0.009328 0.005385 0.000000 0.000000 0.010771 0.000000 0.000000 0.000000 0.007412 0.00000 0.00000 0.00000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 107.209 107.209 134.918 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proteins PSFGEY 0867 0887-3585 56 619 624 10.1002/prot.20164 15229895 Crystal structure of an allantoicase (YIR029W) from Saccharomyces cerevisiae at 2.4 A resolution 2004 10.2210/pdb1o59/pdb pdb_00001o59 100 1 100 1 1 CCD 2003-04-17 ADSC QUANTUM 315 CCD 2003-04-17 ADSC QUANTUM 315 single crystal Si(111) bent monochromator SINGLE WAVELENGTH M x-ray 1 double crystal monochromator MAD M x-ray 1 0.976224 1.0 0.979608 1.0 0.918370 1.0 0.979413 1.0 BL11-1 SSRL 0.976224 SYNCHROTRON SSRL BEAMLINE BL11-1 BL9-2 SSRL 0.979608, 0.918370, 0.979413 SYNCHROTRON SSRL BEAMLINE BL9-2 40464.828 Allantoicase 3.5.3.4 1 man polymer 18.015 water 218 nat water Allantoate amidinohydrolase no yes MGSDKIHHHHHH(MSE)KFFSLADEAEFKSIIISKNKAVDVIGSKLGGQVVSFSDEWFASAENLIQPTAPIRDPTRFVHS GAWYDGWETRRHNE(MSE)EYDWVIIK(MSE)GVAAAHIIGGEIDTAFFNGNHAPFVSIEALYDEGEEGNIVEDDSRWVE IVEKFECGPSQRHLFVRGNGLTKERFTHIKLK(MSE)YPDGGIARFRLYGRVVPPELKTKDHIIDLAYVCNGAVALKYSD QHFGSVDNLLLPGRGHD(MSE)SDGWETKRSRQPGHTDWAVIQLGRESSFIEKIIVDTAHFRGNFPQFITVEGCLKESES SENTGEGTWVELVGKSKTGPDKEHVYEIRKSIRVSHVKLTIIPDGGVKRIRVWGY MGSDKIHHHHHHMKFFSLADEAEFKSIIISKNKAVDVIGSKLGGQVVSFSDEWFASAENLIQPTAPIRDPTRFVHSGAWY DGWETRRHNEMEYDWVIIKMGVAAAHIIGGEIDTAFFNGNHAPFVSIEALYDEGEEGNIVEDDSRWVEIVEKFECGPSQR HLFVRGNGLTKERFTHIKLKMYPDGGIARFRLYGRVVPPELKTKDHIIDLAYVCNGAVALKYSDQHFGSVDNLLLPGRGH DMSDGWETKRSRQPGHTDWAVIQLGRESSFIEKIIVDTAHFRGNFPQFITVEGCLKESESSENTGEGTWVELVGKSKTGP DKEHVYEIRKSIRVSHVKLTIIPDGGVKRIRVWGY A 355059 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n baker's yeast Saccharomyces Escherichia sample YIR029W 4932 Saccharomyces cerevisiae 562 Escherichia coli Plasmid 2 2.87 56.81 VAPOR DIFFUSION,SITTING DROP,NANODROP 30% Ethylene Glycol , VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K 293 VAPOR DIFFUSION,SITTING DROP,NANODROP 30% Ethylene Glycol, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K 293 Joint Center for Structural Genomics JCSG PSI, Protein Structure Initiative pdbx_database_related database_2 struct_conn struct_ref_seq_dif repository Initial release Version format compliance Advisory Version format compliance Database references Database references Derived calculations 1 0 2003-09-02 1 1 2008-04-26 1 2 2011-07-13 1 3 2017-12-20 1 4 2023-01-25 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details Y RCSB Y RCSB 2003-08-22 REL REL HOH water HOH 501 2 HOH HOH 501 A HOH 502 2 HOH HOH 502 A HOH 503 2 HOH HOH 503 A HOH 504 2 HOH HOH 504 A HOH 505 2 HOH HOH 505 A HOH 506 2 HOH HOH 506 A HOH 507 2 HOH HOH 507 A HOH 508 2 HOH HOH 508 A HOH 509 2 HOH HOH 509 A HOH 510 2 HOH HOH 510 A HOH 511 2 HOH HOH 511 A HOH 512 2 HOH HOH 512 A HOH 513 2 HOH HOH 513 A HOH 514 2 HOH HOH 514 A HOH 516 2 HOH HOH 516 A HOH 518 2 HOH HOH 518 A HOH 520 2 HOH HOH 520 A HOH 521 2 HOH