0.014063 0.000000 0.002688 0.000000 0.013897 0.000000 0.000000 0.000000 0.013916 0.00000 0.00000 0.00000 Lange, U.E. Bauke, D. Hornberger, W. Mack, H. Seitz, W. Hoeffken, H.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 100.82 90.00 71.110 71.960 73.160 C23 H32 N6 O4 456.538 (2-{2-[(5-CARBAMIMIDOYL-1-METHYL-1H-PYRROL-3-YLMETHYL)-CARBAMOYL]-PYRROL-1-YL} -1-CYCLOHEXYLMETHYL-2-OXO-ETHYLAMINO)-ACETIC ACID peptide-like C3 H7 N O2 89.093 y ALANINE L-peptide linking C9 H17 N O2 171.237 n 2-AMINO-3-CYCLOHEXYL-PROPIONIC ACID L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C5 H9 N O3 131.130 n 4-HYDROXYPROLINE HYDROXYPROLINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H6 O4 118.088 SUCCINIC ACID non-polymer C10 H13 N O5 S 259.279 n 4-SULFOMETHYL-L-PHENYLALANINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Bioorg.Med.Chem.Lett. BMCLE8 1127 0960-894X 13 2029 2033 10.1016/S0960-894X(03)00236-1 12781189 D-Phe-Pro-Arg type thrombin inhibitors: unexpected selectivity by modification of the P1 moiety 2003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 295.0 1 goebel mirrors AREA DETECTOR 1997-12-07 SIEMENS HI-STAR goebel mirror SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 4096.534 Thrombin light chain 3.4.21.5 light chain 1 man polymer 29780.219 Thrombin heavy chain 3.4.21.5 heavy chain 1 man polymer 1514.605 Decapeptide Hirudin Analogue 1 syn polymer 456.538 (2-{2-[(5-CARBAMIMIDOYL-1-METHYL-1H-PYRROL-3-YLMETHYL)-CARBAMOYL]-PYRROL-1-YL} -1-CYCLOHEXYLMETHYL-2-OXO-ETHYLAMINO)-ACETIC ACID 1 syn non-polymer 18.015 water 144 nat water Coagulation factor II Coagulation factor II E.C.3.4.21.5 E.C.3.4.21.5 no no TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR L polypeptide(L) no no IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE H polypeptide(L) no yes (SIN)YEPI(HYP)EE(SMF)(ALC)Q XYEPIPEEFAQ D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample F2 9606 blood Homo sapiens 562 Escherichia coli plasmid human Homo Escherichia sample F2 9606 blood Homo sapiens 562 Escherichia coli plasmid 1 2.60 52.62 VAPOR DIFFUSION, SITTING DROP 8.5 PEG 400, Na-acetate, Tris, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K 298.0 software diffrn_source repository Initial release Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance Other