0.007300
0.000000
0.000000
0.000000
0.006545
0.000000
0.000000
0.000000
0.013148
0.00000
0.00000
0.00000
Chen, S.
Vojtechovsky, J.
Parkinson, G.N.
Ebright, R.H.
Berman, H.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
136.990
152.800
76.060
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C10 H12 N5 O6 P
329.206
ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
CYCLIC AMP; CAMP
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
R
P
N
75
N
O
N
76
N
O
N
77
N
O
N
78
N
C
N
79
R
C
N
80
N
O
N
81
S
C
N
82
N
O
N
83
R
C
N
84
N
O
N
85
R
C
Y
86
N
N
Y
87
N
C
Y
88
N
N
Y
89
N
C
Y
90
N
C
N
91
N
N
Y
92
N
N
Y
93
N
C
Y
94
N
N
Y
95
N
C
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
R
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
S
N
114
N
O
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
O
N
123
N
P
N
124
N
O
N
125
N
O
N
126
N
O
N
127
N
C
N
128
R
C
N
129
N
O
N
130
S
C
N
131
N
O
N
132
N
C
N
133
R
C
Y
134
N
N
Y
135
N
C
Y
136
N
N
Y
137
N
C
Y
138
N
C
N
139
N
N
Y
140
N
N
Y
141
N
C
Y
142
N
N
Y
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
N
170
N
N
N
171
N
C
N
172
N
O
N
173
N
N
N
174
N
C
N
175
N
N
N
176
N
C
N
177
N
C
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
O
N
193
N
P
N
194
N
O
N
195
N
O
N
196
N
O
N
197
N
C
N
198
R
C
N
199
N
O
N
200
S
C
N
201
N
O
N
202
N
C
N
203
R
C
Y
204
N
N
Y
205
N
C
Y
206
N
N
Y
207
N
C
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
N
N
213
N
N
Y
214
N
C
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
O
N
230
N
P
N
231
N
O
N
232
N
O
N
233
N
O
N
234
N
C
N
235
R
C
N
236
N
O
N
237
S
C
N
238
N
O
N
239
N
C
N
240
R
C
N
241
N
N
N
242
N
C
N
243
N
O
N
244
N
N
N
245
N
C
N
246
N
O
N
247
N
C
N
248
N
C
N
249
N
C
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
N
N
266
S
C
N
267
N
C
N
268
N
O
N
269
N
C
N
270
N
C
N
271
N
C
N
272
N
O
N
273
N
N
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
N
N
286
S
C
N
287
N
C
N
288
N
O
N
289
N
C
N
290
N
C
N
291
N
C
N
292
N
O
N
293
N
O
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
N
C
N
306
N
C
N
307
N
O
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
N
N
315
S
C
N
316
N
C
N
317
N
O
N
318
N
C
Y
319
N
C
Y
320
N
N
Y
321
N
C
Y
322
N
C
Y
323
N
N
N
324
N
O
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
N
N
339
S
C
N
340
N
C
N
341
N
O
N
342
S
C
N
343
N
C
N
344
N
C
N
345
N
C
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
N
N
361
S
C
N
362
N
C
N
363
N
O
N
364
N
C
N
365
N
C
N
366
N
C
N
367
N
C
N
368
N
O
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
N
N
383
S
C
N
384
N
C
N
385
N
O
N
386
N
C
N
387
N
C
N
388
N
C
N
389
N
C
N
390
N
N
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
N
N
408
S
C
N
409
N
C
N
410
N
O
N
411
N
C
N
412
N
C
N
413
N
S
N
414
N
C
N
415
N
O
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
N
N
428
S
C
N
429
N
C
N
430
N
O
N
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
C
Y
436
N
C
Y
437
N
C
N
438
N
O
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
N
N
451
S
C
N
452
N
C
N
453
N
O
N
454
N
C
N
455
N
C
N
456
N
C
N
457
N
O
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
N
N
468
S
C
N
469
N
C
N
470
N
O
N
471
N
C
N
472
N
O
N
473
N
O
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
N
N
482
S
C
N
483
N
C
N
484
N
O
N
485
R
C
N
486
N
O
N
487
N
C
N
488
N
O
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
N
N
499
S
C
N
500
N
C
N
501
N
O
N
502
N
C
Y
503
N
C
Y
504
N
C
Y
505
N
C
Y
506
N
N
Y
507
N
C
Y
508
N
C
Y
509
N
C
Y
510
N
C
Y
511
N
C
N
512
N
O
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
N
N
526
S
C
N
527
N
C
N
528
N
O
N
529
N
C
Y
530
N
C
Y
531
N
C
Y
532
N
C
Y
533
N
C
Y
534
N
C
Y
535
N
C
N
536
N
O
N
537
N
O
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
N
N
550
S
C
N
551
N
C
N
552
N
O
N
553
N
C
N
554
N
C
N
555
N
C
N
556
N
O
N
557
N
H
N
558
N
H
N
559
N
H
N
560
N
H
N
561
N
H
N
562
N
H
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
Y
92
N
sing
Y
93
N
sing
Y
94
N
doub
N
95
N
sing
Y
96
N
sing
Y
97
N
sing
Y
98
N
doub
N
99
N
sing
Y
100
N
doub
N
101
N
sing
N
102
N
sing
Y
103
N
sing
Y
104
N
doub
N
105
N
sing
Y
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
Y
143
N
sing
Y
144
N
sing
Y
145
N
doub
N
146
N
sing
Y
147
N
sing
Y
148
N
sing
Y
149
N
doub
N
150
N
sing
Y
151
N
doub
N
152
N
sing
N
153
N
sing
Y
154
N
sing
Y
155
N
doub
N
156
N
sing
Y
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
doub
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
Y
216
N
sing
Y
217
N
sing
Y
218
N
doub
N
219
N
sing
Y
220
N
sing
N
221
N
sing
Y
222
N
doub
N
223
N
doub
