DD 4 -0.268 0.333 47.465 -0.064 -0.521 3.014 23.559 B B -5 -4 7.123 D D 5 4 3.112 2.900 -0.838 -0.948 BB_DA-5DT-4:DA4DT5_DD 5 -1.269 3.117 23.348 -3.237 1.653 3.094 36.667 B B -4 -3 -0.106 D D 4 3 3.128 -0.066 0.758 -0.452 BB_DT-4DT-3:DA3DA4_DD 6 -1.575 2.505 36.634 -0.710 -1.411 3.196 33.687 B B -3 -2 1.762 D D 3 2 3.193 1.021 -0.292 0.023 BB_DT-3DG-2:DC2DA3_DD 7 -0.493 0.851 33.669 -0.122 0.425 3.290 33.545 B B -2 -1 11.375 D D 2 1 3.542 6.510 0.594 -1.236 BB_DG-2DC-1:DG1DC2_DD 8 4.074 -7.118 32.679 -3.273 -0.321 3.240 37.730 B B -1 1 22.994 D D 1 -1 3.527 14.509 -0.335 -0.049 BB_DC-1DG1:DC-1DG1_DD 9 1.397 -2.214 34.895 -2.098 0.712 3.268 29.199 B B 1 2 5.836 D D -1 -2 3.306 2.890 -0.764 -0.997 BB_DG1DC2:DG-2DC-1_DD 10 -9.091 18.357 27.629 -2.628 -0.530 3.191 40.642 B B 2 3 5.115 D D -2 -3 3.138 3.547 0.654 0.358 BB_DC2DA3:DT-3DG-2_DD 11 2.553 -3.682 40.417 0.134 -0.667 3.216 32.288 B B 3 4 -6.188 D D -3 -4 3.203 -3.432 -0.313 -0.160 BB_DA3DA4:DT-4DT-3_DD 12 -2.222 4.006 32.035 0.313 0.175 3.198 31.828 B B 4 5 -3.476 D D -4 -5 3.109 -1.900 0.556 -0.829 BB_DA4DT5:DA-5DT-4_DD 13 4.207 -7.697 31.500 -1.176 -0.270 3.405 35.235 B B 5 6 5.148 D D -5 -6 3.454 3.111 0.213 -0.497 BB_DT5DC6:DG-6DA-5_DD 14 1.903 -3.149 35.052 -1.307 -0.056 3.297 44.914 B B 6 7 20.822 D D -6 -7 3.455 15.592 0.659 -0.006 BB_DC6DC7:DG-7DG-6_DD 15 3.580 -4.780 42.107 -1.517 -0.516 2.645 28.977 B B 7 8 7.763 D D -7 -8 2.746 3.827 0.263 0.679 BB_DC7DA8:DT-8DG-7_DD 16 -7.766 15.752 27.680 0.645 -1.972 3.475 34.806 B B 8 9 3.928 D D -8 -9 3.606 2.330 -0.295 0.288 BB_DA8DG9:DC-9DT-8_DD 17 7.521 -12.677 33.930 0.092 1.749 3.321 37.411 B B 9 10 5.024 D D -9 -10 3.426 3.218 -0.792 -1.468 BB_DG9DT10:DA-10DC-9_DD 18 -1.547 2.415 37.246 -2.726 1.024 3.435 26.990 B B 10 11 -3.287 D D -10 -11 3.447 -1.533 0.033 0.069 BB_DT10DT11:DA-11DA-10_DD 19 1.437 -3.082 26.910 0.559 0.315 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Refinement description 1 0 2003-05-13 1 1 2008-04-29 1 2 2011-07-13 1 3 2023-08-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details CRYSTAL STRUCTURE OF A CREB BZIP-CRE COMPLEX REVEALS THE BASIS FOR CREB FAMILY SELECTIVE DIMERIZATION AND DNA BINDING RCSB Y RCSB 2003-02-06 REL REL HOH water 1DH3 PDB ENTRY 1DH3 PDB experimental model HOH 403 4 HOH HOH 403 B HOH 411 4 HOH HOH 411 B HOH 416 4 HOH HOH 416 B HOH 417 4 HOH HOH 417 B HOH 420 4 