0.007552
0.000000
0.000000
0.000000
0.023929
0.000000
0.000000
0.000000
0.019335
0.00000
0.00000
0.00000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
132.410
41.790
51.720
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proteins
PSFGEY
0867
0887-3585
56
167
170
10.1002/prot.20120
15162496
Crystal structure of a glycerophosphodiester phosphodiesterase (GDPD) from Thermotoga maritima (TM1621) at 1.60 A resolution.
2004
10.2210/pdb1o1z/pdb
pdb_00001o1z
100.0
1
water cooled; sagitally focusing 2nd crystal, Rosenbaum-Rock vertical focusing mirror
CCD
2002-10-26
APS-1
Rosenbaum-Rock double-crystal monochromator
MAD
M
x-ray
1
0.98011
1.0
0.97938
1.0
0.97918
1.0
0.95671
1.0
19-BM
APS
0.98011, 0.97938, 0.97918, 0.95671
SYNCHROTRON
APS BEAMLINE 19-BM
27170.043
glycerophosphodiester phosphodiesterase
3.1.4.46
1
man
polymer
22.990
SODIUM ION
1
syn
non-polymer
18.015
water
422
nat
water
GDPD
no
no
MGSDKIHHHHHHVIVLGHRGYSAKYLENTLEAFMKAIEAGANGVELDVRLSKDGKVVVSHDEDLKRLFGLDVKIRDATVS
ELKELTDGKITTLKEVFENVSDDKIINIEIKEREAADAVLEISKKRKNLIFSSFDLDLLDEKFKGTKYGYLIDEENYGSI
ENFVERVEKERPYSLHVPYQAFELEYAVEVLRSFRKKGIVIFVWTLNDPEIYRKIRREIDGVITDEVELFVKLR
MGSDKIHHHHHHVIVLGHRGYSAKYLENTLEAFMKAIEAGANGVELDVRLSKDGKVVVSHDEDLKRLFGLDVKIRDATVS
ELKELTDGKITTLKEVFENVSDDKIINIEIKEREAADAVLEISKKRKNLIFSSFDLDLLDEKFKGTKYGYLIDEENYGSI
ENFVERVEKERPYSLHVPYQAFELEYAVEVLRSFRKKGIVIFVWTLNDPEIYRKIRREIDGVITDEVELFVKLR
A
283478
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Thermotoga
Escherichia
sample
TM1621
2336
Thermotoga maritima
562
Escherichia coli
PLASMID
1
2.22
44.16
9.60
40% (v/v) PEG-600, 0.1M CHES pH 9.5, pH 9.6, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K, pH 9.60
277
Joint Center for Structural Genomics
JCSG
PSI, Protein Structure Initiative
software
pdbx_database_related
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Advisory
Version format compliance
Refinement description
Data collection
Database references
Database references
Derived calculations
1
0
2003-04-01
1
1
2008-04-26
1
2
2011-07-13
1
3
2017-10-04
1
4
2018-07-18
1
5
2023-01-25
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2003-02-12
REL
REL
NA
SODIUM ION
HOH
water
NA
602
2
NA
NA
602
A
HOH
1
3
HOH
HOH
603
A
HOH
2
3
HOH
HOH
604
A
HOH
3
3
HOH
HOH
605
A
HOH
4
3
HOH
HOH
606
A
HOH
5
3
HOH
HOH
607
A
HOH
6
3
HOH
HOH
608
A
HOH
7
3
HOH
HOH
609
A
HOH
8
3
HOH
HOH
610
A
HOH
9
3
HOH
HOH
611
A
HOH
10
3
HOH
HOH
612
A
HOH
12
3
HOH
HOH
613
A
HOH
13
3
HOH
HOH
614
A
HOH
14
3
HOH
HOH
615
A
HOH
15
3
HOH
HOH
616
A
HOH
16
3
HOH
HOH
617
A
HOH
17
3
HOH
HOH
618
A
HOH
19
3
HOH
HOH
619
A
HOH
20
3
HOH
HOH
620
A
HOH
21
3
HOH
HOH
621
A
HOH
22
3
HOH
HOH
622
A
HOH
23
3
HOH
HOH
623
A
HOH
24
3
HOH
HOH
624
A
HOH
25
3
HOH
HOH
625
A
HOH
26
3
HOH
HOH
626
A
HOH
27
3
HOH
HOH
627
A
HOH
28
3
HOH
HOH
628
A
HOH
29
3
HOH
HOH
629
A
HOH
30
3
HOH
HOH
630
A
HOH
31
3
HOH
HOH
631
A
HOH
32
3
HOH
HOH
632
A
HOH
33
3
HOH
HOH
633
A
HOH
34
3
HOH
HOH
634
A
HOH
35
3
HOH
HOH
635
A
HOH
36
3
HOH
HOH
636
A
HOH
37
3
HOH
HOH
637
A
HOH
38
3
HOH
HOH
638
A
HOH
39
3
HOH
HOH
639
A
HOH
40
