0.013004
0.007508
0.000000
0.000000
0.015016
0.000000
0.000000
0.000000
0.006962
0.00000
0.00000
0.00000
Chen, S.
Vojtechovsky, J.
Parkinson, G.N.
Ebright, R.H.
Berman, H.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
76.900
76.900
143.640
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C10 H12 N5 O6 P
329.206
ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
CYCLIC AMP; CAMP
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
R
P
N
75
N
O
N
76
N
O
N
77
N
O
N
78
N
C
N
79
R
C
N
80
N
O
N
81
S
C
N
82
N
O
N
83
R
C
N
84
N
O
N
85
R
C
Y
86
N
N
Y
87
N
C
Y
88
N
N
Y
89
N
C
Y
90
N
C
N
91
N
N
Y
92
N
N
Y
93
N
C
Y
94
N
N
Y
95
N
C
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
R
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
S
N
114
N
O
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
O
N
123
N
P
N
124
N
O
N
125
N
O
N
126
N
O
N
127
N
C
N
128
R
C
N
129
N
O
N
130
S
C
N
131
N
O
N
132
N
C
N
133
R
C
Y
134
N
N
Y
135
N
C
Y
136
N
N
Y
137
N
C
Y
138
N
C
N
139
N
N
Y
140
N
N
Y
141
N
C
Y
142
N
N
Y
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
N
170
N
N
N
171
N
C
N
172
N
O
N
173
N
N
N
174
N
C
N
175
N
N
N
176
N
C
N
177
N
C
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
O
N
193
N
P
N
194
N
O
N
195
N
O
N
196
N
O
N
197
N
C
N
198
R
C
N
199
N
O
N
200
S
C
N
201
N
O
N
202
N
C
N
203
R
C
Y
204
N
N
Y
205
N
C
Y
206
N
N
Y
207
N
C
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
N
N
213
N
N
Y
214
N
C
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
O
N
230
N
P
N
231
N
O
N
232
N
O
N
233
N
O
N
234
N
C
N
235
R
C
N
236
N
O
N
237
S
C
N
238
N
O
N
239
N
C
N
240
R
C
N
241
N
N
N
242
N
C
N
243
N
O
N
244
N
N
N
245
N
C
N
246
N
O
N
247
N
C
N
248
N
C
N
249
N
C
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
N
N
266
S
C
N
267
N
C
N
268
N
O
N
269
N
C
N
270
N
C
N
271
N
C
N
272
N
O
N
273
N
N
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
N
N
286
S
C
N
287
N
C
N
288
N
O
N
289
N
C
N
290
N
C
N
291
N
C
N
292
N
O
N
293
N
O
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
N
C
N
306
N
C
N
307
N
O
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
N
N
315
S
C
N
316
N
C
N
317
N
O
N
318
N
C
Y
319
N
C
Y
320
N
N
Y
321
N
C
Y
322
N
C
Y
323
N
N
N
324
N
O
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
N
N
339
S
C
N
340
N
C
N
341
N
O
N
342
S
C
N
343
N
C
N
344
N
C
N
345
N
C
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
N
N
361
S
C
N
362
N
C
N
363
N
O
N
364
N
C
N
365
N
C
N
366
N
C
N
367
N
C
N
368
N
O
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
N
N
383
S
C
N
384
N
C
N
385
N
O
N
386
N
C
N
387
N
C
N
388
N
C
N
389
N
C
N
390
N
N
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
N
N
408
S
C
N
409
N
C
N
410
N
O