HOH 521 A HOH 522 2 HOH HOH 522 A HOH 523 2 HOH HOH 523 A HOH 524 2 HOH HOH 524 A HOH 525 2 HOH HOH 525 A HOH 526 2 HOH HOH 526 A HOH 527 2 HOH HOH 527 A HOH 528 2 HOH HOH 528 A HOH 529 2 HOH HOH 529 A HOH 530 2 HOH HOH 530 A HOH 531 2 HOH HOH 531 A HOH 532 2 HOH HOH 532 A HOH 533 2 HOH HOH 533 A HOH 534 2 HOH HOH 534 A HOH 535 2 HOH HOH 535 A HOH 536 2 HOH HOH 536 A HOH 537 2 HOH HOH 537 A HOH 538 2 HOH HOH 538 A HOH 539 2 HOH HOH 539 A HOH 540 2 HOH HOH 540 A HOH 541 2 HOH HOH 541 A HOH 542 2 HOH HOH 542 A HOH 543 2 HOH HOH 543 A HOH 544 2 HOH HOH 544 A HOH 545 2 HOH HOH 545 A HOH 546 2 HOH HOH 546 A HOH 547 2 HOH HOH 547 A HOH 548 2 HOH HOH 548 A HOH 549 2 HOH HOH 549 A HOH 550 2 HOH HOH 550 A HOH 551 2 HOH HOH 551 A HOH 552 2 HOH HOH 552 A HOH 553 2 HOH HOH 553 A HOH 554 2 HOH HOH 554 A HOH 555 2 HOH HOH 555 A HOH 556 2 HOH HOH 556 A HOH 557 2 HOH HOH 557 A HOH 558 2 HOH HOH 558 A HOH 559 2 HOH HOH 559 A HOH 560 2 HOH HOH 560 A HOH 561 2 HOH HOH 561 A HOH 562 2 HOH HOH 562 A HOH 563 2 HOH HOH 563 A HOH 564 2 HOH HOH 564 A HOH 565 2 HOH HOH 565 A HOH 566 2 HOH HOH 566 A HOH 567 2 HOH HOH 567 A HOH 568 2 HOH HOH 568 A HOH 569 2 HOH HOH 569 A HOH 570 2 HOH HOH 570 A HOH 571 2 HOH HOH 571 A HOH 573 2 HOH HOH 573 A HOH 575 2 HOH HOH 575 A HOH 576 2 HOH HOH 576 A HOH 577 2 HOH HOH 577 A HOH 578 2 HOH HOH 578 A HOH 579 2 HOH HOH 579 A HOH 580 2 HOH HOH 580 A HOH 581 2 HOH HOH 581 A HOH 582 2 HOH HOH 582 A HOH 583 2 HOH HOH 583 A HOH 584 2 HOH HOH 584 A HOH 585 2 HOH HOH 585 A HOH 586 2 HOH HOH 586 A HOH 587 2 HOH HOH 587 A HOH 588 2 HOH HOH 588 A HOH 590 2 HOH HOH 590 A HOH 591 2 HOH HOH 591 A HOH 592 2 HOH HOH 592 A HOH 593 2 HOH HOH 593 A HOH 595 2 HOH HOH 595 A HOH 596 2 HOH HOH 596 A HOH 597 2 HOH HOH 597 A HOH 598 2 HOH HOH 598 A HOH 599 2 HOH HOH 599 A HOH 601 2 HOH HOH 601 A HOH 602 2 HOH HOH 602 A HOH 603 2 HOH HOH 603 A HOH 604 2 HOH HOH 604 A HOH 605 2 HOH HOH 605 A HOH 606 2 HOH HOH 606 A HOH 608 2 HOH HOH 608 A HOH 611 2 HOH HOH 611 A HOH 613 2 HOH HOH 613 A HOH 616 2 HOH HOH 616 A HOH 617 2 HOH HOH 617 A HOH 618 2 HOH HOH 618 A HOH 619 2 HOH HOH 619 A HOH 620 2 HOH HOH 620 A HOH 621 2 HOH HOH 621 A HOH 622 2 HOH HOH 622 A HOH 623 2 HOH HOH 623 A HOH 624 2 HOH HOH 624 A HOH 625 2 HOH HOH 625 A HOH 626 2 HOH HOH 626 A HOH 627 2 HOH HOH 627 A HOH 628 2 HOH HOH 628 A HOH 629 2 HOH HOH 629 A HOH 630 2 HOH HOH 630 A HOH 631 2 HOH HOH 631 A HOH 632 2 HOH HOH 632 A HOH 633 2 HOH HOH 633 A HOH 634 2 HOH HOH 634 A HOH 635 2 HOH HOH 635 A HOH 636 2 HOH HOH 636 A HOH 637 2 HOH HOH 637 A HOH 638 2 HOH HOH 638 A HOH 640 2 HOH HOH 640 A HOH 641 2 HOH HOH 641 A HOH 642 2 HOH HOH 642 A HOH 643 2 HOH HOH 643 A HOH 644 2 HOH HOH 644 A HOH 645 2 HOH HOH 645 A HOH 646 2 HOH HOH 646 A HOH 647 2 HOH HOH 647 A HOH 648 2 HOH HOH 648 A HOH 649 2 HOH HOH 649 A HOH 650 2 HOH HOH 650 A HOH 651 2 HOH HOH 651 A HOH 652 2 HOH HOH 652 A HOH 653 2 HOH HOH 653 A HOH 654 2 HOH HOH 654 A HOH 656 2 HOH HOH 656 A HOH 658 2 HOH HOH 658 A HOH 659 2 HOH