3
HOH
HOH
640
A
HOH
41
3
HOH
HOH
641
A
HOH
42
3
HOH
HOH
642
A
HOH
43
3
HOH
HOH
643
A
HOH
44
3
HOH
HOH
644
A
HOH
45
3
HOH
HOH
645
A
HOH
46
3
HOH
HOH
646
A
HOH
47
3
HOH
HOH
647
A
HOH
48
3
HOH
HOH
648
A
HOH
49
3
HOH
HOH
649
A
HOH
50
3
HOH
HOH
650
A
HOH
51
3
HOH
HOH
651
A
HOH
52
3
HOH
HOH
652
A
HOH
53
3
HOH
HOH
653
A
HOH
54
3
HOH
HOH
654
A
HOH
55
3
HOH
HOH
655
A
HOH
56
3
HOH
HOH
656
A
HOH
57
3
HOH
HOH
657
A
HOH
58
3
HOH
HOH
658
A
HOH
59
3
HOH
HOH
659
A
HOH
60
3
HOH
HOH
660
A
HOH
61
3
HOH
HOH
661
A
HOH
62
3
HOH
HOH
662
A
HOH
63
3
HOH
HOH
663
A
HOH
64
3
HOH
HOH
664
A
HOH
65
3
HOH
HOH
665
A
HOH
66
3
HOH
HOH
666
A
HOH
67
3
HOH
HOH
667
A
HOH
68
3
HOH
HOH
668
A
HOH
69
3
HOH
HOH
669
A
HOH
70
3
HOH
HOH
670
A
HOH
71
3
HOH
HOH
671
A
HOH
72
3
HOH
HOH
672
A
HOH
73
3
HOH
HOH
673
A
HOH
74
3
HOH
HOH
674
A
HOH
75
3
HOH
HOH
675
A
HOH
76
3
HOH
HOH
676
A
HOH
77
3
HOH
HOH
677
A
HOH
78
3
HOH
HOH
678
A
HOH
79
3
HOH
HOH
679
A
HOH
80
3
HOH
HOH
680
A
HOH
81
3
HOH
HOH
681
A
HOH
82
3
HOH
HOH
682
A
HOH
83
3
HOH
HOH
683
A
HOH
84
3
HOH
HOH
684
A
HOH
85
3
HOH
HOH
685
A
HOH
86
3
HOH
HOH
686
A
HOH
87
3
HOH
HOH
687
A
HOH
88
3
HOH
HOH
688
A
HOH
89
3
HOH
HOH
689
A
HOH
90
3
HOH
HOH
690
A
HOH
91
3
HOH
HOH
691
A
HOH
92
3
HOH
HOH
692
A
HOH
93
3
HOH
HOH
693
A
HOH
94
3
HOH
HOH
694
A
HOH
95
3
HOH
HOH
695
A
HOH
96
3
HOH
HOH
696
A
HOH
97
3
HOH
HOH
697
A
HOH
98
3
HOH
HOH
698
A
HOH
99
3
HOH
HOH
699
A
HOH
100
3
HOH
HOH
700
A
HOH
101
3
HOH
HOH
701
A
HOH
102
3
HOH
HOH
702
A
HOH
103
3
HOH
HOH
703
A
HOH
104
3
HOH
HOH
704
A
HOH
105
3
HOH
HOH
705
A
HOH
106
3
HOH
HOH
706
A
HOH
107
3
HOH
HOH
707
A
HOH
108
3
HOH
HOH
708
A
HOH
109
3
HOH
HOH
709
A
HOH
110
3
HOH
HOH
710
A
HOH
111
3
HOH
HOH
711
A
HOH
113
3
HOH
HOH
712
A
HOH
114
3
HOH
HOH
713
A
HOH
115
3
HOH
HOH
714
A
HOH
116
3
HOH
HOH
715
A
HOH
117
3
HOH
HOH
716
A
HOH
118
3
HOH
HOH
717
A
HOH
119
3
HOH
HOH
718
A
HOH
120
3
HOH
HOH
719
A
HOH
121
3
HOH
HOH
720
A
HOH
122
3
HOH
HOH
721
A
HOH
123
3
HOH
HOH
722
A
HOH
124
3
HOH
HOH
723
A
HOH
125
3
HOH
HOH
724
A
HOH
126
3
HOH
HOH
725
A
HOH
127
3
HOH
HOH
726
A
HOH
128
3
HOH
HOH
727
A
HOH
129
3
HOH
HOH
728
A
HOH
130
3
HOH
HOH
729
A
HOH
131
3
HOH
HOH
730
A
HOH
132
3
HOH
HOH
731
A
HOH
133
3
HOH
HOH
732
A
HOH
134
3
HOH
HOH
733
A
HOH
135
3
HOH
HOH
734
A
HOH
136
3
HOH
HOH
735
A
HOH
137
3
HOH
HOH
736
A
HOH
138
3
HOH
HOH
737
A
HOH
139
3
HOH
HOH
738
A
HOH
140
3
HOH
HOH
739
A
HOH
141
3
HOH
HOH
740
A
HOH
142
3
HOH
HOH
741
A
HOH
143
3
HOH
HOH
742
A
HOH
144
3
HOH
HOH
743
A
HOH
145
3
HOH
HOH
744
A
HOH
146
3
HOH
HOH
745
A
HOH
147
3
HOH
HOH
746
A
HOH
149
3
HOH
HOH
747
A
HOH
150
3
HOH
HOH
748
A
HOH
151
3
HOH
HOH
749
A
HOH
152
3
HOH
HOH
750
A
HOH
153
3
HOH
HOH
751
A
HOH
154
3
HOH
HOH
752
A
HOH
155
3
HOH
HOH
753
A
HOH
156
3
HOH
HOH
754
A
HOH
157
3
HOH
HOH
755
A
HOH
158
3
HOH
HOH
756
A
HOH
160
3
HOH
HOH
757
A
HOH
161
3
HOH
HOH
758
A
HOH
162
3
HOH
HOH
759
A
HOH
163
3
HOH
HOH
760
A
HOH
164
3
HOH
HOH
761
A
HOH
165
3
HOH
HOH
762
A
HOH
166
3
HOH
HOH
763
A
HOH
167
3
HOH
HOH
764
A
HOH
168
3
HOH
HOH
765
A
HOH
169
3
HOH
HOH
766
A
HOH
170
3
HOH
HOH
767
A
HOH
171
3
HOH