N
411
N
C
N
412
N
C
N
413
N
S
N
414
N
C
N
415
N
O
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
N
N
428
S
C
N
429
N
C
N
430
N
O
N
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
C
Y
436
N
C
Y
437
N
C
N
438
N
O
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
N
N
451
S
C
N
452
N
C
N
453
N
O
N
454
N
C
N
455
N
C
N
456
N
C
N
457
N
O
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
N
N
468
S
C
N
469
N
C
N
470
N
O
N
471
N
C
N
472
N
O
N
473
N
O
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
N
N
482
S
C
N
483
N
C
N
484
N
O
N
485
R
C
N
486
N
O
N
487
N
C
N
488
N
O
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
N
N
499
S
C
N
500
N
C
N
501
N
O
N
502
N
C
Y
503
N
C
Y
504
N
C
Y
505
N
C
Y
506
N
N
Y
507
N
C
Y
508
N
C
Y
509
N
C
Y
510
N
C
Y
511
N
C
N
512
N
O
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
N
N
526
S
C
N
527
N
C
N
528
N
O
N
529
N
C
Y
530
N
C
Y
531
N
C
Y
532
N
C
Y
533
N
C
Y
534
N
C
Y
535
N
C
N
536
N
O
N
537
N
O
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
N
N
550
S
C
N
551
N
C
N
552
N
O
N
553
N
C
N
554
N
C
N
555
N
C
N
556
N
O
N
557
N
H
N
558
N
H
N
559
N
H
N
560
N
H
N
561
N
H
N
562
N
H
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
Y
92
N
sing
Y
93
N
sing
Y
94
N
doub
N
95
N
sing
Y
96
N
sing
Y
97
N
sing
Y
98
N
doub
N
99
N
sing
Y
100
N
doub
N
101
N
sing
N
102
N
sing
Y
103
N
sing
Y
104
N
doub
N
105
N
sing
Y
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
Y
143
N
sing
Y
144
N
sing
Y
145
N
doub
N
146
N
sing
Y
147
N
sing
Y
148
N
sing
Y
149
N
doub
N
150
N
sing
Y
151
N
doub
N
152
N
sing
N
153
N
sing
Y
154
N
sing
Y
155
N
doub
N
156
N
sing
Y
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
doub
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
Y
216
N
sing
Y
217
N
sing
Y
218
N
doub
N
219
N
sing
Y
220
N
sing
N
221
N
sing
Y
222
N
doub
N
223
N
doub
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
doub
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
doub
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
doub
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
doub
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
Y
326
N
sing
Y
327
N
doub
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
Y
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
doub
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
doub
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
Y
434
N
doub
Y
435
N
sing
Y
436
N
sing
N
437
N
sing
Y
438
N
doub
N
439
N
sing
Y
440
N
doub
N
441
N
sing
Y
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
doub
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
doub
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
doub
