1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Morton, C.J. Pugh, D.J.R. Campbell, I.D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Structure STRUE6 2005 0969-2126 4 705 714 10.1016/S0969-2126(96)00076-7 8805554 Solution structure and peptide binding of the SH3 domain from human Fyn. 1996 UK Embo J. EMJODG 0897 0261-4189 12 2617 Crystal Structure of the SH3 Domain in Human Fyn; Comparison of the Three-Dimensional Structures of SH3 Domains in Tyrosine Kinases and Spectrin 1993 10.2210/pdb1nyg/pdb pdb_00001nyg 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 N-TERMINAL GS FROM EXPRESSION SYSTEM 7554.108 FYN 2.7.1.112 SH3 DOMAIN, RESIDUES 82 - 148 INS(GS-T82) 1 man polymer no no TGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQAEE TGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQAEE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia Escherichia coli sample BL21 9606 Homo sapiens 469008 Escherichia coli BL21(DE3) BL21 (DE3) PGEX database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Database references Derived calculations Other 1 0 1996-11-08 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site Y BNL 1996-04-22 REL 20 BRUNGER refinement X-PLOR 3.1 n 1 82 A n 2 83 A VAL 84 n 3 VAL 84 A THR 85 n 4 THR 85 A LEU 86 n 5 LEU 86 A PHE 87 n 6 PHE 87 A VAL 88 n 7 VAL 88 A ALA 89 n 8 ALA 89 A LEU 90 n 9 LEU 90 A TYR 91 n 10 TYR 91 A ASP 92 n 11 ASP 92 A TYR 93 n 12 TYR 93 A GLU 94 n 13 GLU 94 A ALA 95 n 14 ALA 95 A ARG 96 n 15 ARG 96 A THR 97 n 16 THR 97 A GLU 98 n 17 GLU 98 A ASP 99 n 18 ASP 99 A ASP 100 n 19 ASP 100 A LEU 101 n 20 LEU 101 A SER 102 n 21 SER 102 A PHE 103 n 22 PHE 103 A HIS 104 n 23 HIS 104 A LYS 105 n 24 LYS 105 A GLY 106 n 25 GLY 106 A GLU 107 n 26 GLU 107 A LYS 108 n 27 LYS 108 A PHE 109 n 28 PHE 109 A GLN 110 n 29 GLN 110 A ILE 111 n 30 ILE 111 A LEU 112 n 31 LEU 112 A ASN 113 n 32 ASN 113 A SER 114 n 33 SER 114 A SER 115 n 34 SER 115 A GLU 116 n 35 GLU 116 A GLY 117 n 36 GLY 117 A ASP 118 n 37 ASP 118 A TRP 119 n 38 TRP 119 A TRP 120 n 39 TRP 120 A GLU 121 n 40 GLU 121 A ALA 122 n 41 ALA 122 A ARG 123 n 42 ARG 123 A SER 124 n 43 SER 124 A LEU 125 n 44 LEU 125 A THR 126 n 45 THR 126 A THR 127 n 46 THR 127 A GLY 128 n 47 GLY 128 A GLU 129 n 48 GLU 129 A THR 130 n 49 THR 130 A GLY 131 n 50 GLY 131 A TYR 132 n 51 TYR 132 A ILE 133 n 52 ILE 133 A PRO 134 n 53 PRO 134 A SER 135 n 