Source and taxonomy Refinement description Data collection 1 0 2003-10-14 1 1 2008-04-29 1 2 2011-07-13 1 3 2012-12-12 1 4 2016-05-25 1 5 2017-10-11 1 6 2018-04-04 _diffrn_source.type human Thrombin with a different inhibitor Same crystal form with different C-terminal hirudin derived peptide RCSB Y RCSB 2003-02-19 REL 162 (2-{2-[(5-CARBAMIMIDOYL-1-METHYL-1H-PYRROL-3-YLMETHYL)-CARBAMOYL]-PYRROL-1-YL} -1-CYCLOHEXYLMETHYL-2-OXO-ETHYLAMINO)-ACETIC ACID HOH water 6421 Hirudo medicinalis sample Anticoagulant, Antithrombotic DECAPEPTIDE HIRUDIN ANALOGUE Oligopeptide 162 179 4 162 162 248 H HOH 1 5 HOH HOH 18 L HOH 3 5 HOH HOH 19 L HOH 6 5 HOH HOH 20 L HOH 18 5 HOH HOH 21 L HOH 19 5 HOH HOH 22 L HOH 20 5 HOH HOH 23 L HOH 21 5 HOH HOH 24 L HOH 22 5 HOH HOH 25 L HOH 98 5 HOH HOH 26 L HOH 149 5 HOH HOH 27 L HOH 168 5 HOH HOH 28 L HOH 2 5 HOH HOH 249 H HOH 4 5 HOH HOH 250 H HOH 7 5 HOH HOH 251 H HOH 8 5 HOH HOH 252 H HOH 9 5 HOH HOH 253 H HOH 10 5 HOH HOH 254 H HOH 11 5 HOH HOH 255 H HOH 12 5 HOH HOH 256 H HOH 13 5 HOH HOH 257 H HOH 14 5 HOH HOH 258 H HOH 15 5 HOH HOH 259 H HOH 16 5 HOH HOH 260 H HOH 17 5 HOH HOH 261 H HOH 24 5 HOH HOH 262 H HOH 25 5 HOH HOH 263 H HOH 27 5 HOH HOH 264 H HOH 28 5 HOH HOH 265 H HOH 29 5 HOH HOH 266 H HOH 31 5 HOH HOH 267 H HOH 33 5 HOH HOH 268 H HOH 34 5 HOH HOH 269 H HOH 35 5 HOH HOH 270 H HOH 37 5 HOH HOH 271 H HOH 38 5 HOH HOH 272 H HOH 40 5 HOH HOH 273 H HOH 41 5 HOH HOH 274 H HOH 42 5 HOH HOH 275 H HOH 45 5 HOH HOH 276 H HOH 47 5 HOH HOH 277 H HOH 48 5 HOH HOH 278 H HOH 49 5 HOH HOH 279 H HOH 50 5 HOH HOH 280 H HOH 51 5 HOH HOH 281 H HOH 52 5 HOH HOH 282 H HOH 53 5 HOH HOH 283 H HOH 54 5 HOH HOH 284 H HOH 55 5 HOH HOH 285 H HOH 56 5 HOH HOH 286 H HOH 57 5 HOH HOH 287 H HOH 58 5 HOH HOH 288 H HOH 59 5 HOH HOH 289 H HOH 60 5 HOH HOH 290 H HOH 62 5 HOH HOH 291 H HOH 63 5 HOH HOH 292 H HOH 65 5 HOH HOH 293 H HOH 66 5 HOH HOH 294 H HOH 67 5 HOH HOH 295 H HOH 69 5 HOH HOH 296 H HOH 71 5 HOH HOH 297 H HOH 72 5 HOH HOH 298 H HOH 73 5 HOH HOH 299 H HOH 74 5 HOH HOH 300 H HOH 75 5 HOH HOH 301 H HOH 76 5 HOH HOH 302 H HOH 77 5 HOH HOH 303 H HOH 78 5 HOH HOH 304 H HOH 79 5 HOH HOH 305 H HOH 80 5 HOH HOH 306 H HOH 81 5 HOH HOH 307 H HOH 82 5 HOH HOH 308 H HOH 84 5 HOH HOH 309 H HOH 85 5 HOH HOH 310 H HOH 86 5 HOH HOH 311 H HOH 87 5 HOH HOH 312 H HOH 