0.018866 0.000000 0.010805 0.000000 0.021244 0.000000 0.000000 0.000000 0.036165 0.000000 0.000000 0.000000 Clark, G.R. Pytel, P.D. Squire, C.J. Neidle, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 119.80 90.00 53.004 47.073 31.865 C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C27 H29 N O10 527.520 DAUNOMYCIN DAUNORUBICIN non-polymer C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer Na 1 22.990 SODIUM ION non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C N 17 N C N 18 N O N 19 N N N 20 N C N 21 N N N 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H Y 38 N C Y 39 N C Y 40 N C Y 41 N C N 42 N O Y 43 N C N 44 N C N 45 N O Y 46 N C Y 47 N C N 48 N O Y 49 N C N 50 S C N 51 N O N 52 N C N 53 S C N 54 N O N 55 N C N 56 N O N 57 N C N 58 N C Y 59 N C Y 60 N C N 61 N O Y 62 N C N 63 N C N 64 N O Y 65 N C N 66 N C N 67 R C N 68 N C N 69 S C N 70 N N N 71 S C N 72 N O N 73 S C N 74 N O N 75 N C N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N O N 106 N P N 107 N O N 108 N O N 109 N O N 110 N C N 111 R C N 112 N O N 113 S C N 114 N O N 115 N C N 116 R C N 117 N N N 118 N C N 119 N O N 120 N N N 121 N C N 122 N O N 123 N C N 124 N C N 125 N C N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N O N 142 N H N 143 N H N 144 N NA N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing N 29 N sing Y 30 N doub N 31 N doub N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N doub N 37 N sing N 38 N sing N 39 N sing Y 40 N doub Y 41 N sing N 42 N sing Y 43 N sing N 44 N sing Y 45 N doub N 46 N sing N 47 N sing Y 48 N sing N 49 N sing N 50 N sing Y 51 N doub N 52 N doub N 53 N sing Y 54 N doub Y 55 N sing N 56 N sing Y 57 N sing N 58 N sing N 59 N sing Y 60 N doub N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing Y 80 N sing N 81 N sing Y 82 N doub N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N doub N 137 N sing N 138 N sing N 139 N sing N 140 N doub N 141 N sing N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing US J.Am.Chem.Soc. JACSAT 0004 0002-7863 125 4066 4067 10.1021/ja0297988 12670225 Structure of the First Parallel DNA Quadruplex-drug Complex 2003 10.2210/pdb1o0k/pdb pdb_00001o0k 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 130 1 CCD 2001-11-19 ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 1.08 1.0 SSRL 1.08 SYNCHROTRON SSRL 1880.251 5'-D(*TP*GP*GP*GP*GP*T)-3' 4 syn polymer 22.990 SODIUM ION 3 syn non-polymer 527.520 DAUNOMYCIN 3 syn non-polymer 18.015 water 167 nat water no no (DT)(DG)(DG)(DG)(DG)(DT) TGGGGT A,B,C,D polydeoxyribonucleotide n n n n n n 1 2.22 44.54 VAPOR DIFFUSION, SITTING DROP 7.0 NaCl, Cacodylate buffer, Calcium Chloride, Spermine, MPD, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 278K 278 NaCl 1 Cacodylate buffer 1 Calcium Chloride 1 Spermine 1 MPD 1 NaCl 2 Calcium Chloride 2 MPD 2 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_site pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2003-04-15 1 1 2008-04-29 1 2 2011-07-13 1 3 2024-02-14 1 4 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2003-02-22 REL REL NA SODIUM ION DM1 DAUNOMYCIN HOH water TGGGGT synthesized by OSWEL sample 352D The first G4 quadruplex from UDF062 PDB experimental model NA 28 2 NA NA 28 A NA 30 2 NA NA 30 A DM1 25 3 DM1 DM1 25 B DM1 27 3 DM1 DM1 27 C NA 29 2 NA NA 29 C DM1 26 3 DM1 DM1 26 D HOH 1112 4 HOH HOH 1112 A HOH 1113 4 HOH HOH 1113 A HOH 1114 4 HOH HOH 1114 A HOH 1116 4 HOH HOH 1116 A HOH 1118 4 HOH HOH 1118 A HOH 1119 4 HOH HOH 1119 A HOH 1130 4 HOH HOH 1130 A HOH 1135 4 HOH HOH 1135 A HOH 1136 4 HOH HOH 1136 A HOH 1139 4 HOH HOH 1139 A HOH 1141 4 HOH HOH 1141 A HOH 1146 4 HOH HOH 1146 A HOH 1151 4 HOH HOH 1151 A HOH 1154 4 HOH HOH 1154 A HOH 1157 4 HOH HOH 1157 A HOH 1161 4 HOH HOH 1161 A HOH 1162 4 HOH HOH 1162 A HOH 1169 4 HOH HOH 1169 A HOH 1172 4 HOH HOH 1172 A HOH 1174 4 HOH HOH 1174 A HOH 1178 4 HOH HOH 1178 A HOH 1186 4 HOH HOH 1186 A HOH 1190 4 HOH HOH 1190 A HOH 1197 4 HOH HOH 1197 A HOH 1201 4 HOH HOH 1201 A HOH 1203 4 HOH HOH 1203 A HOH 1210 4 HOH HOH 1210 A HOH 1211 4 HOH HOH 1211 A HOH 1212 4 HOH HOH 1212 A HOH 1214 4 HOH HOH 1214 A HOH 1221 4 HOH HOH 1221 A HOH 1234 4 HOH HOH 1234 A HOH 1236 4 HOH HOH 1236 A HOH 1243 4 HOH HOH 1243 A HOH 1245 4 HOH HOH 1245 A HOH 1253 4 HOH HOH 1253 A HOH 1254 4 HOH HOH 1254 A HOH 1255 4 HOH HOH 1255 A HOH 1257 4 HOH HOH 1257 A HOH 1259 4 HOH HOH 1259 A HOH 1103 4 HOH HOH 1103 B HOH 1107 4 HOH HOH 1107 B HOH 1111 4 HOH HOH 1111 B HOH 1122 4 HOH HOH 1122 B HOH 1124 4 HOH HOH 1124 B HOH 1131 4 HOH HOH 1131 B HOH 1137 4 HOH HOH 1137 B HOH 1145 4 HOH HOH 1145 B HOH 1147 4 HOH HOH 1147 B HOH 1170 4 HOH HOH 1170 B HOH 1177 4 HOH HOH 1177 B HOH 1180 4 HOH HOH 1180 B HOH 1182 4 HOH HOH 1182 B HOH 1184 4 HOH HOH 1184 B HOH 1185 4 HOH HOH 1185 B HOH 1187 4 HOH HOH 1187 B HOH 1189 4 HOH HOH 1189 B HOH 1195 4 HOH HOH 1195 B HOH 1199 4 HOH HOH 1199 B HOH 1204 4 HOH HOH 1204 B HOH 1207 4 HOH HOH 1207 B HOH 1209 4 HOH HOH 1209 B HOH 1217 4 HOH HOH 1217 B HOH 1219 4 HOH HOH 1219 B HOH 1223 4 HOH HOH 1223 B HOH 1224 4 HOH HOH 1224 B HOH 1225 4 HOH HOH 1225 B HOH 1229 4 HOH HOH 1229 B HOH 1231 4 HOH HOH 1231 B HOH 1233 4 HOH HOH 1233 B HOH 1235 4 HOH HOH 1235 B HOH 1248 4 HOH HOH 1248 B HOH 1250 4 HOH HOH 1250 B HOH 1251 4 HOH HOH 1251 B HOH 1258 4 HOH HOH 1258 B HOH 1262 4 HOH HOH 1262 B HOH 1264 4 HOH HOH 1264 B HOH 1265 4 HOH HOH 1265 B HOH 1267 4 HOH HOH 1267 B HOH 1106 4 HOH HOH 1106 C HOH 1110 4 HOH HOH 1110 C HOH 1115 4 HOH HOH 1115 C HOH 1121 4 HOH HOH 1121 C HOH 1125 4 HOH HOH 1125 C HOH 1126 4 HOH HOH 1126 C HOH 1127 4 HOH HOH 1127 C HOH 1128 4 HOH HOH 1128 C HOH 1129 4 HOH HOH 1129 C HOH 1132 4 HOH HOH 1132 C HOH 1133 4 HOH HOH 1133 C HOH 1134 4 HOH HOH 1134 C HOH 1138 4 HOH HOH 1138 C HOH 1142 4 HOH HOH 1142 C HOH 1143 4 HOH