HOH 659 A HOH 660 2 HOH HOH 660 A HOH 661 2 HOH HOH 661 A HOH 662 2 HOH HOH 662 A HOH 663 2 HOH HOH 663 A HOH 664 2 HOH HOH 664 A HOH 665 2 HOH HOH 665 A HOH 666 2 HOH HOH 666 A HOH 668 2 HOH HOH 668 A HOH 669 2 HOH HOH 669 A HOH 670 2 HOH HOH 670 A HOH 671 2 HOH HOH 671 A HOH 672 2 HOH HOH 672 A HOH 673 2 HOH HOH 673 A HOH 674 2 HOH HOH 674 A HOH 675 2 HOH HOH 675 A HOH 676 2 HOH HOH 676 A HOH 677 2 HOH HOH 677 A HOH 678 2 HOH HOH 678 A HOH 679 2 HOH HOH 679 A HOH 680 2 HOH HOH 680 A HOH 681 2 HOH HOH 681 A HOH 682 2 HOH HOH 682 A HOH 683 2 HOH HOH 683 A HOH 684 2 HOH HOH 684 A HOH 685 2 HOH HOH 685 A HOH 686 2 HOH HOH 686 A HOH 687 2 HOH HOH 687 A HOH 688 2 HOH HOH 688 A HOH 689 2 HOH HOH 689 A HOH 690 2 HOH HOH 690 A HOH 691 2 HOH HOH 691 A HOH 692 2 HOH HOH 692 A HOH 693 2 HOH HOH 693 A HOH 694 2 HOH HOH 694 A HOH 695 2 HOH HOH 695 A HOH 696 2 HOH HOH 696 A HOH 697 2 HOH HOH 697 A HOH 698 2 HOH HOH 698 A HOH 699 2 HOH HOH 699 A HOH 700 2 HOH HOH 700 A HOH 701 2 HOH HOH 701 A HOH 702 2 HOH HOH 702 A HOH 703 2 HOH HOH 703 A HOH 704 2 HOH HOH 704 A HOH 705 2 HOH HOH 705 A HOH 706 2 HOH HOH 706 A HOH 707 2 HOH HOH 707 A HOH 708 2 HOH HOH 708 A HOH 709 2 HOH HOH 709 A HOH 712 2 HOH HOH 712 A HOH 713 2 HOH HOH 713 A HOH 714 2 HOH HOH 714 A HOH 715 2 HOH HOH 715 A HOH 717 2 HOH HOH 717 A HOH 718 2 HOH HOH 718 A HOH 719 2 HOH HOH 719 A HOH 720 2 HOH HOH 720 A HOH 721 2 HOH HOH 721 A HOH 722 2 HOH HOH 722 A HOH 723 2 HOH HOH 723 A HOH 724 2 HOH HOH 724 A HOH 725 2 HOH HOH 725 A HOH 726 2 HOH HOH 726 A HOH 727 2 HOH HOH 727 A HOH 728 2 HOH HOH 728 A HOH 729 2 HOH HOH 729 A HOH 730 2 HOH HOH 730 A HOH 731 2 HOH HOH 731 A HOH 732 2 HOH HOH 732 A HOH 733 2 HOH HOH 733 A HOH 734 2 HOH HOH 734 A HOH 735 2 HOH HOH 735 A HOH 736 2 HOH HOH 736 A HOH 737 2 HOH HOH 737 A HOH 738 2 HOH HOH 738 A HOH 739 2 HOH HOH 739 A n 1 -11 A n 2 -10 A n 3 -9 A n 4 -8 A n 5 -7 A n 6 -6 A n 7 -5 A n 8 -4 A n 9 -3 A n 10 -2 A n 11 -1 A HIS 0 n 12 HIS 0 A MSE 1 n 13 MSE 1 A LYS 2 n 14 LYS 2 A PHE 3 n 15 PHE 3 A PHE 4 n 16 PHE 4 A SER 5 n 17 SER 5 A LEU 6 n 18 LEU 6 A ALA 7 n 19 ALA 7 A ASP 8 n 20 ASP 8 A GLU 9 n 21 GLU 9 A ALA 10 n 22 ALA 10 A GLU 11 n 23 GLU 11 A PHE 12 n 24 PHE 12 A LYS 13 n 25 LYS 13 A SER 14 n 26 SER 14 A ILE 15 n 27 ILE 15 A ILE 16 n 28 ILE 16 A ILE 17 n 29 ILE 17 A SER 18 n 30 SER 18 A LYS 19 n 31 LYS 19 A ASN 20 n 32 ASN 20 A LYS 21 n 33 LYS 21 A ALA 22 n 34 ALA 22 A VAL 23 n 35 VAL 23 A ASP 24 n 36 ASP 24 A VAL 25 n 37 VAL 25 A ILE 26 n 38 ILE 26 A GLY 27 n 39 GLY 27 A SER 28 n 40 SER 28 A LYS 29 n 41 LYS 29 A LEU 30 n 42 LEU 30 A GLY 31 n 43 GLY 31 A GLY 32 n 44 GLY 32 A GLN 33 n 45 GLN 33 A VAL 34 n 46 VAL 34 A VAL 35 n 47 VAL 35 A SER 36 n 48 SER 36 A PHE 37 n 49 PHE 37 A SER 38 n 50 SER 38 A ASP 39 n 51 ASP 39 A GLU 40 n 52 GLU 40 A TRP 41 n 53 TRP 41 A PHE 42 n 54 PHE 42 A ALA 43 n 55 ALA 43 A SER 44 n 56 SER 44 A ALA 45 n 57 ALA 45 A GLU 46 n 58 GLU 46 A ASN 47 n 59 ASN 47 A LEU 48 n 60 LEU 48 A ILE 49 n 61 ILE 49 A GLN 50 