0.017265 0.000000 0.000000 0.000000 0.017265 0.000000 0.000000 0.000000 0.015690 0.00000 0.00000 0.00000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 57.922 57.922 63.735 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US PROTEINS PSFGEY 0867 0887-3585 54 806 809 10.1002/prot.10631 14997578 Crystal structure of an HEPN domain protein (TM0613) from Thermotoga maritima at 1.75 A resolution. 2004 10.2210/pdb1o3u/pdb pdb_00001o3u 100.0 1 CCD 2002-12-11 ADSC DOUBLE-CRYSTAL SI(111) MAD M x-ray 1 0.97910 1.0 0.97930 1.0 0.91840 1.0 5.0.2 ALS 0.97910, 0.97930, 0.91840 SYNCHROTRON ALS BEAMLINE 5.0.2 15622.404 conserved hypothetical protein TM0613 1 man polymer 18.015 water 128 nat water no yes MGSDKIHHHHHHMDAAKDDLEHAKHDLEHGFYNWACFSSQQAAEKAVKAVFQR(MSE)GAQAWGYSVPDFLGELSSRFEI PEELMDHALELDKACIPTRYPDALPSGSPRNRYSRIEAERLVNYAEKIIRFCEDLLSRI MGSDKIHHHHHHMDAAKDDLEHAKHDLEHGFYNWACFSSQQAAEKAVKAVFQRMGAQAWGYSVPDFLGELSSRFEIPEEL MDHALELDKACIPTRYPDALPSGSPRNRYSRIEAERLVNYAEKIIRFCEDLLSRI A 282486 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Thermotoga Escherichia sample TM0613 2336 Thermotoga maritima 562 Escherichia coli PLASMID 1 1.74 28.84 8.00 10% PEG 8000; Imidazole pH 8.0; 0.2 M Ca(Ac)2, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K, pH 8.00 293 Joint Center for Structural Genomics JCSG PSI, Protein Structure Initiative software pdbx_database_related database_2 struct_conn struct_ref_seq_dif repository Initial release Version format compliance Advisory Version format compliance Refinement description Data collection Database references Database references Derived calculations 1 0 2003-04-22 1 1 2008-04-26 1 2 2011-07-13 1 3 2017-10-04 1 4 2018-07-18 1 5 2023-01-25 _software.classification _software.name _software.version _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). The biological unit was adjudged a dimer based on a considerable hydrophobic interface generated by crystallographic symmetry. Y RCSB Y RCSB 2003-03-28 REL REL HOH water HOH 1 2 HOH HOH 124 A HOH 2 2 HOH HOH 125 A HOH 3 2 HOH HOH 126 A HOH 4 2 HOH HOH 127 A HOH 5 2 HOH HOH 128 A HOH 6 2 HOH HOH 129 A HOH 7 2 HOH HOH 130 A HOH 8 2 HOH HOH 131 A HOH 9 2 HOH HOH 132 A HOH 10 2 HOH HOH 133 A HOH 11 2 HOH HOH 134 A