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
doub
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
Y
503
N
doub
Y
504
N
sing
Y
505
N
sing
N
506
N
sing
Y
507
N
doub
Y
508
N
sing
Y
509
N
sing
N
510
N
sing
Y
511
N
sing
Y
512
N
doub
N
513
N
sing
Y
514
N
doub
N
515
N
sing
Y
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
doub
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
Y
531
N
doub
Y
532
N
sing
Y
533
N
sing
N
534
N
sing
Y
535
N
doub
N
536
N
sing
Y
537
N
doub
N
538
N
sing
Y
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
doub
N
551
N
sing
N
552
N
sing
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
314
63
74
10.1006/jmbi.2001.5089
11724532
Indirect Readout of DNA Sequence at the Primary-kink Site in the CAP-DNA Complex: DNA Binding Specificity Based on Energetics of DNA Kinking
2001
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
314
75
82
10.1006/jmbi.2001.5090
Indirect Readout of DNA Sequence at the Primary-kink Site in the CAP-DNA Complex: Alteration of DNA Binding Specificity Through Alteration of DNA Kinking
2001
10.2210/pdb1o3r/pdb
pdb_00001o3r
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
108.0
1
IMAGE PLATE
1997-09-01
RIGAKU RAXIS
SINGLE WAVELENGTH
M
x-ray
1
1.100
1.0
X25
NSLS
1.100
SYNCHROTRON
NSLS BEAMLINE X25
3390.262
5'-D(*AP*AP*AP*AP*AP*TP*GP*CP*GP*AP*T)-3'
1
syn
polymer
4549.969
5'-D(*CP*TP*AP*GP*AP*TP*CP*GP*CP*AP*TP*TP*TP*TP*T)-3'
1
syn
polymer
22558.072
CATABOLITE GENE ACTIVATOR PROTEIN
1
man
polymer
329.206
ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
2
syn
non-polymer
18.015
water
54
nat
water
CAP, CAMP RECEPTOR PROTEIN, CAMP-REGULATORY PROTEIN
no
no
(DA)(DA)(DA)(DA)(DA)(DT)(DG)(DC)(DG)(DA)(DT)
AAAAATGCGAT
B
polydeoxyribonucleotide
no
no
(DC)(DT)(DA)(DG)(DA)(DT)(DC)(DG)(DC)(DA)(DT)(DT)(DT)(DT)(DT)
CTAGATCGCATTTTT
C
polydeoxyribonucleotide
no
no
DPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVR
AKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKI
TRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYG
DPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVR
AKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKI
TRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
562
Escherichia coli
562
Escherichia coli
1
3.97
68.8
VAPOR DIFFUSION, HANGING DROP
6.23
PEG 8000, 1,4-DIOXANE, MES, NACL, MGCL2, CAMP, pH 6.23,
VAPOR DIFFUSION, HANGING DROP at 293K
293
1,4-DIOXANE
1
MES
1
NACL
1
MGCL2
1
CAMP
1
PEG 8000
1
PEG 8000
2
-4.974
1
20
B
-2
C
-2
-2.498
B_DA-2:DT-2_C
1
-7.972
-0.022
-0.474
0.192
9.087
1
20
B
-1
C
-1
2.493
B_DA-1:DT-1_C
2
-8.233
0.012
0.030
-0.089
15.735
1
20
B
1
C
1
-7.766
B_DA1:DT1_C
3
-20.816
0.193
0.429
0.154
3.423
1
20
B
2
C
2
-2.217
B_DA2:DT2_C
4
-17.558