HOH
768
A
HOH
172
3
HOH
HOH
769
A
HOH
173
3
HOH
HOH
770
A
HOH
174
3
HOH
HOH
771
A
HOH
175
3
HOH
HOH
772
A
HOH
176
3
HOH
HOH
773
A
HOH
177
3
HOH
HOH
774
A
HOH
178
3
HOH
HOH
775
A
HOH
179
3
HOH
HOH
776
A
HOH
180
3
HOH
HOH
777
A
HOH
181
3
HOH
HOH
778
A
HOH
182
3
HOH
HOH
779
A
HOH
183
3
HOH
HOH
780
A
HOH
184
3
HOH
HOH
781
A
HOH
185
3
HOH
HOH
782
A
HOH
186
3
HOH
HOH
783
A
HOH
187
3
HOH
HOH
784
A
HOH
188
3
HOH
HOH
785
A
HOH
189
3
HOH
HOH
786
A
HOH
190
3
HOH
HOH
787
A
HOH
191
3
HOH
HOH
788
A
HOH
192
3
HOH
HOH
789
A
HOH
193
3
HOH
HOH
790
A
HOH
194
3
HOH
HOH
791
A
HOH
195
3
HOH
HOH
792
A
HOH
196
3
HOH
HOH
793
A
HOH
197
3
HOH
HOH
794
A
HOH
198
3
HOH
HOH
795
A
HOH
200
3
HOH
HOH
796
A
HOH
201
3
HOH
HOH
797
A
HOH
202
3
HOH
HOH
798
A
HOH
203
3
HOH
HOH
799
A
HOH
204
3
HOH
HOH
800
A
HOH
207
3
HOH
HOH
801
A
HOH
208
3
HOH
HOH
802
A
HOH
209
3
HOH
HOH
803
A
HOH
210
3
HOH
HOH
804
A
HOH
211
3
HOH
HOH
805
A
HOH
212
3
HOH
HOH
806
A
HOH
213
3
HOH
HOH
807
A
HOH
215
3
HOH
HOH
808
A
HOH
216
3
HOH
HOH
809
A
HOH
217
3
HOH
HOH
810
A
HOH
218
3
HOH
HOH
811
A
HOH
219
3
HOH
HOH
812
A
HOH
220
3
HOH
HOH
813
A
HOH
221
3
HOH
HOH
814
A
HOH
222
3
HOH
HOH
815
A
HOH
224
3
HOH
HOH
816
A
HOH
225
3
HOH
HOH
817
A
HOH
226
3
HOH
HOH
818
A
HOH
227
3
HOH
HOH
819
A
HOH
228
3
HOH
HOH
820
A
HOH
229
3
HOH
HOH
821
A
HOH
230
3
HOH
HOH
822
A
HOH
231
3
HOH
HOH
823
A
HOH
233
3
HOH
HOH
824
A
HOH
234
3
HOH
HOH
825
A
HOH
237
3
HOH
HOH
826
A
HOH
238
3
HOH
HOH
827
A
HOH
239
3
HOH
HOH
828
A
HOH
241
3
HOH
HOH
829
A
HOH
242
3
HOH
HOH
830
A
HOH
243
3
HOH
HOH
831
A
HOH
244
3
HOH
HOH
832
A
HOH
246
3
HOH
HOH
833
A
HOH
247
3
HOH
HOH
834
A
HOH
248
3
HOH
HOH
835
A
HOH
249
3
HOH
HOH
836
A
HOH
250
3
HOH
HOH
837
A
HOH
252
3
HOH
HOH
838
A
HOH
254
3
HOH
HOH
839
A
HOH
256
3
HOH
HOH
840
A
HOH
257
3
HOH
HOH
841
A
HOH
258
3
HOH
HOH
842
A
HOH
259
3
HOH
HOH
843
A
HOH
260
3
HOH
HOH
844
A
HOH
261
3
HOH
HOH
845
A
HOH
262
3
HOH
HOH
846
A
HOH
263
3
HOH
HOH
847
A
HOH
264
3
HOH
HOH
848
A
HOH
265
3
HOH
HOH
849
A
HOH
266
3
HOH
HOH
850
A
HOH
267
3
HOH
HOH
851
A
HOH
268
3
HOH
HOH
852
A
HOH
270
3
HOH
HOH
853
A
HOH
271
3
HOH
HOH
854
A
HOH
272
3
HOH
HOH
855
A
HOH
273
3
HOH
HOH
856
A
HOH
274
3
HOH
HOH
857
A
HOH
275
3
HOH
HOH
858
A
HOH
276
3
HOH
HOH
859
A
HOH
277
3
HOH
HOH
860
A
HOH
278
3
HOH
HOH
861
A
HOH
279
3
HOH
HOH
862
A
HOH
280
3
HOH
HOH
863
A
HOH
281
3
HOH
HOH
864
A
HOH
282
3
HOH
HOH
865
A
HOH
283
3
HOH
HOH
866
A
HOH
284
3
HOH
HOH
867
A
HOH
285
3
HOH
HOH
868
A
HOH
286
3
HOH
HOH
869
A
HOH
287
3
HOH
HOH
870
A
HOH
288
3
HOH
HOH
871
A
HOH
289
3
HOH
HOH
872
A
HOH
290
3
HOH
HOH
873
A
HOH
291
3
HOH
HOH
874
A
HOH
292
3
HOH
HOH
875
A
HOH
293
3
HOH
HOH
876
A
HOH
294
3
HOH
HOH
877
A
HOH
295
3
HOH
HOH
878
A
HOH
296
3
HOH
HOH
879
A
HOH
297
3
HOH
HOH
880
A
HOH
298
3
HOH
HOH
881
A
HOH
299
3
HOH
HOH
882
A
HOH
300
3
HOH
HOH
883
A
HOH
301
3
HOH
HOH
884
A
HOH
302
3
HOH
HOH
885
A
HOH
303
3
HOH
HOH
886
A
HOH
304
3
HOH
HOH
887
A
HOH
305
3
HOH
HOH
888
A
HOH
308
3
HOH
HOH
889
A
HOH
309
3
HOH
HOH
890
A
HOH
312
3
HOH
HOH
891
A
HOH
313
3
HOH
HOH
892
A
HOH
314
3
HOH
HOH
893
A
HOH
315
3