54 SER 135 A ASN 136 n 55 ASN 136 A TYR 137 n 56 TYR 137 A VAL 138 n 57 VAL 138 A ALA 139 n 58 ALA 139 A PRO 140 n 59 PRO 140 A VAL 141 n 60 VAL 141 A n 61 142 A n 62 143 A n 63 144 A n 64 145 A n 65 146 A n 66 147 A n 67 148 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O PHE 109 A O PHE 28 A N PHE 87 A N PHE 6 A N VAL 88 A N VAL 7 A O ALA 139 A O ALA 58 A O ASN 113 A O ASN 32 A N GLU 121 A N GLU 40 A N TRP 120 A N TRP 39 A O ILE 133 A O ILE 52 1 A THR 82 A THR 1 1 Y 1 A GLY 83 A GLY 2 1 Y 1 A ASP 142 A ASP 61 1 Y 1 A SER 143 A SER 62 1 Y 1 A ILE 144 A ILE 63 1 Y 1 A GLN 145 A GLN 64 1 Y 1 A ALA 146 A ALA 65 1 Y 1 A GLU 147 A GLU 66 1 Y 1 A GLU 148 A GLU 67 1 Y 2 A THR 82 A THR 1 1 Y 2 A GLY 83 A GLY 2 1 Y 2 A ASP 142 A ASP 61 1 Y 2 A SER 143 A SER 62 1 Y 2 A ILE 144 A ILE 63 1 Y 2 A GLN 145 A GLN 64 1 Y 2 A ALA 146 A ALA 65 1 Y 2 A GLU 147 A GLU 66 1 Y 2 A GLU 148 A GLU 67 1 Y 3 A THR 82 A THR 1 1 Y 3 A GLY 83 A GLY 2 1 Y 3 A ASP 142 A ASP 61 1 Y 3 A SER 143 A SER 62 1 Y 3 A ILE 144 A ILE 63 1 Y 3 A GLN 145 A GLN 64 1 Y 3 A ALA 146 A ALA 65 1 Y 3 A GLU 147 A GLU 66 1 Y 3 A GLU 148 A GLU 67 1 Y 4 A THR 82 A THR 1 1 Y 4 A GLY 83 A GLY 2 1 Y 4 A ASP 142 A ASP 61 1 Y 4 A SER 143 A SER 62 1 Y 4 A ILE 144 A ILE 63 1 Y 4 A GLN 145 A GLN 64 1 Y 4 A ALA 146 A ALA 65 1 Y 4 A GLU 147 A GLU 66 1 Y 4 A GLU 148 A GLU 67 1 Y 5 A THR 82 A THR 1 1 Y 5 A GLY 83 A GLY 2 1 Y 5 A ASP 142 A ASP 61 1 Y 5 A SER 143 A SER 62 1 Y 5 A ILE 144 A ILE 63 1 Y 5 A GLN 145 A GLN 64 1 Y 5 A ALA 146 A ALA 65 1 Y 5 A GLU 147 A GLU 66 1 Y 5 A GLU 148 A GLU 67 1 Y 6 A THR 82 A THR 1 1 Y 6 A GLY 83 A GLY 2 1 Y 6 A ASP 142 A ASP 61 1 Y 6 A SER 143 A SER 62 1 Y 6 A ILE 144 A ILE 63 1 Y 6 A GLN 145 A GLN 64 1 Y 6 A ALA 146 A ALA 65 1 Y 6 A GLU 147 A GLU 66 1 Y 6 A GLU 148 A GLU 67 1 Y 7 A THR 82 A THR 1 1 Y 7 A GLY 83 A GLY 2 1 Y 7 A ASP 142 A ASP 61 1 Y 7 A SER 143 A SER 62 1 Y 7 A ILE 144 A ILE 63 1 Y 7 A GLN 145 A GLN 64 1 Y 7 A ALA 146 A ALA 65 1 Y 7 A GLU 147 A GLU 66 1 Y 7 A GLU 148 A GLU 67 1 Y 8 A THR 82 A THR 1 1 Y 8 A GLY 83 A GLY 2 1 Y 8 A ASP 142 A ASP 61 1 Y 8 A SER 143 A SER 62 1 Y 8 A ILE 144 A ILE 63 1 Y 8 A GLN 145 A GLN 64 1 Y 8 A ALA 146 A ALA 65 1 Y 8 A GLU 147 A GLU 66 1 Y 8 A GLU 148 A GLU 67 1 Y 9 A THR 82 A THR 1 1 Y 9 A GLY 83 A GLY 2 1 Y 9 A ASP 142 A ASP 61 1 Y 9 A SER 143 A SER 62 1 Y 9 A ILE 144 A ILE 63 1 Y 9 A GLN 145 A GLN 64 1 Y 