88 5 HOH HOH 313 H HOH 89 5 HOH HOH 314 H HOH 90 5 HOH HOH 315 H HOH 91 5 HOH HOH 316 H HOH 93 5 HOH HOH 317 H HOH 94 5 HOH HOH 318 H HOH 95 5 HOH HOH 319 H HOH 97 5 HOH HOH 320 H HOH 99 5 HOH HOH 321 H HOH 102 5 HOH HOH 322 H HOH 103 5 HOH HOH 323 H HOH 104 5 HOH HOH 324 H HOH 105 5 HOH HOH 325 H HOH 106 5 HOH HOH 326 H HOH 107 5 HOH HOH 327 H HOH 108 5 HOH HOH 328 H HOH 109 5 HOH HOH 329 H HOH 110 5 HOH HOH 330 H HOH 111 5 HOH HOH 331 H HOH 112 5 HOH HOH 332 H HOH 113 5 HOH HOH 333 H HOH 114 5 HOH HOH 334 H HOH 115 5 HOH HOH 335 H HOH 116 5 HOH HOH 336 H HOH 117 5 HOH HOH 337 H HOH 118 5 HOH HOH 338 H HOH 120 5 HOH HOH 339 H HOH 121 5 HOH HOH 340 H HOH 123 5 HOH HOH 341 H HOH 124 5 HOH HOH 342 H HOH 125 5 HOH HOH 343 H HOH 127 5 HOH HOH 344 H HOH 128 5 HOH HOH 345 H HOH 129 5 HOH HOH 346 H HOH 130 5 HOH HOH 347 H HOH 131 5 HOH HOH 348 H HOH 132 5 HOH HOH 349 H HOH 135 5 HOH HOH 350 H HOH 137 5 HOH HOH 351 H HOH 141 5 HOH HOH 352 H HOH 142 5 HOH HOH 353 H HOH 143 5 HOH HOH 354 H HOH 144 5 HOH HOH 355 H HOH 146 5 HOH HOH 356 H HOH 147 5 HOH HOH 357 H HOH 150 5 HOH HOH 358 H HOH 151 5 HOH HOH 359 H HOH 152 5 HOH HOH 360 H HOH 153 5 HOH HOH 361 H HOH 154 5 HOH HOH 362 H HOH 156 5 HOH HOH 363 H HOH 158 5 HOH HOH 364 H HOH 160 5 HOH HOH 365 H HOH 161 5 HOH HOH 366 H HOH 162 5 HOH HOH 367 H HOH 164 5 HOH HOH 368 H HOH 166 5 HOH HOH 369 H HOH 167 5 HOH HOH 370 H HOH 170 5 HOH HOH 371 H HOH 172 5 HOH HOH 372 H HOH 173 5 HOH HOH 373 H HOH 174 5 HOH HOH 374 H HOH 175 5 HOH HOH 375 H HOH 176 5 HOH HOH 376 H HOH 177 5 HOH HOH 377 H HOH 178 5 HOH HOH 378 H HOH 39 5 HOH HOH 39 D HOH 43 5 HOH HOH 43 D HOH 139 5 HOH HOH 139 D n 1 -5 L n 2 -4 L n 3 -3 L n 4 -2 L n 5 -1 L n 6 0 L ALA 1 n 7 B ALA 1 L ASP 1 n 8 A ASP 1 L CYS 1 n 9 CYS 1 L GLY 2 n 10 GLY 2 L LEU 3 n 11 LEU 3 L ARG 4 n 12 ARG 4 L PRO 5 n 13 PRO 5 L LEU 6 n 14 LEU 6 L PHE 7 n 15 PHE 7 L GLU 8 n 16 GLU 8 L LYS 9 n 17 LYS 9 L LYS 10 n 18 LYS 10 L SER 11 n 19 SER 11 L LEU 12 n 20 LEU 12 L GLU 13 n 21 GLU 13 L ASP 14 n 22 ASP 14 L LYS 14 n 23 A LYS 14 L THR 14 n 24 B THR 14 L GLU 14 n 25 C GLU 14 L ARG 14 n 26 D ARG 14 L GLU 14 n 27 E GLU 14 L LEU 14 n 28 F LEU 14 L LEU 14 n 29 G LEU 14 L GLU 14 n 30 H GLU 14 L SER 14 n 31 I SER 14 L TYR 14 n 32 J TYR 14 L ILE 14 n 33 K ILE 14 L ASP 15 n 34 ASP 15 L n 35 16 L n 36 17 L