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
doub
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
doub
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
doub
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
doub
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
Y
326
N
sing
Y
327
N
doub
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
Y
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
doub
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
doub
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
Y
434
N
doub
Y
435
N
sing
Y
436
N
sing
N
437
N
sing
Y
438
N
doub
N
439
N
sing
Y
440
N
doub
N
441
N
sing
Y
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
doub
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
doub
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
doub
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
doub
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
Y
503
N
doub
Y
504
N
sing
Y
505
N
sing
N
506
N
sing
Y
507
N
doub
Y
508
N
sing
Y
509
N
sing
N
510
N
sing
Y
511
N
sing
Y
512
N
doub
N
513
N
sing
Y
514
N
doub
N
515
N
sing
Y
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
doub
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
Y
531
N
doub
Y
532
N
sing
Y
533
N
sing
N
534
N
sing
Y
535
N
doub
N
536
N
sing
Y
537
N
doub
N
538
N
sing
Y
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
doub
N
551
N
sing
N
552
N
sing
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
314
63
74
10.1006/jmbi.2001.5089
11724532
Indirect Readout of DNA Sequence at the Primary-kink Site in the CAP-DNA Complex:
DNA Binding Specificity Based on Energetics of DNA Kinking
2001
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
314
75
82
10.1006/jmbi.2001.5090
Indirect Readout of DNA Sequence at the Primary-kink Site in the CAP-DNA Complex:
Alteration of DNA Binding Specificity Through Alteration of DNA Kinking
2001
10.2210/pdb1o3t/pdb
pdb_00001o3t
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
258.0
1
IMAGE PLATE
1993-09-01
FUJI
SINGLE WAVELENGTH
M
x-ray
1
0.908
1.0
F1
CHESS
0.908
SYNCHROTRON
CHESS BEAMLINE F1
4337.855
5'-D(*GP*CP*GP*AP*AP*AP*AP*AP*TP*GP*CP*GP*AP*T)-3'
2
syn
polymer
5168.357
5'-D(*CP*TP*AP*GP*AP*TP*CP*GP*CP*AP*TP*TP*TP*TP*TP*CP*G)-3'
2
syn
polymer
22558.072
CATABOLITE GENE ACTIVATOR PROTEIN
2
man
polymer
329.206
ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
2
syn
non-polymer
18.015
water
56
nat
water
CAP, CAMP RECEPTOR PROTEIN, CAMP-REGULATORY PROTEIN
no
no
(DG)(DC)(DG)(DA)(DA)(DA)(DA)(DA)(DT)(DG)(DC)(DG)(DA)(DT)
GCGAAAAATGCGAT
C,F
polydeoxyribonucleotide
no
no
(DC)(DT)(DA)(DG)(DA)(DT)(DC)(DG)(DC)(DA)(DT)(DT)(DT)(DT)(DT)(DC)(DG)
CTAGATCGCATTTTTCG
D,E
polydeoxyribonucleotide
no
no
DPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVR
AKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKI
TRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYG
DPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVR
AKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKI
TRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYG
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
562
Escherichia coli
562
Escherichia coli
4
3.17
60.84
VAPOR DIFFUSION, HANGING DROP
5.5
PEG 3350, MES, NACL, MGCL2, CACL2, CAMP, NAN3, DITHIOTHREITOL, SPERMINE,
N-OCTYL-B-D-GLUCOPYRANOSIDE, pH 5.5, VAPOR DIFFUSION, HANGING DROP
at 293K
293
N-OCTYL-B-D-GLUCOPYRANOSIDE
1
MES
1
NACL
1
MGCL2
1
CAMP
1
CACL2
1
NAN3
1
DITHIOTHREITOL
1
SPERMINE
1
PEG 3350
1
PEG 3350
2
-14.549
1
19
C
-4
D
-4
-3.192
C_DC-4:DG-4_D
1
10.912
0.154
0.719
-0.033
6.011
1
19
C
-3
D
-3
2.585
C_DG-3:DC-3_D
2
5.531
-0.471
0.216
-0.077
-6.562
1
20
C
-2
D
-2
-1.963
C_DA-2:DT-2_D
3
-34.043
0.007
-1.111
-0.107
7.510
1
20
C
-1
D
-1
1.829
C_DA-1:DT-1_D
4
-15.631
0.050
0.007
-0.077
2.718
1
20
C
1
D
1
1.872
C_DA1:DT1_D
5
-23.861
-0.098
-0.140
-0.059
-1.939
1
20
C
2
D
2
-1.770
C_DA2:DT2_D
6
-13.599
-0.040
0.349
-0.271
2.283
1
20
C
3
D
3
6.250
C_DA3:DT3_D
7
2.021
-0.092
1.826
-0.840
-11.968
1
20
C
4
D
4
1.378
C_DT4:DA4_D
8
11.553
-0.171
1.891
-0.502
-8.589
1
19
C
5
D
5
0.198
C_DG5:DC5_D
9
12.618
-0.180
-0.786
0.090
4.067
1
19
C
6
D
6
1.936
C_DC6:DG6_D
10
-9.372
0.004
-1.353
-0.391
-25.415
1
19
C
7
D
7
-1.106
C_DG7:DC7_D
11
-11.678
-0.101
-0.945
-0.057
-2.536
1
20
C
8
D
8
-4.087
C_DA8:DT8_D
12
-10.548
0.288
-0.653
-0.002
-3.786
1
20
C
9
D
9
-6.847
C_DT9:DA9_D
13
-4.288
-0.091
0.419
0.060
0.025
1
19
E
10
D
10
-5.694
E_DC10:DG10_D
14
-1.545
-0.338
-0.091
-0.198
9.631
1
20
E
11
D
11
-1.042
E_DT11:DA11_D
15
-19.405
0.181
-1.185
-0.153
-5.243
1
20
E
12
D
12
-2.526
