0.044175 0.025505 0.000000 0.000000 0.051009 0.000000 0.000000 0.000000 0.022431 0.00000 0.00000 0.00000 Gao, Y.G. Robinson, H. Guan, Y. Liaw, Y.C. van Boom, J.H. van der Marel, G.A. Wang, A.H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 36 90.00 90.00 120.00 22.637 22.637 44.581 Co 2 58.933 COBALT (II) ION non-polymer C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer N 1 N CO N 2 N O N 3 N P N 4 N O N 5 N O N 6 N O N 7 N C N 8 R C N 9 N O N 10 S C N 11 N O N 12 N C N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N H N 40 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing US J.Biomol.Struct.Dyn. JBSDD6 0646 0739-1102 16 69 76 9745896 Molecular structure of two crystal forms of cyclic triadenylic acid at 1A resolution. 1998 10.2210/pdb1o55/pdb pdb_00001o55 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 123.00 1 IMAGE PLATE 1997-12-29 RIGAKU SINGLE WAVELENGTH M x-ray 1 1.0 ROTATING ANODE RIGAKU RU200 894.663 DNA (5'-CD(*AP*AP*AP)-3') 2 syn polymer 58.933 COBALT (II) ION 1 syn non-polymer 18.015 water 23 nat water CYCLIC TRINUCLEOTIDE no no (DA)(DA)(DA) AAA A,B polydeoxyribonucleotide n n n 1 1.67 26.0000 VAPOR DIFFUSION, HANGING DROP 4.50 pH 4.50, VAPOR DIFFUSION, HANGING DROP, temperature 298.00K 298.00 COCL3 1 GLYCINE 1 MPD 1 MPD 2 software chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Refinement description Data collection Database references Derived calculations 1 0 2003-08-26 1 1 2008-04-26 1 2 2011-07-13 1 3 2017-10-04 1 4 2023-12-27 _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id 2003-08-26 SPRSDE SEQUENCE The crystallized entity is 5'-CD(*AP*AP*AP)-3', however, each of the two independent molecules sits on the crystallographic 3-fold axis. Remark 350 provides the way to create cyclic D(*Ap*Ap*Ap) molecule. RCSB Y RCSB 2003-08-20 REL REL CO COBALT (II) ION HOH water Synthetic sample OCO 7 2 CO CO 8 B HOH 103 3 HOH HOH 103 A HOH 104 3 HOH HOH 104 A HOH 108 3 HOH HOH 108 A HOH 109 3 HOH HOH 109 A HOH 112 3 HOH HOH 112 A HOH 113 3 HOH HOH 113 A HOH 114 3 HOH HOH 114 A HOH 117 3 HOH HOH 117 A OCO 7 3 HOH HOH 121 A OCO 7 3 HOH HOH 122 A HOH 101 3 HOH HOH 101 B HOH 102 3 HOH HOH 102 B HOH 105 3 HOH HOH 105 B HOH 106 3 HOH HOH 106 B HOH 107 3 HOH HOH 107 B HOH 110 3 HOH HOH 110 B HOH 111 3 HOH HOH 111 B HOH 115 3 HOH HOH 115 B HOH 116 3 HOH HOH 116 B OCO 7 3 HOH HOH 118 B OCO 7 3 HOH HOH 119 B OCO 7 3 HOH HOH 120 B OCO 7 3 HOH HOH 123 B A 2 n 1 DA 2 A n 2 3 A n 3 4 A A 5 n 1 DA 5 B n 2 6 B n 3 7 B 0.138 author_defined_assembly 3 trimeric author_defined_assembly 3 trimeric A HOH 121 D O HOH 1_555 B CO 8 C CO CO 1_555 A HOH 122 D O HOH 1_555 88.7 A HOH 121 D O HOH 1_555 B CO 8 C CO CO 1_555 B HOH 118 E O HOH 1_555 87.2 A HOH 122 D O HOH 1_555 B CO 8 C CO CO 1_555 B HOH 118 E O HOH 1_555 94.8 A HOH 121 D O HOH 