-0.086
-0.106
0.074
-4.630
1
20
B
3
C
3
-9.511
B_DA3:DT3_C
5
-14.097
0.404
0.638
-0.036
-4.152
1
20
B
4
C
4
7.996
B_DT4:DA4_C
6
-31.257
-0.132
-0.951
-0.209
-17.221
1
19
B
5
C
5
1.350
B_DG5:DC5_C
7
-0.315
-0.128
-0.988
-0.167
20.397
1
19
B
6
C
6
5.682
B_DC6:DG6_C
8
-13.947
0.068
-0.991
-0.031
-28.384
1
19
B
7
C
7
-8.660
B_DG7:DC7_C
9
1.431
0.000
-0.945
-0.161
-6.539
1
20
B
8
C
8
2.919
B_DA8:DT8_C
10
-10.627
0.057
0.296
-0.083
-9.652
1
20
B
9
C
9
3.404
B_DT9:DA9_C
11
-7.223
-0.021
1.119
-0.301
2.884
36.509
B
B
-2
-1
-5.986
C
C
-2
-1
2.900
-3.744
0.360
0.106
BB_DA-2DA-1:DT-1DT-2_CC
1
1.006
-1.609
36.310
0.628
-0.452
3.229
39.995
B
B
-1
1
-9.812
C
C
-1
1
3.214
-6.682
-0.327
-0.375
BB_DA-1DA1:DT1DT-1_CC
2
0.444
-0.652
39.453
0.212
0.529
3.114
37.778
B
B
1
2
11.374
C
C
1
2
3.301
7.313
0.381
-0.800
BB_DA1DA2:DT2DT1_CC
3
3.259
-5.070
36.950
-2.171
-0.171
3.318
35.894
B
B
2
3
-6.253
C
C
2
3
3.272
-3.826
-0.306
-0.594
BB_DA2DA3:DT3DT2_CC
4
-6.630
10.836
35.095
-0.406
-0.471
3.205
38.427
B
B
3
4
5.644
C
C
3
4
3.275
3.618
0.630
-0.572
BB_DA3DT4:DA4DT3_CC
5
14.913
-23.261
35.336
-1.337
0.967
3.931
36.718
B
B
4
5
12.091
C
C
4
5
3.689
7.544
0.124
1.827
BB_DT4DG5:DC5DA4_CC
6
-4.888
7.833
35.638
1.681
-0.987
2.285
29.199
B
B
5
6
13.238
C
C
5
6
2.204
6.618
-0.439
0.587
BB_DG5DC6:DG6DC5_CC
7
-0.385
0.770
28.453
0.164
0.812
4.152
41.501
B
B
6
7
77.308
C
C
6
7
5.022
40.331
-0.074
3.091
BB_DC6DG7:DC7DG6_CC
8
-3.607
6.914
9.290
-5.856
-0.810
2.354
35.876
B
B
7
8
-4.194
C
C
7
8
2.694
-2.490
-0.211
2.116
BB_DG7DA8:DT8DC7_CC
9
-16.480
27.757
31.883
3.728
-1.596
3.326
32.969
B
B
8
9
-0.532
C
C
8
9
3.344
-0.301
0.019
-1.161
BB_DA8DT9:DA9DT8_CC
10
-4.243
7.496
32.701
-1.993
-0.772
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-04-08
1
1
2008-04-26
1
2
2011-07-13
1
3
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
2003-04-08
SPRSDE
RCSB
Y
RCSB
2003-03-18
REL
REL
CMP
ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
HOH
water
CMP
1
4
CMP
CMP
1
A
CMP
2
4
CMP
CMP
2
A
HOH
115
5
HOH
HOH
115
B
HOH
126
5
HOH
HOH
126
B
HOH
130
5
HOH
HOH
130
B
HOH
133
5
HOH
HOH
133
B
HOH
151
5
HOH
HOH
151
B
HOH
118
5
HOH
HOH
118
C
HOH
122
5
HOH
HOH
122
C
HOH
135
5
HOH
HOH
135
C
HOH
136
5
HOH
HOH
136
C
HOH
141
5
HOH
HOH
141
C
HOH
145
5
HOH
HOH
145
C
HOH
153
5
HOH
HOH
153
C
HOH
100
5
HOH
HOH
208
A
HOH
101
5
HOH
HOH
209
A
HOH
102
5
HOH
HOH
210
A
HOH
103
5
HOH
HOH
211
A
HOH
104
5
HOH
HOH
212
A
HOH
105
5
HOH
HOH
213
A
HOH
106
5
HOH
HOH
214
A
HOH
107
5
HOH
HOH
215
A
HOH
108
5
HOH
HOH
216
A
HOH
109
5
HOH
HOH
217
A
HOH
110
5
HOH
HOH
218
A
HOH
111
5
HOH
HOH
219
A
HOH
112
5
HOH
HOH
220
A
HOH
113
5
HOH
HOH
221
A
HOH
114
5
HOH
HOH
222
A
HOH
116
5
HOH
HOH
223
A
HOH
117
5
HOH
HOH
224
A