n 62 GLN 50 A PRO 51 n 63 PRO 51 A THR 52 n 64 THR 52 A ALA 53 n 65 ALA 53 A PRO 54 n 66 PRO 54 A ILE 55 n 67 ILE 55 A ARG 56 n 68 ARG 56 A ASP 57 n 69 ASP 57 A n 70 58 A n 71 59 A n 72 60 A n 73 61 A n 74 62 A n 75 63 A n 76 64 A n 77 65 A n 78 66 A TRP 67 n 79 TRP 67 A TYR 68 n 80 TYR 68 A ASP 69 n 81 ASP 69 A GLY 70 n 82 GLY 70 A TRP 71 n 83 TRP 71 A GLU 72 n 84 GLU 72 A THR 73 n 85 THR 73 A ARG 74 n 86 ARG 74 A ARG 75 n 87 ARG 75 A HIS 76 n 88 HIS 76 A ASN 77 n 89 ASN 77 A GLU 78 n 90 GLU 78 A MSE 79 n 91 MSE 79 A GLU 80 n 92 GLU 80 A TYR 81 n 93 TYR 81 A ASP 82 n 94 ASP 82 A TRP 83 n 95 TRP 83 A VAL 84 n 96 VAL 84 A ILE 85 n 97 ILE 85 A ILE 86 n 98 ILE 86 A LYS 87 n 99 LYS 87 A MSE 88 n 100 MSE 88 A GLY 89 n 101 GLY 89 A VAL 90 n 102 VAL 90 A ALA 91 n 103 ALA 91 A ALA 92 n 104 ALA 92 A ALA 93 n 105 ALA 93 A HIS 94 n 106 HIS 94 A ILE 95 n 107 ILE 95 A ILE 96 n 108 ILE 96 A GLY 97 n 109 GLY 97 A GLY 98 n 110 GLY 98 A GLU 99 n 111 GLU 99 A ILE 100 n 112 ILE 100 A ASP 101 n 113 ASP 101 A THR 102 n 114 THR 102 A ALA 103 n 115 ALA 103 A PHE 104 n 116 PHE 104 A PHE 105 n 117 PHE 105 A ASN 106 n 118 ASN 106 A GLY 107 n 119 GLY 107 A ASN 108 n 120 ASN 108 A HIS 109 n 121 HIS 109 A ALA 110 n 122 ALA 110 A PRO 111 n 123 PRO 111 A PHE 112 n 124 PHE 112 A VAL 113 n 125 VAL 113 A SER 114 n 126 SER 114 A ILE 115 n 127 ILE 115 A GLU 116 n 128 GLU 116 A ALA 117 n 129 ALA 117 A LEU 118 n 130 LEU 118 A TYR 119 n 131 TYR 119 A ASP 120 n 132 ASP 120 A GLU 121 n 133 GLU 121 A GLY 122 n 134 GLY 122 A GLU 123 n 135 GLU 123 A GLU 124 n 136 GLU 124 A GLY 125 n 137 GLY 125 A ASN 126 n 138 ASN 126 A ILE 127 n 139 ILE 127 A VAL 128 n 140 VAL 128 A GLU 129 n 141 GLU 129 A ASP 130 n 142 ASP 130 A ASP 131 n 143 ASP 131 A SER 132 n 144 SER 132 A ARG 133 n 145 ARG 133 A TRP 134 n 146 TRP 134 A VAL 135 n 147 VAL 135 A GLU 136 n 148 GLU 136 A ILE 137 n 149 ILE 137 A VAL 138 n 150 VAL 138 A GLU 139 n 151 GLU 139 A LYS 140 n 152 LYS 140 A PHE 141 n 153 PHE 141 A GLU 142 n 154 GLU 142 A CYS 143 n 155 CYS 143 A GLY 144 n 156 GLY 144 A PRO 145 n 157 PRO 145 A SER 146 n 158 SER 146 A GLN 147 n 159 GLN 147 A ARG 148 n 160 ARG 148 A HIS 149 n 161 HIS 149 A LEU 150 n 162 LEU 150 A PHE 151 n 163 PHE 151 A VAL 152 n 164 VAL 152 A ARG 153 n 165 ARG 153 A GLY 154 n 166 GLY 154 A ASN 155 n 167 ASN 155 A GLY 156 n 168 GLY 156 A LEU 157 n 169 LEU 157 A THR 158 n 170 THR 158 A LYS 159 n 171 LYS 159 A GLU 160 n 172 GLU 160 A ARG 161 n 173 ARG 161 A PHE 162 n 174 PHE 162 A THR 163 n 175 THR 163 A HIS 164 n 176 HIS 164 A ILE 165 n 177 ILE 165 A LYS 166 n 178 LYS 166 A LEU 167 n 179 LEU 167 A LYS 168 n 180 LYS 168 A MSE 169 n 181 MSE 169 A TYR 170 n 182 TYR 170 A PRO 171 n 183 PRO 171 A ASP 172 n 184 ASP 172 A GLY 173 n 185 GLY 173 A GLY 174 n 186 GLY 174 A ILE 175 n 187 ILE 175 A ALA 176 n 188 ALA 176 A ARG 177 n 189 ARG 177 A PHE 178 n 190 PHE 178 A ARG 179 n 191 ARG 179 A LEU 180 n 192 LEU 180 A TYR 181 n 193 TYR 181 A GLY 182 n 194 GLY 182 A ARG 183 n 195 ARG 183 A VAL 