1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Pari, K.
Mueller, G.A.
Derose, E.F.
Kirby, T.W.
London, R.E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
S
C
N
146
N
C
N
147
N
O
N
148
S
C
N
149
N
C
N
150
N
C
N
151
N
C
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
N
N
167
S
C
N
168
N
C
N
169
N
O
N
170
N
C
N
171
N
C
N
172
N
C
N
173
N
C
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
N
N
189
S
C
N
190
N
C
N
191
N
O
N
192
N
C
N
193
N
C
N
194
N
C
N
195
N
C
N
196
N
N
N
197
N
O
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
N
N
214
S
C
N
215
N
C
N
216
N
O
N
217
N
C
N
218
N
C
N
219
N
S
N
220
N
C
N
221
N
O
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
N
N
234
S
C
N
235
N
C
N
236
N
O
N
237
N
C
Y
238
N
C
Y
239
N
C
Y
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
N
N
257
S
C
N
258
N
C
N
259
N
O
N
260
N
C
N
261
N
C
N
262
N
C
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
O
N
279
N
O
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
R
C
N
292
N
O
N
293
N
C
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
N
C
Y
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
N
Y
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
C
Y
317
N
C
N
318
N
O
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
N
N
332
S
C
N
333
N
C
N
334
N
O
N
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
C
N
342
N
O
N
343
N
O
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
N
N
356
S
C
N
357
N
C
N
358
N
O
N
359
N
C
N
360
N
C
N
361
N
C
N
362
N
O
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
doub
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
Y
233
N
doub
Y
234
N
sing
Y
235
N
sing
N
236
N
sing
Y
237
N
doub
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
doub
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
doub
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
Y
302
N
doub
Y
303
N
sing
Y
304
N
sing
N
305
N
sing
Y
306
N
doub
Y
307
N
sing
Y
308
N
sing
N
309
N
sing
Y
310
N
sing
Y
311
N
doub
N
312
N
sing
Y
313
N
doub
N
314
N
sing
Y
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
Y
330
N
doub
Y
331
N
sing
Y
332
N
sing
N
333
N
sing
Y
334
N
doub
N
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
42
639
650
10.1021/bi0204894
12534276
Solution Structure of the Rnase H Domain of the HIV-1 Reverse Transcriptase in the Presence of Magnesium
2003
10.2210/pdb1o1w/pdb
pdb_00001o1w
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
15276.277
RIBONUCLEASE H
3.1.26.4
1
man
polymer
RNASE H
no
no
MNELYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQYA
LGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL
MNELYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQYA
LGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lentivirus
Escherichia
sample
11676
Human immunodeficiency virus 1
STRAIN HXB2
562
Escherichia coli
BLR
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Data collection
1
0
2003-02-18
1
1
2008-04-26
1
2
2011-07-13
1
3
2022-02-23
1
4
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_ref_seq_dif.details
2003-02-18
SPRSDE
RCSB
Y
RCSB
2003-02-12
REL
REL
THIS STRUCTURE WAS DETERMINED USING STANDARD 3D HETERONUCLEAR TECHNIQUES.