HOH 12 2 HOH HOH 135 A HOH 13 2 HOH HOH 136 A HOH 14 2 HOH HOH 137 A HOH 15 2 HOH HOH 138 A HOH 16 2 HOH HOH 139 A HOH 17 2 HOH HOH 140 A HOH 18 2 HOH HOH 141 A HOH 19 2 HOH HOH 142 A HOH 20 2 HOH HOH 143 A HOH 21 2 HOH HOH 144 A HOH 22 2 HOH HOH 145 A HOH 23 2 HOH HOH 146 A HOH 24 2 HOH HOH 147 A HOH 25 2 HOH HOH 148 A HOH 26 2 HOH HOH 149 A HOH 27 2 HOH HOH 150 A HOH 28 2 HOH HOH 151 A HOH 29 2 HOH HOH 152 A HOH 30 2 HOH HOH 153 A HOH 31 2 HOH HOH 154 A HOH 32 2 HOH HOH 155 A HOH 33 2 HOH HOH 156 A HOH 34 2 HOH HOH 157 A HOH 35 2 HOH HOH 158 A HOH 36 2 HOH HOH 159 A HOH 37 2 HOH HOH 160 A HOH 38 2 HOH HOH 161 A HOH 39 2 HOH HOH 162 A HOH 40 2 HOH HOH 163 A HOH 41 2 HOH HOH 164 A HOH 42 2 HOH HOH 165 A HOH 43 2 HOH HOH 166 A HOH 44 2 HOH HOH 167 A HOH 45 2 HOH HOH 168 A HOH 46 2 HOH HOH 169 A HOH 47 2 HOH HOH 170 A HOH 48 2 HOH HOH 171 A HOH 49 2 HOH HOH 172 A HOH 50 2 HOH HOH 173 A HOH 51 2 HOH HOH 174 A HOH 52 2 HOH HOH 175 A HOH 53 2 HOH HOH 176 A HOH 54 2 HOH HOH 177 A HOH 55 2 HOH HOH 178 A HOH 56 2 HOH HOH 179 A HOH 57 2 HOH HOH 180 A HOH 58 2 HOH HOH 181 A HOH 59 2 HOH HOH 182 A HOH 60 2 HOH HOH 183 A HOH 61 2 HOH HOH 184 A HOH 62 2 HOH HOH 185 A HOH 63 2 HOH HOH 186 A HOH 64 2 HOH HOH 187 A HOH 65 2 HOH HOH 188 A HOH 66 2 HOH HOH 189 A HOH 67 2 HOH HOH 190 A HOH 68 2 HOH HOH 191 A HOH 69 2 HOH HOH 192 A HOH 70 2 HOH HOH 193 A HOH 71 2 HOH HOH 194 A HOH 72 2 HOH HOH 195 A HOH 73 2 HOH HOH 196 A HOH 74 2 HOH HOH 197 A HOH 75 2 HOH HOH 198 A HOH 76 2 HOH HOH 199 A HOH 77 2 HOH HOH 200 A HOH 78 2 HOH HOH 201 A HOH 79 2 HOH HOH 202 A HOH 80 2 HOH HOH 203 A HOH 81 2 HOH HOH 204 A HOH 82 2 HOH HOH 205 A HOH 83 2 HOH HOH 206 A HOH 84 2 HOH HOH 207 A HOH 85 2 HOH HOH 208 A HOH 86 2 HOH HOH 209 A HOH 87 2 HOH HOH 210 A HOH 88 2 HOH HOH 211 A HOH 89 2 HOH HOH 212 A HOH 90 2 HOH HOH 213 A HOH 91 2 HOH HOH 214 A HOH 92 2 HOH HOH 215 A HOH 93 2 HOH HOH 216 A HOH 94 2 HOH HOH 217 A HOH 95 2 HOH HOH 218 A HOH 96 2 HOH HOH 219 A HOH 97 2 HOH HOH 220 A HOH 98 2 HOH HOH 221 A HOH 99 2 HOH HOH 222 A HOH 100 2 HOH HOH 223 A HOH 101 2 HOH HOH 224 A HOH 102 2 HOH HOH 225 A HOH 103 2 HOH HOH 226 A HOH 104 2 HOH HOH 227 A HOH 105 2 HOH HOH 228 A HOH 106 2 HOH HOH 229 A HOH 107 2 HOH HOH 230 A HOH 108 