HOH
119
5
HOH
HOH
225
A
HOH
120
5
HOH
HOH
226
A
HOH
121
5
HOH
HOH
227
A
HOH
123
5
HOH
HOH
228
A
HOH
124
5
HOH
HOH
229
A
HOH
125
5
HOH
HOH
230
A
HOH
127
5
HOH
HOH
231
A
HOH
128
5
HOH
HOH
232
A
HOH
129
5
HOH
HOH
233
A
HOH
131
5
HOH
HOH
234
A
HOH
132
5
HOH
HOH
235
A
HOH
134
5
HOH
HOH
236
A
HOH
137
5
HOH
HOH
237
A
HOH
138
5
HOH
HOH
238
A
HOH
139
5
HOH
HOH
239
A
HOH
140
5
HOH
HOH
240
A
HOH
142
5
HOH
HOH
241
A
HOH
143
5
HOH
HOH
242
A
HOH
144
5
HOH
HOH
243
A
HOH
146
5
HOH
HOH
244
A
HOH
147
5
HOH
HOH
245
A
HOH
148
5
HOH
HOH
246
A
HOH
149
5
HOH
HOH
247
A
HOH
150
5
HOH
HOH
248
A
HOH
152
5
HOH
HOH
249
A
A
-2
n
1
DA
-2
B
A
-1
n
2
DA
-1
B
A
1
n
3
DA
1
B
A
2
n
4
DA
2
B
A
3
n
5
DA
3
B
T
4
n
6
DT
4
B
G
5
n
7
DG
5
B
C
6
n
8
DC
6
B
G
7
n
9
DG
7
B
A
8
n
10
DA
8
B
T
9
n
11
DT
9
B
C
13
n
1
DC
13
C
T
12
n
2
DT
12
C
A
11
n
3
DA
11
C
G
10
n
4
DG
10
C
A
9
n
5
DA
9
C
T
8
n
6
DT
8
C
C
7
n
7
DC
7
C
G
6
n
8
DG
6
C
C
5
n
9
DC
5
C
A
4
n
10
DA
4
C
T
3
n
11
DT
3
C
T
2
n
12
DT
2
C
T
1
n
13
DT
1
C
T
-1
n
14
DT
-1
C
T
-2
n
15
DT
-2
C
ASP
8
n
1
ASP
8
A
PRO
9
n
2
PRO
9
A
THR
10
n
3
THR
10
A
LEU
11
n
4
LEU
11
A
GLU
12
n
5
GLU
12
A
TRP
13
n
6
TRP
13
A
PHE
14
n
7
PHE
14
A
LEU
15
n
8
LEU
15
A
SER
16
n
9
SER
16
A
HIS
17
n
10
HIS
17
A
CYS
18
n
11
CYS
18
A
HIS
19
n
12
HIS
19
A
ILE
20
n
13
ILE
20
A
HIS
21
n
14
HIS
21
A
LYS
22
n
15
LYS
22
A
TYR
23
n
16
TYR
23
A
PRO
24
n
17
PRO
24
A
SER
25
n
18
SER
25
A
LYS
26
n
19
LYS
26
A
SER
27
n
20
SER
27
A
THR
28
n
21
THR
28
A
LEU
29
n
22
LEU
29
A
ILE
30
n
23
ILE
30
A
HIS
31
n
24
HIS
31
A
GLN
32
n
25
GLN
32
A
GLY
33
n
26
GLY
33
A
GLU
34
n
27
GLU
34
A
LYS
35
n
28
LYS
35
A
ALA
36
n
29
ALA
36
A
GLU
37
n
30
GLU
37
A
THR
38
n
31
THR
38
A
LEU
39
n
32
LEU
39
A
TYR
40
n
33
TYR
40
A
TYR
41
n
34
TYR
41
A
ILE
42
n
35
ILE
42
A
VAL
43
n
36
VAL
43
A
LYS
44
n
37
LYS
44
A
GLY
45
n
38
GLY
45
A
SER
46
n
39
SER
46
A
VAL
47
n
40
VAL
47
A
ALA
48
n
41
ALA
48
A
VAL
49
n
42
VAL
49
A
LEU
50
n
43
LEU
50
A
ILE
51
n
44
ILE
51
A
LYS
52
n
45
LYS
52
A
ASP
53
n
46
ASP
53
A
GLU
54
n
47
GLU
54
A
GLU
55
n
48
GLU
55
A
GLY
56
n
49
GLY
56
A
LYS
57
n
50
LYS
57
A
GLU
58
n
51
GLU
58
A
MET
59
n
52
MET
59
A
ILE
60
n
53
ILE
60
A
LEU
61
n
54
LEU
61
A
SER
62
n
55
SER
62
A
TYR
63
n
56
TYR
63
A
LEU
64
n
57
LEU
64
A
ASN
65
n
58
ASN
65
A
GLN
66
n
59
GLN
66
A
GLY
67
n
60
GLY
67
A
ASP
68
n
61
ASP
68
A
PHE
69
n
62
PHE
69
A
ILE
70
n
63
ILE
70
A
GLY
71
n
64
GLY
71
A
GLU
72
n
65
GLU
72
A
LEU
73
n
66
LEU
73
A
GLY
74
n
67
GLY
74
A
LEU
75
n
68
LEU
75
A
PHE
76
n
69
PHE
76
A
GLU
77
n
70
GLU
77
A
GLU
78
n
71
GLU
78
A
GLY
79
n
72
GLY
79
A
GLN
80
n
73
GLN
80
A
GLU
81
n
74
GLU
81
A
ARG
82
n
75
ARG
82
A
SER
83
n
76
SER
83
A
ALA
84
n
77
ALA
84
A
TRP
85
n
78
TRP
85
A
VAL
86
n
79
VAL
86
A
ARG
87
n
80
ARG
87
A