HOH 1143 C HOH 1144 4 HOH HOH 1144 C HOH 1149 4 HOH HOH 1149 C HOH 1150 4 HOH HOH 1150 C HOH 1152 4 HOH HOH 1152 C HOH 1155 4 HOH HOH 1155 C HOH 1156 4 HOH HOH 1156 C HOH 1159 4 HOH HOH 1159 C HOH 1160 4 HOH HOH 1160 C HOH 1164 4 HOH HOH 1164 C HOH 1166 4 HOH HOH 1166 C HOH 1167 4 HOH HOH 1167 C HOH 1173 4 HOH HOH 1173 C HOH 1175 4 HOH HOH 1175 C HOH 1179 4 HOH HOH 1179 C HOH 1183 4 HOH HOH 1183 C HOH 1191 4 HOH HOH 1191 C HOH 1194 4 HOH HOH 1194 C HOH 1196 4 HOH HOH 1196 C HOH 1198 4 HOH HOH 1198 C HOH 1200 4 HOH HOH 1200 C HOH 1202 4 HOH HOH 1202 C HOH 1205 4 HOH HOH 1205 C HOH 1213 4 HOH HOH 1213 C HOH 1215 4 HOH HOH 1215 C HOH 1218 4 HOH HOH 1218 C HOH 1222 4 HOH HOH 1222 C HOH 1227 4 HOH HOH 1227 C HOH 1228 4 HOH HOH 1228 C HOH 1237 4 HOH HOH 1237 C HOH 1239 4 HOH HOH 1239 C HOH 1240 4 HOH HOH 1240 C HOH 1246 4 HOH HOH 1246 C HOH 1263 4 HOH HOH 1263 C HOH 1266 4 HOH HOH 1266 C HOH 1101 4 HOH HOH 1101 D HOH 1102 4 HOH HOH 1102 D HOH 1104 4 HOH HOH 1104 D HOH 1105 4 HOH HOH 1105 D HOH 1108 4 HOH HOH 1108 D HOH 1109 4 HOH HOH 1109 D HOH 1117 4 HOH HOH 1117 D HOH 1120 4 HOH HOH 1120 D HOH 1123 4 HOH HOH 1123 D HOH 1140 4 HOH HOH 1140 D HOH 1148 4 HOH HOH 1148 D HOH 1153 4 HOH HOH 1153 D HOH 1158 4 HOH HOH 1158 D HOH 1163 4 HOH HOH 1163 D HOH 1165 4 HOH HOH 1165 D HOH 1168 4 HOH HOH 1168 D HOH 1171 4 HOH HOH 1171 D HOH 1176 4 HOH HOH 1176 D HOH 1181 4 HOH HOH 1181 D HOH 1188 4 HOH HOH 1188 D HOH 1192 4 HOH HOH 1192 D HOH 1193 4 HOH HOH 1193 D HOH 1206 4 HOH HOH 1206 D HOH 1208 4 HOH HOH 1208 D HOH 1216 4 HOH HOH 1216 D HOH 1220 4 HOH HOH 1220 D HOH 1226 4 HOH HOH 1226 D HOH 1230 4 HOH HOH 1230 D HOH 1232 4 HOH HOH 1232 D HOH 1238 4 HOH HOH 1238 D HOH 1241 4 HOH HOH 1241 D HOH 1242 4 HOH HOH 1242 D HOH 1244 4 HOH HOH 1244 D HOH 1247 4 HOH HOH 1247 D HOH 1249 4 HOH HOH 1249 D HOH 1252 4 HOH HOH 1252 D HOH 1256 4 HOH HOH 1256 D HOH 1260 4 HOH HOH 1260 D HOH 1261 4 HOH HOH 1261 D T 1001 n 1 DT 1001 A G 1002 n 2 DG 1002 A G 1003 n 3 DG 1003 A G 1004 n 4 DG 1004 A G 1005 n 5 DG 1005 A T 1006 n 6 DT 1006 A T 1007 n 1 DT 1007 B G 1008 n 2 DG 1008 B G 1009 n 3 DG 1009 B G 1010 n 4 DG 1010 B G 1011 n 5 DG 1011 B T 1012 n 6 DT 1012 B T 1013 n 1 DT 1013 C G 1014 n 2 DG 1014 C G 1015 n 3 DG 1015 C G 1016 n 4 DG 1016 C G 1017 n 5 DG 1017 C T 1018 n 6 DT 1018 C T 1019 n 1 DT 1019 D G 1020 n 2 DG 1020 D G 1021 n 3 DG 1021 D G 1022 n 4 DG 1022 D G 1023 n 5 DG 1023 D T 1024 n 6 DT 1024 D 0.163 0.157 0.197 0.206 977 18761 20944 author_defined_assembly 8 octameric A DG 1005 A O6 DG 5 1_555 A NA 28 E NA NA 1_555 B DG 1010 B O6 DG 4 1_555 127.9 A DG 1005 A O6 DG 5 1_555 A NA 28 E NA NA 1_555 B DG 1011 B O6 DG 5 1_555 81.1 B DG 1010 B O6 DG 4 1_555 A NA 28 E NA NA 1_555 B DG 1011 B O6 DG 5 1_555 75.0 A DG 1005 A O6 DG 5 1_555 A NA 28 E NA NA 1_555 C DG 1017 C O6 DG 5 1_555 131.8 B DG 1010 B O6 DG 4 1_555 A NA 28 E NA NA 1_555 C DG 1017 C O6 DG 5 1_555 88.9 B