184 n 196 VAL 184 A VAL 185 n 197 VAL 185 A PRO 186 n 198 PRO 186 A PRO 187 n 199 PRO 187 A n 200 188 A n 201 189 A n 202 190 A n 203 191 A n 204 192 A n 205 193 A HIS 194 n 206 HIS 194 A ILE 195 n 207 ILE 195 A ILE 196 n 208 ILE 196 A ASP 197 n 209 ASP 197 A LEU 198 n 210 LEU 198 A ALA 199 n 211 ALA 199 A TYR 200 n 212 TYR 200 A VAL 201 n 213 VAL 201 A CYS 202 n 214 CYS 202 A ASN 203 n 215 ASN 203 A GLY 204 n 216 GLY 204 A ALA 205 n 217 ALA 205 A VAL 206 n 218 VAL 206 A ALA 207 n 219 ALA 207 A LEU 208 n 220 LEU 208 A LYS 209 n 221 LYS 209 A TYR 210 n 222 TYR 210 A SER 211 n 223 SER 211 A ASP 212 n 224 ASP 212 A GLN 213 n 225 GLN 213 A HIS 214 n 226 HIS 214 A PHE 215 n 227 PHE 215 A GLY 216 n 228 GLY 216 A SER 217 n 229 SER 217 A VAL 218 n 230 VAL 218 A ASP 219 n 231 ASP 219 A ASN 220 n 232 ASN 220 A LEU 221 n 233 LEU 221 A LEU 222 n 234 LEU 222 A LEU 223 n 235 LEU 223 A PRO 224 n 236 PRO 224 A GLY 225 n 237 GLY 225 A ARG 226 n 238 ARG 226 A GLY 227 n 239 GLY 227 A HIS 228 n 240 HIS 228 A ASP 229 n 241 ASP 229 A MSE 230 n 242 MSE 230 A SER 231 n 243 SER 231 A ASP 232 n 244 ASP 232 A GLY 233 n 245 GLY 233 A TRP 234 n 246 TRP 234 A GLU 235 n 247 GLU 235 A THR 236 n 248 THR 236 A LYS 237 n 249 LYS 237 A ARG 238 n 250 ARG 238 A SER 239 n 251 SER 239 A ARG 240 n 252 ARG 240 A GLN 241 n 253 GLN 241 A PRO 242 n 254 PRO 242 A GLY 243 n 255 GLY 243 A HIS 244 n 256 HIS 244 A THR 245 n 257 THR 245 A ASP 246 n 258 ASP 246 A TRP 247 n 259 TRP 247 A ALA 248 n 260 ALA 248 A VAL 249 n 261 VAL 249 A ILE 250 n 262 ILE 250 A GLN 251 n 263 GLN 251 A LEU 252 n 264 LEU 252 A GLY 253 n 265 GLY 253 A ARG 254 n 266 ARG 254 A GLU 255 n 267 GLU 255 A SER 256 n 268 SER 256 A SER 257 n 269 SER 257 A PHE 258 n 270 PHE 258 A ILE 259 n 271 ILE 259 A GLU 260 n 272 GLU 260 A LYS 261 n 273 LYS 261 A ILE 262 n 274 ILE 262 A ILE 263 n 275 ILE 263 A VAL 264 n 276 VAL 264 A ASP 265 n 277 ASP 265 A THR 266 n 278 THR 266 A ALA 267 n 279 ALA 267 A HIS 268 n 280 HIS 268 A PHE 269 n 281 PHE 269 A ARG 270 n 282 ARG 270 A GLY 271 n 283 GLY 271 A ASN 272 n 284 ASN 272 A PHE 273 n 285 PHE 273 A PRO 274 n 286 PRO 274 A GLN 275 n 287 GLN 275 A PHE 276 n 288 PHE 276 A ILE 277 n 289 ILE 277 A THR 278 n 290 THR 278 A VAL 279 n 291 VAL 279 A GLU 280 n 292 GLU 280 A GLY 281 n 293 GLY 281 A CYS 282 n 294 CYS 282 A LEU 283 n 295 LEU 283 A LYS 284 n 296 LYS 284 A n 297 285 A n 298 286 A n 299 287 A n 300 288 A n 301 289 A n 302 290 A n 303 291 A n 304 292 A n 305 293 A n 306 294 A n 307 295 A THR 296 n 308 THR 296 A TRP 297 n 309 TRP 297 A VAL 298 n 310 VAL 298 A GLU 299 n 311 GLU 299 A LEU 300 n 312 LEU 300 A VAL 301 n 313 VAL 301 A GLY 302 n 314 GLY 302 A LYS 303 n 315 LYS 303 A SER 304 n 316 SER 304 A LYS 305 n 317 LYS 305 A THR 306 n 318 THR 306 A GLY 307 n 319 GLY 307 A PRO 308 n 320 PRO 308 A ASP 309 n 321 ASP 309 A LYS 310 n 322 LYS 310 A GLU 311 n 323 GLU 311 A HIS 312 n 324 HIS 312 A VAL 313 n 325 VAL 313 A TYR 314 n 326 TYR 314 A GLU 315 n 327 GLU 315 A ILE 316 n 328 