ALA
88
n
81
ALA
88
A
LYS
89
n
82
LYS
89
A
THR
90
n
83
THR
90
A
ALA
91
n
84
ALA
91
A
CYS
92
n
85
CYS
92
A
GLU
93
n
86
GLU
93
A
VAL
94
n
87
VAL
94
A
ALA
95
n
88
ALA
95
A
GLU
96
n
89
GLU
96
A
ILE
97
n
90
ILE
97
A
SER
98
n
91
SER
98
A
TYR
99
n
92
TYR
99
A
LYS
100
n
93
LYS
100
A
LYS
101
n
94
LYS
101
A
PHE
102
n
95
PHE
102
A
ARG
103
n
96
ARG
103
A
GLN
104
n
97
GLN
104
A
LEU
105
n
98
LEU
105
A
ILE
106
n
99
ILE
106
A
GLN
107
n
100
GLN
107
A
VAL
108
n
101
VAL
108
A
ASN
109
n
102
ASN
109
A
PRO
110
n
103
PRO
110
A
ASP
111
n
104
ASP
111
A
ILE
112
n
105
ILE
112
A
LEU
113
n
106
LEU
113
A
MET
114
n
107
MET
114
A
ARG
115
n
108
ARG
115
A
LEU
116
n
109
LEU
116
A
SER
117
n
110
SER
117
A
ALA
118
n
111
ALA
118
A
GLN
119
n
112
GLN
119
A
MET
120
n
113
MET
120
A
ALA
121
n
114
ALA
121
A
ARG
122
n
115
ARG
122
A
ARG
123
n
116
ARG
123
A
LEU
124
n
117
LEU
124
A
GLN
125
n
118
GLN
125
A
VAL
126
n
119
VAL
126
A
THR
127
n
120
THR
127
A
SER
128
n
121
SER
128
A
GLU
129
n
122
GLU
129
A
LYS
130
n
123
LYS
130
A
VAL
131
n
124
VAL
131
A
GLY
132
n
125
GLY
132
A
ASN
133
n
126
ASN
133
A
LEU
134
n
127
LEU
134
A
ALA
135
n
128
ALA
135
A
PHE
136
n
129
PHE
136
A
LEU
137
n
130
LEU
137
A
ASP
138
n
131
ASP
138
A
VAL
139
n
132
VAL
139
A
THR
140
n
133
THR
140
A
GLY
141
n
134
GLY
141
A
ARG
142
n
135
ARG
142
A
ILE
143
n
136
ILE
143
A
ALA
144
n
137
ALA
144
A
GLN
145
n
138
GLN
145
A
THR
146
n
139
THR
146
A
LEU
147
n
140
LEU
147
A
LEU
148
n
141
LEU
148
A
ASN
149
n
142
ASN
149
A
LEU
150
n
143
LEU
150
A
ALA
151
n
144
ALA
151
A
LYS
152
n
145
LYS
152
A
GLN
153
n
146
GLN
153
A
PRO
154
n
147
PRO
154
A
ASP
155
n
148
ASP
155
A
ALA
156
n
149
ALA
156
A
MET
157
n
150
MET
157
A
THR
158
n
151
THR
158
A
HIS
159
n
152
HIS
159
A
PRO
160
n
153
PRO
160
A
ASP
161
n
154
ASP
161
A
GLY
162
n
155
GLY
162
A
MET
163
n
156
MET
163
A
GLN
164
n
157
GLN
164
A
ILE
165
n
158
ILE
165
A
LYS
166
n
159
LYS
166
A
ILE
167
n
160
ILE
167
A
THR
168
n
161
THR
168
A
ARG
169
n
162
ARG
169
A
GLN
170
n
163
GLN
170
A
GLU
171
n
164
GLU
171
A
ILE
172
n
165
ILE
172
A
GLY
173
n
166
GLY
173
A
GLN
174
n
167
GLN
174
A
ILE
175
n
168
ILE
175
A
VAL
176
n
169
VAL
176
A
GLY
177
n
170
GLY
177
A
CYS
178
n
171
CYS
178
A
SER
179
n
172
SER
179
A
ARG
180
n
173
ARG
180
A
GLU
181
n
174
GLU
181
A
THR
182
n
175
THR
182
A
VAL
183
n
176
VAL
183
A
GLY
184
n
177
GLY
184
A
ARG
185
n
178
ARG
185
A
ILE
186
n
179
ILE
186
A
LEU
187
n
180
LEU
187
A
LYS
188
n
181
LYS
188
A
MET
189
n
182
MET
189
A
LEU
190
n
183
LEU
190
A
GLU
191
n
184
GLU
191
A
ASP
192
n
185
ASP
192
A
GLN
193
n
186
GLN
193
A
ASN
194
n
187
ASN
194
A
LEU
195
n
188
LEU
195
A
ILE
196
n
189
ILE
196
A
SER
197
n
190
SER
197
A
ALA
198
n
191
ALA
198
A
HIS
199
n
192
HIS
199
A
GLY
200
n
193
GLY
200
A
LYS
201
n
194
LYS