structures with the lowest energy
40
7
3D_13C-SEPARATED_NOESY
3D_ 15N-SEPARATED_NOESY
6.8
AMBIENT
298
K
AUTOMATED STRUCTURE DETERMINATION WITH ARIA
1
1.1 MM RNASE H U-15N, 13C MM TRIS, PH6.8; 90% H20, 10% D20
BRUNGER ET AL
refinement
CNS
1.0
structure solution
ARIA
1.0
structure solution
NMRPipe
2.1
structure solution
NMRView
5.0.4
600
Varian
INOVA
500
Varian
INOVA
MET
1
n
1
MET
1
A
ASN
2
n
2
ASN
2
A
GLU
3
n
3
GLU
3
A
LEU
4
n
4
LEU
4
A
TYR
5
n
5
TYR
5
A
GLN
6
n
6
GLN
6
A
LEU
7
n
7
LEU
7
A
GLU
8
n
8
GLU
8
A
LYS
9
n
9
LYS
9
A
GLU
10
n
10
GLU
10
A
PRO
11
n
11
PRO
11
A
ILE
12
n
12
ILE
12
A
VAL
13
n
13
VAL
13
A
GLY
14
n
14
GLY
14
A
ALA
15
n
15
ALA
15
A
GLU
16
n
16
GLU
16
A
THR
17
n
17
THR
17
A
PHE
18
n
18
PHE
18
A
TYR
19
n
19
TYR
19
A
VAL
20
n
20
VAL
20
A
ASP
21
n
21
ASP
21
A
GLY
22
n
22
GLY
22
A
ALA
23
n
23
ALA
23
A
ALA
24
n
24
ALA
24
A
ASN
25
n
25
ASN
25
A
ARG
26
n
26
ARG
26
A
GLU
27
n
27
GLU
27
A
THR
28
n
28
THR
28
A
LYS
29
n
29
LYS
29
A
LEU
30
n
30
LEU
30
A
GLY
31
n
31
GLY
31
A
LYS
32
n
32
LYS
32
A
ALA
33
n
33
ALA
33
A
GLY
34
n
34
GLY
34
A
TYR
35
n
35
TYR
35
A
VAL
36
n
36
VAL
36
A
THR
37
n
37
THR
37
A
ASN
38
n
38
ASN
38
A
ARG
39
n
39
ARG
39
A
GLY
40
n
40
GLY
40
A
ARG
41
n
41
ARG
41
A
GLN
42
n
42
GLN
42
A
LYS
43
n
43
LYS
43
A
VAL
44
n
44
VAL
44
A
VAL
45
n
45
VAL
45
A
THR
46
n
46
THR
46
A
LEU
47
n
47
LEU
47
A
THR
48
n
48
THR
48
A
ASP
49
n
49
ASP
49
A
THR
50
n
50
THR
50
A
THR
51
n
51
THR
51
A
ASN
52
n
52
ASN
52
A
GLN
53
n
53
GLN
53
A
LYS
54
n
54
LYS
54
A
THR
55
n
55
THR
55
A
GLU
56
n
56
GLU
56
A
LEU
57
n
57
LEU
57
A
GLN
58
n
58
GLN
58
A
ALA
59
n
59
ALA
59
A
ILE
60
n
60
ILE
60
A
TYR
61
n
61
TYR
61
A
LEU
62
n
62
LEU
62
A
ALA
63
n
63
ALA
63
A
LEU
64
n
64
LEU
64
A
GLN
65
n
65
GLN
65
A
ASP
66
n
66
ASP
66
A
SER
67
n
67
SER
67
A
GLY
68
n
68
GLY
68
A
LEU
69
n
69
LEU
69
A
GLU
70
n
70
GLU
70
A
VAL
71
n
71
VAL
71
A
ASN
72
n
72
ASN
72
A
ILE
73
n
73
ILE
73
A
VAL
74
n
74
VAL
74
A
THR
75
n
75
THR
75
A
ASP
76
n
76
ASP
76
A
SER
77
n
77
SER
77
A
GLN
78
n
78
GLN
78
A
TYR
79
n
79
TYR
79
A
ALA
80
n
80
ALA
80
A
LEU
81
n
81
LEU
81
A
GLY
82
n
82
GLY
82
A
ILE
83
n
83
ILE
83
A
ILE
84
n
84
ILE
84
A
GLN
85
n
85
GLN
85
A
ALA
86
n
86
ALA
86
A
GLN
87
n
87
GLN
87
A
PRO
88
n
88
PRO
88
A
ASP
89
n
89
ASP
89
A
GLN
90
n
90
GLN
90
A
SER
91
n
91
SER
91
A
GLU
92
n
92
GLU
92
A
SER
93
n
93
SER
93
A
GLU
94
n
94
GLU
94
A
LEU
95
n
95
LEU
95
A
VAL
96
n
96
VAL
96
A
ASN
97
n
97
ASN
97
A
GLN
98
n
98
GLN