2 HOH HOH 231 A HOH 109 2 HOH HOH 232 A HOH 110 2 HOH HOH 233 A HOH 111 2 HOH HOH 234 A HOH 112 2 HOH HOH 235 A HOH 113 2 HOH HOH 236 A HOH 114 2 HOH HOH 237 A HOH 115 2 HOH HOH 238 A HOH 116 2 HOH HOH 239 A HOH 117 2 HOH HOH 240 A HOH 118 2 HOH HOH 241 A HOH 119 2 HOH HOH 242 A HOH 120 2 HOH HOH 243 A HOH 121 2 HOH HOH 244 A HOH 122 2 HOH HOH 245 A HOH 124 2 HOH HOH 246 A HOH 125 2 HOH HOH 247 A HOH 126 2 HOH HOH 248 A HOH 127 2 HOH HOH 249 A HOH 128 2 HOH HOH 250 A HOH 129 2 HOH HOH 251 A n 1 -11 A n 2 -10 A n 3 -9 A n 4 -8 A n 5 -7 A n 6 -6 A n 7 -5 A n 8 -4 A n 9 -3 A HIS -2 n 10 HIS -2 A HIS -1 n 11 HIS -1 A HIS 0 n 12 HIS 0 A MET 1 n 13 MET 1 A ASP 2 n 14 ASP 2 A ALA 3 n 15 ALA 3 A ALA 4 n 16 ALA 4 A LYS 5 n 17 LYS 5 A ASP 6 n 18 ASP 6 A ASP 7 n 19 ASP 7 A LEU 8 n 20 LEU 8 A GLU 9 n 21 GLU 9 A HIS 10 n 22 HIS 10 A ALA 11 n 23 ALA 11 A LYS 12 n 24 LYS 12 A HIS 13 n 25 HIS 13 A ASP 14 n 26 ASP 14 A LEU 15 n 27 LEU 15 A GLU 16 n 28 GLU 16 A HIS 17 n 29 HIS 17 A GLY 18 n 30 GLY 18 A PHE 19 n 31 PHE 19 A TYR 20 n 32 TYR 20 A ASN 21 n 33 ASN 21 A TRP 22 n 34 TRP 22 A ALA 23 n 35 ALA 23 A CYS 24 n 36 CYS 24 A PHE 25 n 37 PHE 25 A SER 26 n 38 SER 26 A SER 27 n 39 SER 27 A GLN 28 n 40 GLN 28 A GLN 29 n 41 GLN 29 A ALA 30 n 42 ALA 30 A ALA 31 n 43 ALA 31 A GLU 32 n 44 GLU 32 A LYS 33 n 45 LYS 33 A ALA 34 n 46 ALA 34 A VAL 35 n 47 VAL 35 A LYS 36 n 48 LYS 36 A ALA 37 n 49 ALA 37 A VAL 38 n 50 VAL 38 A PHE 39 n 51 PHE 39 A GLN 40 n 52 GLN 40 A ARG 41 n 53 ARG 41 A MSE 42 n 54 MSE 42 A GLY 43 n 55 GLY 43 A ALA 44 n 56 ALA 44 A GLN 45 n 57 GLN 45 A ALA 46 n 58 ALA 46 A TRP 47 n 59 TRP 47 A GLY 48 n 60 GLY 48 A TYR 49 n 61 TYR 49 A SER 50 n 62 SER 50 A VAL 51 n 63 VAL 51 A PRO 52 n 64 PRO 52 A ASP 53 n 65 ASP 53 A PHE 54 n 66 PHE 54 A LEU 55 n 67 LEU 55 A GLY 56 n 68 GLY 56 A GLU 57 n 69 GLU 57 A LEU 58 n 70 LEU 58 A SER 59 n 71 SER 59 A SER 60 n 72 SER 60 A ARG 61 n 73 ARG 61 A PHE 62 n 74 PHE 62 A GLU 63 n 75 GLU 63 A ILE 64 n 76 ILE 64 A PRO 65 n 77 PRO 65 A GLU 66 n 78 GLU 66 A GLU 67 n 79 GLU 67 A LEU 68 n 80 LEU 68 A MET 69 n 81 MET 69 A ASP 70 n 82 ASP 70 A HIS 71 n 83 HIS 71 A ALA 72 n 84 ALA 72 A LEU 73 n 85 LEU 73 A GLU 74 n 86 GLU 74 A LEU 75 n 87 LEU 75 A ASP 76 n 88 ASP 76 A LYS 77 