HOH
HOH
894
A
HOH
316
3
HOH
HOH
895
A
HOH
317
3
HOH
HOH
896
A
HOH
318
3
HOH
HOH
897
A
HOH
319
3
HOH
HOH
898
A
HOH
320
3
HOH
HOH
899
A
HOH
321
3
HOH
HOH
900
A
HOH
322
3
HOH
HOH
901
A
HOH
323
3
HOH
HOH
902
A
HOH
324
3
HOH
HOH
903
A
HOH
325
3
HOH
HOH
904
A
HOH
326
3
HOH
HOH
905
A
HOH
328
3
HOH
HOH
906
A
HOH
329
3
HOH
HOH
907
A
HOH
330
3
HOH
HOH
908
A
HOH
331
3
HOH
HOH
909
A
HOH
332
3
HOH
HOH
910
A
HOH
333
3
HOH
HOH
911
A
HOH
334
3
HOH
HOH
912
A
HOH
335
3
HOH
HOH
913
A
HOH
336
3
HOH
HOH
914
A
HOH
337
3
HOH
HOH
915
A
HOH
338
3
HOH
HOH
916
A
HOH
339
3
HOH
HOH
917
A
HOH
340
3
HOH
HOH
918
A
HOH
341
3
HOH
HOH
919
A
HOH
342
3
HOH
HOH
920
A
HOH
343
3
HOH
HOH
921
A
HOH
344
3
HOH
HOH
922
A
HOH
345
3
HOH
HOH
923
A
HOH
346
3
HOH
HOH
924
A
HOH
347
3
HOH
HOH
925
A
HOH
348
3
HOH
HOH
926
A
HOH
349
3
HOH
HOH
927
A
HOH
350
3
HOH
HOH
928
A
HOH
351
3
HOH
HOH
929
A
HOH
352
3
HOH
HOH
930
A
HOH
353
3
HOH
HOH
931
A
HOH
354
3
HOH
HOH
932
A
HOH
355
3
HOH
HOH
933
A
HOH
356
3
HOH
HOH
934
A
HOH
357
3
HOH
HOH
935
A
HOH
358
3
HOH
HOH
936
A
HOH
359
3
HOH
HOH
937
A
HOH
360
3
HOH
HOH
938
A
HOH
361
3
HOH
HOH
939
A
HOH
362
3
HOH
HOH
940
A
HOH
363
3
HOH
HOH
941
A
HOH
364
3
HOH
HOH
942
A
HOH
365
3
HOH
HOH
943
A
HOH
366
3
HOH
HOH
944
A
HOH
367
3
HOH
HOH
945
A
HOH
368
3
HOH
HOH
946
A
HOH
369
3
HOH
HOH
947
A
HOH
370
3
HOH
HOH
948
A
HOH
371
3
HOH
HOH
949
A
HOH
372
3
HOH
HOH
950
A
HOH
373
3
HOH
HOH
951
A
HOH
374
3
HOH
HOH
952
A
HOH
375
3
HOH
HOH
953
A
HOH
376
3
HOH
HOH
954
A
HOH
377
3
HOH
HOH
955
A
HOH
378
3
HOH
HOH
956
A
HOH
379
3
HOH
HOH
957
A
HOH
380
3
HOH
HOH
958
A
HOH
381
3
HOH
HOH
959
A
HOH
382
3
HOH
HOH
960
A
HOH
383
3
HOH
HOH
961
A
HOH
384
3
HOH
HOH
962
A
HOH
385
3
HOH
HOH
963
A
HOH
386
3
HOH
HOH
964
A
HOH
387
3
HOH
HOH
965
A
HOH
388
3
HOH
HOH
966
A
HOH
389
3
HOH
HOH
967
A
HOH
390
3
HOH
HOH
968
A
HOH
391
3
HOH
HOH
969
A
HOH
392
3
HOH
HOH
970
A
HOH
393
3
HOH
HOH
971
A
HOH
394
3
HOH
HOH
972
A
HOH
395
3
HOH
HOH
973
A
HOH
396
3
HOH
HOH
974
A
HOH
397
3
HOH
HOH
975
A
HOH
398
3
HOH
HOH
976
A
HOH
399
3
HOH
HOH
977
A
HOH
400
3
HOH
HOH
978
A
HOH
401
3
HOH
HOH
979
A
HOH
402
3
HOH
HOH
980
A
HOH
403
3
HOH
HOH
981
A
HOH
404
3
HOH
HOH
982
A
HOH
405
3
HOH
HOH
983
A
HOH
406
3
HOH
HOH
984
A
HOH
407
3
HOH
HOH
985
A
HOH
408
3
HOH
HOH
986
A
HOH
409
3
HOH
HOH
987
A
HOH
410
3
HOH
HOH
988
A
HOH
411
3
HOH
HOH
989
A
HOH
412
3
HOH
HOH
990
A
HOH
413
3
HOH
HOH
991
A
HOH
414
3
HOH
HOH
992
A
HOH
415
3
HOH
HOH
993
A
HOH
416
3
HOH
HOH
994
A
HOH
417
3
HOH
HOH
995
A
HOH
418
3
HOH
HOH
996
A
HOH
419
3
HOH
HOH
997
A
HOH
420
3
HOH
HOH
998
A
HOH
421
3
HOH
HOH
999
A
HOH
422
3
HOH
HOH
1000
A
HOH
423
3
HOH
HOH
1001
A
HOH
424
3
HOH
HOH
1002
A
HOH
425
3
HOH
HOH
1003
A
HOH
426
3
HOH
HOH
1004
A
HOH
427
3
HOH
HOH
1005
A
HOH
428
3
HOH
HOH
1006
A
HOH
429
3
HOH
HOH
1007
A
HOH
430
3
HOH
HOH
1008
A
HOH
431
3
HOH
HOH
1009
A
HOH
432
3
HOH
HOH
1010
A
HOH
433
3
HOH
HOH
1011
A
HOH
434
3
HOH
HOH
1012
A
HOH
435
3
HOH
HOH
1013
A
HOH
436
3
HOH
HOH
1014
A
HOH
439
3
HOH
HOH
1015
A
HOH
441
3
HOH
HOH
1016
A
HOH
442
3
HOH
HOH
1017
A
HOH
443
3
HOH
HOH
1018
A
HOH
444
3
HOH