ILE 316 A ARG 317 n 329 ARG 317 A LYS 318 n 330 LYS 318 A SER 319 n 331 SER 319 A ILE 320 n 332 ILE 320 A ARG 321 n 333 ARG 321 A VAL 322 n 334 VAL 322 A SER 323 n 335 SER 323 A HIS 324 n 336 HIS 324 A VAL 325 n 337 VAL 325 A LYS 326 n 338 LYS 326 A LEU 327 n 339 LEU 327 A THR 328 n 340 THR 328 A ILE 329 n 341 ILE 329 A ILE 330 n 342 ILE 330 A PRO 331 n 343 PRO 331 A ASP 332 n 344 ASP 332 A GLY 333 n 345 GLY 333 A GLY 334 n 346 GLY 334 A VAL 335 n 347 VAL 335 A LYS 336 n 348 LYS 336 A ARG 337 n 349 ARG 337 A ILE 338 n 350 ILE 338 A ARG 339 n 351 ARG 339 A VAL 340 n 352 VAL 340 A TRP 341 n 353 TRP 341 A GLY 342 n 354 GLY 342 A TYR 343 n 355 TYR 343 A 3.3975 1.3062 -0.5912 2.0648 -0.6154 1.9452 0.0171 -0.3583 0.4264 0.3071 -0.1626 0.3068 -0.1779 -0.0122 0.1455 -0.2430 0.0106 0.0270 -0.2104 -0.0930 -0.2905 refined 31.8230 53.2820 49.0190 X-RAY DIFFRACTION 3.0547 -0.3312 -0.9740 4.7750 -0.7944 3.0036 -0.0425 -0.1506 0.0814 0.1398 0.1777 0.7001 0.0730 -0.0168 -0.1352 -0.3778 0.0183 0.0501 -0.2744 -0.0211 -0.3478 refined 15.8810 29.3240 46.2170 X-RAY DIFFRACTION A 0 A 12 A 187 A 199 X-RAY DIFFRACTION 1 ALL A 194 A 206 A 343 A 355 X-RAY DIFFRACTION 2 ALL author_defined_assembly 1 monomeric A MSE 1 SELENOMETHIONINE A MSE 13 MET A MSE 79 SELENOMETHIONINE A MSE 91 MET A MSE 88 SELENOMETHIONINE A MSE 100 MET A MSE 169 SELENOMETHIONINE A MSE 181 MET A MSE 230 SELENOMETHIONINE A MSE 242 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N PHE 4 A N PHE 16 A O LEU 150 A O LEU 162 A O PHE 151 A O PHE 163 A N GLY 98 A N GLY 110 A N ASP 101 A N ASP 113 A O ARG 177 A O ARG 189 A O GLY 182 A O GLY 194 A N VAL 23 A N VAL 35 A N GLN 33 A N GLN 45 A O LYS 87 A O LYS 99 A N ILE 86 A N ILE 98 A O ILE 165 A O ILE 177 A O LYS 166 A O LYS 178 A N GLU 116 A N GLU 128 A N ILE 115 A N ILE 127 A O ILE 137 A O ILE 149 A N TRP 71 A N TRP 83 A O ILE 175 A O ILE 187 A N ILE 196 A N ILE 208 A O GLY 342 A O GLY 354 A O ARG 339 A O ARG 351 A N ILE 263 A N ILE 275 A N ILE 262 A N ILE 274 A O TYR 314 A O TYR 326 A N LYS 209 A N LYS 221 A O VAL 249 A O VAL 261 A N ILE 250 A N ILE 262 A O VAL 325 A O VAL 337 A O LYS 326 A O LYS 338 A N GLU 280 A N GLU 292 A N VAL 279 A N VAL 291 A O VAL 301 A O VAL 313 A N PHE 215 A N PHE 227 A O GLU 235 A O GLU 247 A N TRP 234 A N TRP 246 A O VAL 335 A O VAL 347 1 A HOH 577 B HOH 1 A CE LYS 2 A CE LYS 14 1 Y 1 A NZ LYS 2 A NZ LYS 14 1 Y 1 A CE LYS 318 A CE LYS 330 1 Y 1 A NZ LYS 318 A NZ LYS 330 1 Y 1 A MET -11 A MET 1 1 Y 1 A GLY -10 A GLY 2 1 Y 1 A SER -9 A SER 3 1 Y 1 A ASP -8 A ASP 4 1 Y 1 A LYS -7 A LYS 5 1 Y 1 A ILE -6 A ILE 6 1 Y 1 A HIS -5 A HIS 7 1 Y 1 A HIS -4 A HIS 8 1 Y 1 A HIS -3 A HIS 9 1 Y 1 A HIS -2 A HIS 10 1 Y 1 A HIS -1 A HIS 11 1 Y 1 A PRO 58 A PRO 70 1 Y 1 A THR 59 A THR 71 1 Y 1 A ARG 60 A ARG 72 1 Y 1 A PHE 61 A PHE 73 1 Y 1 A VAL 62 A VAL 74 1 Y 1 A HIS 63 A HIS 75 1 Y 1 A SER 64 A SER 76 1 Y 1 A GLY 65 A GLY 77 1 Y 1 A ALA 66 A ALA 78 1 Y 1 A GLU 188 A GLU 200 1 Y 1 A LEU 189 A LEU 201 1 Y 1 A LYS 190 