E_DA12:DT12_D
16
-2.440
0.182
-0.180
0.027
15.287
1
19
E
13
D
13
4.325
E_DG13:DC13_D
17
-10.809
-0.037
-0.605
-0.160
29.216
1
20
E
14
F
14
1.913
E_DA14:DT14_F
18
-17.224
0.154
0.732
0.019
12.049
1
20
E
15
F
15
-8.292
E_DT15:DA15_F
19
-12.795
-0.258
0.473
-0.092
28.417
1
19
E
16
F
16
-12.333
E_DC16:DG16_F
20
15.594
-0.459
-0.735
-0.181
-13.822
1
19
E
17
F
17
-0.044
E_DG17:DC17_F
21
14.865
0.217
0.055
0.007
8.568
1
19
E
18
F
18
-1.068
E_DC18:DG18_F
22
1.556
0.254
-0.708
-0.068
7.926
1
20
E
19
F
19
0.180
E_DA19:DT19_F
23
-0.792
0.118
0.442
-0.070
-2.686
1
20
E
20
F
20
0.116
E_DT20:DA20_F
24
-9.931
0.071
0.613
-0.143
2.902
1
20
E
21
F
21
-0.468
E_DT21:DA21_F
25
10.462
-0.074
-0.286
-0.290
-2.191
1
20
E
22
F
22
0.759
E_DT22:DA22_F
26
-0.440
-0.124
-0.435
0.048
-16.137
1
20
E
23
F
23
-1.761
E_DT23:DA23_F
27
-16.855
-0.299
-0.247
-0.024
-14.323
1
20
E
24
F
24
-8.097
E_DT24:DA24_F
28
-18.077
-0.215
-0.227
0.127
-19.189
1
19
E
25
F
25
0.348
E_DC25:DG25_F
29
-3.914
0.202
0.578
-0.130
20.596
1
19
E
26
F
26
-8.012
E_DG26:DC26_F
30
-3.354
0.158
0.941
-0.010
2.876
41.302
C
C
-4
-3
-22.657
D
D
-4
-3
3.131
-15.587
0.742
0.273
CC_DC-4DG-3:DC-3DG-4_DD
1
4.423
-6.430
38.120
1.993
-0.595
3.753
35.876
C
C
-3
-2
12.788
D
D
-3
-2
4.260
7.645
-1.116
1.269
CC_DG-3DA-2:DT-2DC-3_DD
2
13.054
-21.833
32.626
0.650
4.220
2.643
38.186
C
C
-2
-1
-9.968
D
D
-2
-1
2.963
-6.440
0.780
0.238
CC_DA-2DA-1:DT-1DT-2_DD
3
-8.590
13.296
36.700
1.075
-2.141
3.044
39.262
C
C
-1
1
4.352
D
D
-1
1
3.058
2.918
0.184
-0.143
CC_DA-1DA1:DT1DT-1_DD
4
3.692
-5.506
38.990
-0.538
0.138
2.887
34.439
C
C
1
2
4.758
D
D
1
2
2.989
2.811
0.038
-1.010
CC_DA1DA2:DT2DT1_DD
5
-2.826
4.783
34.214
-2.101
-0.460
2.516
41.353
C
C
2
3
-11.076
D
D
2
3
2.876
-7.642
0.576
-0.113
CC_DA2DA3:DT3DT2_DD
6
-13.659
19.795
38.397
0.544
-2.072
4.270
34.638
C
C
3
4
-21.801
D
D
3
4
3.840
-12.695
-0.301
-1.907
CC_DA3DT4:DA4DT3_DD
7
-0.340
0.583
32.292
-0.690
0.438
3.187
48.731
C
C
4
5
-12.468
D
D
4
5
3.431
-9.830
0.493
0.065
CC_DT4DG5:DC5DA4_DD
8
23.557
-29.879
41.863
0.907
1.386
2.523
25.868
C
C
5
6
38.090
D
D
5
6
2.983
15.807
-0.495
0.427
CC_DG5DC6:DG6DC5_DD
9
3.781
-9.112
20.192
-3.216
2.104
4.509
44.955
C
C
6
7
65.716
D
D
6
7
4.812
40.707
0.570
2.645
CC_DC6DG7:DC7DG6_DD
10
3.827
-6.179
19.101
-4.166
-0.028
2.397
35.095
C
C
7
8
-3.565
D
D
7
8
2.565
-2.113
-0.502
3.288
CC_DG7DA8:DT8DC7_DD
11
-11.246
18.977
33.233
5.700
-0.482
3.020
27.881
C
C
8
9
12.733
D
D
8
9
3.535
5.991
0.410
-0.681
CC_DA8DT9:DA9DT8_DD
12
-8.540
18.150
25.892
-2.902
-2.973
3.150
36.337
C
E
9
10
0.377
D
D
9
10
3.028
0.234
0.973
-0.790
CE_DT9DC10:DG10DA9_DD
13
6.831
-11.015
35.710
-1.298
-0.651
2.741
33.768
E
E
10
11
4.936
D
D
10
11
2.958
2.786
-0.009
0.460
EE_DC10DT11:DA11DG10_DD
14
13.631
-24.147
30.844
0.380
2.033
3.931
44.943
E
E
11
12
11.795
D
D
11
12
3.773
8.931
-0.051
1.366
EE_DT11DA12:DT12DA11_DD
15
-6.738
8.899
43.598
0.821
-0.663
3.116
31.534
E
E
12
13
6.157
D
D
12
13
3.068
3.302
0.659
-0.019
EE_DA12DG13:DC13DT12_DD
16
8.306
-15.485
30.272
-0.629
0.279
2.860
37.031
E
E
13
14
0.219
D
F
13
14
2.882
0.138
-0.128
0.017
EE_DG13DA14:DT14DC13_FD
17
-6.645
10.515
36.450
0.011
-0.588
3.208
31.224
E
E
14
15
24.996
F
F
14
15
3.853
13.056
-1.113
-0.631
EE_DA14DT15:DA15DT14_FF
18
1.284
-2.459
28.397
-3.983
2.345
2.619
36.824
E
E
15
16
-14.919
F
F
15
16
3.132
-9.161
1.076
2.460
EE_DT15DC16:DG16DA15_FF
19
12.106
-19.714
33.649
5.042
-0.186
4.273
49.468
E
E
16
17
61.421
F
F
16
17
5.398
42.989
0.285
1.830
EE_DC16DG17:DC17DG16_FF
20
-5.264
7.520
24.500
-4.373
-1.144
2.113
28.162
E
E
17
18
34.760
F
F
17
18
2.782
15.831
-0.100
-0.214
EE_DG17DC18:DG18DC17_FF
21
5.500
-12.075
22.714
-3.524
1.277
3.458
42.894
E
E
18
19
0.442
F
F
18
19
3.415
0.319
-0.645
0.932
EE_DC18DA19:DT19DG18_FF
22
-13.383
18.584
40.845
1.241
-0.554
3.891
32.512
E
E
19
20
-5.589
F
F
19
20
3.779
-3.123
-0.224
-1.301
EE_DA19DT20:DA20DT19_FF
23
-1.648
2.949
32.325
-1.681
0.062
3.303
38.645
E
E
20
21
-24.612
F
F
20
21
3.324
-15.839
0.109
-0.630
EE_DT20DT21:DA21DA20_FF
24
1.266
-1.967
35.342
1.120
0.000
3.270
38.201
E
E
21
22
4.436
F
F
21
22
3.302
2.897
0.552
-0.813
EE_DT21DT22:DA22DA21_FF
25
3.550
-5.436
37.936
-1.610
-0.393
3.395
34.495
E
E
22
23
-0.803
F
F
22
23
3.410
-0.476
-0.255
-0.149
EE_DT22DT23:DA23DA22_FF
26
1.722
-2.905
34.450
-0.175
0.709
3.036
40.845
E
E
23
24
-2.792
F
F
23
24
3.016
-1.948
-0.503
-0.339
EE_DT23DT24:DA24DA23_FF
27
-0.604
0.866
40.796
-0.288
0.659
3.486
40.508
E
E
24
25
-2.337
F
F
24
25
3.655
-1.612
0.519
1.374
EE_DT24DC25:DG25DA24_FF
28
-6.116
8.868
40.031
2.182
-1.500
2.401
34.760
E
E
25
26
-14.102