HOH
1019
A
HOH
445
3
HOH
HOH
1020
A
HOH
446
3
HOH
HOH
1021
A
HOH
447
3
HOH
HOH
1022
A
HOH
448
3
HOH
HOH
1023
A
HOH
449
3
HOH
HOH
1024
A
n
1
-11
A
n
2
-10
A
n
3
-9
A
n
4
-8
A
n
5
-7
A
n
6
-6
A
n
7
-5
A
n
8
-4
A
HIS
-3
n
9
HIS
-3
A
HIS
-2
n
10
HIS
-2
A
HIS
-1
n
11
HIS
-1
A
HIS
0
n
12
HIS
0
A
VAL
1
n
13
VAL
1
A
ILE
2
n
14
ILE
2
A
VAL
3
n
15
VAL
3
A
LEU
4
n
16
LEU
4
A
GLY
5
n
17
GLY
5
A
HIS
6
n
18
HIS
6
A
ARG
7
n
19
ARG
7
A
GLY
8
n
20
GLY
8
A
TYR
9
n
21
TYR
9
A
SER
10
n
22
SER
10
A
ALA
11
n
23
ALA
11
A
LYS
12
n
24
LYS
12
A
TYR
13
n
25
TYR
13
A
LEU
14
n
26
LEU
14
A
GLU
15
n
27
GLU
15
A
ASN
16
n
28
ASN
16
A
THR
17
n
29
THR
17
A
LEU
18
n
30
LEU
18
A
GLU
19
n
31
GLU
19
A
ALA
20
n
32
ALA
20
A
PHE
21
n
33
PHE
21
A
MET
22
n
34
MET
22
A
LYS
23
n
35
LYS
23
A
ALA
24
n
36
ALA
24
A
ILE
25
n
37
ILE
25
A
GLU
26
n
38
GLU
26
A
ALA
27
n
39
ALA
27
A
GLY
28
n
40
GLY
28
A
ALA
29
n
41
ALA
29
A
ASN
30
n
42
ASN
30
A
GLY
31
n
43
GLY
31
A
VAL
32
n
44
VAL
32
A
GLU
33
n
45
GLU
33
A
LEU
34
n
46
LEU
34
A
ASP
35
n
47
ASP
35
A
VAL
36
n
48
VAL
36
A
ARG
37
n
49
ARG
37
A
LEU
38
n
50
LEU
38
A
SER
39
n
51
SER
39
A
LYS
40
n
52
LYS
40
A
ASP
41
n
53
ASP
41
A
GLY
42
n
54
GLY
42
A
LYS
43
n
55
LYS
43
A
VAL
44
n
56
VAL
44
A
VAL
45
n
57
VAL
45
A
VAL
46
n
58
VAL
46
A
SER
47
n
59
SER
47
A
HIS
48
n
60
HIS
48
A
ASP
49
n
61
ASP
49
A
GLU
50
n
62
GLU
50
A
ASP
51
n
63
ASP
51
A
LEU
52
n
64
LEU
52
A
LYS
53
n
65
LYS
53
A
ARG
54
n
66
ARG
54
A
LEU
55
n
67
LEU
55
A
PHE
56
n
68
PHE
56
A
GLY
57
n
69
GLY
57
A
LEU
58
n
70
LEU
58
A
ASP
59
n
71
ASP
59
A
VAL
60
n
72
VAL
60
A
LYS
61
n
73
LYS
61
A
ILE
62
n
74
ILE
62
A
ARG
63
n
75
ARG
63
A
ASP
64
n
76
ASP
64
A
ALA
65
n
77
ALA
65
A
THR
66
n
78
THR
66
A
VAL
67
n
79
VAL
67
A
SER
68
n
80
SER
68
A
GLU
69
n
81
GLU
69
A
LEU
70
n
82
LEU
70
A
LYS
71
n
83
LYS
71
A
GLU
72
n
84
GLU
72
A
LEU
73
n
85
LEU
73
A
THR
74
n
86
THR
74
A
ASP
75
n
87
ASP
75
A
GLY
76
n
88
GLY
76
A
LYS
77
n
89
LYS
77
A
ILE
78
n
90
ILE
78
A
THR
79
n
91
THR
79
A
THR
80
n
92
THR
80
A
LEU
81
n
93
LEU
81
A
LYS
82
n
94
LYS
82
A
GLU
83
n
95
GLU
83
A
VAL
84
n
96
VAL
84
A
PHE
85
n
97
PHE
85
A
GLU
86
n
98
GLU
86
A
ASN
87
n
99
ASN
87
A
VAL
88
n
100
VAL
88
A
SER
89
n
101
SER
89
A
ASP
90
n
102
ASP
90
A
ASP
91
n
103
ASP
91
A
LYS
92
n
104
LYS
92
A
ILE
93
n
105
ILE
93
A
ILE
94
n
106
ILE
94
A
ASN
95
n
107
ASN
95
A
ILE
96
n
108
ILE
96
A
GLU
97
n
109
GLU
97
A
ILE
98
n
110
ILE
98
A
LYS
99
n
111
LYS
99
A
GLU
100
n
112
GLU
100
A
ARG
101
n
113
ARG
101
A
GLU
102
n
114
GLU
102
A
ALA
103
n
115
ALA
103
A
ALA
104
n
116
ALA
104
A
ASP
105
n
117
ASP
105
A
ALA
106
n
118
ALA
106
A
VAL
107
n
119
VAL
107
A
LEU
108
n
120
LEU
108
A
GLU
109
n
121
GLU
109
A
ILE
110
n
122
ILE
110
A
SER
111
n
123
SER
111
A
LYS
112
n
124
LYS
112
A
LYS
113
n
125
LYS
113
A
ARG
114
n
126
ARG
114
A
LYS
115
n
127
LYS
115
A
ASN
116
n
128
ASN
116
A
LEU
117
n
129
LEU
117
A
ILE
118
n
130
ILE
118
A
PHE
119
n
131
PHE
119
A
SER
120
n
132
SER
120
A
SER
121
n
133
SER
121
A
PHE
122
n
134
PHE
122
A
ASP
123
n
135
ASP
123
A
LEU
124
n
136
LEU
124
A
ASP
125
n
137
ASP
125
A
LEU
126
n
138
LEU
126
A
LEU
127
