1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Aramini, J.M. Cort, J.R. Huang, Y.J. Xiao, R. Acton, T.B. Ho, C.K. Shih, L.-Y. Kennedy, M.A. Montelione, G.T. Northeast Structural Genomics Consortium (NESG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Protein Sci. PRCIEI 0795 0961-8368 12 2823 2830 10.1110/ps.03359003 14627742 Solution NMR structure of the 30S ribosomal protein S28E from Pyrococcus horikoshii. 2003 10.2210/pdb1ny4/pdb pdb_00001ny4 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 9386.690 30S ribosomal protein S28E 1 man polymer no no MAEDEGYPAEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETEREAREIKSRRAAALEHHHH HH MAEDEGYPAEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETEREAREIKSRRAAALEHHHH HH A JR19 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Pyrococcus Escherichia sample RPS28E 53953 Pyrococcus horikoshii 562 Escherichia coli BL21MGK plasmid JR19-21 PET21 Northeast Structural Genomics Consortium NESG PSI, Protein Structure Initiative database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2003-09-02 1 1 2008-04-29 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_ref_seq_dif.details Y RCSB Y RCSB 2003-02-11 REL REL THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY. AUTOMATIC BACKBONE RESONANCE ASSIGNMENTS WERE MADE USING AUTOASSIGN. Manual side chain assignments. AUTOMATIC NOESY ASSIGNMENTS AS WELL AS DISTANCE AND HYDROGEN BOND RESTRAINTS WERE DETERMINED USING AUTOSTRUCTURE. DIHEDRAL ANGLE RESTRAINTS WERE DETERMINED USING HYPER AND TALOS. BACKBONE CONFORMATIONS FOR RESIDUES 1-3, 5-6, 18-20, 22-23, 34-35, 48-49, 57-71, ARE NOT WELL-DEFINED [S(PHI) + S(PSI) < 1.8] IN THIS SOLUTION NMR STRUCTURE. target function 56 10 3D 15N-NOESY, 3D 13C-NOESY (aliphatic and aromatic) 4D_13C-separated_NOESY HNHA high resolution 13C,1H-HSQC H/D exchange backbone TR experiments, and 3D TOCSYs 100 mM NaCl 6.5 ambient 293 K THE STRUCTURES ARE BASED ON A TOTAL OF 828 CONFORMATIONALLY-RESTRICTING NOE-DERIVED DISTANCE RESTRAINTS, 99 DIHEDRAL ANGLE RESTRAINTS, AND 28 HYDROGEN BOND RESTRAINTS. (13.5 CONSTRAINTS PER RESIDUE; 5.2 LONG-RANGE RESTRAINTS PER RESIDUE). STRUCTURE DETERMINATION WAS PERFORMED ITERATIVELY USING AUTOSTRUCTURE (DYANA). THE UNSTRUCTURED 11 RESIDUE C-TERMINAL TAG (AAALEHHHHHH) WAS INCLUDED IN THE STRUCTURE CALCULATIONS BUT IS OMITTED