HOH HOH 420 B HOH 424 4 HOH HOH 424 B HOH 401 4 HOH HOH 401 D HOH 412 4 HOH HOH 412 D HOH 413 4 HOH HOH 413 D HOH 421 4 HOH HOH 421 D HOH 423 4 HOH HOH 423 D HOH 406 4 HOH HOH 406 A HOH 407 4 HOH HOH 407 A HOH 409 4 HOH HOH 409 A HOH 414 4 HOH HOH 414 A HOH 425 4 HOH HOH 425 A HOH 426 4 HOH HOH 426 A HOH 402 4 HOH HOH 402 C HOH 404 4 HOH HOH 404 C HOH 405 4 HOH HOH 405 C HOH 408 4 HOH HOH 408 C HOH 410 4 HOH HOH 410 C HOH 415 4 HOH HOH 415 C HOH 418 4 HOH HOH 418 C HOH 419 4 HOH HOH 419 C HOH 422 4 HOH HOH 422 C HOH 427 4 HOH HOH 427 C HOH 428 4 HOH HOH 428 C HOH 429 4 HOH HOH 429 C HOH 430 4 HOH HOH 430 C HOH 431 4 HOH HOH 431 C HOH 432 4 HOH HOH 432 C HOH 433 4 HOH HOH 433 C HOH 434 4 HOH HOH 434 C T -10 n 1 DT -10 B T -9 n 2 DT -9 B C -8 n 3 DC -8 B C -7 n 4 DC -7 B T -6 n 5 DT -6 B A -5 n 6 DA -5 B T -4 n 7 DT -4 B T -3 n 8 DT -3 B G -2 n 9 DG -2 B C -1 n 10 DC -1 B G 1 n 11 DG 1 B C 2 n 12 DC 2 B A 3 n 13 DA 3 B A 4 n 14 DA 4 B T 5 n 15 DT 5 B C 6 n 16 DC 6 B C 7 n 17 DC 7 B A 8 n 18 DA 8 B G 9 n 19 DG 9 B T 10 n 20 DT 10 B T 11 n 21 DT 11 B A -12 n 1 DA -12 D A -11 n 2 DA -11 D A -10 n 3 DA -10 D C -9 n 4 DC -9 D T -8 n 5 DT -8 D G -7 n 6 DG -7 D G -6 n 7 DG -6 D A -5 n 8 DA -5 D T -4 n 9 DT -4 D T -3 n 10 DT -3 D G -2 n 11 DG -2 D C -1 n 12 DC -1 D G 1 n 13 DG 1 D C 2 n 14 DC 2 D A 3 n 15 DA 3 D A 4 n 16 DA 4 D T 5 n 17 DT 5 D A 6 n 18 DA 6 D G 7 n 19 DG 7 D G 8 n 20 DG 8 D A 9 n 21 DA 9 D n 1 279 A n 2 280 A ASN 281 n 3 ASN 281 A SER 282 n 4 SER 282 A ASN 283 n 5 ASN 283 A GLU 284 n 6 GLU 284 A TYR 285 n 7 TYR 285 A ARG 286 n 8 ARG 286 A VAL 287 n 9 VAL 287 A ARG 288 n 10 ARG 288 A ARG 289 n 11 ARG 289 A GLU 290 n 12 GLU 290 A ARG 291 n 13 ARG 291 A ASN 292 n 14 ASN 292 A ASN 293 n 15 ASN 293 A ILE 294 n 16 ILE 294 A ALA 295 n 17 ALA 295 A VAL 296 n 18 VAL 296 A ARG 297 n 19 ARG 297 A LYS 298 n 20 LYS 298 A SER 299 n 21 SER 299 A ARG 300 n 22 ARG 300 A ASP 301 n 23 ASP 301 A LYS 302 n 24 LYS 302 A ALA 303 n 25 ALA 303 A LYS 304 n 26 LYS 304 A GLN 305 n 27 GLN 305 A ARG 306 n 28 ARG 306 A ASN 307 n 29 ASN 307 A VAL 308 n 30 VAL 308 A GLU 309 n 31 GLU 309 A THR 310 n 32 THR 310 A GLN 311 n 33 GLN 311 A GLN 312 n 34 GLN 312 A LYS 313 n 35 LYS 313 A VAL 314 n 36 VAL 314 A LEU 315 n 37 LEU 315 A GLU 316 n 38 GLU 316 A LEU 317 n 39 LEU 317 A THR 318 n 40 THR 318 A SER 319 n 41 SER 319 A ASP 320 n 42 ASP 320 A ASN 321 n 43 ASN 