DG 1011 B O6 DG 5 1_555 A NA 28 E NA NA 1_555 C DG 1017 C O6 DG 5 1_555 80.4 A DG 1005 A O6 DG 5 1_555 A NA 28 E NA NA 1_555 D DG 1023 D O6 DG 5 1_555 81.8 B DG 1010 B O6 DG 4 1_555 A NA 28 E NA NA 1_555 D DG 1023 D O6 DG 5 1_555 144.9 B DG 1011 B O6 DG 5 1_555 A NA 28 E NA NA 1_555 D DG 1023 D O6 DG 5 1_555 134.6 C DG 1017 C O6 DG 5 1_555 A NA 28 E NA NA 1_555 D DG 1023 D O6 DG 5 1_555 80.4 A DG 1002 A O6 DG 2 1_555 A NA 30 F NA NA 1_555 B DG 1008 B O6 DG 2 1_555 82.9 A DG 1002 A O6 DG 2 1_555 A NA 30 F NA NA 1_555 C DG 1014 C O6 DG 2 1_555 128.8 B DG 1008 B O6 DG 2 1_555 A NA 30 F NA NA 1_555 C DG 1014 C O6 DG 2 1_555 80.6 A DG 1002 A O6 DG 2 1_555 A NA 30 F NA NA 1_555 C DG 1015 C O6 DG 3 1_555 141.6 B DG 1008 B O6 DG 2 1_555 A NA 30 F NA NA 1_555 C DG 1015 C O6 DG 3 1_555 79.7 C DG 1014 C O6 DG 2 1_555 A NA 30 F NA NA 1_555 C DG 1015 C O6 DG 3 1_555 81.6 A DG 1002 A O6 DG 2 1_555 A NA 30 F NA NA 1_555 D DG 1020 D O6 DG 2 1_555 79.3 B DG 1008 B O6 DG 2 1_555 A NA 30 F NA NA 1_555 D DG 1020 D O6 DG 2 1_555 139.3 C DG 1014 C O6 DG 2 1_555 A NA 30 F NA NA 1_555 D DG 1020 D O6 DG 2 1_555 82.6 C DG 1015 C O6 DG 3 1_555 A NA 30 F NA NA 1_555 D DG 1020 D O6 DG 2 1_555 133.8 A DG 1002 A O6 DG 2 1_555 A NA 30 F NA NA 1_555 D DG 1021 D O6 DG 3 1_555 130.2 B DG 1008 B O6 DG 2 1_555 A NA 30 F NA NA 1_555 D DG 1021 D O6 DG 3 1_555 143.9 C DG 1014 C O6 DG 2 1_555 A NA 30 F NA NA 1_555 D DG 1021 D O6 DG 3 1_555 86.0 C DG 1015 C O6 DG 3 1_555 A NA 30 F NA NA 1_555 D DG 1021 D O6 DG 3 1_555 65.2 D DG 1020 D O6 DG 2 1_555 A NA 30 F NA NA 1_555 D DG 1021 D O6 DG 3 1_555 70.5 A DG 1003 A O6 DG 3 1_555 C NA 29 I NA NA 1_555 A DG 1004 A O6 DG 4 1_555 74.2 A DG 1003 A O6 DG 3 1_555 C NA 29 I NA NA 1_555 B DG 1009 B O6 DG 3 1_555 70.2 A DG 1004 A O6 DG 4 1_555 C NA 29 I NA NA 1_555 B DG 1009 B O6 DG 3 1_555 128.9 A DG 1003 A O6 DG 3 1_555 C NA 29 I NA NA 1_555 B DG 1010 B O6 DG 4 1_555 92.8 A DG 1004 A O6 DG 4 1_555 C NA 29 I NA NA 1_555 B DG 1010 B O6 DG 4 1_555 72.2 B DG 1009 B O6 DG 3 1_555 C NA 29 I NA NA 1_555 B DG 1010 B O6 DG 4 1_555 74.1 A DG 1003 A O6 DG 3 1_555 C NA 29 I NA NA 1_555 C DG 1015 C O6 DG 3 1_555 107.5 A DG 1004 A O6 DG 4 1_555 C NA 29 I NA NA 1_555 C DG 1015 C O6 DG 3 1_555 157.0 B DG 1009 B O6 DG 3 1_555 C NA 29 I NA NA 1_555 C DG 1015 C O6 DG 3 1_555 70.8 B DG 1010 B O6 DG 4 1_555 C NA 29 I NA NA 1_555 C DG 1015 C O6 DG 3 1_555 129.7 A DG 1003 A O6 DG 3 1_555 C NA 29 I NA NA 1_555 C DG 1016 C O6 DG 4 1_555 157.8 A DG 1004 A O6 DG 4 1_555 C NA 29 I NA NA 1_555 C DG 1016 C O6 DG 4 1_555 112.1 B DG 1009 B O6 DG 3 1_555 C NA 29 I NA NA 1_555 C DG 1016 C O6 DG 4 1_555 90.8 B DG 1010 B O6 DG 4 1_555 C NA 29 I NA NA 1_555 C DG 1016 C O6 DG 4 1_555 70.4 C DG 1015 C O6 DG 3 1_555 C NA 29 I NA NA 1_555 C DG 1016 C O6 DG 4 1_555 75.2 A DG 1003 A O6 DG 3 1_555 C NA 29 I NA NA 1_555 D DG 1021 D O6 DG 3 1_555 69.5 A DG 1004 A O6 DG 4 1_555 C NA 