FROM THIS DEPOSITION. torsion angle dynamics 1 lowest target function 1.0 MM JR19 U-15N,13C 20 mM MES, 100 mM NaCl, 5 mM CaCl2, 10 mM DTT, 0.02% NaN3, pH 6.5 5% D2O/95% H2O 1.0 MM JR19 U-15N,13C 20 mM MES, 100 mM NaCl, 5 mM CaCl2, 10 mM DTT, 0.02% NaN3, pH 6.5 D2O 1.0 MM JR19 U-15N, 5%-13C 20 mM MES, 100 mM NaCl, 5 mM CaCl2, 10 mM DTT, 0.02% NaN3, pH 6.5 5% D2O/95% H2O Varian collection VNMR 6.1B Delaglio processing NMRPipe 2.1 Goddard data analysis Sparky 3.106 Zimmerman, Moseley, Montelione data analysis AutoAssign 1.9 Huang, Montelione refinement AutoStructure 1.1.2 Tejero, Montelione structure solution HYPER 3.2 Guntert refinement DYANA 1.5 Tejero, Montelione structure solution PdbStat 3.27 800 Varian INOVA 750 Varian INOVA 750 Varian INOVA 600 Varian INOVA 500 Varian INOVA 600 Varian UNITY MET 1 n 1 MET 1 A ALA 2 n 2 ALA 2 A GLU 3 n 3 GLU 3 A ASP 4 n 4 ASP 4 A GLU 5 n 5 GLU 5 A GLY 6 n 6 GLY 6 A TYR 7 n 7 TYR 7 A PRO 8 n 8 PRO 8 A ALA 9 n 9 ALA 9 A GLU 10 n 10 GLU 10 A VAL 11 n 11 VAL 11 A ILE 12 n 12 ILE 12 A GLU 13 n 13 GLU 13 A ILE 14 n 14 ILE 14 A ILE 15 n 15 ILE 15 A GLY 16 n 16 GLY 16 A ARG 17 n 17 ARG 17 A THR 18 n 18 THR 18 A GLY 19 n 19 GLY 19 A THR 20 n 20 THR 20 A THR 21 n 21 THR 21 A GLY 22 n 22 GLY 22 A ASP 23 n 23 ASP 23 A VAL 24 n 24 VAL 24 A THR 25 n 25 THR 25 A GLN 26 n 26 GLN 26 A VAL 27 n 27 VAL 27 A LYS 28 n 28 LYS 28 A VAL 29 n 29 VAL 29 A ARG 30 n 30 ARG 30 A ILE 31 n 31 ILE 31 A LEU 32 n 32 LEU 32 A GLU 33 n 33 GLU 33 A GLY 34 n 34 GLY 34 A ARG 35 n 35 ARG 35 A ASP 36 n 36 ASP 36 A LYS 37 n 37 LYS 37 A GLY 38 n 38 GLY 38 A ARG 39 n 39 ARG 39 A VAL 40 n 40 VAL 40 A ILE 41 n 41 ILE 41 A ARG 42 n 42 ARG 42 A ARG 43 n 43 ARG 43 A ASN 44 n 44 ASN 44 A VAL 45 n 45 VAL 45 A ARG 46 n 46 ARG 46 A GLY 47 n 47 GLY 47 A PRO 48 n 48 PRO 48 A VAL 49 n 49 VAL 49 A ARG 50 n 50 ARG 50 A VAL 51 n 51 VAL 51 A GLY 52 n 52 GLY 52 A ASP 53 n 53 ASP 53 A ILE 54 n 54 ILE 54 A LEU 55 n 55 LEU 55 A ILE 56 n 56 ILE 56 A LEU 57 n 57 LEU 57 A ARG 58 n 58 ARG 58 A GLU 59 n 59 GLU 59 A THR 60 n 60 THR 60 A GLU 61 n 61 GLU 61 A ARG 62 n 62 ARG 62 A GLU 63 n 63 GLU 63 A ALA 64 n 64 ALA 64 A ARG 65 n 65 ARG 65 A GLU 66 n 66 GLU 66 A ILE 67 n 67 ILE 67 A LYS 68 n 68 LYS 68 A SER 69 n 69 SER 69 A ARG 70 n 70 ARG 70 A ARG 71 n 71 ARG 71 A n 72 72 A n 73 73 A n 74 74 A n 75 75 A n 76 76 A n 77 77 A n 78 78 A n 79 