n 89 LYS 77 A ALA 78 n 90 ALA 78 A CYS 79 n 91 CYS 79 A n 92 80 A n 93 81 A n 94 82 A n 95 83 A n 96 84 A n 97 85 A ASP 86 n 98 ASP 86 A ALA 87 n 99 ALA 87 A LEU 88 n 100 LEU 88 A PRO 89 n 101 PRO 89 A SER 90 n 102 SER 90 A GLY 91 n 103 GLY 91 A SER 92 n 104 SER 92 A PRO 93 n 105 PRO 93 A ARG 94 n 106 ARG 94 A ASN 95 n 107 ASN 95 A ARG 96 n 108 ARG 96 A TYR 97 n 109 TYR 97 A SER 98 n 110 SER 98 A ARG 99 n 111 ARG 99 A ILE 100 n 112 ILE 100 A GLU 101 n 113 GLU 101 A ALA 102 n 114 ALA 102 A GLU 103 n 115 GLU 103 A ARG 104 n 116 ARG 104 A LEU 105 n 117 LEU 105 A VAL 106 n 118 VAL 106 A ASN 107 n 119 ASN 107 A TYR 108 n 120 TYR 108 A ALA 109 n 121 ALA 109 A GLU 110 n 122 GLU 110 A LYS 111 n 123 LYS 111 A ILE 112 n 124 ILE 112 A ILE 113 n 125 ILE 113 A ARG 114 n 126 ARG 114 A PHE 115 n 127 PHE 115 A CYS 116 n 128 CYS 116 A GLU 117 n 129 GLU 117 A ASP 118 n 130 ASP 118 A LEU 119 n 131 LEU 119 A LEU 120 n 132 LEU 120 A SER 121 n 133 SER 121 A ARG 122 n 134 ARG 122 A ILE 123 n 135 ILE 123 A 1.1148 -0.7699 -0.0669 1.6545 0.6988 0.5058 0.0370 0.1649 0.0367 -0.2173 0.0346 -0.0922 -0.1733 -0.0567 -0.0716 0.0183 -0.0181 -0.0062 0.0104 0.0060 -0.0288 refined 6.7720 9.1380 19.0470 X-RAY DIFFRACTION A -2 A 10 A 123 A 135 X-RAY DIFFRACTION 1 author_defined_assembly 2 dimeric A MSE 42 SELENOMETHIONINE A MSE 54 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 8_555 -y,-x,-z+1/2 crystal symmetry operation 0.0000000000 0.0000000000 31.8675000000 1 A CE LYS 5 A CE LYS 17 1 Y 1 A NZ LYS 5 A NZ LYS 17 1 Y 1 A NZ LYS 36 A NZ LYS 48 1 Y 1 A NE ARG 122 A NE ARG 134 1 Y 1 A CZ ARG 122 A CZ ARG 134 1 Y 1 A NH1 ARG 122 A NH1 ARG 134 1 Y 1 A NH2 ARG 122 A NH2 ARG 134 1 Y 1 A MET -11 A MET 1 1 Y 1 A GLY -10 A GLY 2 1 Y 1 A SER -9 A SER 3 1 Y 1 A ASP -8 A ASP 4 1 Y 1 A LYS -7 A LYS 5 1 Y 1 A ILE -6 A ILE 6 1 Y 1 A HIS -5 A HIS 7 1 Y 1 A HIS -4 A HIS 8 1 Y 1 A HIS -3 A HIS 9 1 Y 1 A ILE 80 A ILE 92 1 Y 1 A PRO 81 A PRO 93 1 Y 1 A THR 82 A THR 94 1 Y 1 A ARG 83 A ARG 95 1 Y 1 A TYR 84 A TYR 96 1 Y 1 A PRO 85 A PRO 97 1 Y 1 A SER 90 -48.18 151.70 16.26 -0.44000 0.00000 0.00000 -0.44000 0.00000 0.87000 0.952 0.926 0.237 0.179 0.185 1.75 25.90 1079 9855 9.900 95.5 6.266 0.095 RANDOM LIKELY RESIDUAL 1 Isotropic THROUGHOUT 