29 I NA NA 1_555 D DG 1021 D O6 DG 3 1_555 91.8 B DG 1009 B O6 DG 3 1_555 C NA 29 I NA NA 1_555 D DG 1021 D O6 DG 3 1_555 108.2 B DG 1010 B O6 DG 4 1_555 C NA 29 I NA NA 1_555 D DG 1021 D O6 DG 3 1_555 159.1 C DG 1015 C O6 DG 3 1_555 C NA 29 I NA NA 1_555 D DG 1021 D O6 DG 3 1_555 68.4 C DG 1016 C O6 DG 4 1_555 C NA 29 I NA NA 1_555 D DG 1021 D O6 DG 3 1_555 129.5 A DG 1003 A O6 DG 3 1_555 C NA 29 I NA NA 1_555 D DG 1022 D O6 DG 4 1_555 128.8 A DG 1004 A O6 DG 4 1_555 C NA 29 I NA NA 1_555 D DG 1022 D O6 DG 4 1_555 72.2 B DG 1009 B O6 DG 3 1_555 C NA 29 I NA NA 1_555 D DG 1022 D O6 DG 4 1_555 157.9 B DG 1010 B O6 DG 4 1_555 C NA 29 I NA NA 1_555 D DG 1022 D O6 DG 4 1_555 111.9 C DG 1015 C O6 DG 3 1_555 C NA 29 I NA NA 1_555 D DG 1022 D O6 DG 4 1_555 90.5 C DG 1016 C O6 DG 4 1_555 C NA 29 I NA NA 1_555 D DG 1022 D O6 DG 4 1_555 72.5 D DG 1021 D O6 DG 3 1_555 C NA 29 I NA NA 1_555 D DG 1022 D O6 DG 4 1_555 74.1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 2_656 -x+1,y,-z+1 crystal symmetry operation 37.1679247319 0.0000000000 27.6513461716 1 C HOH 1246 M HOH 1 A C5' DT 1006 A C5' DT 6 1 Y 1 A C4' DT 1006 A C4' DT 6 1 Y 1 A O4' DT 1006 A O4' DT 6 1 Y 1 A C3' DT 1006 A C3' DT 6 1 Y 1 A O3' DT 1006 A O3' DT 6 1 Y 1 A C2' DT 1006 A C2' DT 6 1 Y 1 A C1' DT 1006 A C1' DT 6 1 Y 1 A N1 DT 1006 A N1 DT 6 1 Y 1 A C2 DT 1006 A C2 DT 6 1 Y 1 A O2 DT 1006 A O2 DT 6 1 Y 1 A N3 DT 1006 A N3 DT 6 1 Y 1 A C4 DT 1006 A C4 DT 6 1 Y 1 A O4 DT 1006 A O4 DT 6 1 Y 1 A C5 DT 1006 A C5 DT 6 1 Y 1 A C7 DT 1006 A C7 DT 6 1 Y 1 A C6 DT 1006 A C6 DT 6 1 Y 1 B O5' DT 1007 B O5' DT 1 1 Y 1 B C5' DT 1007 B C5' DT 1 1 Y 1 B C4' DT 1007 B C4' DT 1 1 Y 1 B O4' DT 1007 B O4' DT 1 1 Y 1 B C3' DT 1007 B C3' DT 1 1 Y 1 B C2' DT 1007 B C2' DT 1 1 Y 1 B C1' DT 1007 B C1' DT 1 1 Y 1 B N1 DT 1007 B N1 DT 1 1 Y 1 B C2 DT 1007 B C2 DT 1 1 Y 1 B O2 DT 1007 B O2 DT 1 1 Y 1 B N3 DT 1007 B N3 DT 1 1 Y 1 B C4 DT 1007 B C4 DT 1 1 Y 1 B O4 DT 1007 B O4 DT 1 1 Y 1 B C5 DT 1007 B C5 DT 1 1 Y 1 B C7 DT 1007 B C7 DT 1 1 Y 1 B C6 DT 1007 B C6 DT 1 1 Y 1 B C5' DT 1012 B C5' DT 6 1 Y 1 B C4' DT 1012 B C4' DT 6 1 Y 1 B O4' DT 1012 B O4' DT 6 1 Y 1 B C3' DT 1012 B C3' DT 6 1 Y 1 B O3' DT 1012 B O3' DT 6 1 Y 1 B C2' DT 1012 B C2' DT 6 1 Y 1 B C1' DT 1012 B C1' DT 6 1 Y 1 B N1 DT 1012 B N1 DT 6 1 Y 1 B C2 DT 1012 B C2 DT 6 1 Y 1 B O2 DT 1012 B O2 DT 6 1 Y 1 B N3 DT 1012 B N3 DT 6 1 Y 1 B C4 DT 1012 B C4 DT 6 1 Y 1 B O4 DT 1012 B O4 DT 6 1 Y 1 B C5 DT 1012 B C5 DT 6 1 Y 1 B C7 DT 1012 B C7 DT 6 1 Y 1 B C6 DT 1012 B C6 DT 6 1 Y 1 D O5' DT 1019 D O5' DT 1 1 Y 1 D C5' DT 1019 D C5' DT 1 1 Y 1 D C5' DT 1024 D C5' DT 6 1 Y 1 D C4' DT 1024 D C4' DT 6 1 Y 1 D O4' DT 1024 D O4' DT 6 1 Y 1 D C3' DT 1024 D C3' DT 6 1 Y 1 D O3' DT 1024 D O3' DT 6 1 Y 1 D C2' DT 1024 D C2' DT 6 1 Y 1 D C1' DT 1024 D C1' DT 6 1 Y 1 D N1 DT 1024 D N1 DT 6 1 Y 1 D C2 DT 1024 D C2 DT 6 1 Y 1 D O2 DT 1024 D O2 DT 6 1 Y 1 D N3 DT 