F
F
25
26
2.453
-8.335
-0.819
0.210
EE_DC25DG26:DC26DG25_FF
29
-3.310
5.600
33.618
1.313
0.990
software
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
1
0
2003-04-08
1
1
2008-04-26
1
2
2011-07-13
1
3
2017-10-04
1
4
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
2003-04-08
SPRSDE
RCSB
Y
RCSB
2003-03-18
REL
REL
CMP
ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
HOH
water
CMP
762
4
CMP
CMP
762
A
CMP
761
4
CMP
CMP
761
B
HOH
116
5
HOH
HOH
116
C
HOH
139
5
HOH
HOH
139
C
HOH
140
5
HOH
HOH
140
C
HOH
152
5
HOH
HOH
152
C
HOH
105
5
HOH
HOH
105
D
HOH
118
5
HOH
HOH
118
D
HOH
123
5
HOH
HOH
123
D
HOH
129
5
HOH
HOH
129
D
HOH
134
5
HOH
HOH
134
D
HOH
145
5
HOH
HOH
145
D
HOH
155
5
HOH
HOH
155
D
HOH
111
5
HOH
HOH
111
E
HOH
114
5
HOH
HOH
114
E
HOH
133
5
HOH
HOH
133
E
HOH
136
5
HOH
HOH
136
E
HOH
153
5
HOH
HOH
153
E
HOH
117
5
HOH
HOH
117
F
HOH
137
5
HOH
HOH
137
F
HOH
101
5
HOH
HOH
763
A
HOH
102
5
HOH
HOH
764
A
HOH
103
5
HOH
HOH
765
A
HOH
106
5
HOH
HOH
766
A
HOH
107
5
HOH
HOH
767
A
HOH
108
5
HOH
HOH
768
A
HOH
115
5
HOH
HOH
769
A
HOH
121
5
HOH
HOH
770
A
HOH
124
5
HOH
HOH
771
A
HOH
125
5
HOH
HOH
772
A
HOH
126
5
HOH
HOH
773
A
HOH
130
5
HOH
HOH
774
A
HOH
131
5
HOH
HOH
775
A
HOH
135
5
HOH
HOH
776
A
HOH
142
5
HOH
HOH
777
A
HOH
146
5
HOH
HOH
778
A
HOH
147
5
HOH
HOH
779
A
HOH
148
5
HOH
HOH
780
A
HOH
149
5
HOH
HOH
781
A
HOH
100
5
HOH
HOH
762
B
HOH
104
5
HOH
HOH
763
B
HOH
109
5
HOH
HOH
764
B
HOH
110
5
HOH
HOH
765
B
HOH
112
5
HOH
HOH
766
B
HOH
113
5
HOH
HOH
767
B
HOH
119
5
HOH
HOH
768
B
HOH
120
5
HOH
HOH
769
B
HOH
122
5
HOH
HOH
770
B
HOH
127
5
HOH
HOH
771
B
HOH
128
5
HOH
HOH
772
B
HOH
132
5
HOH
HOH
773
B
HOH
138
5
HOH
HOH
774
B
HOH
141
5
HOH
HOH
775
B
HOH
143
5
HOH
HOH
776
B
HOH
144
5
HOH
HOH
777
B
HOH
150
5
HOH
HOH
778
B
HOH
151
5
HOH
HOH
779
B
HOH
154
5
HOH
HOH
780
B
G
-5
n
1
DG
-5
C
C
-4
n
2
DC
-4
C
G
-3
n
3
DG
-3
C
A
-2
n
4
DA
-2
C
A
-1
n
5
DA
-1
C
A
1
n
6
DA
1
C
A
2
n
7
DA
2
C
A
3
n
8
DA
3
C
T
4
n
9
DT
4
C
G
5
n
10
DG
5
C
C
6
n
11
DC
6
C
G
7
n
12
DG
7
C
A
8
n
13
DA
8
C
T
9
n
14
DT
9
C
C
13
n
1
DC
13
D
T
12
n
2
DT
12
D
A
11
n
3
DA
11
D
G
10
n
4
DG
10
D
A
9
n
5
DA
9
D
T
8
n
6
DT
8
D
C
7
n
7
DC
7
D
G
6
n
8
DG
6
D
C
5
n
9
DC
5
D
A
4
n
10
DA
4
D
T
3
n
11
DT
3
D
T
2
n
12
DT
2
D
T
1
n
13
DT
1
D
T
-1
n
14
DT
-1
D
T
-2
n
15
DT
-2
D
C
-3
n
16
DC
-3
D
G
-4
n
17
DG
-4
D
C
10
n
1
DC
10
E
T
11
n
2
DT
11
E
A
12
n
3
DA
12
E
G
13
n
4
DG
13
E
A
14
n
5
DA
14
E
T
15
n
6
DT
15
E
C
16
n
7
DC
16
E
G
17
n
8
DG
17
E
C
18
n
9
DC
18
E
A
19
n
10
DA
19
E
T
20
n
11
DT
20
E
T
21
n
12
DT
21
E
T
22
n
13
DT
22
E
T
23
n
14
DT
23
E
T
24
n
15
DT
24
E
C
25
n
16
DC
25
E
G
26
n
17
DG
26
E
G
27
n
1
DG
27
F
C
26
n
2
DC
26
F
G
25
n
3
DG
25
F
A
24
n
4
DA
24
F
A
23
n
5
DA
23
F
A
22
n
6
DA
22
F
A
21
n
7
DA
21
F
A
20
n
8
DA
20
F
T
19
n
9
DT
19
F
G
18
n
10
DG
18
F
C
17
n
11
DC
17
F
G
16
n
12
DG
16
F
A
15
n
13
DA
15
F
T
14
n
14
DT
14
F
n
1
8
A
PRO
9
n
2
PRO
9
A
THR
10
n
3
THR
10
A
LEU
11
n
4
LEU
11
A
GLU
12
n
5
GLU
12
A
TRP
13
n
6
TRP
13
A
PHE
14
n
7
PHE
14
A
LEU
15
n
8
LEU
15
A
SER
16
n
9
SER
16
A
HIS
17
n
10
HIS
17
A
CYS
18
n
11
CYS
18
A
HIS
19
n
12
HIS
19
A
ILE
20
n
13
ILE
20
A
HIS
21
n
14
HIS
21
A
LYS
22
n
15
LYS
22
A
TYR
23
n
16
TYR
23
A
PRO
24
n
17
PRO
24
A
SER
25
n
18
SER
25
A
LYS
26
n
19
LYS
26
A
SER
27
n
20
SER
27
A
THR
28
n
21
THR
28
A
LEU
29
n
22
LEU
29
A
ILE
30
n
23
ILE
30
A
HIS
31
n
24
HIS
31
A
GLN
32
n
25
GLN
32
A
GLY
33
n
26
GLY
33
A
GLU
34
n
27
GLU
34
A
LYS
35
n
28
LYS
35
A
ALA
36
n
29
ALA
36
A
GLU
37
n
30
GLU
37
A
THR
38
n
31
THR
38
A
LEU
39
n
32
LEU
39
A
TYR
40
n
33
TYR
40
A
TYR
41
n
34
TYR
41
A
ILE
42
n
35
ILE
42
A
VAL
43
n
36
VAL
43
A
LYS
44
n
37
LYS
44
A
GLY
45
n
38
GLY
45
A
SER
46
n
39
SER
46
A
VAL
47
n
40
VAL
47
A
ALA
48
n
41
ALA
48
A
VAL
49
n
42
VAL
49
A
LEU
50
n
43
LEU
50
A
ILE
51
n
44
ILE
51
A
LYS
52
n
45
LYS
52
A
ASP
53
n
46
ASP
53
A
GLU
54
n
47
GLU
54
A
GLU
55
n
48
GLU
55
A
GLY
56
n
49
GLY
56
A
LYS
57
n
50
LYS
57
A
GLU
58
n
51
GLU
58
A
MET
59
n
52
MET
59
A
ILE
60
n
53
ILE
60
A
LEU
61
n
54
LEU
61
A
SER
62
n
55
SER
62
A
TYR
63
n
56
TYR
63
A
LEU
64
n
57
LEU
64
A
ASN
65
n
58
ASN
65
A
GLN
66
n
59
GLN
66
A
GLY
67
n
60
GLY
67
A
ASP
68
n
61
ASP
68
A
PHE
69
n
62
PHE
69
A
ILE
70
n
63
ILE
70
A
GLY
71
n
64
GLY
71
A
GLU
72
n
65
GLU
72
A
LEU
73
n
66
LEU
73
A
GLY
74
n
67
GLY
74
A
LEU
75
n
68
LEU
75
A
PHE
76
n
69
PHE
76
A
GLU
77
n
70
GLU
77
A
GLU
78
n
71
GLU
78
A
GLY
79
n
72
GLY
79
A
GLN
80
n
73
GLN
80
A
GLU
81
n
74
GLU
81
A
ARG
82
n
75
ARG
82
A
SER
83
n
76
SER
83
A
ALA
84
n
77
ALA
84
A
TRP
85
n
78
TRP
85
A
VAL
86
n
79
VAL
86
A
ARG
87
n
80
ARG
87
A
ALA
88
n
81
ALA
88
A
LYS
89
n
82
LYS
89
A
THR
90
n