0.000 MAD 0.147 0.146 0.80 0.80 1.40 BABINET MODEL WITH MASK 1.75 25.90 128 1091 0 0 963 0.016 0.021 993 0.002 0.020 859 1.255 1.932 1338 0.787 3.000 1999 4.846 5.000 118 37.000 23.889 54 13.712 15.000 168 19.450 15.000 7 0.076 0.200 136 0.005 0.020 1117 0.001 0.020 212 0.211 0.200 246 0.235 0.200 956 0.086 0.200 578 0.194 0.200 65 0.166 0.200 17 0.308 0.200 49 0.149 0.200 29 0.936 1.500 599 1.813 2.000 950 3.051 3.000 394 5.162 4.500 388 0.323 0.242 1.79 53 524 20 27.98 1.750 25.904 1O3U 10935 0.076 1 16.5000 5.100 95.6 1.75 1.80 2.200 0.417 1 2.30 72.3 data reduction MOSFLM data scaling SCALA model building RESOLVE phasing SOLVE refinement REFMAC data scaling CCP4 (SCALA) phasing RESOLVE Crystal structure of an hepn domain protein (tm0613) from thermotoga maritima at 1.75 A resolution 1 N N 2 N N A HIS -2 A HIS 10 HELX_P A HIS 17 A HIS 29 1 1 20 A PHE 19 A PHE 31 HELX_P A GLY 43 A GLY 55 1 2 25 A SER 50 A SER 62 HELX_P A SER 59 A SER 71 1 3 10 A PRO 65 A PRO 77 HELX_P A LYS 77 A LYS 89 1 4 13 A GLY 91 A GLY 103 HELX_P A SER 121 A SER 133 1 5 31 disulf 2.043 A A CYS 24 A SG CYS 36 1_555 A CYS 79 A SG CYS 91 1_555 disulf 2.032 B A CYS 24 A SG CYS 36 1_555 A CYS 79 A SG CYS 91 1_555 covale 1.327 both A ARG 41 A C ARG 53 1_555 A MSE 42 A N MSE 54 1_555 covale 1.329 both A MSE 42 A C MSE 54 1_555 A GLY 43 A N GLY 55 1_555 UNKNOWN FUNCTION Structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI, unknown function Q9WZ82_THEMA UNP 1 1 Q9WZ82 MDAAKDDLEHAKHDLEHGFYNWACFSSQQAAEKAVKAVFQRMGAQAWGYSVPDFLGELSSRFEIPEELMDHALELDKACI PTRYPDALPSGSPRNRYSRIEAERLVNYAEKIIRFCEDLLSRI 1 123 1O3U 1 123 Q9WZ82 A 1 13 135 1 expression tag MET -11 1O3U A Q9WZ82 UNP 1 1 expression tag GLY -10 1O3U A Q9WZ82 UNP 2 1 expression tag SER -9 1O3U A Q9WZ82 UNP 3 1 expression tag ASP -8 1O3U A Q9WZ82 UNP 4 1 expression tag LYS -7 1O3U A Q9WZ82 UNP 5 1 expression tag ILE -6 1O3U A Q9WZ82 UNP 6 1 expression tag HIS -5 1O3U A Q9WZ82 UNP 7 1 expression tag HIS -4 1O3U A Q9WZ82 UNP 8 1 expression tag HIS -3 1O3U A Q9WZ82 UNP 9 1 expression tag HIS -2 1O3U A Q9WZ82 UNP 10 1 expression tag HIS -1 1O3U A Q9WZ82 UNP 11 1 expression tag HIS 0 1O3U A Q9WZ82 UNP 12 1 MET modified residue MSE 42 1O3U A Q9WZ82 UNP 42 54 92 P 41 21 2