ILE 16 n 1 ILE 16 H VAL 17 n 2 VAL 17 H GLU 18 n 3 GLU 18 H GLY 19 n 4 GLY 19 H SER 20 n 5 SER 20 H ASP 21 n 6 ASP 21 H ALA 22 n 7 ALA 22 H GLU 23 n 8 GLU 23 H ILE 24 n 9 ILE 24 H GLY 25 n 10 GLY 25 H MET 26 n 11 MET 26 H SER 27 n 12 SER 27 H PRO 28 n 13 PRO 28 H TRP 29 n 14 TRP 29 H GLN 30 n 15 GLN 30 H VAL 31 n 16 VAL 31 H MET 32 n 17 MET 32 H LEU 33 n 18 LEU 33 H PHE 34 n 19 PHE 34 H ARG 35 n 20 ARG 35 H LYS 36 n 21 LYS 36 H SER 36 n 22 A SER 36 H PRO 37 n 23 PRO 37 H GLN 38 n 24 GLN 38 H GLU 39 n 25 GLU 39 H LEU 40 n 26 LEU 40 H LEU 41 n 27 LEU 41 H CYS 42 n 28 CYS 42 H GLY 43 n 29 GLY 43 H ALA 44 n 30 ALA 44 H SER 45 n 31 SER 45 H LEU 46 n 32 LEU 46 H ILE 47 n 33 ILE 47 H SER 48 n 34 SER 48 H ASP 49 n 35 ASP 49 H ARG 50 n 36 ARG 50 H TRP 51 n 37 TRP 51 H VAL 52 n 38 VAL 52 H LEU 53 n 39 LEU 53 H THR 54 n 40 THR 54 H ALA 55 n 41 ALA 55 H ALA 56 n 42 ALA 56 H HIS 57 n 43 HIS 57 H CYS 58 n 44 CYS 58 H LEU 59 n 45 LEU 59 H LEU 60 n 46 LEU 60 H TYR 60 n 47 A TYR 60 H PRO 60 n 48 B PRO 60 H PRO 60 n 49 C PRO 60 H TRP 60 n 50 D TRP 60 H ASP 60 n 51 E ASP 60 H LYS 60 n 52 F LYS 60 H ASN 60 n 53 G ASN 60 H PHE 60 n 54 H PHE 60 H THR 60 n 55 I THR 60 H GLU 61 n 56 GLU 61 H ASN 62 n 57 ASN 62 H ASP 63 n 58 ASP 63 H LEU 64 n 59 LEU 64 H LEU 65 n 60 LEU 65 H VAL 66 n 61 VAL 66 H ARG 67 n 62 ARG 67 H ILE 68 n 63 ILE 68 H GLY 69 n 64 GLY 69 H LYS 70 n 65 LYS 70 H HIS 71 n 66 HIS 71 H SER 72 n 67 SER 72 H ARG 73 n 68 ARG 73 H THR 74 n 69 THR 74 H ARG 75 n 70 ARG 75 H TYR 76 n 71 TYR 76 H GLU 77 n 72 GLU 77 H ARG 77 n 73 A ARG 77 H ASN 78 n 74 ASN 78 H ILE 79 n 75 ILE 79 H GLU 80 n 76 GLU 80 H LYS 81 n 77 LYS 81 H ILE 82 n 78 ILE 82 H SER 83 n 79 SER 83 H MET 84 n 80 MET 84 H LEU 85 n 81 LEU 85 H GLU 86 n 82 GLU 86 H LYS 87 n 83 LYS 87 H ILE 88 n 84 ILE 88 H TYR 89 n 85 TYR 89 H ILE 90 n 86 ILE 90 H HIS 91 n 87 HIS 91 H PRO 92 n 88 PRO 92 H ARG 93 n 89 ARG 93 H TYR 94 n 90 TYR 94 H ASN 95 n 91 ASN 95 H TRP 96 n 92 TRP 96 H ARG 97 n 93 ARG 97 H GLU 97 n 94 A GLU 97 H ASN 98 n 95 ASN 98 H LEU 99 n 96 LEU 99 H ASP 100 n 97 ASP 100 H ARG 101 n 98 ARG 101 H ASP 102 n 99 ASP 102 H ILE 103 n 100 ILE 103 H ALA 104 n 101 ALA 104 H LEU 105 n 102 LEU 105 H MET 106 n 103 MET 106 H LYS 107 n 104 LYS 107 H LEU 108 n 105 LEU 108 H LYS 109 n 106 LYS 109 H LYS 110 n 107 LYS 110 H PRO 111 n 