1_555 B CO 8 C CO CO 1_555 B HOH 119 E O HOH 1_555 90.9 A HOH 122 D O HOH 1_555 B CO 8 C CO CO 1_555 B HOH 119 E O HOH 1_555 89.3 B HOH 118 E O HOH 1_555 B CO 8 C CO CO 1_555 B HOH 119 E O HOH 1_555 175.4 A HOH 121 D O HOH 1_555 B CO 8 C CO CO 1_555 B HOH 120 E O HOH 1_555 94.8 A HOH 122 D O HOH 1_555 B CO 8 C CO CO 1_555 B HOH 120 E O HOH 1_555 175.3 B HOH 118 E O HOH 1_555 B CO 8 C CO CO 1_555 B HOH 120 E O HOH 1_555 88.6 B HOH 119 E O HOH 1_555 B CO 8 C CO CO 1_555 B HOH 120 E O HOH 1_555 87.5 A HOH 121 D O HOH 1_555 B CO 8 C CO CO 1_555 B HOH 123 E O HOH 1_555 173.2 A HOH 122 D O HOH 1_555 B CO 8 C CO CO 1_555 B HOH 123 E O HOH 1_555 84.8 B HOH 118 E O HOH 1_555 B CO 8 C CO CO 1_555 B HOH 123 E O HOH 1_555 91.6 B HOH 119 E O HOH 1_555 B CO 8 C CO CO 1_555 B HOH 123 E O HOH 1_555 90.7 B HOH 120 E O HOH 1_555 B CO 8 C CO CO 1_555 B HOH 123 E O HOH 1_555 91.8 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_565 -x+y,-x+1,z crystal symmetry operation -11.3185000000 19.6042170655 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_665 -y+1,x-y+1,z crystal symmetry operation 11.3185000000 19.6042170655 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_555 -y,x-y,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_555 -x+y,-x,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 1 A HOH 103 D HOH 1 A HOH 117 D HOH 1 B HOH 101 E HOH 1 B HOH 105 E HOH 1 B HOH 106 E HOH 1 B HOH 107 E HOH 1 B HOH 111 E HOH 1 A DA 3 A DA 2 1 Y 1 A DA 4 A DA 3 1 Y 1 B DA 6 B DA 2 1 Y 1 B DA 7 B DA 3 1 Y 1 -3.39 0.50 113.80 110.41 A A A N7 C8 N9 DA DA DA 2 2 2 N 1 3.45 0.40 105.80 109.25 A A A C8 N9 C4 DA DA DA 2 2 2 N 1 -2.49 0.40 105.80 103.31 A A A N9 C4 C5 DA DA DA 2 2 2 N 1 A A P O3' DA DA 2 2 1.61 1_555 3_565 1 B B P O3' DA DA 5 5 1.62 1_555 3_555 0.144 0.138 1.040 10.000 2198 2198 97.200 1 0.00 0.00 1.040 10.000 17 66 7 42 0 0.016 0.031 1.040 10.000 1O55 2198 2198 0.000 0.000 0.044 1 3.500 95.400 data collection bioteX data reduction bioteX phasing SHELXS refinement SHELXL-97 data scaling bioteX MOLECULAR STRUCTURE OF TWO CRYSTAL FORMS OF CYCLIC TRIADENYLIC ACID AT 1 ANGSTROM RESOLUTION 1 N N 1 N N 2 N N 3 N N 3 N N metalc 2.101 A HOH 121 D O HOH 1_555 B CO 8 C CO CO 1_555 metalc 2.070 A HOH 122 D O HOH 1_555 B CO 8 C CO CO 1_555 metalc 1.989 B CO 8 C CO CO 1_555 B HOH 118 E O HOH 1_555 metalc 2.133 B CO 8 C CO CO 1_555 B HOH 119 E O HOH 1_555 metalc 2.074 B CO 8 C CO CO 1_555 B HOH 120 E O HOH 1_555 metalc 2.068 B CO 8 C CO CO 1_555 B HOH 123 E O HOH 1_555 DNA CYCLIC TRINUCLEOTIDE, DNA 1O55 PDB 1 1O55 2 4 1O55 2 4 1O55 A 1 1 3 5 7 1O55 5 7 1O55 B 1 1 3 BINDING SITE FOR RESIDUE CO B 8 B CO 8 Software 6 A HOH 121 D HOH 6 1_555 A HOH 122 D HOH 6 1_555 B HOH 118 E HOH 6 1_555 B HOH 119 E HOH 6 1_555 B HOH 120 E HOH 6 1_555 B HOH 123 E HOH 6 1_555 155 hexagonal H 3 2