9 A ALA 146 A ALA 65 1 Y 9 A GLU 147 A GLU 66 1 Y 9 A GLU 148 A GLU 67 1 Y 10 A THR 82 A THR 1 1 Y 10 A GLY 83 A GLY 2 1 Y 10 A ASP 142 A ASP 61 1 Y 10 A SER 143 A SER 62 1 Y 10 A ILE 144 A ILE 63 1 Y 10 A GLN 145 A GLN 64 1 Y 10 A ALA 146 A ALA 65 1 Y 10 A GLU 147 A GLU 66 1 Y 10 A GLU 148 A GLU 67 1 Y 11 A THR 82 A THR 1 1 Y 11 A GLY 83 A GLY 2 1 Y 11 A ASP 142 A ASP 61 1 Y 11 A SER 143 A SER 62 1 Y 11 A ILE 144 A ILE 63 1 Y 11 A GLN 145 A GLN 64 1 Y 11 A ALA 146 A ALA 65 1 Y 11 A GLU 147 A GLU 66 1 Y 11 A GLU 148 A GLU 67 1 Y 12 A THR 82 A THR 1 1 Y 12 A GLY 83 A GLY 2 1 Y 12 A ASP 142 A ASP 61 1 Y 12 A SER 143 A SER 62 1 Y 12 A ILE 144 A ILE 63 1 Y 12 A GLN 145 A GLN 64 1 Y 12 A ALA 146 A ALA 65 1 Y 12 A GLU 147 A GLU 66 1 Y 12 A GLU 148 A GLU 67 1 Y 13 A THR 82 A THR 1 1 Y 13 A GLY 83 A GLY 2 1 Y 13 A ASP 142 A ASP 61 1 Y 13 A SER 143 A SER 62 1 Y 13 A ILE 144 A ILE 63 1 Y 13 A GLN 145 A GLN 64 1 Y 13 A ALA 146 A ALA 65 1 Y 13 A GLU 147 A GLU 66 1 Y 13 A GLU 148 A GLU 67 1 Y 14 A THR 82 A THR 1 1 Y 14 A GLY 83 A GLY 2 1 Y 14 A ASP 142 A ASP 61 1 Y 14 A SER 143 A SER 62 1 Y 14 A ILE 144 A ILE 63 1 Y 14 A GLN 145 A GLN 64 1 Y 14 A ALA 146 A ALA 65 1 Y 14 A GLU 147 A GLU 66 1 Y 14 A GLU 148 A GLU 67 1 Y 15 A THR 82 A THR 1 1 Y 15 A GLY 83 A GLY 2 1 Y 15 A ASP 142 A ASP 61 1 Y 15 A SER 143 A SER 62 1 Y 15 A ILE 144 A ILE 63 1 Y 15 A GLN 145 A GLN 64 1 Y 15 A ALA 146 A ALA 65 1 Y 15 A GLU 147 A GLU 66 1 Y 15 A GLU 148 A GLU 67 1 Y 16 A THR 82 A THR 1 1 Y 16 A GLY 83 A GLY 2 1 Y 16 A ASP 142 A ASP 61 1 Y 16 A SER 143 A SER 62 1 Y 16 A ILE 144 A ILE 63 1 Y 16 A GLN 145 A GLN 64 1 Y 16 A ALA 146 A ALA 65 1 Y 16 A GLU 147 A GLU 66 1 Y 16 A GLU 148 A GLU 67 1 Y 17 A THR 82 A THR 1 1 Y 17 A GLY 83 A GLY 2 1 Y 17 A ASP 142 A ASP 61 1 Y 17 A SER 143 A SER 62 1 Y 17 A ILE 144 A ILE 63 1 Y 17 A GLN 145 A GLN 64 1 Y 17 A ALA 146 A ALA 65 1 Y 17 A GLU 147 A GLU 66 1 Y 17 A GLU 148 A GLU 67 1 Y 18 A THR 82 A THR 1 1 Y 18 A GLY 83 A GLY 2 1 Y 18 A ASP 142 A ASP 61 1 Y 18 A SER 143 A SER 62 1 Y 18 A ILE 144 A ILE 63 1 Y 18 A GLN 145 A GLN 64 1 Y 18 A ALA 146 A ALA 65 1 Y 18 A GLU 147 A GLU 66 1 Y 18 A GLU 148 A GLU 67 1 Y 19 A THR 82 A THR 1 1 Y 19 A GLY 83 A GLY 2 1 Y 19 A ASP 142 A ASP 61 1 Y 19 A SER 143 A SER 62 1 Y 19 A ILE 144 A ILE 63 1 Y 19 A GLN 145 A GLN 64 1 Y 19 A ALA 146 A ALA 65 1 Y 19 A GLU 147 A GLU 66 1 Y 19 A GLU 148 A GLU 67 1 