1024 D N3 DT 6 1 Y 1 D C4 DT 1024 D C4 DT 6 1 Y 1 D O4 DT 1024 D O4 DT 6 1 Y 1 D C5 DT 1024 D C5 DT 6 1 Y 1 D C7 DT 1024 D C7 DT 6 1 Y 1 D C6 DT 1024 D C6 DT 6 1 Y 1 -3.93 0.60 122.30 118.37 A A A N3 C2 O2 DT DT DT 1001 1001 1001 N 1 -5.91 0.80 109.40 103.49 A A A O5' C5' C4' DG DG DG 1002 1002 1002 N 1 10.45 0.30 108.30 118.75 A A A O4' C1' N9 DG DG DG 1002 1002 1002 N 1 3.22 0.50 128.60 131.82 A A A N3 C4 C5 DG DG DG 1002 1002 1002 N 1 -4.57 0.70 108.00 103.43 A A A O4' C1' N9 DG DG DG 1003 1003 1003 N 1 -15.30 1.50 119.60 104.30 A A A OP1 P OP2 DG DG DG 1004 1004 1004 N 1 10.38 1.20 110.70 121.08 A A A O5' P OP1 DG DG DG 1004 1004 1004 N 1 14.63 1.20 115.70 130.33 A A A C5' C4' C3' DG DG DG 1004 1004 1004 N 1 7.58 1.20 119.70 127.28 A A A C3' O3' P DG DG DG 1004 1004 1005 Y 1 -5.28 0.70 108.00 102.72 A A A O4' C1' N9 DG DG DG 1005 1005 1005 N 1 8.14 1.20 119.70 127.84 A A A C3' O3' P DG DG DT 1005 1005 1006 Y 1 4.11 0.50 106.80 110.91 B B B O4' C1' C2' DG DG DG 1008 1008 1008 N 1 3.50 0.50 104.30 107.80 B B B C5 N7 C8 DG DG DG 1010 1010 1010 N 1 -3.06 0.50 113.10 110.04 B B B N7 C8 N9 DG DG DG 1010 1010 1010 N 1 -5.88 0.70 108.00 102.12 B B B O4' C1' N9 DG DG DG 1011 1011 1011 N 1 4.38 0.70 110.30 114.68 C C C C1' O4' C4' DG DG DG 1014 1014 1014 N 1 -12.56 1.90 112.60 100.04 C C C N9 C1' C2' DG DG DG 1014 1014 1014 N 1 11.72 0.30 108.30 120.02 C C C O4' C1' N9 DG DG DG 1014 1014 1014 N 1 -7.29 0.70 108.00 100.71 C C C O4' C1' N9 DG DG DG 1015 1015 1015 N 1 7.77 1.20 119.70 127.47 C C C C3' O3' P DG DG DG 1016 1016 1017 Y 1 -6.17 0.90 105.70 99.53 C C C O5' P OP2 DG DG DG 1017 1017 1017 N 1 -9.13 0.70 108.00 98.87 C C C O4' C1' N9 DG DG DG 1017 1017 1017 N 1 -4.75 0.70 108.00 103.25 C C C O4' C1' N1 DT DT DT 1018 1018 1018 N 1 -2.97 0.40 104.50 101.53 D D D O4' C4' C3' DT DT DT 1019 1019 1019 N 1 5.19 0.80 123.10 128.29 D D D N1 C2 O2 DT DT DT 1019 1019 1019 N 1 -4.60 0.60 119.90 115.30 D D D N3 C4 O4 DT DT DT 1019 1019 1019 N 1 7.61 1.10 110.50 118.11 D D D O3' P OP2 DT DG DG 1019 1020 1020 Y 1 3.46 0.50 106.80 110.26 D D D O4' C1' C2' DG DG DG 1020 1020 1020 N 1 -4.37 0.70 108.00 103.63 D D D O4' C1' N9 DG DG DG 1023 1023 1023 N 1 A A C2' C1' DG DG 1002 1002 0.084 0.010 1.519 1.603 N 1 C C C2' C1' DG DG 1014 1014 0.108 0.010 1.519 1.627 N 1 C C O4' C1' DG DG 1014 1014 -0.097 0.012 1.418 1.321 N 1 C C O4' C1' DG DG 1015 1015 0.072 0.011 1.420 1.492 N 1.17 10.0 20944 18761 Random 1 Anisotropic, isotropic THROUGHOUT 4.0 MOLECULAR REPLACEMENT The first G4 quadruplex from UDF062 SHELX 1.17 10.0 167 718 117 434 0 1.17 99.0 1O0K 20944 4.0 2.0 0.055 1 32.67 6.3 95.3 0.198 1.17 1.21 6.8 2031 3.5 87.7 data reduction DENZO data scaling SCALEPACK phasing AMoRE refinement SHELXL-97 Structure of the First Parallel DNA Quadruplex-drug Complex 1 N N 1 N N 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N 2 N N 3 N N 4 N N 4 N N 4 N N 4 N N