79 A n 80 80 A n 81 81 A n 82 82 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ILE 41 A O ILE 41 A N VAL 29 A N VAL 29 A O ARG 30 A O ARG 30 A N GLU 10 A N GLU 10 A N ALA 9 A N ALA 9 A O LEU 55 A O LEU 55 1 A ALA 72 A ALA 72 1 Y 1 A ALA 73 A ALA 73 1 Y 1 A ALA 74 A ALA 74 1 Y 1 A LEU 75 A LEU 75 1 Y 1 A GLU 76 A GLU 76 1 Y 1 A HIS 77 A HIS 77 1 Y 1 A HIS 78 A HIS 78 1 Y 1 A HIS 79 A HIS 79 1 Y 1 A HIS 80 A HIS 80 1 Y 1 A HIS 81 A HIS 81 1 Y 1 A HIS 82 A HIS 82 1 Y 2 A ALA 72 A ALA 72 1 Y 2 A ALA 73 A ALA 73 1 Y 2 A ALA 74 A ALA 74 1 Y 2 A LEU 75 A LEU 75 1 Y 2 A GLU 76 A GLU 76 1 Y 2 A HIS 77 A HIS 77 1 Y 2 A HIS 78 A HIS 78 1 Y 2 A HIS 79 A HIS 79 1 Y 2 A HIS 80 A HIS 80 1 Y 2 A HIS 81 A HIS 81 1 Y 2 A HIS 82 A HIS 82 1 Y 3 A ALA 72 A ALA 72 1 Y 3 A ALA 73 A ALA 73 1 Y 3 A ALA 74 A ALA 74 1 Y 3 A LEU 75 A LEU 75 1 Y 3 A GLU 76 A GLU 76 1 Y 3 A HIS 77 A HIS 77 1 Y 3 A HIS 78 A HIS 78 1 Y 3 A HIS 79 A HIS 79 1 Y 3 A HIS 80 A HIS 80 1 Y 3 A HIS 81 A HIS 81 1 Y 3 A HIS 82 A HIS 82 1 Y 4 A ALA 72 A ALA 72 1 Y 4 A ALA 73 A ALA 73 1 Y 4 A ALA 74 A ALA 74 1 Y 4 A LEU 75 A LEU 75 1 Y 4 A GLU 76 A GLU 76 1 Y 4 A HIS 77 A HIS 77 1 Y 4 A HIS 78 A HIS 78 1 Y 4 A HIS 79 A HIS 79 1 Y 4 A HIS 80 A HIS 80 1 Y 4 A HIS 81 A HIS 81 1 Y 4 A HIS 82 A HIS 82 1 Y 5 A ALA 72 A ALA 72 1 Y 5 A ALA 73 A ALA 73 1 Y 5 A ALA 74 A ALA 74 1 Y 5 A LEU 75 A LEU 75 1 Y 5 A GLU 76 A GLU 76 1 Y 5 A HIS 77 A HIS 77 1 Y 5 A HIS 78 A HIS 78 1 Y 5 A HIS 79 A HIS 79 1 Y 5 A HIS 80 A HIS 80 1 Y 5 A HIS 81 A HIS 81 1 Y 5 A HIS 82 A HIS 82 1 Y 6 A ALA 72 A ALA 72 1 Y 6 A ALA 73 A ALA 73 1 Y 6 A ALA 74 A ALA 74 1 Y 6 A LEU 75 A LEU 75 1 Y 6 A GLU 76 A GLU 76 1 Y 6 A HIS 77 A HIS 77 1 Y 6 A HIS 78 A HIS 78 1 Y 6 A HIS 79 A HIS 79 1 Y 6 A HIS 80 A HIS 80 1 Y 6 A HIS 81 A HIS 81 1 Y 6 A HIS 82 A HIS 82 1 Y 7 A ALA 72 A ALA 72 1 Y 7 A ALA 73 A ALA 73 1 Y 7 A ALA 74 A ALA 74 1 Y 7 A LEU 75 A LEU 75 1 Y 7 A GLU 76 A GLU 76 1 Y 7 A HIS 77 A HIS 77 1 Y 7 A HIS 78 A HIS 78 1 Y 7 A HIS 79 A HIS 79 1 Y 7 A HIS 80 A HIS 80 1 Y 7 A HIS 81 A HIS 81 1 Y 7 A HIS 82 A HIS 82 1 Y 8 A ALA 72 A ALA 72 1 Y 8 A ALA 73 A ALA 73 1 Y 8 A ALA 74 A ALA 74 1 Y 8 A LEU 75 A LEU 75 1 Y 8 A GLU 76 A GLU 76 1 Y 8 A HIS 77 A HIS 77 1 Y 8 A HIS 78 A HIS 78 1 Y 8 A HIS 79 A HIS 79 1 Y 8 A HIS 80 A HIS 80 1 Y 8 A HIS 81 A HIS 81 1 Y 8 A HIS 82 A HIS 82 1 Y 9 A ALA 72 A ALA 