n
139
LEU
127
A
ASP
128
n
140
ASP
128
A
GLU
129
n
141
GLU
129
A
LYS
130
n
142
LYS
130
A
PHE
131
n
143
PHE
131
A
LYS
132
n
144
LYS
132
A
GLY
133
n
145
GLY
133
A
THR
134
n
146
THR
134
A
LYS
135
n
147
LYS
135
A
TYR
136
n
148
TYR
136
A
GLY
137
n
149
GLY
137
A
TYR
138
n
150
TYR
138
A
LEU
139
n
151
LEU
139
A
ILE
140
n
152
ILE
140
A
ASP
141
n
153
ASP
141
A
GLU
142
n
154
GLU
142
A
GLU
143
n
155
GLU
143
A
ASN
144
n
156
ASN
144
A
TYR
145
n
157
TYR
145
A
GLY
146
n
158
GLY
146
A
SER
147
n
159
SER
147
A
ILE
148
n
160
ILE
148
A
GLU
149
n
161
GLU
149
A
ASN
150
n
162
ASN
150
A
PHE
151
n
163
PHE
151
A
VAL
152
n
164
VAL
152
A
GLU
153
n
165
GLU
153
A
ARG
154
n
166
ARG
154
A
VAL
155
n
167
VAL
155
A
GLU
156
n
168
GLU
156
A
LYS
157
n
169
LYS
157
A
GLU
158
n
170
GLU
158
A
ARG
159
n
171
ARG
159
A
PRO
160
n
172
PRO
160
A
TYR
161
n
173
TYR
161
A
SER
162
n
174
SER
162
A
LEU
163
n
175
LEU
163
A
HIS
164
n
176
HIS
164
A
VAL
165
n
177
VAL
165
A
PRO
166
n
178
PRO
166
A
TYR
167
n
179
TYR
167
A
GLN
168
n
180
GLN
168
A
ALA
169
n
181
ALA
169
A
PHE
170
n
182
PHE
170
A
GLU
171
n
183
GLU
171
A
LEU
172
n
184
LEU
172
A
GLU
173
n
185
GLU
173
A
TYR
174
n
186
TYR
174
A
ALA
175
n
187
ALA
175
A
VAL
176
n
188
VAL
176
A
GLU
177
n
189
GLU
177
A
VAL
178
n
190
VAL
178
A
LEU
179
n
191
LEU
179
A
ARG
180
n
192
ARG
180
A
SER
181
n
193
SER
181
A
PHE
182
n
194
PHE
182
A
ARG
183
n
195
ARG
183
A
LYS
184
n
196
LYS
184
A
LYS
185
n
197
LYS
185
A
GLY
186
n
198
GLY
186
A
ILE
187
n
199
ILE
187
A
VAL
188
n
200
VAL
188
A
ILE
189
n
201
ILE
189
A
PHE
190
n
202
PHE
190
A
VAL
191
n
203
VAL
191
A
TRP
192
n
204
TRP
192
A
THR
193
n
205
THR
193
A
LEU
194
n
206
LEU
194
A
ASN
195
n
207
ASN
195
A
ASP
196
n
208
ASP
196
A
PRO
197
n
209
PRO
197
A
GLU
198
n
210
GLU
198
A
ILE
199
n
211
ILE
199
A
TYR
200
n
212
TYR
200
A
ARG
201
n
213
ARG
201
A
LYS
202
n
214
LYS
202
A
ILE
203
n
215
ILE
203
A
ARG
204
n
216
ARG
204
A
ARG
205
n
217
ARG
205
A
GLU
206
n
218
GLU
206
A
ILE
207
n
219
ILE
207
A
ASP
208
n
220
ASP
208
A
GLY
209
n
221
GLY
209
A
VAL
210
n
222
VAL
210
A
ILE
211
n
223
ILE
211
A
THR
212
n
224
THR
212
A
ASP
213
n
225
ASP
213
A
GLU
214
n
226
GLU
214
A
VAL
215
n
227
VAL
215
A
GLU
216
n
228
GLU
216
A
LEU
217
n
229
LEU
217
A
PHE
218
n
230
PHE
218
A
VAL
219
n
231
VAL
219
A
LYS
220
n
232
LYS
220
A
LEU
221
n
233
LEU
221
A
ARG
222
n
234
ARG
222
A
0.8771
0.1355
-0.1374
0.5342
0.2144
1.2711
-0.0123
0.0176
0.0003
-0.0051
-0.0029
0.0649
-0.0301
-0.0980
0.0152
0.0002
0.0026
0.0081
-0.0243
0.0158
0.0241
refined
20.0943
8.3707
2.9538
X-RAY DIFFRACTION
A
-3
A
9
A
222
A
234
X-RAY DIFFRACTION
1
A
602
B
A
602
B
X-RAY DIFFRACTION
1
A
603
C
A
958
C
X-RAY DIFFRACTION
1
author_defined_assembly
1
monomeric
A
SER
111
A
O
SER
123
1_555
A
NA
602
B
NA
NA
1_555
A
ARG
114
A
O
ARG
126
1_555
89.2
A
SER
111
A
O
SER
123
1_555
A
NA
602
B
NA
NA
1_555
A
ASP
125
A
OD2
ASP
137
3_545
175.8
A
ARG
114
A
O
ARG
126
1_555
A
NA
602
B
NA
NA
1_555
A
ASP
125
A
OD2
ASP
137
3_545
90.2
A
SER
111
A
O
SER
123
1_555
A
NA
602
B
NA
NA
1_555
A
HOH
655
C
O
HOH
3_545
96.8
A
ARG
114
A
O
ARG
126
1_555
A
NA