98
A
ILE
99
n
99
ILE
99
A
ILE
100
n
100
ILE
100
A
GLU
101
n
101
GLU
101
A
GLN
102
n
102
GLN
102
A
LEU
103
n
103
LEU
103
A
ILE
104
n
104
ILE
104
A
LYS
105
n
105
LYS
105
A
LYS
106
n
106
LYS
106
A
GLU
107
n
107
GLU
107
A
LYS
108
n
108
LYS
108
A
VAL
109
n
109
VAL
109
A
TYR
110
n
110
TYR
110
A
LEU
111
n
111
LEU
111
A
ALA
112
n
112
ALA
112
A
TRP
113
n
113
TRP
113
A
VAL
114
n
114
VAL
114
A
PRO
115
n
115
PRO
115
A
ALA
116
n
116
ALA
116
A
HIS
117
n
117
HIS
117
A
LYS
118
n
118
LYS
118
A
GLY
119
n
119
GLY
119
A
ILE
120
n
120
ILE
120
A
GLY
121
n
121
GLY
121
A
GLY
122
n
122
GLY
122
A
ASN
123
n
123
ASN
123
A
GLU
124
n
124
GLU
124
A
GLN
125
n
125
GLN
125
A
VAL
126
n
126
VAL
126
A
ASP
127
n
127
ASP
127
A
LYS
128
n
128
LYS
128
A
LEU
129
n
129
LEU
129
A
VAL
130
n
130
VAL
130
A
SER
131
n
131
SER
131
A
ALA
132
n
132
ALA
132
A
GLY
133
n
133
GLY
133
A
ILE
134
n
134
ILE
134
A
ARG
135
n
135
ARG
135
A
LYS
136
n
136
LYS
136
A
VAL
137
n
137
VAL
137
A
LEU
138
n
138
LEU
138
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
45
A
O
VAL
45
A
N
ALA
33
A
N
ALA
33
A
O
VAL
36
A
O
VAL
36
A
N
TYR
19
A
N
TYR
19
A
N
PHE
18
A
N
PHE
18
A
O
ASN
72
A
O
ASN
72
A
N
VAL
71
A
N
VAL
71
A
O
LYS
108
A
O
LYS
108
1
A
A
HG
H
SER
GLY
67
68
1.35
2
A
A
HD1
H
TYR
VAL
19
36
1.33
2
A
A
HA
HG3
ILE
PRO
84
88
1.35
3
A
A
HH
HB3
TYR
ASP
19
21
1.27
3
A
A
HB3
HG2
GLU
GLU
70
107
1.35
4
A
A
HH
HE21
TYR
GLN
5
87
1.06
4
A
A
HD1
H
TYR
VAL
19
36
1.26
4
A
A
HB
HB3
THR
ARG
37
41
1.33
7
A
A
HD1
H
TYR
VAL
19
36
1.26
7
A
A
HB2
HA3
TYR
GLY
19
121
1.33
2
A
A
CE1
CZ
TYR
TYR
19
19
0.092
0.013
1.381
1.473
N
2
A
A
CZ
CE2
TYR
TYR
19
19
-0.095
0.013
1.381
1.286
N
4
A
A
CE1
CZ
TYR
TYR
35
35
-0.079
0.013
1.381
1.302
N
1
A
ASN
2
53.94
-157.96
1
A
TYR
5
173.36
-179.46
1
A
GLU
8
-110.69
-89.66
1
A
LYS
9
59.19
0.50
1
A
PRO
11
-39.74
122.17
1
A
LYS
29
50.06
70.36
1
A
LEU
30
-173.09
149.99
1
A
ALA
33
-165.35
118.59
1
A
ASN
38
-55.93
-4.40
1
A
LEU
69
-103.90
-85.99
1
A
SER
77
-165.10
108.44
1
A
ALA
86
-90.22
47.65
1
A
GLN
87
32.85
70.53
1
A
PRO
88
-81.08
32.76
1
A
GLN
90
-163.78
20.68
1
A
GLU
92
49.25
-132.40
1
A
SER
93
-38.88
144.66
1
A
GLU
107
-92.93
-80.77
1
A
PRO
115
-38.16
111.50
1
A
ALA
116
169.08
-133.96
1
A
HIS
117
-179.24
-1.96
1
A
ASP
127
-97.02
-72.29
1
A
LYS
128
-161.72
34.86
1
A
LEU
129
55.79
79.68
1
A
SER
131
-109.14
61.61
1
A
ILE
134
-90.81
53.52
1
A
ARG
135
-141.34
33.40
2
A
ASN
2
-99.58
-158.89
2
A
LEU
4
-148.69
-24.30
2
A