108 PRO 111 H VAL 112 n 109 VAL 112 H ALA 113 n 110 ALA 113 H PHE 114 n 111 PHE 114 H SER 115 n 112 SER 115 H ASP 116 n 113 ASP 116 H TYR 117 n 114 TYR 117 H ILE 118 n 115 ILE 118 H HIS 119 n 116 HIS 119 H PRO 120 n 117 PRO 120 H VAL 121 n 118 VAL 121 H CYS 122 n 119 CYS 122 H LEU 123 n 120 LEU 123 H PRO 124 n 121 PRO 124 H ASP 125 n 122 ASP 125 H ARG 126 n 123 ARG 126 H GLU 127 n 124 GLU 127 H THR 128 n 125 THR 128 H ALA 129 n 126 ALA 129 H ALA 129 n 127 A ALA 129 H SER 129 n 128 B SER 129 H LEU 129 n 129 C LEU 129 H LEU 130 n 130 LEU 130 H GLN 131 n 131 GLN 131 H ALA 132 n 132 ALA 132 H GLY 133 n 133 GLY 133 H TYR 134 n 134 TYR 134 H LYS 135 n 135 LYS 135 H GLY 136 n 136 GLY 136 H ARG 137 n 137 ARG 137 H VAL 138 n 138 VAL 138 H THR 139 n 139 THR 139 H GLY 140 n 140 GLY 140 H TRP 141 n 141 TRP 141 H GLY 142 n 142 GLY 142 H ASN 143 n 143 ASN 143 H LEU 144 n 144 LEU 144 H LYS 145 n 145 LYS 145 H GLU 146 n 146 GLU 146 H THR 147 n 147 THR 147 H n 148 A 147 H n 149 B 147 H n 150 C 147 H n 151 D 147 H n 152 E 147 H n 153 F 147 H n 154 G 147 H GLY 150 n 155 GLY 150 H GLN 151 n 156 GLN 151 H PRO 152 n 157 PRO 152 H SER 153 n 158 SER 153 H VAL 154 n 159 VAL 154 H LEU 155 n 160 LEU 155 H GLN 156 n 161 GLN 156 H VAL 157 n 162 VAL 157 H VAL 158 n 163 VAL 158 H ASN 159 n 164 ASN 159 H LEU 160 n 165 LEU 160 H PRO 161 n 166 PRO 161 H ILE 162 n 167 ILE 162 H VAL 163 n 168 VAL 163 H GLU 164 n 169 GLU 164 H ARG 165 n 170 ARG 165 H PRO 166 n 171 PRO 166 H VAL 167 n 172 VAL 167 H CYS 168 n 173 CYS 168 H LYS 169 n 174 LYS 169 H ASP 170 n 175 ASP 170 H SER 171 n 176 SER 171 H THR 172 n 177 THR 172 H ARG 173 n 178 ARG 173 H ILE 174 n 179 ILE 174 H ARG 175 n 180 ARG 175 H ILE 176 n 181 ILE 176 H THR 177 n 182 THR 177 H ASP 178 n 183 ASP 178 H ASN 179 n 184 ASN 179 H MET 180 n 185 MET 180 H PHE 181 n 186 PHE 181 H CYS 182 n 187 CYS 182 H ALA 183 n 188 ALA 183 H GLY 184 n 189 GLY 184 H TYR 184 n 190 A TYR 184 H LYS 185 n 191 LYS 185 H PRO 186 n 192 PRO 186 H ASP 186 n 193 A ASP 186 H GLU 186 n 194 B GLU 186 H GLY 186 n 195 C GLY 186 H LYS 186 n 196 D LYS 186 H ARG 187 n 197 ARG 187 H GLY 188 n 198 GLY 188 H ASP 189 n 199 ASP 189 H ALA 190 n 200 ALA 190 H CYS 191 n 201 CYS 191 H GLU 192 n 202 GLU 192 H GLY 193 n 203 GLY 193 H ASP 194 n 204 ASP 194 H SER 195 n 205 SER 195 H GLY 196 n 206 GLY 