602
B
NA
NA
1_555
A
HOH
655
C
O
HOH
3_545
136.4
A
ASP
125
A
OD2
ASP
137
3_545
A
NA
602
B
NA
NA
1_555
A
HOH
655
C
O
HOH
3_545
86.5
A
SER
111
A
O
SER
123
1_555
A
NA
602
B
NA
NA
1_555
A
HOH
656
C
O
HOH
1_555
84.7
A
ARG
114
A
O
ARG
126
1_555
A
NA
602
B
NA
NA
1_555
A
HOH
656
C
O
HOH
1_555
132.6
A
ASP
125
A
OD2
ASP
137
3_545
A
NA
602
B
NA
NA
1_555
A
HOH
656
C
O
HOH
1_555
92.7
A
HOH
655
C
O
HOH
3_545
A
NA
602
B
NA
NA
1_555
A
HOH
656
C
O
HOH
1_555
91.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
45
A
N
VAL
57
A
O
ARG
37
A
O
ARG
49
A
N
GLY
31
A
N
GLY
43
A
O
VAL
3
A
O
VAL
15
A
O
ILE
2
A
O
ILE
14
A
N
VAL
210
A
N
VAL
222
A
N
GLY
209
A
N
GLY
221
A
O
ILE
189
A
O
ILE
201
A
N
PHE
190
A
N
PHE
202
A
O
LEU
163
A
O
LEU
175
A
N
SER
162
A
N
SER
174
A
O
TYR
136
A
O
TYR
148
A
N
GLY
137
A
N
GLY
149
A
O
PHE
119
A
O
PHE
131
A
N
ILE
118
A
N
ILE
130
A
O
ILE
94
A
O
ILE
106
A
N
ASN
95
A
N
ASN
107
A
O
VAL
32
A
O
VAL
44
A
O
LEU
52
A
O
LEU
64
A
N
LEU
58
A
N
LEU
70
1
A
CG
HIS
-1
A
CG
HIS
11
1
Y
1
A
ND1
HIS
-1
A
ND1
HIS
11
1
Y
1
A
CD2
HIS
-1
A
CD2
HIS
11
1
Y
1
A
CE1
HIS
-1
A
CE1
HIS
11
1
Y
1
A
NE2
HIS
-1
A
NE2
HIS
11
1
Y
1
A
CD1
ILE
110
A
CD1
ILE
122
1
Y
1
A
CG
GLU
142
A
CG
GLU
154
1
Y
1
A
CD
GLU
142
A
CD
GLU
154
1
Y
1
A
OE1
GLU
142
A
OE1
GLU
154
1
Y
1
A
OE2
GLU
142
A
OE2
GLU
154
1
Y
1
A
CD
GLU
143
A
CD
GLU
155
1
Y
1
A
OE1
GLU
143
A
OE1
GLU
155
1
Y
1
A
OE2
GLU
143
A
OE2
GLU
155
1
Y
1
A
CE
LYS
184
A
CE
LYS
196
1
Y
1
A
NZ
LYS
184
A
NZ
LYS
196
1
Y
1
A
CE
LYS
202
A
CE
LYS
214
1
Y
1
A
NZ
LYS
202
A
NZ
LYS
214
1
Y
1
A
CG
ARG
205
A
CG
ARG
217
1
Y
1
A
CD
ARG
205
A
CD
ARG
217
1
Y
1
A
NE
ARG
205
A
NE
ARG
217
1
Y
1
A
CZ
ARG
205
A
CZ
ARG
217
1
Y
1
A
NH1
ARG
205
A
NH1
ARG
217
1
Y
1
A
NH2
ARG
205
A
NH2
ARG
217
1
Y
1
A
MET
-11
A
MET
1
1
Y
1
A
GLY
-10
A
GLY
2
1
Y
1
A
SER
-9
A
SER
3
1
Y
1
A
ASP
-8
A
ASP
4
1
Y
1
A
LYS
-7
A
LYS
5
1
Y
1
A
ILE
-6
A
ILE
6
1
Y
1
A
HIS
-5
A
HIS
7
1
Y
1
A
HIS
-4
A
HIS
8
1
Y
1
A
A
O
O
HOH
HOH
911
913
1.81
1
A
A
OE1
O
GLU
HOH
149
895
1.82
1
A
A
O
O
HOH
HOH
667
888
1.86
1
A
A
O
O
HOH
HOH
799
907
1.98
1
A
A
O
O
HOH
HOH
955
1024
2.09
1
A
A
O
O
HOH
HOH
702
847
2.11
1
A
A
O
O
HOH
HOH
679
693
2.12
1
A
A
O
O
HOH
HOH
679
891
2.12
1
A
A
O
O
HOH
HOH
681
888
2.14
1
A
A
O
O
HOH
HOH
860
947
2.14
1
A
A
ND2
O
ASN
HOH
150
894
2.14
1
A
A
OD2
O
ASP
HOH
35
847
2.18
1
6.38
0.90
118.30
124.68
A
A
A
CB
CG
OD2
ASP
ASP
ASP
91
91
91
B
B
B
N
1
5.23
0.50
120.30
125.53
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
154
154
154
N
1
-4.85
0.50
120.30
115.45
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
154
154
154
N
1
A
A
O
O
HOH
HOH
714
954
1.81
1_555
1_556
1
A
A
O
O
HOH
HOH
809
954
2.16
1_555
1_556
1
A
A
O
O
HOH
HOH
791
855
2.17
1_555
3_555
1
A
ASP
75
37.23
48.73
13.32
0.00000
0.00000
0.00000
0.06000
0.00000
-0.06000
0.974
0.956
WEAK CONTINUOUS DIFFERENCE DENSITY AT THE N-TERMINUS WAS MODELLED AS HIS-TAG RESIDUES, BUT AT HALF OCCUPANCY.THE CONTINUED PRESENCE OF SPURIOUS DIFFERENCE DENSITY IMPLIES THAT THIS STILL IS AN INCOMPLETE DESCRIPTION OF THE N-TERMINUS. XFIT/CCP4/TLS WAS ALSO USED IN REFINEMENT.