GLU
8
-120.58
-85.63
2
A
LYS
9
57.49
3.75
2
A
PRO
11
-43.30
103.65
2
A
ASP
21
-171.62
133.36
2
A
ASN
25
-50.47
100.69
2
A
ALA
33
-164.50
119.02
2
A
ASN
38
-55.43
-6.35
2
A
LEU
69
-132.13
-95.73
2
A
SER
77
-165.66
111.77
2
A
ALA
86
-97.74
47.30
2
A
GLN
87
35.53
68.26
2
A
PRO
88
-82.87
33.27
2
A
GLN
90
-165.62
21.14
2
A
GLU
92
52.09
-121.94
2
A
SER
93
-37.92
142.87
2
A
LYS
108
162.16
166.81
2
A
PRO
115
-39.87
111.68
2
A
ALA
116
178.52
-160.49
2
A
HIS
117
-177.94
46.86
2
A
ILE
120
-160.95
-85.46
2
A
ASN
123
44.19
29.23
2
A
VAL
126
56.66
83.84
2
A
ASP
127
-166.46
-21.25
2
A
LYS
128
-147.56
27.46
2
A
ALA
132
57.69
-175.40
3
A
ASN
2
-83.25
-93.97
3
A
GLU
3
-132.97
-45.26
3
A
LEU
4
-156.12
18.56
3
A
TYR
5
174.77
-178.17
3
A
LYS
9
59.04
-10.19
3
A
PRO
11
-32.69
112.30
3
A
ASP
21
-172.89
138.88
3
A
ALA
33
-165.65
118.81
3
A
ASN
38
-56.82
-4.49
3
A
LEU
69
-113.07
-93.92
3
A
SER
77
-163.03
93.56
3
A
GLN
87
24.71
67.37
3
A
ASP
89
-58.74
-9.18
3
A
GLN
90
-166.34
20.63
3
A
GLU
92
41.78
-120.25
3
A
LYS
106
-128.51
-161.36
3
A
GLU
107
-96.55
-60.58
3
A
ALA
116
29.14
53.20
3
A
GLU
124
59.43
-88.67
3
A
VAL
126
-95.93
30.46
3
A
ASP
127
54.71
71.55
3
A
VAL
130
-123.81
-81.82
3
A
ALA
132
60.34
-89.90
4
A
ASN
2
-73.69
-152.36
4
A
TYR
5
167.97
159.30
4
A
GLU
8
-158.19
54.14
4
A
ASP
21
-174.19
141.86
4
A
ASN
38
-49.76
-17.64
4
A
LEU
69
-104.30
-89.04
4
A
SER
77
-161.77
96.67
4
A
ALA
86
-91.79
32.74
4
A
PRO
88
-56.52
-87.78
4
A
ASP
89
59.39
-18.60
4
A
GLN
90
-174.78
12.76
4
A
GLU
92
52.80
-128.06
4
A
LYS
106
-140.62
-153.15
4
A
GLU
107
-96.26
-86.74
4
A
ALA
116
149.28
142.75
4
A
ILE
120
70.08
129.31
4
A
GLN
125
-80.48
-98.59
4
A
VAL
126
-155.22
63.71
4
A
ASP
127
-82.29
-75.49
4
A
ARG
135
-142.39
26.94
5
A
ASN
2
-132.83
-78.79
5
A
GLU
3
-170.25
-73.33
5
A
TYR
5
166.53
170.30
5
A
LEU
7
-68.66
96.10
5
A
GLU
8
-97.32
-84.60
5
A
LYS
9
64.36
-13.07
5
A
PRO
11
-39.67
126.25
5
A
ASN
25
-49.82
108.46
5
A
LYS
29
46.92
76.55
5
A
LEU
30
-178.02
138.90
5
A
ALA
33
-162.06
117.84
5
A
ASN
38
-53.67
-6.19
5
A
SER
67
-58.17
95.38
5
A
LEU
69
-145.61
-104.92
5
A
SER
77
-163.84
98.99
5
A
GLN
87
12.61
70.99
5
A
PRO
88
-77.73
32.19
5
A
GLN
90
-160.72
19.28
5
A
GLU
92
48.98
-124.05
5
A
SER
93
-38.53
144.36
5
A
LYS
106
-126.24
-159.16
5
A
GLU
107
-97.04
-87.16
5
A
PRO
115
-37.24
112.06
5
A
ALA
116
178.28
-34.74
5
A
ILE
120
-164.59
-39.35
5
A
ASN
123
-99.04
31.69
5
A
GLN
125
-164.09
-52.52
5
A
ASP
127