Y 20 A THR 82 A THR 1 1 Y 20 A GLY 83 A GLY 2 1 Y 20 A ASP 142 A ASP 61 1 Y 20 A SER 143 A SER 62 1 Y 20 A ILE 144 A ILE 63 1 Y 20 A GLN 145 A GLN 64 1 Y 20 A ALA 146 A ALA 65 1 Y 20 A GLU 147 A GLU 66 1 Y 20 A GLU 148 A GLU 67 1 Y 1 A ARG 96 0.291 SIDE CHAIN 1 A ARG 123 0.312 SIDE CHAIN 2 A ARG 96 0.123 SIDE CHAIN 2 A ARG 123 0.217 SIDE CHAIN 3 A ARG 96 0.307 SIDE CHAIN 3 A ARG 123 0.197 SIDE CHAIN 4 A ARG 96 0.317 SIDE CHAIN 4 A ARG 123 0.263 SIDE CHAIN 5 A ARG 96 0.280 SIDE CHAIN 5 A ARG 123 0.257 SIDE CHAIN 6 A ARG 96 0.237 SIDE CHAIN 6 A ARG 123 0.307 SIDE CHAIN 7 A ARG 96 0.231 SIDE CHAIN 7 A ARG 123 0.314 SIDE CHAIN 8 A ARG 96 0.250 SIDE CHAIN 8 A ARG 123 0.299 SIDE CHAIN 9 A ARG 96 0.136 SIDE CHAIN 9 A ARG 123 0.274 SIDE CHAIN 10 A ARG 96 0.247 SIDE CHAIN 10 A ARG 123 0.270 SIDE CHAIN 11 A ARG 96 0.090 SIDE CHAIN 11 A ARG 123 0.246 SIDE CHAIN 12 A ARG 96 0.316 SIDE CHAIN 12 A ARG 123 0.233 SIDE CHAIN 13 A ARG 96 0.317 SIDE CHAIN 13 A ARG 123 0.314 SIDE CHAIN 14 A ARG 96 0.266 SIDE CHAIN 14 A ARG 123 0.285 SIDE CHAIN 15 A ARG 96 0.297 SIDE CHAIN 15 A ARG 123 0.078 SIDE CHAIN 16 A ARG 96 0.258 SIDE CHAIN 16 A ARG 123 0.318 SIDE CHAIN 17 A ARG 96 0.300 SIDE CHAIN 17 A ARG 123 0.174 SIDE CHAIN 18 A ARG 96 0.187 SIDE CHAIN 18 A ARG 123 0.314 SIDE CHAIN 19 A ARG 123 0.306 SIDE CHAIN 20 A ARG 96 0.318 SIDE CHAIN 20 A ARG 123 0.304 SIDE CHAIN 1 A THR 85 -150.46 86.69 1 A ALA 95 -41.85 103.73 1 A SER 114 -109.39 -81.96 1 A GLU 116 40.15 -161.77 1 A ASP 118 -176.59 -36.50 2 A ALA 95 -52.25 96.47 2 A THR 97 -119.66 -169.75 2 A PHE 103 -172.83 -178.36 2 A SER 114 -155.79 84.95 2 A SER 115 -119.68 -79.25 2 A GLU 116 -106.18 -166.28 3 A THR 85 -162.12 65.23 3 A ALA 95 -46.53 93.22 3 A PHE 103 -178.64 -173.03 3 A SER 114 -161.52 82.90 3 A SER 115 -160.55 23.22 4 A ALA 95 -56.96 107.58 4 A ASP 118 -160.23 -74.46 4 A THR 126 -102.33 -64.64 5 A PHE 103 -161.98 -169.99 5 A THR 127 -91.79 -67.85 6 A THR 85 -150.85 79.97 6 A ALA 95 -42.05 96.48 6 A SER 114 -150.77 23.30 6 A ASP 118 -175.41 -41.56 7 A THR 85 -171.27 63.90 7 A PHE 103 -174.48 -173.75 7 A SER 114 -163.86 87.28 7 A SER 115 -92.44 53.79 7 A GLU 116 49.40 100.55 8 A ALA 95 -48.25 108.28 8 A PHE 103 -179.22 -172.51 8 A SER 114 -118.45 -102.11 8 A SER 115 38.64 47.27 8 A ASP 118 -152.23 25.10 9 A ALA 95 -51.64 97.88 9 A SER 114 -116.97 70.66 9 A SER 115 -89.06 -81.13 9 A ASP 118 -139.99 -55.47 10 A ALA 95 -56.46 107.66 10 A PHE 103 -175.21 -173.10 10 A SER 114 -107.41 48.55 10 A GLU 116 -104.65 -166.06 11 A THR 85 -164.75 87.90 11 A LYS 105 -55.76 109.73 11 A ILE 111 -50.23 101.03 11 A SER 114 -152.01 -87.20 11 A SER 115 44.41 27.58 11 A ASP 118 175.74 -39.20 12 A THR 85 -154.12 66.51 12 A PHE 103 174.39 -171.34 12 A SER 114 -96.92 -79.19 12 A GLU 116 46.94 -173.11 12 A ASP 118 -170.61 -49.21 12 A THR 126 -86.89 -70.46 13 A PHE 103 -178.88 -176.31 13 A ASP 118 -176.76 -53.44 13 A THR 126 -84.77 -70.26 14 A ALA 95 -53.16 103.56 14 A PHE 103 -174.01 -174.29 14 A SER 115 -93.63 -84.33 14 A ASP 118 -176.73 -63.71 15 A THR 85 -168.83 85.63 15 A PHE 103 179.79 -174.93 15 A SER 114 -150.83 84.01 15 A SER 115 -97.38 -78.96 15 A GLU 116 -127.91 -169.25 16 A SER 102 77.18 138.53 16 A PHE 103 -177.53 -171.99 16 A SER 114 -136.20 -77.21 16 A GLU 116 44.62 95.14 16 A ASP 118 -164.60 -36.96 16 A THR 126 -91.99 -73.30 17 A GLU 94 -115.51 69.32 17 A SER 114 -142.44 36.95 18 A GLU 94 -111.07 73.70 18 A GLU 116 -65.68 -171.85 19 A ALA 95 -42.96 95.77 19 A PHE 103 -177.28 -169.99 19 A SER 115 -169.27 33.26 20 A PHE 103 -168.04 -169.78 20 A GLU 116 -72.46 -163.33 20 A ASP 118 178.55 -36.95 model building X-PLOR 3.1 refinement X-PLOR 3.1 phasing X-PLOR 3.1 NMR STUDY OF THE SH3 DOMAIN FROM FYN PROTO-ONCOGENE TYROSINE KINASE, FAMILY OF 20 STRUCTURES 1 Y N A PRO 134 A PRO 53 HELX_P A TYR 137 A TYR 56 5 HA 4 PHOSPHOTRANSFERASE SH3 DOMAIN, POLYPROLINE-BINDING, PHOSPHOTRANSFERASE FYN_HUMAN UNP 1 1 P06241 GCVQCKDKEATKLTEERDGSLNQSSGYRYGTDPTPQHYPSFGVTSIPNYNNFHAAGGQGLTVFGGVNSSSHTGTLRTRGG TGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQAEEWYFGKLGRKDAER QLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNGGYYITTRAQFETLQQLVQHYSERAAGLCCR LVVPCHKGMPRLTDLSVKTKDVWEIPRESLQLIKRLGNGQFGEVWMGTWNGNTKVAIKTLKPGTMSPESFLEEAQIMKKL KHDKLVQLYAVVSEEPIYIVTEYMNKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGNG LICKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVER GYRMPCPQDCPISLHELMIHCWKKDPEERPTFEYLQSFLEDYFTATEPQYQPGENL 81 147 1NYG 82 148 P06241 A 1 1 67 3 3 anti-parallel anti-parallel anti-parallel anti-parallel A LYS 108 A LYS 27 A LEU 112 A LEU 31 A LEU 86 A LEU 5 A ALA 89 A ALA 8 A VAL 138 A VAL 57 A PRO 140 A PRO 59 A ASN 113 A ASN 32 A SER 114 A SER 33 A TRP 119 A TRP 38 A SER 124 A SER 43 A THR 130 A THR 49 A ILE 133 A ILE 52 1 P 1