metalc 2.492 A NA 28 E NA NA 1_555 A DG 1005 A O6 DG 5 1_555 metalc 2.981 A NA 28 E NA NA 1_555 B DG 1010 B O6 DG 4 1_555 metalc 2.489 A NA 28 E NA NA 1_555 B DG 1011 B O6 DG 5 1_555 metalc 2.507 A NA 28 E NA NA 1_555 C DG 1017 C O6 DG 5 1_555 metalc 2.482 A NA 28 E NA NA 1_555 D DG 1023 D O6 DG 5 1_555 metalc 2.495 A NA 30 F NA NA 1_555 A DG 1002 A O6 DG 2 1_555 metalc 2.428 A NA 30 F NA NA 1_555 B DG 1008 B O6 DG 2 1_555 metalc 2.485 A NA 30 F NA NA 1_555 C DG 1014 C O6 DG 2 1_555 metalc 2.862 A NA 30 F NA NA 1_555 C DG 1015 C O6 DG 3 1_555 metalc 2.433 A NA 30 F NA NA 1_555 D DG 1020 D O6 DG 2 1_555 metalc 2.853 A NA 30 F NA NA 1_555 D DG 1021 D O6 DG 3 1_555 metalc 2.634 A DG 1003 A O6 DG 3 1_555 C NA 29 I NA NA 1_555 metalc 2.654 A DG 1004 A O6 DG 4 1_555 C NA 29 I NA NA 1_555 metalc 2.738 B DG 1009 B O6 DG 3 1_555 C NA 29 I NA NA 1_555 metalc 2.633 B DG 1010 B O6 DG 4 1_555 C NA 29 I NA NA 1_555 metalc 2.616 C NA 29 I NA NA 1_555 C DG 1015 C O6 DG 3 1_555 metalc 2.682 C NA 29 I NA NA 1_555 C DG 1016 C O6 DG 4 1_555 metalc 2.851 C NA 29 I NA NA 1_555 D DG 1021 D O6 DG 3 1_555 metalc 2.621 C NA 29 I NA NA 1_555 D DG 1022 D O6 DG 4 1_555 hydrog TYPE_6_PAIR A DG 1002 A N7 DG 2 1_555 B DG 1008 B N2 DG 2 1_555 hydrog TYPE_6_PAIR A DG 1002 A O6 DG 2 1_555 B DG 1008 B N1 DG 2 1_555 hydrog TYPE_6_PAIR A DG 1002 A N1 DG 2 1_555 D DG 1020 D O6 DG 2 1_555 hydrog TYPE_6_PAIR A DG 1002 A N2 DG 2 1_555 D DG 1020 D N7 DG 2 1_555 hydrog TYPE_6_PAIR A DG 1003 A N7 DG 3 1_555 B DG 1009 B N2 DG 3 1_555 hydrog TYPE_6_PAIR A DG 1003 A O6 DG 3 1_555 B DG 1009 B N1 DG 3 1_555 hydrog TYPE_6_PAIR A DG 1003 A N1 DG 3 1_555 D DG 1021 D O6 DG 3 1_555 hydrog TYPE_6_PAIR A DG 1003 A N2 DG 3 1_555 D DG 1021 D N7 DG 3 1_555 hydrog TYPE_6_PAIR A DG 1004 A N7 DG 4 1_555 B DG 1010 B N2 DG 4 1_555 hydrog TYPE_6_PAIR A DG 1004 A O6 DG 4 1_555 B DG 1010 B N1 DG 4 1_555 hydrog TYPE_6_PAIR A DG 1004 A N1 DG 4 1_555 D DG 1022 D O6 DG 4 1_555 hydrog TYPE_6_PAIR A DG 1004 A N2 DG 4 1_555 D DG 1022 D N7 DG 4 1_555 hydrog TYPE_6_PAIR A DG 1005 A N7 DG 5 1_555 B DG 1011 B N2 DG 5 1_555 hydrog TYPE_6_PAIR A DG 1005 A O6 DG 5 1_555 B DG 1011 B N1 DG 5 1_555 hydrog TYPE_6_PAIR A DG 1005 A N1 DG 5 1_555 D DG 1023 D O6 DG 5 1_555 hydrog TYPE_6_PAIR A DG 1005 A N2 DG 5 1_555 D DG 1023 D N7 DG 5 1_555 hydrog TYPE_6_PAIR B DG 1008 B N7 DG 2 1_555 C DG 1014 C N2 DG 2 1_555 hydrog TYPE_6_PAIR B DG 1008 B O6 DG 2 1_555 C DG 1014 C N1 DG 2 1_555 hydrog TYPE_6_PAIR B DG 1009 B N7 DG 3 1_555 C DG 1015 C N2 DG 3 1_555 hydrog TYPE_6_PAIR B DG 1009 B O6 DG 3 1_555 C DG 1015 C N1 DG 3 1_555 hydrog TYPE_6_PAIR B DG 1010 B N7 DG 4 1_555 C DG 1016 C N2 DG 4 1_555 hydrog TYPE_6_PAIR B DG 1010 B O6 DG 4 1_555 C DG 1016 C N1 DG 4 1_555 hydrog TYPE_6_PAIR B DG 1011 B N7 DG 5 1_555 C DG 1017 C N2 DG 5 1_555 hydrog TYPE_6_PAIR B DG 1011 B O6 DG 5 1_555 C DG 1017 C N1 DG 5 1_555 hydrog TYPE_6_PAIR C DG 1014 