83
THR
90
A
ALA
91
n
84
ALA
91
A
CYS
92
n
85
CYS
92
A
GLU
93
n
86
GLU
93
A
VAL
94
n
87
VAL
94
A
ALA
95
n
88
ALA
95
A
GLU
96
n
89
GLU
96
A
ILE
97
n
90
ILE
97
A
SER
98
n
91
SER
98
A
TYR
99
n
92
TYR
99
A
LYS
100
n
93
LYS
100
A
LYS
101
n
94
LYS
101
A
PHE
102
n
95
PHE
102
A
ARG
103
n
96
ARG
103
A
GLN
104
n
97
GLN
104
A
LEU
105
n
98
LEU
105
A
ILE
106
n
99
ILE
106
A
GLN
107
n
100
GLN
107
A
VAL
108
n
101
VAL
108
A
ASN
109
n
102
ASN
109
A
PRO
110
n
103
PRO
110
A
ASP
111
n
104
ASP
111
A
ILE
112
n
105
ILE
112
A
LEU
113
n
106
LEU
113
A
MET
114
n
107
MET
114
A
ARG
115
n
108
ARG
115
A
LEU
116
n
109
LEU
116
A
SER
117
n
110
SER
117
A
ALA
118
n
111
ALA
118
A
GLN
119
n
112
GLN
119
A
MET
120
n
113
MET
120
A
ALA
121
n
114
ALA
121
A
ARG
122
n
115
ARG
122
A
ARG
123
n
116
ARG
123
A
LEU
124
n
117
LEU
124
A
GLN
125
n
118
GLN
125
A
VAL
126
n
119
VAL
126
A
THR
127
n
120
THR
127
A
SER
128
n
121
SER
128
A
GLU
129
n
122
GLU
129
A
LYS
130
n
123
LYS
130
A
VAL
131
n
124
VAL
131
A
GLY
132
n
125
GLY
132
A
ASN
133
n
126
ASN
133
A
LEU
134
n
127
LEU
134
A
ALA
135
n
128
ALA
135
A
PHE
136
n
129
PHE
136
A
LEU
137
n
130
LEU
137
A
ASP
138
n
131
ASP
138
A
VAL
139
n
132
VAL
139
A
THR
140
n
133
THR
140
A
GLY
141
n
134
GLY
141
A
ARG
142
n
135
ARG
142
A
ILE
143
n
136
ILE
143
A
ALA
144
n
137
ALA
144
A
GLN
145
n
138
GLN
145
A
THR
146
n
139
THR
146
A
LEU
147
n
140
LEU
147
A
LEU
148
n
141
LEU
148
A
ASN
149
n
142
ASN
149
A
LEU
150
n
143
LEU
150
A
ALA
151
n
144
ALA
151
A
LYS
152
n
145
LYS
152
A
GLN
153
n
146
GLN
153
A
PRO
154
n
147
PRO
154
A
ASP
155
n
148
ASP
155
A
ALA
156
n
149
ALA
156
A
MET
157
n
150
MET
157
A
THR
158
n
151
THR
158
A
HIS
159
n
152
HIS
159
A
PRO
160
n
153
PRO
160
A
ASP
161
n
154
ASP
161
A
GLY
162
n
155
GLY
162
A
MET
163
n
156
MET
163
A
GLN
164
n
157
GLN
164
A
ILE
165
n
158
ILE
165
A
LYS
166
n
159
LYS
166
A
ILE
167
n
160
ILE
167
A
THR
168
n
161
THR
168
A
ARG
169
n
162
ARG
169
A
GLN
170
n
163
GLN
170
A
GLU
171
n
164
GLU
171
A
ILE
172
n
165
ILE
172
A
GLY
173
n
166
GLY
173
A
GLN
174
n
167
GLN
174
A
ILE
175
n
168
ILE
175
A
VAL
176
n
169
VAL
176
A
GLY
177
n
170
GLY
177
A
CYS
178
n
171
CYS
178
A
SER
179
n
172
SER
179
A
ARG
180
n
173
ARG
180
A
GLU
181
n
174
GLU
181
A
THR
182
n
175
THR
182
A
VAL
183
n
176
VAL
183
A
GLY
184
n
177
GLY
184
A
ARG
185
n
178
ARG
185
A
ILE
186
n
179
ILE
186
A
LEU
187
n
180
LEU
187
A
LYS
188
n
181
LYS
188
A
MET
189
n
182
MET
189
A
LEU
190
n
183
LEU
190
A
GLU
191
n
184
GLU
191
A
ASP
192
n
185
ASP
192
A
GLN
193
n
186
GLN
193
A
ASN
194
n
187
ASN
194
A
LEU
195
n
188
LEU
195
A
ILE
196
n
189
ILE
196
A
SER
197
n
190
SER
197
A
ALA
198
n
191
ALA
198
A
HIS
199
n
192
HIS
199
A
GLY
200
n
193
GLY
200
A
LYS
201
n
194
LYS
201
A
THR
202
n
195
THR
202
A
ILE
203
n
196
ILE
203
A
VAL
204
n
197
VAL
204
A
VAL
205
n
198
VAL
205
A
TYR
206
n
199
TYR
206
A
GLY
207
n
200
GLY
207
A
n
1
8
B
PRO
9
n
2
PRO
9
B
THR
10
n
3
THR
10
B
LEU
11
n
4
LEU
11
B
GLU
12
n
5
GLU
12
B
TRP
13
n
6
TRP
13
B
PHE
14
n
7
PHE
14
B
LEU
15
n
8
LEU
15
B
SER
16
n
9
SER
16
B
HIS
17
n
10
HIS
17
B
CYS
18
n
11
CYS
18
B
HIS
19
n
12
HIS
19
B
ILE
20
n
13
ILE
20
B
HIS
21
n
14
HIS
21
B
LYS
22
n
15
LYS
22
B
TYR
23
n
16
TYR
23
B
PRO
24
n
17
PRO
24
B
SER
25
n
18
SER
25
B
LYS
26
n
19
LYS
26
B
SER
27
n
20
SER
27
B
THR
28
n
21
THR
28
B
LEU
29
n
22
LEU
29
B
ILE
30
n
23
ILE
30
B
HIS
31
n
24
HIS
31
B
GLN
32
n
25
GLN
32
B
GLY
33
n
26
GLY
33
B
GLU
34
n
27
GLU
34
B
LYS
35
n
28
LYS
35
B
ALA
36
n
29
ALA
36
B
GLU
37
n
30
GLU
37
B
THR
38
n
31
THR
38
B
LEU
39
n
32
LEU
39
B
TYR
40
n
33
TYR
40
B
TYR
41
n
34
TYR
41
B
ILE
42
n
35
ILE
42
B
VAL
43
n
36
VAL
43
B
LYS
44
n
37
LYS
44
B
GLY
45
n
38
GLY
45
B
SER
46
n
39
SER
46
B
VAL
47
n
40
VAL
47
B
ALA
48
n
41
ALA
48
B
VAL
49
n
42
VAL
49
B
LEU
50
n
43
LEU
50
B
ILE
51
n
44
ILE
51
B
LYS
52
n
45
LYS
52
B
ASP
53
n
46
ASP
53
B
GLU
54
n
47
GLU
54
B
GLU
55
n
48
GLU
55
B
GLY
56
n
49
GLY
56
B
LYS
57
n
50
LYS
57
B
GLU
58
n
51
GLU
58
B
MET
59
n
52
MET
59
B
ILE
60
n
53
ILE
60
B
LEU
61
n
54
LEU
61
B
SER
62
n
55
SER
62
B
TYR
63
n
56
TYR
63
B
LEU
64
n
57
LEU
64
B
ASN
65
n
58
ASN
65
B
GLN
66
n
59
GLN
66
B
GLY
67
n
60
GLY
67
B
ASP
68
n
61
ASP
68
B
PHE
69
n
62
PHE
69
B
ILE
70
n
63
ILE
70
B
GLY
71
n
64
GLY
71
B
GLU
72
n
65
GLU
72
B
LEU
73
n
66
LEU
73
B
GLY
74
n
67
GLY
74
B
LEU
75
n
68
LEU
75
B
PHE
76
n
69
PHE
76
B
GLU
77
n
70
GLU
77
B
GLU
78
n
71
GLU
78
B
GLY
79
n
72
GLY
79
B
GLN
80
n
73
GLN
80
B
GLU
81
n
74
GLU
81
B
ARG
82
n
75
ARG
82
B
SER
83
n
76
SER
83
B
ALA
84
n
77
ALA
84
B
TRP
85
n
78
TRP
85
B
VAL
86
n
79
VAL
86
B
ARG
87
n
80
ARG
87
B
ALA
88
n
81
ALA
88
B
LYS
89
n
82
LYS
89
B
THR
90
n
83
THR
90
B
ALA
91
n
84
ALA
91
B
CYS
92
n
85