196 H GLY 197 n 207 GLY 197 H PRO 198 n 208 PRO 198 H PHE 199 n 209 PHE 199 H VAL 200 n 210 VAL 200 H MET 201 n 211 MET 201 H LYS 202 n 212 LYS 202 H SER 203 n 213 SER 203 H PRO 204 n 214 PRO 204 H PHE 204 n 215 A PHE 204 H ASN 204 n 216 B ASN 204 H ASN 205 n 217 ASN 205 H ARG 206 n 218 ARG 206 H TRP 207 n 219 TRP 207 H TYR 208 n 220 TYR 208 H GLN 209 n 221 GLN 209 H MET 210 n 222 MET 210 H GLY 211 n 223 GLY 211 H ILE 212 n 224 ILE 212 H VAL 213 n 225 VAL 213 H SER 214 n 226 SER 214 H TRP 215 n 227 TRP 215 H GLY 216 n 228 GLY 216 H GLU 217 n 229 GLU 217 H GLY 219 n 230 GLY 219 H CYS 220 n 231 CYS 220 H ASP 221 n 232 ASP 221 H ARG 221 n 233 A ARG 221 H ASP 222 n 234 ASP 222 H GLY 223 n 235 GLY 223 H LYS 224 n 236 LYS 224 H TYR 225 n 237 TYR 225 H GLY 226 n 238 GLY 226 H PHE 227 n 239 PHE 227 H TYR 228 n 240 TYR 228 H THR 229 n 241 THR 229 H HIS 230 n 242 HIS 230 H VAL 231 n 243 VAL 231 H PHE 232 n 244 PHE 232 H ARG 233 n 245 ARG 233 H LEU 234 n 246 LEU 234 H LYS 235 n 247 LYS 235 H LYS 236 n 248 LYS 236 H TRP 237 n 249 TRP 237 H ILE 238 n 250 ILE 238 H GLN 239 n 251 GLN 239 H LYS 240 n 252 LYS 240 H VAL 241 n 253 VAL 241 H ILE 242 n 254 ILE 242 H ASP 243 n 255 ASP 243 H GLN 244 n 256 GLN 244 H PHE 245 n 257 PHE 245 H n 258 246 H n 259 247 H SIN 55 n 1 SIN 55 D TYR 56 n 2 TYR 56 D GLU 57 n 3 GLU 57 D PRO 58 n 4 PRO 58 D ILE 59 n 5 ILE 59 D HYP 60 n 6 HYP 60 D GLU 61 n 7 GLU 61 D GLU 62 n 8 GLU 62 D SMF 63 n 9 SMF 63 D ALC 64 n 10 ALC 64 D GLN 65 n 11 GLN 65 D author_and_software_defined_assembly PISA 3 trimeric 4520 -8 12880 D HYP 60 4-HYDROXYPROLINE C HYP 6 PRO D SMF 63 4-SULFOMETHYL-L-PHENYLALANINE C SMF 9 PHE D ALC 64 2-AMINO-3-CYCLOHEXYL-PROPIONIC ACID C ALC 10 ALA 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 H N SER 20 B N SER 5 H O VAL 157 B O VAL 162 H O LEU 160 B O LEU 165 H N GLY 136 B N GLY 136 H N ARG 137 B N ARG 137 H O VAL 200 B O VAL 210 H N MET 201 B N MET 211 H O TYR 208 B O TYR 220 H N TRP 215 B N TRP 227 H O PHE 227 B O PHE 239 H O TYR 228 B O TYR 240 H N PHE 181 B N PHE 186 H N LEU 33 B N LEU 18 H O CYS 42 B O CYS 28 H N SER 45 B N SER 31 H O LEU 53 B O LEU 39 H N VAL 52 B N VAL 38 H O MET 106 B O MET 103 H O LYS 107 B O LYS 104 H N LYS 87 B N LYS 83 H O LYS 81 B O LYS 77 H N ILE 68 B N ILE 63 H O LEU 65 B O LEU 60 H N PHE 34 B N PHE 19 