201
A
THR
202
n
195
THR
202
A
ILE
203
n
196
ILE
203
A
VAL
204
n
197
VAL
204
A
VAL
205
n
198
VAL
205
A
TYR
206
n
199
TYR
206
A
GLY
207
n
200
GLY
207
A
author_defined_assembly
6
hexameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
5_555
x-y,-y,-z+2/3
crystal symmetry operation
0.0000000000
0.0000000000
95.7600000000
A
N
HIS
21
C
N
HIS
14
A
O
VAL
94
C
O
VAL
87
A
O
ILE
97
C
O
ILE
90
A
N
LEU
39
C
N
LEU
32
A
N
TYR
40
C
N
TYR
33
A
O
ILE
70
C
O
ILE
63
A
N
ILE
30
C
N
ILE
23
A
O
VAL
86
C
O
VAL
79
A
O
ARG
87
C
O
ARG
80
A
N
ALA
48
C
N
ALA
41
A
N
VAL
49
C
N
VAL
42
A
O
LEU
61
C
O
LEU
54
A
N
MET
157
C
N
MET
150
A
O
GLN
164
C
O
GLN
157
A
N
MET
163
C
N
MET
156
A
O
VAL
205
C
O
VAL
198
A
O
THR
202
C
O
THR
195
A
N
HIS
199
C
N
HIS
192
1
A
THR
10
-59.65
-2.72
1
A
SER
25
-49.37
162.77
1
A
ILE
167
-177.45
149.73
PROTEIN_REP.PARAM
PROTEIN.TOP
DNA-RNA_REP.PARAM
DNA-RNA.TOP
CMP.PARAM
CMP.TOP
WATER_REP.PARAM
WATER.TOP
54.70
9.92
17.17
0.00
9.92
0.00
-19.84
0.283
0.009
0.233
0.2331
3.00
20.00
953
9519
10.000
92.5
RANDOM
2839655.76
0.00
1
RESTRAINED
THROUGHOUT
0.000
ENGH & HUBER
FLAT MODEL
70.85
0.399
0.45
0.33
5.00
0.32
0.13
3.00
20.00
54
2206
44
527
1581
0.011
1.50
22.20
1.06
2.750
1.500
4.310
2.000
4.090
2.000
5.930
2.500
0.356
0.030
0.247
3.19
144
1480
6
8.90
96.40
32.75
3.000
20.000
1O3R
9519
2.000
0.057
1
10.8000
5.300
92.5
0.306
3.00
3.16
5.30
97.1
data reduction
DENZO
data scaling
SCALA
phasing
AMoRE
refinement
CNS
0.5
data scaling
CCP4
(SCALA)
PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
5
N
N
5
N
N
A
ASP
8
C
ASP
1
HELX_P
A
SER
16
C
SER
9
1
1
9
A
GLU
72
C
GLU
65
HELX_P
A
PHE
76
C
PHE
69
5
2
5
A
TYR
99
C
TYR
92
HELX_P
A
ASN
109
C
ASN
102
1
3
11
A
ASN
109
C
ASN
102
HELX_P
A
LEU
137
C
LEU
130
1
4
29
A
ASP
138
C
ASP
131
HELX_P
A
GLN
153
C
GLN
146
1
5
16
A
THR
168
C
THR
161
HELX_P
A
GLY
177
C
GLY
170
1
6
10
A
SER
179
C
SER
172
HELX_P
A
GLN
193
C
GLN
186
1
7
15
hydrog
WATSON-CRICK
B
DA
-2
A
N1
DA
1
1_555
C
DT
-2
B
N3
DT
15
1_555
hydrog
WATSON-CRICK
B
DA
-2
A
N6
DA
1
1_555
C
DT
-2
B
O4
DT
15
1_555
hydrog
WATSON-CRICK
B
DA
-1
A
N1
DA
2
1_555
C
DT
-1
B
N3
DT
14
1_555
hydrog
WATSON-CRICK
B
DA
-1
A
N6
DA
2
1_555
C
DT
-1
B
O4
DT
14
1_555
hydrog
WATSON-CRICK
B
DA
1
A
N1
DA
3
1_555
C
DT
1
B
N3
DT
13
1_555
hydrog
WATSON-CRICK
B
DA
1
A
N6
DA
3
1_555
C
DT
1
B
O4
DT
13
1_555
hydrog
WATSON-CRICK
B
DA
2
A
N1
DA
4
1_555
C
DT
2
B
N3
DT
12
1_555
hydrog
WATSON-CRICK
B
DA
2
A
N6
DA
4
1_555
C
DT
2
B
O4
DT
12
1_555
hydrog
WATSON-CRICK
B
DA
3
A
N1
DA
5
1_555
C
DT
3
B
N3
DT
11
1_555
hydrog
WATSON-CRICK
B
DA
3
A
N6
DA
5
1_555
C
DT
3
B
O4
DT
11
1_555
hydrog
WATSON-CRICK
B
DT
4
A
N3
DT
6
1_555
C
DA
4
B
N1
DA
10
1_555
hydrog
WATSON-CRICK
B
DT
4
A
O4
DT
6
1_555
C
DA
4
B