CYS
92
B
GLU
93
n
86
GLU
93
B
VAL
94
n
87
VAL
94
B
ALA
95
n
88
ALA
95
B
GLU
96
n
89
GLU
96
B
ILE
97
n
90
ILE
97
B
SER
98
n
91
SER
98
B
TYR
99
n
92
TYR
99
B
LYS
100
n
93
LYS
100
B
LYS
101
n
94
LYS
101
B
PHE
102
n
95
PHE
102
B
ARG
103
n
96
ARG
103
B
GLN
104
n
97
GLN
104
B
LEU
105
n
98
LEU
105
B
ILE
106
n
99
ILE
106
B
GLN
107
n
100
GLN
107
B
VAL
108
n
101
VAL
108
B
ASN
109
n
102
ASN
109
B
PRO
110
n
103
PRO
110
B
ASP
111
n
104
ASP
111
B
ILE
112
n
105
ILE
112
B
LEU
113
n
106
LEU
113
B
MET
114
n
107
MET
114
B
ARG
115
n
108
ARG
115
B
LEU
116
n
109
LEU
116
B
SER
117
n
110
SER
117
B
ALA
118
n
111
ALA
118
B
GLN
119
n
112
GLN
119
B
MET
120
n
113
MET
120
B
ALA
121
n
114
ALA
121
B
ARG
122
n
115
ARG
122
B
ARG
123
n
116
ARG
123
B
LEU
124
n
117
LEU
124
B
GLN
125
n
118
GLN
125
B
VAL
126
n
119
VAL
126
B
THR
127
n
120
THR
127
B
SER
128
n
121
SER
128
B
GLU
129
n
122
GLU
129
B
LYS
130
n
123
LYS
130
B
VAL
131
n
124
VAL
131
B
GLY
132
n
125
GLY
132
B
ASN
133
n
126
ASN
133
B
LEU
134
n
127
LEU
134
B
ALA
135
n
128
ALA
135
B
PHE
136
n
129
PHE
136
B
LEU
137
n
130
LEU
137
B
ASP
138
n
131
ASP
138
B
VAL
139
n
132
VAL
139
B
THR
140
n
133
THR
140
B
GLY
141
n
134
GLY
141
B
ARG
142
n
135
ARG
142
B
ILE
143
n
136
ILE
143
B
ALA
144
n
137
ALA
144
B
GLN
145
n
138
GLN
145
B
THR
146
n
139
THR
146
B
LEU
147
n
140
LEU
147
B
LEU
148
n
141
LEU
148
B
ASN
149
n
142
ASN
149
B
LEU
150
n
143
LEU
150
B
ALA
151
n
144
ALA
151
B
LYS
152
n
145
LYS
152
B
GLN
153
n
146
GLN
153
B
PRO
154
n
147
PRO
154
B
ASP
155
n
148
ASP
155
B
ALA
156
n
149
ALA
156
B
MET
157
n
150
MET
157
B
THR
158
n
151
THR
158
B
HIS
159
n
152
HIS
159
B
PRO
160
n
153
PRO
160
B
ASP
161
n
154
ASP
161
B
GLY
162
n
155
GLY
162
B
MET
163
n
156
MET
163
B
GLN
164
n
157
GLN
164
B
ILE
165
n
158
ILE
165
B
LYS
166
n
159
LYS
166
B
ILE
167
n
160
ILE
167
B
THR
168
n
161
THR
168
B
ARG
169
n
162
ARG
169
B
GLN
170
n
163
GLN
170
B
GLU
171
n
164
GLU
171
B
ILE
172
n
165
ILE
172
B
GLY
173
n
166
GLY
173
B
GLN
174
n
167
GLN
174
B
ILE
175
n
168
ILE
175
B
VAL
176
n
169
VAL
176
B
GLY
177
n
170
GLY
177
B
CYS
178
n
171
CYS
178
B
SER
179
n
172
SER
179
B
ARG
180
n
173
ARG
180
B
GLU
181
n
174
GLU
181
B
THR
182
n
175
THR
182
B
VAL
183
n
176
VAL
183
B
GLY
184
n
177
GLY
184
B
ARG
185
n
178
ARG
185
B
ILE
186
n
179
ILE
186
B
LEU
187
n
180
LEU
187
B
LYS
188
n
181
LYS
188
B
MET
189
n
182
MET
189
B
LEU
190
n
183
LEU
190
B
GLU
191
n
184
GLU
191
B
ASP
192
n
185
ASP
192
B
GLN
193
n
186
GLN
193
B
ASN
194
n
187
ASN
194
B
LEU
195
n
188
LEU
195
B
ILE
196
n
189
ILE
196
B
SER
197
n
190
SER
197
B
ALA
198
n
191
ALA
198
B
HIS
199
n
192
HIS
199
B
GLY
200
n
193
GLY
200
B
LYS
201
n
194
LYS
201
B
THR
202
n
195
THR
202
B
ILE
203
n
196
ILE
203
B
VAL
204
n
197
VAL
204
B
VAL
205
n
198
VAL
205
B
n
199
206
B
n
200
207
B
author_defined_assembly
6
hexameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
HIS
21
E
N
HIS
14
A
O
VAL
94
E
O
VAL
87
A
O
ALA
95
E
O
ALA
88
A
N
TYR
41
E
N
TYR
34
A
N
TYR
40
E
N
TYR
33
A
O
ILE
70
E
O
ILE
63
A
N
ILE
30
E
N
ILE
23
A
O
VAL
86
E
O
VAL
79
A
O
TRP
85
E
O
TRP
78
A
N
LEU
50
E
N
LEU
43
A
N
VAL
49
E
N
VAL
42
A
O
SER
62
E
O
SER
55
A
N
MET
157
E
N
MET
150
A
O
GLN
164
E
O
GLN
157
A
N
MET
163
E
N
MET
156
A
O
VAL
204
E
O
VAL
197
B
O
ILE
70
F
O
ILE
63
B
N
TYR
40
F
N
TYR
33
B
N
LYS
44
F
N
LYS
37
B
O
GLU
93
F
O
GLU
86
B
O
SER
62
F
O
SER
55
B
N
VAL
49
F
N
VAL
42
B
N
LEU
50
F
N
LEU
43
B
O
TRP
85
F
O
TRP
78
B
N
HIS
159
F
N
HIS
152
B
O
GLY
162
F
O
GLY
155
1
A
ASP
8
E
ASP
1
1
Y
1
B
ASP
8
F
ASP
1
1
Y
1
B
TYR
206
F
TYR
199
1
Y
1
B
GLY
207
F
GLY
200
1
Y
1
D
A
OP2
OG1
DA
THR
9
182
2.08
1
11.82
1.50
119.30
131.12
B
B
B
C
N
CA
GLN
PRO
PRO
153
154
154
Y
1
A
CYS
18
-171.19
73.37
1
A
HIS
19
-34.95
136.55
1
A
SER
25
-34.19
135.70
1
A
GLU
34
-37.22
150.76
1
A
GLU
37
-160.16
3.32
1
A
LYS
44
-176.96
140.86
1
A
VAL
47
-112.09
-166.13
1
A
SER
62
171.07
171.57
1
A
ASN
65
-109.11
-166.04
1
A
ILE
97
-123.63
-58.63
1
A
SER
98
122.05
129.85
1
A
ILE
106
-90.08
-63.70
1
A
ASN
109
-161.85
75.11
1
A
PRO
110
-55.21
-2.58
1
A
ILE
112
-54.86
-9.99
1
A
MET
114
-83.98
-76.06
1
A
ARG
115
-24.66
-53.05
1
A
ALA
121
-35.19
-71.72
1
A
THR
140
-58.98
-78.02
1
A
ALA
151
-44.14
-12.88
1
A
PRO
154
-56.49
73.45
1
A
ASP
155
162.01
15.73
1
A
GLU
181
-62.42
-88.01
1
A
THR
182
-26.25
-28.90
1
A
ALA
198
-110.92
-113.11
1
A
HIS
199
77.57
84.39
1
A
VAL
205
59.09
77.48
1
A
TYR
206
53.43
157.07
1
B
LEU
11
-56.75
-1.18
1
B
SER
25
-67.28
80.65
1
B
LYS
26
137.64
-15.42
1
B
LYS
35
30.12
107.32
1
B
GLU
37
-141.73
25.42
1
B
ILE
42
-34.27
105.50
1
B
GLU
54
-15.18
-66.47
1
B
GLU
55
-56.70
0.12
1
B
GLN
66
-58.26
93.69
1
B
LEU
73
-40.23
-0.89
1
B