A LYS 202 1 Y 1 A THR 191 A THR 203 1 Y 1 A LYS 192 A LYS 204 1 Y 1 A ASP 193 A ASP 205 1 Y 1 A GLU 285 A GLU 297 1 Y 1 A SER 286 A SER 298 1 Y 1 A GLU 287 A GLU 299 1 Y 1 A SER 288 A SER 300 1 Y 1 A SER 289 A SER 301 1 Y 1 A GLU 290 A GLU 302 1 Y 1 A ASN 291 A ASN 303 1 Y 1 A THR 292 A THR 304 1 Y 1 A GLY 293 A GLY 305 1 Y 1 A GLU 294 A GLU 306 1 Y 1 A GLY 295 A GLY 307 1 Y 1 A A O O HOH HOH 502 736 1.85 1 A A N O HIS HOH 194 721 1.96 1 A A O O HOH HOH 507 734 2.16 1 6.60 0.90 118.30 124.90 A A A CB CG OD2 ASP ASP ASP 212 212 212 N 1 A ILE 17 -95.84 -60.11 1 A GLU 40 -159.81 19.42 1 A ALA 43 -170.76 141.88 1 A PHE 104 71.34 -2.02 1 A ASN 106 -103.74 67.56 1 A GLU 121 -94.18 -74.55 1 A GLU 123 -66.57 74.33 1 A THR 158 -37.01 133.52 1 A ALA 267 -38.72 129.23 1 A HIS 268 70.33 -13.55 1 A ASN 272 -149.77 23.56 1 A ASP 332 -173.45 -176.08 57.277 -2.40 -1.20 0.00 -2.40 0.00 3.61 0.956 0.924 1. SELENIUM OCCUPANCIES WERE SET TO 0.5, TO REFLECT VARIABLE INCORPORATION DURING EXPRESSION. THIS VALUE MINIMIZES RFREE AND THE AMOUNT OF DIFFERENCE DENSITY OVER THE SITES. 2. RESIDUES 188-193 WERE OMITTED, BECAUSE THE STRONG DIFFERENCE DENSITY REMAINED AMBIGUOUS ABOUT THE PATH OF MAIN CHAIN TRACE; THE DENSITY WAS MODELED WITH WATER. 3. THE N-TERMINUS RETAINS STRONG DIFFERENCE DENSITY, SUGGESTING A DOUBLE CONFORMATION FOR MSE1; THIS PROVED DIFFICULT TO MODEL, SO THE CONFORMATION AGREEING BEST WITH EXPERIMENTAL DENSITY WAS RETAINED. 4. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 0.22238 0.17542 0.17765 2.40 41.97 830 17676 4.5 99.77 13.449 0.165 RANDOM LIKELY RESIDUAL 1 ISOTROPIC THROUGHOUT MAD 0.279 0.215 0.80 0.80 1.20 MAXIMUM LIKELIHOOD WITH PHASES BABINET MODEL WITH MASK 2.40 41.97 218 2766 0 0 2548 0.017 0.022 2633 0.001 0.020 2362 1.505 1.913 3554 0.832 3.000 5478 7.304 5.000 312 36.267 23.206 131 17.738 15.000 446 17.963 15.000 20 0.093 0.200 372 0.006 0.020 2920 0.001 0.020 579 0.185 0.200 479 0.199 0.200 2422 0.091 0.200 1648 0.022 0.200 1 0.148 0.200 14 0.302 0.200 46 0.164 0.200 20 0.832 1.500 1672 1.285 2.000 2531 1.706 3.000 1201 2.603 4.500 1023 0.245 2.462 0 1323 20 56.40 2.4000 54.554 1O59 18532 18532 0.099 1,2 13.0 5.1 99.8 0.707 2.40 2.46 1.8 1325 1,2 2.6 98.8 data reduction MOSFLM data scaling SCALA phasing SOLVE model building RESOLVE refinement REFMAC 5.1.9999 data scaling CCP4 (SCALA) phasing RESOLVE Crystal structure of Allantoicase (yir029w) from Saccharomyces cerevisiae at 2.40 A resolution 1 N N 2 N N A SER 5 A SER 17 HELX_P A ALA 7 A ALA 19 5 1 3 A ASP 8 A ASP 20 HELX_P A ILE 17 A ILE 29 1 2 10 A GLY 27 A GLY 39 HELX_P A GLY 31 A GLY 43 5 3 5 A SER 44 A SER 56 HELX_P A GLN 50 A GLN 62 5 4 7 A TYR 200 A TYR 212 HELX_P A GLY 204 A GLY 216 5 5 5 A VAL 218 A VAL 230 HELX_P A LEU 223 A LEU 235 5 6 6 A ASP 229 A ASP 241 HELX_P A ASP 232 A ASP 244 5 7 4 covale 1.336 both A HIS 0 A C HIS 12 1_555 A MSE 1 A N MSE 13 1_555 covale 1.332 both A MSE 1 A C MSE 13 1_555 A LYS 2 A N LYS 14 1_555 covale 1.329 both A GLU 