321 A ASP 322 n 44 ASP 322 A ARG 323 n 45 ARG 323 A LEU 324 n 46 LEU 324 A ARG 325 n 47 ARG 325 A LYS 326 n 48 LYS 326 A ARG 327 n 49 ARG 327 A VAL 328 n 50 VAL 328 A GLU 329 n 51 GLU 329 A GLN 330 n 52 GLN 330 A LEU 331 n 53 LEU 331 A SER 332 n 54 SER 332 A ARG 333 n 55 ARG 333 A GLU 334 n 56 GLU 334 A LEU 335 n 57 LEU 335 A ASP 336 n 58 ASP 336 A THR 337 n 59 THR 337 A LEU 338 n 60 LEU 338 A ARG 339 n 61 ARG 339 A GLY 340 n 62 GLY 340 A n 1 279 C n 2 280 C ASN 281 n 3 ASN 281 C SER 282 n 4 SER 282 C ASN 283 n 5 ASN 283 C GLU 284 n 6 GLU 284 C TYR 285 n 7 TYR 285 C ARG 286 n 8 ARG 286 C VAL 287 n 9 VAL 287 C ARG 288 n 10 ARG 288 C ARG 289 n 11 ARG 289 C GLU 290 n 12 GLU 290 C ARG 291 n 13 ARG 291 C ASN 292 n 14 ASN 292 C ASN 293 n 15 ASN 293 C ILE 294 n 16 ILE 294 C ALA 295 n 17 ALA 295 C VAL 296 n 18 VAL 296 C ARG 297 n 19 ARG 297 C LYS 298 n 20 LYS 298 C SER 299 n 21 SER 299 C ARG 300 n 22 ARG 300 C ASP 301 n 23 ASP 301 C LYS 302 n 24 LYS 302 C ALA 303 n 25 ALA 303 C LYS 304 n 26 LYS 304 C GLN 305 n 27 GLN 305 C ARG 306 n 28 ARG 306 C ASN 307 n 29 ASN 307 C VAL 308 n 30 VAL 308 C GLU 309 n 31 GLU 309 C THR 310 n 32 THR 310 C GLN 311 n 33 GLN 311 C GLN 312 n 34 GLN 312 C LYS 313 n 35 LYS 313 C VAL 314 n 36 VAL 314 C LEU 315 n 37 LEU 315 C GLU 316 n 38 GLU 316 C LEU 317 n 39 LEU 317 C THR 318 n 40 THR 318 C SER 319 n 41 SER 319 C ASP 320 n 42 ASP 320 C ASN 321 n 43 ASN 321 C ASP 322 n 44 ASP 322 C ARG 323 n 45 ARG 323 C LEU 324 n 46 LEU 324 C ARG 325 n 47 ARG 325 C LYS 326 n 48 LYS 326 C ARG 327 n 49 ARG 327 C VAL 328 n 50 VAL 328 C GLU 329 n 51 GLU 329 C GLN 330 n 52 GLN 330 C LEU 331 n 53 LEU 331 C SER 332 n 54 SER 332 C ARG 333 n 55 ARG 333 C GLU 334 n 56 GLU 334 C LEU 335 n 57 LEU 335 C ASP 336 n 58 ASP 336 C THR 337 n 59 THR 337 C LEU 338 n 60 LEU 338 C ARG 339 n 61 ARG 339 C GLY 340 n 62 GLY 340 C author_defined_assembly 4 tetrameric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A GLY 279 C GLY 1 1 Y 1 A SER 280 C SER 2 1 Y 1 C GLY 279 D GLY 1 1 Y 1 C SER 280 D SER 2 1 Y 1 B DC -7 0.072 SIDE CHAIN 1 D DG -7 0.053 SIDE CHAIN 1 C TYR 285 0.085 SIDE CHAIN 1 -8.07 0.80 102.40 94.33 D D D C3' C2' C1' DT DT DT 5 5 5 N 1 -24.23 2.30 115.30 91.07 C C C CA CB CG LEU LEU LEU 315 315 315 N 1 A TYR 285 -25.72 -82.30 1 A ASN 293 -53.43 -5.16 1 A THR 337 -73.31 -71.80 1 A LEU 338 -35.35 -86.93 1 A ARG 339 -42.17 -79.40 1 C SER 282 -96.12 -70.65 1 C GLN 305 -43.55 -81.53 1 C GLU 309 -20.44 -57.44 PROTEIN_REP.PARAM PROTEIN.TOP DNA-RNA_REP.PARAM DNA-RNA.TOP WATER_REP.PARAM WATER.TOP ION.PARAM ION.TOP 92.0 -21.10 0.00 0.00 43.07 0.00 -21.97 0.275 0.011 0.221 0.221 2.80 38.53 630 12415 5.0 95.4 RANDOM 1483361.25 1483361.25 0.000000 1 RESTRAINED THROUGHOUT 0.0 MOLECULAR REPLACEMENT PDB ENTRY 1DH3 Engh & Huber FLAT MODEL 37.0305 0.25376 0.62 0.48 5.00 0.83 0.77 2.80 38.53 34 1909 0 855 1020 0.019 2.0 20.5 1.25 3.75 3.00 5.72 4.00 6.84 4.00 10.05 7.50 0.478 0.050 0.416 2.93 93 1331 8 6.5 90.1 78.5 2.80 40.00 1NWQ 12416 -3.0 0.076 1 19.2 17.8 95.6 0.415 2.80 2.90 2.7 91.6 refinement CNS 1.0 data reduction HKL-2000 data scaling SCALEPACK phasing AMoRE CRYSTAL STRUCTURE OF C/EBPALPHA-DNA COMPLEX 1 N N 2 N N 3 N N 3 N N 4 N N 4 N N 4 N N 4 N N A ASN 281 C ASN 3 HELX_P A ARG 339 C ARG 61 1 1 59 C ASN 281 D ASN 3 HELX_P C THR 337 D THR 59 1 2 57 hydrog DT-DA PAIR B DT -9 A N3 DT 2 1_555 D DA 9 B N1 DA 21 1_555 hydrog WATSON-CRICK B DC -8 A N3 DC 3 1_555 D DG 8 B N1 DG 20 1_555 hydrog WATSON-CRICK B DC -8 A N4 DC 3 1_555 D DG 8 B O6 DG 20 1_555 hydrog WATSON-CRICK B DC -8 A O2 DC 3 1_555 D DG 8 B N2 DG 20 1_555 hydrog WATSON-CRICK B DC -7 A N3 DC 4 1_555 D DG 7 B N1 DG 19 1_555 hydrog WATSON-CRICK B DC -7 A N4 DC 4 1_555 D DG 7 B O6 DG 19 1_555 hydrog WATSON-CRICK B DC -7 A O2 DC 4 1_555 D DG 7 B N2 DG 19 1_555 hydrog DC-DG PAIR B DC -7 A O2 DC 4 1_555 D DG 8 B N2 DG 20 1_555 hydrog WATSON-CRICK B DT -6 A N3 DT 5 1_555 D DA 6 B N1 DA 18 1_555 hydrog WATSON-CRICK B DT -6 A O4 DT 5 1_555 D DA 6 B N6 DA 18 1_555 hydrog WATSON-CRICK B DA -5 A N1 DA 6 1_555 D DT 5 B N3 DT 17 1_555 hydrog WATSON-CRICK B DA -5 A N6 DA 6 1_555 D DT 5 B O4 DT 17 1_555 hydrog WATSON-CRICK B DT -4 A N3 DT 7 1_555 D DA 4 B N1 DA 16 1_555 hydrog WATSON-CRICK B DT -4 A O4 DT 7 1_555 D DA 4 B N6 DA 16 1_555 hydrog WATSON-CRICK B DT -3 A N3 DT 8 1_555 D DA 3 B N1 DA 15 1_555 hydrog WATSON-CRICK B DT -3 A O4 DT 8 1_555 D DA 3 B N6 DA 15 1_555 hydrog WATSON-CRICK B DG -2 A N1 DG 9 1_555 D DC 2 B N3 DC 14 1_555 hydrog WATSON-CRICK B DG -2 A N2 DG 9 1_555 D DC 2 B O2 DC 14 1_555 hydrog WATSON-CRICK B DG -2 A O6 DG 9 1_555 D DC 2 B N4 DC 14 1_555 hydrog WATSON-CRICK B DC -1 A N3 DC 10 1_555 D DG 1 B N1 DG 13 1_555 hydrog WATSON-CRICK B DC -1 A N4 DC 10 1_555 D DG 1 B O6 DG 13 1_555 hydrog WATSON-CRICK B DC -1 A O2 DC 10 1_555 D DG 1 B N2 DG 13 1_555 hydrog WATSON-CRICK B DG 1 A N1 DG 11 1_555 D DC -1 B N3 DC 12 1_555 hydrog WATSON-CRICK B DG 1 A N2 DG 11 1_555 D DC -1 B O2 DC 12 1_555 hydrog WATSON-CRICK B DG 1 A O6 DG 11 1_555 D DC -1 B N4 DC 12 1_555 hydrog WATSON-CRICK B DC 2 A N3 DC 12 1_555 D DG -2 B N1 DG 11 1_555 hydrog WATSON-CRICK B DC 2 A N4 DC 12 1_555 D DG -2 B O6 DG 11 1_555 hydrog WATSON-CRICK B DC 2 A O2 DC 12 1_555 D DG -2 B N2 DG 11 1_555 hydrog WATSON-CRICK B DA 3 A N1 DA 13 1_555 D DT -3 B N3 DT 10 1_555 hydrog WATSON-CRICK B DA 3 A N6 DA 13 1_555 D DT -3 B O4 DT 10 1_555 hydrog WATSON-CRICK B DA 4 A N1 DA 14 1_555 D DT -4 B N3 DT 9 1_555 hydrog WATSON-CRICK B DA 4 A N6 DA 14 1_555 D DT -4 B O4 DT 9 1_555 hydrog WATSON-CRICK B DT 5 A N3 DT 15 1_555 D DA -5 B N1 DA 8 1_555 hydrog WATSON-CRICK B DT 5 A O4 DT 15 1_555 D DA -5 B N6 DA 8 1_555 hydrog WATSON-CRICK B DC 6 A N3 DC 16 1_555 D DG -6 B N1 DG 7 1_555 hydrog WATSON-CRICK B DC 6 A N4 DC 16 1_555 D DG -6 B O6 DG 7 1_555 hydrog WATSON-CRICK B DC 6 A O2 DC 16 1_555 D DG -6 B N2 DG 7 1_555 hydrog WATSON-CRICK B DC 7 A N3 DC 17 1_555 D DG -7 B N1 DG 6 1_555 hydrog WATSON-CRICK B DC 7 A N4 DC 17 1_555 D DG -7 B O6 DG 6 1_555 hydrog WATSON-CRICK B DC 7 A O2 DC 17 1_555 D DG -7 B N2 DG 6 1_555 hydrog WATSON-CRICK B DA 8 A N1 DA 18 1_555 D DT -8 B N3 DT 5 1_555 hydrog WATSON-CRICK B DA 8 A N6 DA 18 1_555 D DT -8 B O4 DT 5 1_555 hydrog WATSON-CRICK B DG 9 A N1 DG 19 1_555 D DC -9 B N3 DC 4 1_555 hydrog WATSON-CRICK B DG 9 A N2 DG 19 1_555 D DC -9 B O2 DC 4 1_555 hydrog WATSON-CRICK B DG 9 A O6 DG 19 1_555 D DC -9 B N4 DC 4 1_555 hydrog WATSON-CRICK B DT 10 A N3 DT 20 1_555 D DA -10 B N1 DA 3 1_555 hydrog WATSON-CRICK B DT 10 A O4 DT 20 1_555 D DA -10 B N6 DA 3 1_555 hydrog DT-DA PAIR B DT 11 A O4 DT 21 1_555 D DA -11 B N6 DA 2 1_555 TRANSCRIPTION/DNA BASIC LEUCINE ZIPPER, PROTEIN-DNA COMPLEX, TRANSCRIPTION-DNA COMPLEX CEBPA_RAT UNP 3 281 P05554 NSNEYRVRRERNNIAVRKSRDKAKQRNVETQQKVLELTSDNDRLRKRVEQLSRELDTLRG 1NWQ PDB 1 1NWQ 1NWQ PDB 2 1NWQ 281 340 1NWQ 281 340 P05554 A 1 3 62 281 340 1NWQ 281 340 P05554 C 1 3 62 -10 11 1NWQ -10 11 1NWQ B 2 1 21 -12 9 1NWQ -12 9 1NWQ D 3 1 21 1 cloning artifact GLY 279 1NWQ A P05554 UNP 1 1 cloning artifact SER 280 1NWQ A P05554 UNP 2 2 cloning artifact GLY 279 1NWQ C P05554 UNP 1 2 cloning artifact SER 280 1NWQ C P05554 UNP 2 18 P 21 21 2