GLU
78
-49.05
160.97
1
B
ARG
82
-24.56
157.94
1
B
THR
90
-107.80
-145.19
1
B
ILE
97
-175.45
139.31
1
B
VAL
108
-66.53
-72.12
1
B
ALA
121
176.87
-34.42
1
B
GLN
125
-73.68
-70.38
1
B
VAL
139
-9.61
-51.89
1
B
THR
140
-53.23
-73.31
1
B
LYS
152
-87.44
-124.18
1
B
GLN
153
-10.69
132.59
1
B
PRO
154
-18.60
170.76
1
B
ASP
155
76.77
-16.26
1
B
VAL
176
-63.18
-82.78
1
B
THR
182
-171.65
-56.18
1
B
ASN
194
94.90
28.96
1
B
ILE
196
-134.41
-135.03
1
B
SER
197
-171.83
149.86
1
B
HIS
199
167.52
70.45
1
B
VAL
204
-78.04
48.62
PROTEIN_REP.PARAM
PROTEIN.TOP
DNA-RNA_REP.PARAM
DNA-RNA.TOP
CMP.PARAM
CMP.TOP
WATER_REP.PARAM
WATER.TOP
31.0
18.78
0.00
0.00
-11.72
0.00
-7.06
0.303
0.011
0.23
0.2301
2.80
20.00
747
14452
5.200
72.2
RANDOM
1827714.04
0.0
1
RESTRAINED
THROUGHOUT
0.000
ENGH & HUBER
FLAT MODEL
55.06
0.299
0.49
0.35
5.00
0.54
0.36
2.80
20.00
56
4491
44
1262
3129
0.010
1.60
22.40
1.07
1.330
1.500
2.250
2.000
2.250
2.000
3.280
2.500
0.374
0.041
0.269
2.97
85
1752
6
4.60
56.10
2.800
20.000
1O3T
14452
1
data reduction
VRIED
phasing
AMoRE
refinement
CNS
0.5
data scaling
VRIED
PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES
1
N
N
2
N
N
2
N
N
1
N
N
3
N
N
3
N
N
4
N
N
4
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
A
LEU
11
E
LEU
4
HELX_P
A
HIS
17
E
HIS
10
1
1
7
A
SER
98
E
SER
91
HELX_P
A
VAL
108
E
VAL
101
1
2
11
A
ASP
111
E
ASP
104
HELX_P
A
LEU
137
E
LEU
130
1
3
27
A
THR
140
E
THR
133
HELX_P
A
LYS
152
E
LYS
145
1
4
13
A
THR
168
E
THR
161
HELX_P
A
GLY
177
E
GLY
170
1
5
10
A
SER
179
E
SER
172
HELX_P
A
GLN
193
E
GLN
186
1
6
15
B
THR
10
F
THR
3
HELX_P
B
SER
16
F
SER
9
1
7
7
B
SER
98
F
SER
91
HELX_P
B
ASN
109
F
ASN
102
1
8
12
B
ILE
112
F
ILE
105
HELX_P
B
PHE
136
F
PHE
129
1
9
25
B
ASP
138
F
ASP
131
HELX_P
B
LYS
152
F
LYS
145
1
10
15
B
THR
168
F
THR
161
HELX_P
B
GLY
177
F
GLY
170
1
11
10
B
SER
179
F
SER
172
HELX_P
B
ASN
194
F
ASN
187
1
12
16
hydrog
WATSON-CRICK
C
DC
-4
A
N3
DC
2
1_555
D
DG
-4
B
N1
DG
17
1_555
hydrog
WATSON-CRICK
C
DC
-4
A
N4
DC
2
1_555
D
DG
-4
B
O6
DG
17
1_555
hydrog
WATSON-CRICK
C
DC
-4
A
O2
DC
2
1_555
D
DG
-4
B
N2
DG
17
1_555
hydrog
WATSON-CRICK
C
DG
-3
A
N1
DG
3
1_555
D
DC
-3
B
N3
DC
16
1_555
hydrog
WATSON-CRICK
C
DG
-3
A
N2
DG
3
1_555
D
DC
-3
B
O2
DC
16
1_555
hydrog
WATSON-CRICK
C
DG
-3
A
O6
DG
3
1_555
D
DC
-3
B
N4
DC
16
1_555
hydrog
WATSON-CRICK
C
DA
-2
A
N1
DA
4
1_555
D
DT
-2
B
N3
DT
15
1_555
hydrog
WATSON-CRICK
C
DA
-2
A
N6
DA
4
1_555
D
DT
-2
B
O4
DT
15
1_555
hydrog
WATSON-CRICK
C
DA
-1
A
N1
DA
5
1_555
D
DT
-1
B
N3
DT
14
1_555
hydrog
WATSON-CRICK
C
DA
-1
A
N6
DA
5
1_555
D
DT
-1
B
O4
DT
14
1_555
hydrog
WATSON-CRICK
C
DA
1
A
N1
DA
6
1_555
D
DT
1
B
N3
DT
13
1_555
hydrog
WATSON-CRICK
C
DA
1
A
N6
DA
6
1_555
D
DT
1
B
O4
DT
13
1_555
hydrog
DA-DT PAIR
C
DA
2
A
N6
DA
7
1_555
D
DT
3
B
O4
DT
11
1_555
hydrog
WATSON-CRICK
C
DA
2
A
N1
DA
7
1_555
D
DT
2
B
N3
DT
12
1_555
hydrog
WATSON-CRICK
C
DA
2
A
N6
DA
7
1_555
D
DT
2
B
O4
DT
12
1_555
hydrog
WATSON-CRICK
C
DA
3
A
N1
DA
8
1_555
D
DT
3
B
N3
DT
11
1_555
hydrog
WATSON-CRICK
C
DA
3
A
N6
DA
8
1_555
D
DT
3
B
O4
DT
11
1_555
hydrog
WATSON-CRICK
C
DT
4
A
N3
DT
9
1_555
D
DA
4
B
N1
DA
10
1_555
hydrog
WATSON-CRICK
C
DT
4
A
O4
DT
9
1_555
D
DA
4
B
N6
DA
10
1_555
hydrog
WATSON-CRICK
C
DG
5
A
N1
DG
10
1_555
D
DC
5
B
N3
DC
9
1_555
hydrog
WATSON-CRICK
C
DG
5
A
N2
DG
10
1_555
D
DC
5
B
O2
DC
9
1_555
hydrog
WATSON-CRICK
C
DG
5
A
O6
DG
10
1_555
D
DC
5
B
N4
DC
9
1_555
hydrog
WATSON-CRICK
C
DC
6
A
N3
DC
11
1_555
D
DG
6
B
N1
DG
8
1_555
hydrog
WATSON-CRICK
C
DC
6
A
N4
DC
11
1_555
D
DG
6
B
O6
DG
8
1_555
hydrog
WATSON-CRICK
C
DC
6
A
O2
DC
11
1_555
D
DG
6
B
N2
DG
8
1_555
hydrog
WATSON-CRICK
C
DG
7
A
N1
DG
12
1_555
D
DC
7
B
N3
DC
7
1_555
hydrog
WATSON-CRICK
C
DG
7
A
N2
DG
12
1_555
D
DC
7
B
O2
DC
7
1_555
hydrog
WATSON-CRICK
C
DG
7
A
O6
DG
12
1_555
D
DC
7
B
N4
DC
7
1_555
hydrog
WATSON-CRICK
C
DA
8
A
N1
DA
13
1_555
D
DT
8
B
N3
DT
6
1_555
hydrog
WATSON-CRICK
C
DA
8
A
N6
DA
13
1_555
D
DT
8
B
O4
DT
6
1_555
hydrog
WATSON-CRICK
C
DT
9
A
N3
DT
14
1_555
D
DA
9
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
C
DT
9
A
O4
DT
14
1_555
D
DA
9
B
N6
DA
5
1_555
hydrog
WATSON-CRICK
D
DC
13
B
N3
DC
1
1_555
E
DG
13
C
N1
DG
4
1_555
hydrog
WATSON-CRICK
D
DC
13
B
N4
DC
1
1_555
E
DG
13
C
O6
DG
4
1_555
hydrog
WATSON-CRICK
D
DC
13
B
O2
DC
1
1_555
E
DG
13
C
N2
DG
4
1_555
hydrog
WATSON-CRICK
D
DT
12
B
N3
DT
2
1_555
E
DA
12
C
N1
DA
3
1_555
hydrog
WATSON-CRICK
D
DT
12
B
O4
DT
2
1_555
E
DA
12
C
N6
DA
3
1_555
hydrog
WATSON-CRICK
D
DA
11
B
N1
DA
3
1_555
E
DT
11
C
N3
DT
2
1_555
hydrog
WATSON-CRICK
D
DA
11
B
N6
DA
3
1_555
E
DT
11
C
O4
DT
2
1_555
hydrog
WATSON-CRICK
D
DG