1 L CG ASP 15 A CG ASP 34 1 Y 1 L OD1 ASP 15 A OD1 ASP 34 1 Y 1 L OD2 ASP 15 A OD2 ASP 34 1 Y 1 L THR -5 A THR 1 1 Y 1 L PHE -4 A PHE 2 1 Y 1 L GLY -3 A GLY 3 1 Y 1 L SER -2 A SER 4 1 Y 1 L GLY -1 A GLY 5 1 Y 1 L GLU 0 A GLU 6 1 Y 1 L GLY 16 A GLY 35 1 Y 1 L ARG 17 A ARG 36 1 Y A 1 H TRP 147 B TRP 148 1 Y B 1 H THR 147 B THR 149 1 Y C 1 H ALA 147 B ALA 150 1 Y D 1 H ASN 147 B ASN 151 1 Y E 1 H VAL 147 B VAL 152 1 Y F 1 H GLY 147 B GLY 153 1 Y G 1 H LYS 147 B LYS 154 1 Y 1 H GLY 246 B GLY 258 1 Y 1 H GLU 247 B GLU 259 1 Y 1 L PHE 7 -135.12 -87.85 1 H PRO 28 -57.55 -3.71 1 H ALA 44 -173.30 -177.28 1 H SER 48 -172.78 -176.37 A 1 H TYR 60 -162.28 81.41 G 1 H ASN 60 -158.92 88.32 1 H HIS 71 -135.12 -55.74 1 H GLU 77 -68.30 76.19 1 H ASN 78 71.63 -3.63 A 1 H GLU 97 -109.93 -65.15 1 H SER 195 -39.48 139.03 1 H SER 214 -106.54 -64.31 1 D HYP 60 -39.30 143.79 1 D GLU 62 -62.06 4.88 0.242 0.197 0.1971 2.18 50. 1190 18807 16339 6.3 90.0 RANDOM 1 THROUGHOUT 2 MOLECULAR REPLACEMENT Engh & Huber 2.18 50. 144 2535 33 0 2358 0.0059 1.2836 36.65 2.18 50. 1NZQ 18807 17026 1 0.1276 0.0777 1 18.427 2.45 90.0 0.28 2.18 2.32 2.5 0.69 1 1.52 47.9 data scaling X-GEN data reduction X-GEN refinement CNS phasing CNS thrombin light and heavy chains (E.C.3.4.21.5)/hirugen complex D-Phe-Pro-Arg-Type Thrombin Inhibitor 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N L THR 14 A THR 24 HELX_P L SER 14 A SER 31 1 1 8 B I H ALA 55 B ALA 41 HELX_P H CYS 58 B CYS 44 5 2 4 H PRO 60 B PRO 48 HELX_P H ASP 60 B ASP 51 5 3 4 B E H THR 60 B THR 55 HELX_P H ASN 62 B ASN 57 5 4 3 I H ASP 125 B ASP 122 HELX_P H LEU 130 B LEU 130 1 5 9 H GLU 164 B GLU 169 HELX_P H ASP 170 B ASP 175 1 6 7 H LYS 185 B LYS 191 HELX_P H GLY 186 B GLY 195 5 7 5 C H VAL 231 B VAL 243 HELX_P H ARG 233 B ARG 245 5 8 3 H LEU 234 B LEU 246 HELX_P H PHE 245 B PHE 257 1 9 12 D HYP 60 C HYP 6 HELX_P D ALC 64 C ALC 10 5 10 5 disulf 2.034 L CYS 1 A SG CYS 9 1_555 H CYS 122 B SG CYS 119 1_555 disulf 2.028 H CYS 42 B SG CYS 28 1_555 H CYS 58 B SG CYS 44 1_555 disulf 2.019 H CYS 168 B SG CYS 173 1_555 H CYS 182 B SG CYS 187 1_555 disulf 2.025 H CYS 191 B SG CYS 201 1_555 H CYS 220 B SG CYS 231 1_555 covale 1.328 D SIN 55 C C4 SIN 1 1_555 D TYR 56 C N TYR 2 1_555 covale 1.341 D ILE 59 C C ILE 5 1_555 D HYP 60 C N HYP 6 1_555 covale 1.328 