C N7 DG 2 1_555 D DG 1020 D N2 DG 2 1_555 hydrog TYPE_6_PAIR C DG 1014 C O6 DG 2 1_555 D DG 1020 D N1 DG 2 1_555 hydrog TYPE_6_PAIR C DG 1015 C N7 DG 3 1_555 D DG 1021 D N2 DG 3 1_555 hydrog TYPE_6_PAIR C DG 1015 C O6 DG 3 1_555 D DG 1021 D N1 DG 3 1_555 hydrog TYPE_6_PAIR C DG 1016 C N7 DG 4 1_555 D DG 1022 D N2 DG 4 1_555 hydrog TYPE_6_PAIR C DG 1016 C O6 DG 4 1_555 D DG 1022 D N1 DG 4 1_555 hydrog TYPE_6_PAIR C DG 1017 C N7 DG 5 1_555 D DG 1023 D N2 DG 5 1_555 hydrog TYPE_6_PAIR C DG 1017 C O6 DG 5 1_555 D DG 1023 D N1 DG 5 1_555 DNA G-4 Quadruplex Drug Complex, Parallel Quadruplex, DNA 1O0K PDB 1 1O0K 1001 1006 1O0K 1001 1006 1O0K A 1 1 6 1007 1012 1O0K 1007 1012 1O0K B 1 1 6 1013 1018 1O0K 1013 1018 1O0K C 1 1 6 1019 1024 1O0K 1019 1024 1O0K D 1 1 6 BINDING SITE FOR RESIDUE DM1 B 25 B DM1 25 Software 12 BINDING SITE FOR RESIDUE DM1 D 26 D DM1 26 Software 12 BINDING SITE FOR RESIDUE DM1 C 27 C DM1 27 Software 19 BINDING SITE FOR RESIDUE NA A 28 A NA 28 Software 9 BINDING SITE FOR RESIDUE NA C 29 C NA 29 Software 10 BINDING SITE FOR RESIDUE NA A 30 A NA 30 Software 9 A DT 1001 A DT 1 12 2_656 A DT 1001 A DT 1 12 1_555 B DG 1008 B DG 2 12 1_555 B HOH 1107 L HOH 12 1_555 B HOH 1124 L HOH 12 1_555 B HOH 1185 L HOH 12 1_555 C DM1 27 H DM1 12 2_656 C DM1 27 H DM1 12 1_555 C DG 1014 C DG 2 12 1_555 C DG 1015 C DG 3 12 1_555 C DG 1016 C DG 4 12 1_555 D DM1 26 J DM1 12 1_555 A DG 1002 A DG 2 12 1_555 A DG 1003 A DG 3 12 1_555 A HOH 1116 K HOH 12 1_555 B DM1 25 G DM1 12 1_555 C DM1 27 H DM1 12 1_555 C DM1 27 H DM1 12 2_656 C DT 1013 C DT 1 12 2_656 C DT 1018 C DT 6 12 4_545 D DT 1019 D DT 1 12 2_656 D DG 1020 D DG 2 12 1_555 D HOH 1101 N HOH 12 1_555 D HOH 1140 N HOH 12 1_555 A DT 1001 A DT 1 19 2_656 B DM1 25 G DM1 19 1_555 B DM1 25 G DM1 19 2_656 C DT 1013 C DT 1 19 1_555 C DG 1014 C DG 2 19 1_555 C DT 1018 C DT 6 19 4_546 C HOH 1106 M HOH 19 1_555 C HOH 1110 M HOH 19 1_555 C HOH 1126 M HOH 19 1_555 C HOH 1128 M HOH 19 1_555 C HOH 1129 M HOH 19 1_555 C HOH 1132 M HOH 19 4_546 C HOH 1134 M HOH 19 1_555 C HOH 1156 M HOH 19 4_546 C HOH 1159 M HOH 19 1_555 C HOH 1200 M HOH 19 1_555 D DM1 26 J DM1 19 1_555 D DM1 26 J DM1 19 2_656 D DT 1019 D DT 1 19 2_656 A DG 1004 A DG 4 9 1_555 A DG 1005 A DG 5 9 1_555 B DG 1010 B DG 4 9 1_555 B DG 1011 B DG 5 9 1_555 C NA 29 I NA 9 1_555 C DG 1016 C DG 4 9 1_555 C DG 1017 C DG 5 9 1_555 D DG 1022 D DG 4 9 1_555 D DG 1023 D DG 5 9 1_555 A NA 28 E NA 10 1_555 A NA 30 F NA 10 1_555 A DG 1003 A DG 3 10 1_555 A DG 1004 A DG 4 10 1_555 B DG 1009 B DG 3 10 1_555 B DG 1010 B DG 4 10 1_555 C DG 1015 C DG 3 10 1_555 C DG 1016 C DG 4 10 1_555 D DG 1021 D DG 3 10 1_555 D DG 1022 D DG 4 10 1_555 A DG 1002 A DG 2 9 1_555 A DG 1003 A DG 3 9 1_555 B DG 1008 B DG 2 9 1_555 B DG 1009 B DG 3 9 1_555 C NA 29 I NA 9 1_555 C DG 1014 C DG 2 9 1_555 C DG 1015 C DG 3 9 1_555 D DG 1020 D DG 2 9 1_555 D DG 1021 D DG 3 9 1_555 5 C 1 2 1