0.18
0.139
0.141
1.60
48.18
1926
36027
5.100
97.8
2.507
0.041
RANDOM
LIKELY RESIDUAL
1
Isotropic
THROUGHOUT
0.000
MAD
0.067
0.075
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.60
48.18
422
2254
1
0
1831
0.012
0.021
1909
0.002
0.020
1796
1.411
1.969
2571
0.882
3.000
4177
6.079
5.000
225
34.050
24.124
97
10.828
15.000
376
19.046
15.000
15
0.091
0.200
296
0.006
0.020
2072
0.001
0.020
390
0.211
0.200
383
0.238
0.200
2207
0.080
0.200
1177
0.230
0.200
248
0.115
0.200
3
0.306
0.200
15
0.336
0.200
48
0.244
0.200
45
1.790
4.000
1129
3.054
6.000
1841
4.411
10.000
780
6.905
13.000
730
0.218
0.165
1.64
137
2413
20
1.600
50.000
1O1Z
38012
0.05
1
62.0100
6.710
100.0
1.60
1.66
10.060
0.196
1
3.51
95.3
data reduction
DENZO
data scaling
SCALEPACK
model building
RESOLVE
phasing
SOLVE
model building
ARP/wARP
refinement
REFMAC
5.1.955
phasing
RESOLVE
Crystal structure of glycerophosphodiester phosphodiesterase (GDPD) (TM1621) from Thermotoga maritima at 1.60 A resolution
1
N
N
2
N
N
3
N
N
A
THR
17
A
THR
29
HELX_P
A
ALA
27
A
ALA
39
1
1
11
A
LYS
53
A
LYS
65
HELX_P
A
GLY
57
A
GLY
69
1
2
5
A
ARG
63
A
ARG
75
HELX_P
A
ALA
65
A
ALA
77
5
3
3
A
THR
66
A
THR
78
HELX_P
A
THR
74
A
THR
86
1
4
9
A
THR
80
A
THR
92
HELX_P
A
VAL
88
A
VAL
100
1
5
9
A
GLU
100
A
GLU
112
HELX_P
A
GLU
102
A
GLU
114
5
6
3
A
ALA
103
A
ALA
115
HELX_P
A
LYS
112
A
LYS
124
1
7
10
A
ASP
123
A
ASP
135
HELX_P
A
PHE
131
A
PHE
143
1
8
9
A
SER
147
A
SER
159
HELX_P
A
ARG
159
A
ARG
171
1
9
13
A
GLN
168
A
GLN
180
HELX_P
A
GLU
171
A
GLU
183
5
10
4
A
LEU
172
A
LEU
184
HELX_P
A
LYS
185
A
LYS
197
1
11
14
A
ASP
196
A
ASP
208
HELX_P
A
ARG
204
A
ARG
216
1
12
9
A
ARG
205
A
ARG
217
HELX_P
A
ILE
207
A
ILE
219
5
13
3
A
GLU
214
A
GLU
226
HELX_P
A
LEU
221
A
LEU
233
1
14
8
metalc
2.366
A
SER
111
A
O
SER
123
1_555
A
NA
602
B
NA
NA
1_555
metalc
2.218
A
ARG
114
A
O
ARG
126
1_555
A
NA
602
B
NA
NA
1_555
metalc
2.306
A
ASP
125
A
OD2
ASP
137
3_545
A
NA
602
B
NA
NA
1_555
metalc
2.434
A
NA
602
B
NA
NA
1_555
A
HOH
655
C
O
HOH
3_545
metalc
2.381
A
NA
602
B
NA
NA
1_555
A
HOH
656
C
O
HOH
1_555
HYDROLASE
TM1621, GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE (GDPD), STRUCTURAL GENOMICS, JCSG, PSI, Protein Structure Initiative, Joint Center for Structural Genomics, HYDROLASE
A
TRP
192
A
TRP
204
1
A
THR
193
A
THR
205
-23.47
Q9X1V6_THEMA
UNP
1
1
Q9X1V6
MIVLGHRGYSAKYLENTLEAFMKAIEAGANGVELDVRLSKDGKVVVSHDEDLKRLFGLDVKIRDATVSELKELTDGKITT
LKEVFENVSDDKIINIEIKEREAADAVLEISKKRKNLIFSSFDLDLLDEKFKGTKYGYLIDEENYGSIENFVERVEKERP
YSLHVPYQAFELEYAVEVLRSFRKKGIVIFVWTLNDPEIYRKIRREIDGVITDEVELFVKLR
2
222
1O1Z
2
222
Q9X1V6
A
1
14
234
1
expression tag
GLY
-10
1O1Z
A
Q9X1V6
UNP
2
1
expression tag
SER
-9
1O1Z
A
Q9X1V6
UNP
3
1
expression tag
ASP
-8
1O1Z
A
Q9X1V6
UNP
4
1
expression tag
LYS
-7
1O1Z
A
Q9X1V6
UNP
5
1
expression tag
ILE
-6
1O1Z
A
Q9X1V6
UNP
6
1
expression tag
HIS
-5
1O1Z
A
Q9X1V6
UNP
7
1
expression tag
HIS
-4
1O1Z
A
Q9X1V6
UNP
8
1
expression tag
HIS
-3
1O1Z
A
Q9X1V6
UNP
9
1
expression tag
HIS
-2
1O1Z
A
Q9X1V6
UNP
10
1
expression tag
HIS
-1
1O1Z
A
Q9X1V6
UNP
11
1
expression tag
HIS
0
1O1Z
A
Q9X1V6
UNP
12
1
expression tag
VAL
1
1O1Z
A
Q9X1V6
UNP
13
10
2
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
A
VAL
44
A
VAL
56
A
VAL
46
A
VAL
58
A
GLY
31
A
GLY
43
A
LEU
38
A
LEU
50
A
ILE
2
A
ILE
14
A
HIS
6
A
HIS
18
A
GLY
209
A
GLY
221
A
THR
212
A
THR
224
A
VAL
188
A
VAL
200
A
TRP
192
A
TRP
204
A
SER
162
A
SER
174
A
PRO
166
A
PRO
178
A
TYR
136
A
TYR
148
A
LEU
139
A
LEU
151
A
LEU
117
A
LEU
129
A
SER
121
A
SER
133
A
ILE
93
A
ILE
105
A
ILE
98
A
ILE
110
A
GLY
31
A
GLY
43
A
LEU
38
A
LEU
50
A
ASP
51
A
ASP
63
A
LEU
52
A
LEU
64
A
LEU
58
A
LEU
70
A
LYS
61
A
LYS
73
BINDING SITE FOR RESIDUE NA A 602
A
NA
602
Software
6
A
SER
111
A
SER
123
6
1_555
A
LYS
112
A
LYS
124
6
1_555
A
ARG
114
A
ARG
126
6
1_555
A
ASP
125
A
ASP
137
6
3_545
A
HOH
655
C
HOH
6
3_545
A
HOH
656
C
HOH
6
1_555
18
P 21 21 2