72 1 Y 9 A ALA 73 A ALA 73 1 Y 9 A ALA 74 A ALA 74 1 Y 9 A LEU 75 A LEU 75 1 Y 9 A GLU 76 A GLU 76 1 Y 9 A HIS 77 A HIS 77 1 Y 9 A HIS 78 A HIS 78 1 Y 9 A HIS 79 A HIS 79 1 Y 9 A HIS 80 A HIS 80 1 Y 9 A HIS 81 A HIS 81 1 Y 9 A HIS 82 A HIS 82 1 Y 10 A ALA 72 A ALA 72 1 Y 10 A ALA 73 A ALA 73 1 Y 10 A ALA 74 A ALA 74 1 Y 10 A LEU 75 A LEU 75 1 Y 10 A GLU 76 A GLU 76 1 Y 10 A HIS 77 A HIS 77 1 Y 10 A HIS 78 A HIS 78 1 Y 10 A HIS 79 A HIS 79 1 Y 10 A HIS 80 A HIS 80 1 Y 10 A HIS 81 A HIS 81 1 Y 10 A HIS 82 A HIS 82 1 Y 1 A ALA 2 80.69 -56.32 1 A GLU 3 -36.65 116.50 1 A ASP 4 -151.24 20.53 1 A THR 18 -135.26 -46.56 1 A THR 20 63.73 -75.98 1 A ARG 35 64.50 -75.32 1 A LYS 37 39.01 89.08 1 A PRO 48 -74.96 -162.56 1 A ASP 53 -43.67 150.28 1 A GLU 59 -150.84 -47.93 1 A THR 60 79.96 -3.07 1 A GLU 61 47.84 -175.40 1 A ARG 62 -150.19 -59.77 1 A GLU 63 65.14 79.31 1 A ALA 64 -100.11 58.46 1 A GLU 66 61.27 65.24 1 A ARG 70 41.27 88.01 2 A ALA 2 -74.45 -143.38 2 A ASP 4 -150.34 19.61 2 A ILE 15 -80.41 -77.65 2 A THR 20 64.25 -76.00 2 A ARG 35 69.99 -76.02 2 A LYS 37 41.31 89.87 2 A PRO 48 -75.00 -166.89 2 A LEU 57 -160.00 114.93 2 A GLU 59 178.70 144.43 2 A THR 60 163.87 -34.10 2 A ALA 64 -155.69 -70.21 2 A ARG 65 82.33 -54.15 2 A LYS 68 -171.37 37.19 2 A ARG 70 39.61 90.72 3 A GLU 3 -36.80 116.72 3 A ILE 15 -94.61 -81.47 3 A THR 18 -166.26 45.36 3 A THR 20 67.02 -80.65 3 A ARG 35 84.33 -47.52 3 A ASP 36 -92.54 30.51 3 A LYS 37 -51.25 88.57 3 A THR 60 82.18 7.99 3 A ALA 64 -175.91 -64.60 3 A ARG 65 77.99 -61.68 3 A GLU 66 65.73 69.94 4 A GLU 3 -36.39 118.24 4 A ASP 4 -150.97 20.34 4 A THR 18 -145.83 56.31 4 A LYS 37 37.53 88.52 4 A ILE 56 -96.99 -135.69 4 A LEU 57 87.98 140.63 4 A GLU 59 -38.55 -29.27 4 A THR 60 -80.89 49.00 4 A ARG 62 63.70 114.60 4 A GLU 63 -162.65 67.57 4 A GLU 66 77.00 70.61 4 A LYS 68 -170.98 60.39 5 A ASP 4 -153.02 20.99 5 A THR 18 -145.95 -73.97 5 A ARG 35 68.19 -73.68 5 A LYS 37 33.30 88.42 5 A GLU 59 158.54 -23.67 5 A ARG 62 83.41 -66.52 5 A GLU 66 -153.67 -62.56 5 A ILE 67 53.46 173.28 5 A LYS 68 -170.59 49.37 6 A ALA 2 -64.66 -71.04 6 A GLU 3 77.07 124.32 6 A ASP 4 -146.61 18.10 6 A ILE 15 -84.30 -81.50 6 A LYS 37 32.91 88.32 6 A VAL 49 60.18 149.69 6 A GLU 59 -151.87 -71.75 6 A THR 60 -152.25 -47.36 6 A GLU 61 72.17 -62.80 6 A ARG 62 -42.96 106.57 6 A GLU 66 73.57 61.80 6 A ILE 67 -88.97 -148.65 6 A LYS 68 179.78 -37.60 6 A SER 69 65.65 163.38 6 A ARG 70 66.65 167.80 7 A ALA 2 -168.80 -158.64 7 A ASP 4 -140.44 15.55 7 A ILE 15 -98.31 -74.19 7 A THR 18 -154.66 57.76 7 A THR 20 64.72 -80.77 7 A LYS 37 36.64 88.42 7 A ARG 58 69.12 -60.49 7 A GLU 61 52.67 -175.88 7 A ARG 62 61.99 -88.77 7 A ALA 64 -153.29 56.44 7 A GLU 66 84.30 36.23 7 A ILE 67 36.69 -148.60 7 A LYS 68 -175.05 -39.55 7 A SER 69 60.54 169.23 8 A ALA 2 -162.18 -166.78 8 A ASP 4 -150.89 20.08 8 A LYS 37 39.14 89.36 8 A ASP 53 -40.72 150.64 8 A ARG 58 -123.00 -66.61 8 A GLU 61 -47.66 169.20 8 A GLU 63 -166.66 105.75 8 A ALA 64 -170.07 102.00 8 A GLU 66 74.12 68.86 8 A LYS 68 -170.29 37.41 9 A ALA 2 -144.11 -98.61 9 A GLU 3 -168.45 -140.49 9 A ASP 4 -152.44 20.61 9 A ILE 15 -93.48 -70.69 9 A ARG 35 64.04 -76.80 9 A LYS 37 39.72 89.34 9 A VAL 49 -167.65 -166.97 9 A GLU 61 64.56 -79.88 9 A ARG 62 82.39 106.24 9 A ILE 67 41.96 -162.17 9 A LYS 68 -172.75 47.74 9 A ARG 70 66.50 142.84 10 A ALA 2 -89.22 -88.07 10 A GLU 3 -35.25 112.51 10 A LYS 37 32.95 88.68 10 A ARG 58 -72.32 -72.26 10 A ARG 62 62.81 175.40 10 A GLU 63 38.15 73.79 10 A ARG 65 77.18 -0.41 10 A LYS 68 177.92 -34.42 10 A SER 69 75.38 -62.89 10 A ARG 70 -161.63 -63.63 Solution structure of the 30S ribosomal protein S28E from Pyrococcus horikoshii. Northeast Structural Genomics Consortium target JR19. 1 N N RNA BINDING PROTEIN JR19, AUTOSTRUCTURE, Ribosomal protein, Northeast Structural Genomics Consortium, PSI, Protein Structure Initiative, NESG, RNA binding protein RS28_PYRHO UNP 1 1 P61030 MAEDEGYPAEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETEREAREIKSRR 1 71 1NY4 1 71 P61030 A 1 1 71 1 expression tag ALA 72 1NY4 A P61030 UNP 72 1 expression tag ALA 73 1NY4 A P61030 UNP 73 1 expression tag ALA 74 1NY4 A P61030 UNP 74 1 expression tag LEU 75 1NY4 A P61030 UNP 75 1 expression tag GLU 76 1NY4 A P61030 UNP 76 1 expression tag HIS 77 1NY4 A P61030 UNP 77 1 expression tag HIS 78 1NY4 A P61030 UNP 78 1 expression tag HIS 79 1NY4 A P61030 UNP 79 1 expression tag HIS 80 1NY4 A P61030 UNP 80 1 expression tag HIS 81 1NY4 A P61030 UNP 81 1 expression tag HIS 82 1NY4 A P61030 UNP 82 4 anti-parallel anti-parallel anti-parallel A VAL 40 A VAL 40 A ARG 46 A ARG 46 A VAL 24 A VAL 24 A ILE 31 A ILE 31 A PRO 8 A PRO 8 A ILE 14 A ILE 14 A ILE 54 A ILE 54 A ILE 56 A ILE 56 1 P 1