N6
DA
10
1_555
hydrog
WATSON-CRICK
B
DG
5
A
N1
DG
7
1_555
C
DC
5
B
N3
DC
9
1_555
hydrog
WATSON-CRICK
B
DG
5
A
N2
DG
7
1_555
C
DC
5
B
O2
DC
9
1_555
hydrog
WATSON-CRICK
B
DG
5
A
O6
DG
7
1_555
C
DC
5
B
N4
DC
9
1_555
hydrog
WATSON-CRICK
B
DC
6
A
N3
DC
8
1_555
C
DG
6
B
N1
DG
8
1_555
hydrog
WATSON-CRICK
B
DC
6
A
N4
DC
8
1_555
C
DG
6
B
O6
DG
8
1_555
hydrog
WATSON-CRICK
B
DC
6
A
O2
DC
8
1_555
C
DG
6
B
N2
DG
8
1_555
hydrog
WATSON-CRICK
B
DG
7
A
N1
DG
9
1_555
C
DC
7
B
N3
DC
7
1_555
hydrog
WATSON-CRICK
B
DG
7
A
N2
DG
9
1_555
C
DC
7
B
O2
DC
7
1_555
hydrog
WATSON-CRICK
B
DG
7
A
O6
DG
9
1_555
C
DC
7
B
N4
DC
7
1_555
hydrog
WATSON-CRICK
B
DA
8
A
N1
DA
10
1_555
C
DT
8
B
N3
DT
6
1_555
hydrog
WATSON-CRICK
B
DA
8
A
N6
DA
10
1_555
C
DT
8
B
O4
DT
6
1_555
hydrog
WATSON-CRICK
B
DT
9
A
N3
DT
11
1_555
C
DA
9
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
B
DT
9
A
O4
DT
11
1_555
C
DA
9
B
N6
DA
5
1_555
GENE REGULATION/DNA
PROTEIN-DNA COMPLEX, CAP, CAP-DNA, CATABOLITE GENE ACTIVATOR PROTEIN, CAMP RECEPTOR PROTEIN, CRP, GENE REGULATION-DNA COMPLEX
CRP_ECOLI
UNP
3
9
P0ACJ8
DPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVR
AKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKI
TRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYG
1O3R
PDB
1
1O3R
1O3R
PDB
2
1O3R
9
208
1O3R
8
207
P0ACJ8
A
1
1
200
-2
9
1O3R
-2
9
1O3R
B
2
1
11
13
-2
1O3R
13
-2
1O3R
C
3
1
15
4
4
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
HIS
19
C
HIS
12
A
TYR
23
C
TYR
16
A
CYS
92
C
CYS
85
A
SER
98
C
SER
91
A
THR
38
C
THR
31
A
LYS
44
C
LYS
37
A
PHE
69
C
PHE
62
A
ILE
70
C
ILE
63
A
THR
28
C
THR
21
A
ILE
30
C
ILE
23
A
TRP
85
C
TRP
78
A
ALA
88
C
ALA
81
A
VAL
47
C
VAL
40
A
LYS
52
C
LYS
45
A
GLU
58
C
GLU
51
A
LEU
64
C
LEU
57
A
MET
157
C
MET
150
A
HIS
159
C
HIS
152
A
GLY
162
C
GLY
155
A
LYS
166
C
LYS
159
A
THR
202
C
THR
195
A
TYR
206
C
TYR
199
A
ILE
196
C
ILE
189
A
HIS
199
C
HIS
192
BINDING SITE FOR RESIDUE CMP A 1
A
CMP
1
Software
11
BINDING SITE FOR RESIDUE CMP A 2
A
CMP
2
Software
14
A
SER
62
C
SER
55
11
1_555
A
ILE
70
C
ILE
63
11
1_555
A
GLY
71
C
GLY
64
11
1_555
A
GLU
72
C
GLU
65
11
1_555
A
LEU
73
C
LEU
66
11
1_555
A
ARG
82
C
ARG
75
11
1_555
A
SER
83
C
SER
76
11
1_555
A
VAL
86
C
VAL
79
11
1_555
A
THR
127
C
THR
120
11
1_555
A
SER
128
C
SER
121
11
5_555
A
HOH
213
H
HOH
11
1_555
A
LYS
57
C
LYS
50
14
1_555
A
GLU
58
C
GLU
51
14
1_555
A
ALA
135
C
ALA
128
14
5_555
A
PHE
136
C
PHE
129
14
5_555
A
GLN
170
C
GLN
163
14
1_555
A
GLY
173
C
GLY
166
14
1_555
A
GLN
174
C
GLN
167
14
1_555
A
GLY
177
C
GLY
170
14
1_555
A
CYS
178
C
CYS
171
14
1_555
A
SER
179
C
SER
172
14
1_555
A
ARG
180
C
ARG
173
14
1_555
A
HOH
219
H
HOH
14
1_555
A
HOH
249
H
HOH
14
1_555
C
DA
9
B
DA
5
14
1_555
152
trigonal
P 31 2 1