78 A C GLU 90 1_555 A MSE 79 A N MSE 91 1_555 covale 1.333 both A MSE 79 A C MSE 91 1_555 A GLU 80 A N GLU 92 1_555 covale 1.330 both A LYS 87 A C LYS 99 1_555 A MSE 88 A N MSE 100 1_555 covale 1.330 both A MSE 88 A C MSE 100 1_555 A GLY 89 A N GLY 101 1_555 covale 1.327 both A LYS 168 A C LYS 180 1_555 A MSE 169 A N MSE 181 1_555 covale 1.327 both A MSE 169 A C MSE 181 1_555 A TYR 170 A N TYR 182 1_555 covale 1.335 both A ASP 229 A C ASP 241 1_555 A MSE 230 A N MSE 242 1_555 covale 1.316 both A MSE 230 A C MSE 242 1_555 A SER 231 A N SER 243 1_555 HYDROLASE YIR029W, ALLANTOICASE, STRUCTURAL GENOMICS, JCSG, PSI, Protein Structure Initiative, Joint Center for Structural Genomics, HYDROLASE A TYR 170 A TYR 182 1 A PRO 171 A PRO 183 0.04 A ILE 330 A ILE 342 1 A PRO 331 A PRO 343 -16.11 ALC_YEAST UNP 1 1 P25335 MKFFSLADEAEFKSIIISKNKAVDVIGSKLGGQVVSFSDEWFASAENLIQPTAPIRDPTRFVHSGAWYDGWETRRHNEME YDWVIIKMGVAAAHIIGGEIDTAFFNGNHAPFVSIEALYDEGEEGNIVEDDSRWVEIVEKFECGPSQRHLFVRGNGLTKE RFTHIKLKMYPDGGIARFRLYGRVVPPELKTKDHIIDLAYVCNGAVALKYSDQHFGSVDNLLLPGRGHDMSDGWETKRSR QPGHTDWAVIQLGRESSFIEKIIVDTAHFRGNFPQFITVEGCLKESESSENTGEGTWVELVGKSKTGPDKEHVYEIRKSI RVSHVKLTIIPDGGVKRIRVWGY 1 343 1O59 1 343 P25335 A 1 13 355 1 expression tag GLY -10 1O59 A P25335 UNP 2 1 expression tag SER -9 1O59 A P25335 UNP 3 1 expression tag ASP -8 1O59 A P25335 UNP 4 1 expression tag LYS -7 1O59 A P25335 UNP 5 1 expression tag ILE -6 1O59 A P25335 UNP 6 1 expression tag HIS -5 1O59 A P25335 UNP 7 1 expression tag HIS -4 1O59 A P25335 UNP 8 1 expression tag HIS -3 1O59 A P25335 UNP 9 1 expression tag HIS -2 1O59 A P25335 UNP 10 1 expression tag HIS -1 1O59 A P25335 UNP 11 1 expression tag HIS 0 1O59 A P25335 UNP 12 1 MET modified residue MSE 1 1O59 A P25335 UNP 1 13 1 MET modified residue MSE 79 1O59 A P25335 UNP 79 91 1 MET modified residue MSE 88 1O59 A P25335 UNP 88 100 1 MET modified residue MSE 169 1O59 A P25335 UNP 169 181 1 MET modified residue MSE 230 1O59 A P25335 UNP 230 242 5 5 2 4 5 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LYS 2 A LYS 14 A PHE 4 A PHE 16 A ARG 148 A ARG 160 A VAL 152 A VAL 164 A ALA 93 A ALA 105 A ASP 101 A ASP 113 A ARG 177 A ARG 189 A VAL 184 A VAL 196 A VAL 23 A VAL 35 A ASP 24 A ASP 36 A GLN 33 A GLN 45 A PHE 37 A PHE 49 A ASP 82 A ASP 94 A LYS 87 A LYS 99 A HIS 164 A HIS 176 A TYR 170 A TYR 182 A PHE 112 A PHE 124 A LEU 118 A LEU 130 A VAL 135 A VAL 147 A GLU 142 A GLU 154 A TRP 71 A TRP 83 A GLU 72 A GLU 84 A GLY 174 A GLY 186 A ILE 175 A ILE 187 A ILE 196 A ILE 208 A ASP 197 A ASP 209 A ARG 337 A ARG 349 A TYR 343 A TYR 355 A PHE 258 A PHE 270 A ASP 265 A ASP 277 A GLU 311 A GLU 323 A SER 319 A SER 331 A VAL 206 A VAL 218 A TYR 210 A TYR 222 A ASP 246 A ASP 258 A GLN 251 A GLN 263 A HIS 324 A HIS 336 A ILE 330 A ILE 342 A PHE 276 A PHE 288 A CYS 282 A CYS 294 A TRP 297 A TRP 309 A LYS 305 A LYS 317 A PHE 215 A PHE 227 A GLY 216 A GLY 228 A TRP 234 A TRP 246 A GLU 235 A GLU 247 A GLY 334 A GLY 346 A VAL 335 A VAL 347 182 P 63 2 2