-163.26
2.43
5
A
LEU
129
-96.57
-78.74
5
A
VAL
130
-108.85
-152.48
5
A
ALA
132
-132.50
-72.76
6
A
ASN
2
-92.25
-144.66
6
A
GLU
3
-128.34
-61.43
6
A
GLN
6
-57.81
109.72
6
A
GLU
8
-108.38
-83.73
6
A
LYS
9
59.83
-2.32
6
A
ASP
21
-172.46
130.45
6
A
ALA
33
-162.24
117.57
6
A
ASN
38
-54.47
-9.36
6
A
LEU
69
-140.08
-95.63
6
A
SER
77
-165.15
108.42
6
A
GLN
87
-3.41
77.90
6
A
PRO
88
-83.23
31.37
6
A
GLN
90
-162.32
30.82
6
A
GLU
92
43.61
-117.72
6
A
SER
93
-44.57
151.20
6
A
LYS
106
-132.43
-146.98
6
A
LYS
108
156.15
167.64
6
A
PRO
115
-37.55
152.54
6
A
ALA
116
73.86
117.35
6
A
GLU
124
-97.21
-83.89
6
A
GLN
125
-108.66
-87.19
6
A
ASP
127
-82.30
-158.66
6
A
LEU
129
53.94
83.68
6
A
SER
131
60.04
-90.67
6
A
ILE
134
36.11
59.00
6
A
LYS
136
-103.96
-138.47
7
A
ASN
2
60.83
177.01
7
A
LEU
4
-162.62
15.31
7
A
TYR
5
172.78
153.51
7
A
GLN
6
-58.11
101.72
7
A
LEU
7
-59.62
101.76
7
A
GLU
8
-107.08
-66.70
7
A
LYS
9
61.67
-75.65
7
A
VAL
13
-141.78
10.03
7
A
LYS
29
49.28
79.74
7
A
LEU
30
178.05
143.91
7
A
ALA
33
-164.67
118.35
7
A
ASN
38
-61.11
1.89
7
A
LEU
69
-100.22
-86.64
7
A
SER
77
-165.91
99.22
7
A
ILE
84
-49.49
-18.41
7
A
ALA
86
-94.64
47.81
7
A
GLN
87
34.95
70.98
7
A
PRO
88
-84.05
31.15
7
A
GLN
90
-163.69
13.39
7
A
GLU
92
60.32
-128.32
7
A
LYS
105
-68.73
8.64
7
A
LYS
108
179.39
169.28
7
A
ALA
116
168.46
-146.01
7
A
HIS
117
169.68
42.71
7
A
ILE
120
-167.61
-38.78
7
A
GLU
124
-162.41
-44.53
7
A
GLN
125
-171.10
-20.00
7
A
ASP
127
59.56
89.15
7
A
LEU
129
-164.48
-7.17
7
A
SER
131
-153.24
-84.75
7
A
ALA
132
-166.18
46.13
7
A
LYS
136
-69.23
-179.49
SOLUTION STRUCTURE OF THE RNASE H DOMAIN OF THE HIV-1 REVERSE TRANSCRIPTASE IN THE PRESENCE OF MAGNESIUM
1
N
N
A
THR
51
A
THR
51
HELX_P
A
LEU
64
A
LEU
64
1
1
14
A
SER
77
A
SER
77
HELX_P
A
GLN
85
A
GLN
85
1
2
9
A
SER
93
A
SER
93
HELX_P
A
LYS
106
A
LYS
106
1
3
14
HYDROLASE
HIV-1, RNASE H DOMAIN, HIV-1 REVERSE TRANSCRIPTASE, SOLUTION STRUCTURE, METAL BINDING, HYDROLASE
POL_HV1H2
UNP
1
P04585
582
715
1O1W
5
138
P04585
A
1
5
138
1
cloning artifact
MET
1
1O1W
A
P04585
UNP
1
1
cloning artifact
ASN
2
1O1W
A
P04585
UNP
2
1
cloning artifact
GLU
3
1O1W
A
P04585
UNP
3
1
cloning artifact
LEU
4
1O1W
A
P04585
UNP
4
5
anti-parallel
anti-parallel
parallel
parallel
A
ARG
41
A
ARG
41
A
THR
46
A
THR
46
A
LYS
32
A
LYS
32
A
THR
37
A
THR
37
A
THR
17
A
THR
17
A
VAL
20
A
VAL
20
A
GLU
70
A
GLU
70
A
VAL
74
A
VAL
74
A
LYS
108
A
LYS
108
A
ALA
112
A
ALA
112
1
P 1