10
B
N1
DG
4
1_555
E
DC
10
C
N3
DC
1
1_555
hydrog
WATSON-CRICK
D
DG
10
B
N2
DG
4
1_555
E
DC
10
C
O2
DC
1
1_555
hydrog
WATSON-CRICK
D
DG
10
B
O6
DG
4
1_555
E
DC
10
C
N4
DC
1
1_555
hydrog
DG-DT MISPAIR
D
DG
10
B
N2
DG
4
1_555
E
DT
11
C
O2
DT
2
1_555
hydrog
WATSON-CRICK
E
DA
14
C
N1
DA
5
1_555
F
DT
14
D
N3
DT
14
1_555
hydrog
WATSON-CRICK
E
DA
14
C
N6
DA
5
1_555
F
DT
14
D
O4
DT
14
1_555
hydrog
WATSON-CRICK
E
DT
15
C
N3
DT
6
1_555
F
DA
15
D
N1
DA
13
1_555
hydrog
WATSON-CRICK
E
DT
15
C
O4
DT
6
1_555
F
DA
15
D
N6
DA
13
1_555
hydrog
WATSON-CRICK
E
DC
16
C
N3
DC
7
1_555
F
DG
16
D
N1
DG
12
1_555
hydrog
WATSON-CRICK
E
DC
16
C
N4
DC
7
1_555
F
DG
16
D
O6
DG
12
1_555
hydrog
WATSON-CRICK
E
DC
16
C
O2
DC
7
1_555
F
DG
16
D
N2
DG
12
1_555
hydrog
WATSON-CRICK
E
DG
17
C
N1
DG
8
1_555
F
DC
17
D
N3
DC
11
1_555
hydrog
WATSON-CRICK
E
DG
17
C
N2
DG
8
1_555
F
DC
17
D
O2
DC
11
1_555
hydrog
WATSON-CRICK
E
DG
17
C
O6
DG
8
1_555
F
DC
17
D
N4
DC
11
1_555
hydrog
WATSON-CRICK
E
DC
18
C
N3
DC
9
1_555
F
DG
18
D
N1
DG
10
1_555
hydrog
WATSON-CRICK
E
DC
18
C
N4
DC
9
1_555
F
DG
18
D
O6
DG
10
1_555
hydrog
WATSON-CRICK
E
DC
18
C
O2
DC
9
1_555
F
DG
18
D
N2
DG
10
1_555
hydrog
WATSON-CRICK
E
DA
19
C
N1
DA
10
1_555
F
DT
19
D
N3
DT
9
1_555
hydrog
WATSON-CRICK
E
DA
19
C
N6
DA
10
1_555
F
DT
19
D
O4
DT
9
1_555
hydrog
WATSON-CRICK
E
DT
20
C
N3
DT
11
1_555
F
DA
20
D
N1
DA
8
1_555
hydrog
WATSON-CRICK
E
DT
20
C
O4
DT
11
1_555
F
DA
20
D
N6
DA
8
1_555
hydrog
WATSON-CRICK
E
DT
21
C
N3
DT
12
1_555
F
DA
21
D
N1
DA
7
1_555
hydrog
WATSON-CRICK
E
DT
21
C
O4
DT
12
1_555
F
DA
21
D
N6
DA
7
1_555
hydrog
WATSON-CRICK
E
DT
22
C
N3
DT
13
1_555
F
DA
22
D
N1
DA
6
1_555
hydrog
WATSON-CRICK
E
DT
22
C
O4
DT
13
1_555
F
DA
22
D
N6
DA
6
1_555
hydrog
WATSON-CRICK
E
DT
23
C
N3
DT
14
1_555
F
DA
23
D
N1
DA
5
1_555
hydrog
WATSON-CRICK
E
DT
23
C
O4
DT
14
1_555
F
DA
23
D
N6
DA
5
1_555
hydrog
WATSON-CRICK
E
DT
24
C
N3
DT
15
1_555
F
DA
24
D
N1
DA
4
1_555
hydrog
WATSON-CRICK
E
DT
24
C
O4
DT
15
1_555
F
DA
24
D
N6
DA
4
1_555
hydrog
WATSON-CRICK
E
DC
25
C
N3
DC
16
1_555
F
DG
25
D
N1
DG
3
1_555
hydrog
WATSON-CRICK
E
DC
25
C
N4
DC
16
1_555
F
DG
25
D
O6
DG
3
1_555
hydrog
WATSON-CRICK
E
DC
25
C
O2
DC
16
1_555
F
DG
25
D
N2
DG
3
1_555
hydrog
WATSON-CRICK
E
DG
26
C
N1
DG
17
1_555
F
DC
26
D
N3
DC
2
1_555
hydrog
WATSON-CRICK
E
DG
26
C
N2
DG
17
1_555
F
DC
26
D
O2
DC
2
1_555
hydrog
WATSON-CRICK
E
DG
26
C
O6
DG
17
1_555
F
DC
26
D
N4
DC
2
1_555
GENE REGULATION/DNA
PROTEIN-DNA COMPLEX, CAP, CAP-DNA, CATABOLITE GENE ACTIVATOR PROTEIN, CAMP RECEPTOR PROTEIN, CRP, GENE REGULATION-DNA COMPLEX
CRP_ECOLI
UNP
3
9
P0ACJ8
DPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVR
AKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKI
TRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYG
1O3T
PDB
1
1O3T
1O3T
PDB
2
1O3T
9
208
1O3T
8
207
P0ACJ8
A
1
1
200
9
208
1O3T
8
207
P0ACJ8
B
1
1
200
-5
9
1O3T
-5
9
1O3T
C
2
1
14
13
-4
1O3T
13
-4
1O3T
D
3
1
17
10
26
1O3T
10
26
1O3T
E
3
1
17
27
14
1O3T
27
14
1O3T
F
2
1
14
4
4
3
3
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
20
E
ILE
13
A
TYR
23
E
TYR
16
A
CYS
92
E
CYS
85
A
GLU
96
E
GLU
89
A
TYR
40
E
TYR
33
A
LYS
44
E
LYS
37
A
PHE
69
E
PHE
62
A
ILE
70
E
ILE
63
A
THR
28
E
THR
21
A
ILE
30
E
ILE
23
A
TRP
85
E
TRP
78
A
ARG
87
E
ARG
80
A
VAL
47
E
VAL
40
A
LYS
52
E
LYS
45
A
GLU
58
E
GLU
51
A
LEU
64
E
LEU
57
A
MET
157
E
MET
150
A
THR
158
E
THR
151
A
MET
163
E
MET
156
A
ILE
165
E
ILE
158
A
THR
202
E
THR
195
A
VAL
204
E
VAL
197
B
PHE
69
F
PHE
62
B
ILE
70
F
ILE
63
B
TYR
40
F
TYR
33
B
LYS
44
F
LYS
37
B
GLU
93
F
GLU
86
B
VAL
94
F
VAL
87
B
GLU
58
F
GLU
51
B
TYR
63
F
TYR
56
B
VAL
47
F
VAL
40
B
LYS
52
F
LYS
45
B
TRP
85
F
TRP
78
B
ALA
88
F
ALA
81
B
THR
158
F
THR
151
B
HIS
159
F
HIS
152
B
GLY
162
F
GLY
155
B
MET
163
F
MET
156
BINDING SITE FOR RESIDUE CMP B 761
B
CMP
761
Software
13
BINDING SITE FOR RESIDUE CMP A 762
A
CMP
762
Software
12
A
LEU
124
E
LEU
117
13
1_555
A
SER
128
E
SER
121
13
1_555
B
ILE
30
F
ILE
23
13
1_555
B
VAL
49
F
VAL
42
13
1_555
B
SER
62
F
SER
55
13
1_555
B
GLY
71
F
GLY
64
13
1_555
B
GLU
72
F
GLU
65
13
1_555
B
LEU
73
F
LEU
66
13
1_555
B
ARG
82
F
ARG
75
13
1_555
B
SER
83
F
SER
76
13
1_555
B
ALA
84
F
ALA
77
13
1_555
B
ARG
123
F
ARG
116
13
1_555
B
THR
127
F
THR
120
13
1_555
A
VAL
49
E
VAL
42
12
1_555
A
LEU
61
E
LEU
54
12
1_555
A
ILE
70
E
ILE
63
12
1_555
A
GLY
71
E
GLY
64
12
1_555
A
GLU
72
E
GLU
65
12
1_555
A
LEU
73
E
LEU
66
12
1_555
A
ARG
82
E
ARG
75
12
1_555
A
SER
83
E
SER
76
12
1_555
A
ALA
84
E
ALA
77
12
1_555
A
THR
127
E
THR
120
12
1_555
B
LEU
124
F
LEU
117
12
1_555
B
SER
128
F
SER
121
12
1_555
20
orthorhombic
C 2 2 21