D HYP 60 C C HYP 6 1_555 D GLU 61 C N GLU 7 1_555 covale 1.344 D GLU 62 C C GLU 8 1_555 D SMF 63 C N SMF 9 1_555 covale 1.339 D SMF 63 C C SMF 9 1_555 D ALC 64 C N ALC 10 1_555 covale 1.330 D ALC 64 C C ALC 10 1_555 D GLN 65 C N GLN 11 1_555 HYDROLASE/HYDROLASE INHIBITOR thrombin, thrombin inhibitor, BLOOD CLOTTING, HYDROLASE-HYDROLASE INHIBITOR COMPLEX H SER 36 B SER 22 A 1 H PRO 37 B PRO 23 -0.03 THRB_HUMAN UNP 1 328 P00734 TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR THRB_HUMAN UNP 2 364 P00734 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE 1NZQ PDB 3 1NZQ XYEPIPEEFAQ 328 363 1NZQ 1 15 P00734 B L 1 7 34 364 622 1NZQ 16 245 P00734 H 2 1 257 55 65 1NZQ 55 65 1NZQ D 3 1 11 7 7 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel H SER 20 B SER 5 H ASP 21 B ASP 6 H GLN 156 B GLN 161 H PRO 161 B PRO 166 H LYS 135 B LYS 135 H GLY 140 B GLY 140 H PRO 198 B PRO 208 H LYS 202 B LYS 212 H TRP 207 B TRP 219 H TRP 215 B TRP 227 H GLY 226 B GLY 238 H THR 229 B THR 241 H MET 180 B MET 185 H ALA 183 B ALA 188 H GLN 30 B GLN 15 H ARG 35 B ARG 20 H GLU 39 B GLU 25 H LEU 46 B LEU 32 H TRP 51 B TRP 37 H THR 54 B THR 40 H ALA 104 B ALA 101 H LEU 108 B LEU 105 H LYS 81 B LYS 77 H ILE 90 B ILE 86 H LEU 64 B LEU 59 H ILE 68 B ILE 63 H GLN 30 B GLN 15 H ARG 35 B ARG 20 BINDING SITE FOR RESIDUE 162 H 248 Software 14 BINDING SITE FOR CHAIN D OF DECAPEPTIDE HIRUDIN ANALOGUE Software 18 H HIS 57 B HIS 43 14 1_555 H TYR 60 B TYR 47 A 14 1_555 H TRP 60 B TRP 50 D 14 1_555 H GLU 97 B GLU 94 A 14 1_555 H ASP 189 B ASP 199 14 1_555 H ALA 190 B ALA 200 14 1_555 H GLU 192 B GLU 202 14 1_555 H SER 195 B SER 205 14 1_555 H SER 214 B SER 226 14 1_555 H TRP 215 B TRP 227 14 1_555 H GLY 216 B GLY 228 14 1_555 H GLU 217 B GLU 229 14 1_555 H GLY 219 B GLY 230 14 1_555 H HOH 281 F HOH 14 1_555 D HOH 39 G HOH 18 1_555 D HOH 43 G HOH 18 1_555 D HOH 139 G HOH 18 1_555 H PHE 34 B PHE 19 18 1_555 H LYS 36 B LYS 21 18 1_555 H GLN 38 B GLN 24 18 1_555 H LEU 40 B LEU 26 18 1_555 H LEU 65 B LEU 60 18 1_555 H ARG 67 B ARG 62 18 1_555 H ARG 73 B ARG 68 18 1_555 H THR 74 B THR 69 18 1_555 H ARG 75 B ARG 70 18 1_555 H ARG 75 B ARG 70 18 2_555 H TYR 76 B TYR 71 18 1_555 H LYS 81 B LYS 77 18 1_555 H ILE 82 B ILE 78 18 1_555 H HOH 267 F HOH 18 1_555 H HOH 351 F HOH 18 1_555 5 monoclinic C 1 2 1